Nucleotide sequence of Cla 30 (Accession No. Y17386), a xenobiotic- inducible member of the GST superfamily from Triticum aestivum L. (PGR99-049)

Theodoulou, F. L., Clark, I. M., Pallett, K. E. and Hallahan, D. L. 1999. Nucleotide sequence of Cla 30 (Accession No. Y17386), a xenobiotic- inducible member of the GST superfamily from Triticum aestivum L. (PGR99-049).

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A - Papers appearing in refereed journals

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Eckardt, N. A., Wittenberg, T. A., Bassham, D. C., Chen, P., Chen, Q., Fang, J., Genschik, P., Ghifari, A. S., Guercio, A. M., Gibbs, D. J., Heese, M., Jarvis, R. P., Michaeli, S., Murcha, M. W., Mursalimov, S., Noir, S., Palayam, M., Peixoto, B., Rodriguez, P. L., Schaller, A., Schnittger, A., Serino, G., Shabek, N., Stintzi, A., Theodoulou, F. L., Üstün, S., van Wijk, K. J., Wei, N., Xie, Q., Yu, F. and Zhang, H. 2024. The lowdown on breakdown: Open questions in plant proteolysis. The Plant Cell. p. koae193. https://doi.org/10.1093/plcell/koae193

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Zhang, H., Rundle, C., Winter, N., Miricescu, A., Mooney B. C., Bachmair, A., Graciet, E. and Theodoulou, F. L. 2024. BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition. The Plant Cell. p. koae117. https://doi.org/10.1093/plcell/koae117

Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat

N - Datasets

Reid, T., Kavamura, V. N., Torres-Ballesteros, A., Smith, M., Abadie, M., Pawlett, M., Clark, I. M., Harris, J. A. and Mauchline, T. H. 2024. Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat. https://doi.org/10.23637/rothamsted.98zz7

The potato rhizosphere microbiota correlated to the yield of three different regions in Korea

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Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat

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Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency

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Ndour, P. M. S., Bargaz, A., Rchiad, Z., Pawlett, M., Clark, I. M., Mauchline, T. H., Harris, J. and Lyamlouli, K. 2023. Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency. Microbial Ecology. 86, pp. 2211-2230. https://doi.org/10.1007/s00248-023-02250-6

The UK Crop Microbiome Cryobank – Advancing Microbiome Research for Sustainable Agriculture

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Taketani, R. G., Ryan, M. J., Mauchline, T. H., Malone, J., Jones, S., Thompson, C., Bonnin, J. M., Stewart, H., Yau, P., Clark, I. M. and Holden, N. 2023. The UK Crop Microbiome Cryobank – Advancing Microbiome Research for Sustainable Agriculture.

A new Rothamsted long-term field experiment for the twenty-first century: principles and practice

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Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype

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Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. 4, pp. 51-60. https://doi.org/10.1038/s43016-022-00671-z

Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers

B - Book chapters etc edited externally

Zhang, H., Linster, E., Wirtz, M. and Theodoulou, F. L. 2022. Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers. in: Lois, L. M. and Trujillo, M. (ed.) Plant Proteostasis New York Humana Press Inc. pp. 201-220

Plant proteostasis-a proven and promising target for crop improvement - Editorial

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Theodoulou, F. L., Orosa-Puente, B., Trujillo, M. and Rubio V. 2022. Plant proteostasis-a proven and promising target for crop improvement - Editorial. Essays in Biochemistry. 66 (2), pp. 75-85. https://doi.org/10.1042/EBC20210078

Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration

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Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 190 (2), pp. 1365-1383. https://doi.org/10.1093/plphys/kiac245

The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil

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Barrat, H., Clark, I. M., Evans, J., Chadwick, D. R. and Cardenas, L. M. 2022. The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil. Soil Biology and Biochemistry. 168 (May), p. 108606. https://doi.org/10.1016/j.soilbio.2022.108606

Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat

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Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475

Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation

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Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers, H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek, L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation. bioRxiv. https://doi.org/10.1101/2022.01.21.477196

N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes

A - Papers appearing in refereed journals

Barrat, H., Charteris, A., Le Cocq, K., Abadie, M., Clark, I. M., Chadwick, D. R. and Cardenas, L. M. 2022. N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes. European Journal of Soil Science. 73 (1), p. e13190. https://doi.org/10.1111/ejss.13190

Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads

A - Papers appearing in refereed journals

Ruscoe, H., Taketani, R., Clark, I. M., Lund, G., Hughes, D. J., Dodd, I., Hirsch, P. R. and Mauchline, T. H. 2021. Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads. Frontiers in Microbiology. 12, p. 611339. https://doi.org/10.3389/fmicb.2021.611339

Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils

A - Papers appearing in refereed journals

Clark, I. M., Hughes, D. J., Fu, Q., Abadie, M. and Hirsch, P. R. 2021. Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils . Scientific Reports. 11, p. 15905. https://doi.org/10.1038/s41598-021-95100-9

Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses

A - Papers appearing in refereed journals

Castellano-Hinojosa, A., Le Cocq, K., Charteris, A., Abadie, M., Chadwick, D. R., Clark, I. M., Bedmar, E. J. and Cardenas, L. M. 2021. Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses. International Biodeterioration & Biodegradation. 159, p. 105199. https://doi.org/10.1016/j.ibiod.2021.105199

Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria

A - Papers appearing in refereed journals

Reid, T. E., Kavamura, V. N., Abadie, M., Torres-Ballesteros, A., Pawlett, M., Clark, I. M., Harris, J. and Mauchline, T. H. 2021. Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria. Frontiers in Microbiology. 12 (article), p. 642587. https://doi.org/10.3389/fmicb.2021.642587

Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity

A - Papers appearing in refereed journals

Neal, A. L., Hughes, D. J., Clark, I. M., Jansson, J. K. and Hirsch, P. R. 2021. Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity. mSystems. 6 (3), pp. e01056-20. https://doi.org/10.1128/mSystems.01056-20

Century long fertilization reduces stochasticity controlling grassland microbial community succession

A - Papers appearing in refereed journals

Liang, Y., Ning, D., Lu, Z., Zhang, N., Hale, L., Wu, L., Clark, I. M., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun ,B. and Zhou, J. 2020. Century long fertilization reduces stochasticity controlling grassland microbial community succession. Soil Biology and Biochemistry. 151 (Dec), p. 108023. https://doi.org/10.1016/j.soilbio.2020.108023

The impact of drought and rewetting on N2O emissions from soil in temperate and Mediterranean climates

A - Papers appearing in refereed journals

Barrat, H., Evans, J., Chadwick, D. R., Clark, I. M., Le Cocq, K. and Cardenas, L. M. 2020. The impact of drought and rewetting on N2O emissions from soil in temperate and Mediterranean climates. European Journal of Soil Science. https://doi.org/10.1111/ejss.13015

Edaphic factors and plants influence denitrification in soils from a long-term arable experiment

A - Papers appearing in refereed journals

Clark, I. M., Fu, Q., Abadie, M., Dixon, E. R., Blaud, A. and Hirsch, P. R. 2020. Edaphic factors and plants influence denitrification in soils from a long-term arable experiment. Scientific Reports. 10 (Article), p. 16053. https://doi.org/10.1038/s41598-020-72679-z

Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Neal, A. L., Crawford, J. W., Mooney, S. J., Akkari, E., Zhang, X., Clark, I. M. and Ritz, K. 2020. Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion. European Journal of Soil Science. https://doi.org/10.1111/ejss.13037

The Saccharomyces cerevisiae ABCD subfamily transporter Pxa1/Pxa2p co-imports CoASH into the peroxisome

A - Papers appearing in refereed journals

Van Roermund, C. W. T., IJlst, L., Baker, A., Wanders, R. J. A., Theodoulou, F. L. and Waterham, H. R. 2020. The Saccharomyces cerevisiae ABCD subfamily transporter Pxa1/Pxa2p co-imports CoASH into the peroxisome. FEBS Letters. https://doi.org/10.1002/1873-3468.13974

Wheat dwarfing influences selection of the rhizosphere microbiome

A - Papers appearing in refereed journals

Kavamura, V. N., Robinson, R. J., Hughes, D., Clark, I. M., Rossmann, M., De Melo, I.S., Hirsch, P. R., Mendes, R. and Mauchline, T. H. 2020. Wheat dwarfing influences selection of the rhizosphere microbiome. Scientific Reports. 10, p. 1452. https://doi.org/10.1038/s41598-020-58402-y

Development of a defined compost system for the study of plant-microbe interactions

A - Papers appearing in refereed journals

Masters-Clark, E., Hirsch, P. R., Clark, I. M., Paradelo, M. and Mauchline, T. H. 2020. Development of a defined compost system for the study of plant-microbe interactions. Scientific Reports. 10, p. 7521. https://doi.org/10.1038/s41598-020-64249-0

Soil as an Extended Composite Phenotype of the Microbial Metagenome

A - Papers appearing in refereed journals

Neal, A. L., Bacq-Labreuil, A., Zhang, X., Clark, I. M., Coleman, K., Mooney, S. J., Ritz, K. and Crawford, J. W. 2020. Soil as an Extended Composite Phenotype of the Microbial Metagenome. Scientific Reports. 10, p. 10649. https://doi.org/10.1038/s41598-020-67631-0

The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response.

A - Papers appearing in refereed journals

Till, C. J., Vicente, J., Zhang, H., Oszvald, M., Deery, M. J., Pastor, V., Lilley, K. S., Ray, R. V., Theodoulou, F. L. and Holdsworth, M. J. 2019. The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response. Plant Direct. 3 (12), p. e00194. https://doi.org/10.1002/pld3.194

The pH optimum of soil exoenzymes adapt to long term changes in soil pH

A - Papers appearing in refereed journals

Puissant, J., Briony, J., Goodall, T., Mang, D., Blaud, A., Gweon, H. S., Malik, A., Jones, D. L., Clark, I. M., Hirsch, P. R. and Griffiths, R. 2019. The pH optimum of soil exoenzymes adapt to long term changes in soil pH. Soil Biology and Biochemistry. 138, p. 107601. https://doi.org/10.1016/j.soilbio.2019.107601

Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil

A - Papers appearing in refereed journals

Fu, Q., Abadie, M., Blaud, A., Carswell, A. M., Misselbrook, T. H., Clark, I. M. and Hirsch, P. R. 2019. Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil . Biology And Fertility Of Soils. pp. 1-10. https://doi.org/10.1007/s00374-019-01411-5

Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat

A - Papers appearing in refereed journals

Kavamura, V. N., Robinson, R. J., Hayat, R., Clark, I. M., Hughes, D. J., Rossmann, M., Hirsch, P. R., Mendes, R. and Mauchline, T. H. 2019. Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat. Frontiers in Microbiology. 10 (2625). https://doi.org/10.3389/fmicb.2019.02625

Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers

A - Papers appearing in refereed journals

Huang, R., McGrath, S. P., Hirsch, P. R., Clark, I. M., Storkey, J., Wu, L., Zhou, J. and Liang, Y. 2019. Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers. Microbial Biotechnology. 12 (6), pp. 1464-1475. https://doi.org/10.1111/1751-7915.13487

Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress

A - Papers appearing in refereed journals

Hartman, S., Liu, Z., van Veen, H., Vicente, J., Reinen, E., Martopawiro, S., Zhang, H., van Dongen, N., Bosman, F., Bassel, G. W., Visser, E. J. W., Bailey-Serres, J., Theodoulou, F. L., Hebelstrup, K. H., Gibbs, D. J., Holdsworth, M. J., Sasidharan, R. and Vosenek, L. A. C. J. 2019. Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. Nature Communications. 10 (4020). https://doi.org/10.1038/s41467-019-12045-4

Mutagenesis separates ATPase and thioesterase activities of the peroxisomal ABC transporter, Comatose

A - Papers appearing in refereed journals

Carrier, D., van Roermund, C., Schaedler, T. A., Rong, H., Ijlist, L., Wanders, r., Baldwin, S., Waterham, H., Theodoulou, F. L. and Baker, A. 2019. Mutagenesis separates ATPase and thioesterase activities of the peroxisomal ABC transporter, Comatose. Scientific Reports. 9. https://doi.org/10.1038/s41598-019-46685-9

Tandem fluorescent protein timers for non-invasive relative protein lifetime measurement in plants

A - Papers appearing in refereed journals

Zhang, H., Linster, E., Gannon, L., Leemhuis, W., Rundle, C., Theodoulou, F. L. and Wirtz, M. 2019. Tandem fluorescent protein timers for non-invasive relative protein lifetime measurement in plants. Plant Physiology. https://doi.org/10.1104/pp.19.00051

Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive

E - Books edited/written by staff member, alone/with others

Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.

The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management

A - Papers appearing in refereed journals

Fu, Q., Clark, I. M., Zhu, J., Hu, H. Q. and Hirsch, P. R. 2018. The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management. Biology And Fertility Of Soils. 54 (1), pp. 163-172. https://doi.org/10.1007/s00374-017-1249-2

Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil

A - Papers appearing in refereed journals

Mauchline, T. H., Hayat, R., Clark, I. M. and Hirsch, P. R. 2018. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil. Letters in Applied Microbiology. 66 (1), pp. 14-18. https://doi.org/10.1111/lam.12821

Land use driven change in soil pH affects microbial carbon cycling processes

A - Papers appearing in refereed journals

Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M, Masson, K.E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G. and Griffiths, R.I. 2018. Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications. 9 (3591). https://doi.org/10.1038/s41467-018-05980-1

Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment

A - Papers appearing in refereed journals

Zhang, H., Gannon, L., Jones, P. D., Rundle, C. A., Hassall, K. L., Gibbs, D. J., Holdsworth, M. J. and Theodoulou, F. L. 2018. Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment. Scientific Reports. 8, p. 15192. https://doi.org/10.1038/s41598-018-33630-5

BIG regulates dynamic adjustment of circadian period in Arabidopsis thaliana

A - Papers appearing in refereed journals

Hearn, T. J, Marti, M. C., Abdul-Awal, S. M., Wimalasekera, R., Stanton, C. R., Haydon, M. J., Theodoulou, F. L., Hannah, M. A. and Webb, A. A. R. 2018. BIG regulates dynamic adjustment of circadian period in Arabidopsis thaliana. Plant Physiology. 178, pp. 358-371. https://doi.org/10.1104/pp.18.00571

Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities

A - Papers appearing in refereed journals

Nessner-Kavamura-Noguchi, V., Hayat, R., Clark, I. M., Rossmann, M., Mendes, R., Hirsch, P. R. and Mauchline, T. H. 2018. Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. Frontiers in Microbiology. 9, p. 1074. https://doi.org/10.3389/fmicb.2018.01074

Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system

A - Papers appearing in refereed journals

De Sosa, L. L., Glanville, C. C., Marshall, M. R., Williams, A. P., Abadie, M., Clark, I. M., Blaud, A. and Jones, D. L. 2018. Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system. Soil Biology and Biochemistry. 120, pp. 153-164. https://doi.org/10.1016/j.soilbio.2018.02.004

Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance

A - Papers appearing in refereed journals

Neal, A. L., Blackwell, M. S. A., Akkari, E., Clark, I. M., Hirsch, P. R. and Guyomar, C. 2018. Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. Plant and Soil. 427, pp. 175-189. https://doi.org/10.1007/s11104-017-3301-2

N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway

A - Papers appearing in refereed journals

Zhang, H., Gannon, L., Hassall, K. L., Deery, M. J., Gibbs, D. J., Holdsworth, M. J., Van der Hoorn, R. A. L., Lilley, K. S. and Theodoulou, F. L. 2018. N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. New Phytologist. 218 (3), pp. 1106-1126. https://doi.org/10.1111/nph.14909

Make Open Science your New Year's Resolution

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. Make Open Science your New Year's Resolution. The Biochemist. 39 (1), p. 3. https://doi.org/10.1042/BIO03901003

We are not alone

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. We are not alone. The Biochemist. 39 (2), p. 3. https://doi.org/10.1042/BIO03902003

Vaccination: still a challenge, always a hope

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. Vaccination: still a challenge, always a hope . The Biochemist. 39 (3), p. 3. https://doi.org/10.1042/BIO03903003

You've never had it so good (in the lab)

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. You've never had it so good (in the lab). The Biochemist. 39 (4), p. 3. https://doi.org/10.1042/BIO03904003

Meeting expectations

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. Meeting expectations. The Biochemist. 39 (5), p. 3. https://doi.org/10.1042/BIO03905003

It's “Goodbye” from me and “Hello” from him

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2017. It's “Goodbye” from me and “Hello” from him . The Biochemist. 39 (6), p. 3. https://doi.org/10.1042/BIO03906003

Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures

A - Papers appearing in refereed journals

Gao, W., Muñoz-Romero, V., Ren, T., Ashton, R. W., Morin, M., Clark, I. M., Powlson, D. S. and Whalley, W. R. 2017. Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures. European Journal of Soil Science. 68 (4), pp. 412-419. https://doi.org/10.1111/ejss.12440

Soil resilience and recovery: rapid community responses to management changes

A - Papers appearing in refereed journals

Hirsch, P. R., Jhurreea, D., Williams, J. K., Murray, P. J., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2017. Soil resilience and recovery: rapid community responses to management changes. Plant and Soil. 412 (1-2), pp. 283-297. https://doi.org/10.1007/s11104-016-3068-x

Land-use influences phosphatase gene microdiversity in soils

A - Papers appearing in refereed journals

Neal, A. L., Rossmann, M., Brearley, C., Akkari, E., Guyomar, C., Clark, I. M., Allen, E. and Hirsch, P. R. 2017. Land-use influences phosphatase gene microdiversity in soils. Environmental Microbiology. 19 (7), p. 2740–2753. https://doi.org/10.1111/1462-2920.13778

Raising a glass to personalized medicine

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. Raising a glass to personalized medicine. The Biochemist. 38 (1), pp. 2-3. https://doi.org/BIO03801002

We need to talk

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. We need to talk. The Biochemist. 38 (2), p. 3. https://doi.org/10.1042/BIO03802003

Genome Editing, biochemical superpower?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. Genome Editing, biochemical superpower? The Biochemist. 38 (3), p. 3. https://doi.org/10.1042/BIO03803003

No man is an island

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. No man is an island. The Biochemist. 38 (4), p. 3. https://doi.org/10.1042/BIO03804003

Ghosts, gases and the Mouse's Petition

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. Ghosts, gases and the Mouse's Petition . The Biochemist. 38 (5), p. 3. https://doi.org/10.1042/BIO03805003

The (Christmas) Tree of Knowledge

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2016. The (Christmas) Tree of Knowledge. The Biochemist. 38 (6), p. 3. https://doi.org/10.1042/BIO03806003

Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome

A - Papers appearing in refereed journals

Xie, W-Y., McGrath, S. P., Su, J. Q., Hirsch, P. R., Clark, I. M., Shen, Q., Zhu, Y-G. and Zhao, F-J. 2016. Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome. Environmental Science & Technology. 50 (23), pp. 12602-12611. https://doi.org/10.1021/acs.est.6b02138

Responses of microbial community from tropical pristine coastal soil to crude oil contamination

A - Papers appearing in refereed journals

Morais, D., Pylro, V., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2016. Responses of microbial community from tropical pristine coastal soil to crude oil contamination. PeerJ. 4. https://doi.org/10.7717/peerj.1733

Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability. Plant and Soil. 405 (1-2), pp. 381-396. https://doi.org/10.1007/s11104-015-2495-4

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen

A - Papers appearing in refereed journals

Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905

The unique contribution of Rothamsted to ecological research at large temporal scales

B - Book chapters etc edited externally

Storkey, J., Macdonald, A. J., Bell, J. R., Clark, I. M., Gregory, A. S., Hawkins, N. J., Hirsch, P. R., Todman, L. C. and Whitmore, A. P. 2016. The unique contribution of Rothamsted to ecological research at large temporal scales. in: Dumbrell, A. J., Kordas, R. L. and Woodward, G. (ed.) Advances in Ecological Research 55: Large-Scale Ecology: Model Systems to Global Perspectives Academic Press, Oxford. pp. 3-42

Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes. Scientific Reports. 6, p. 25581. https://doi.org/10.1038/srep25581

How to move an amphipathic molecule across a lipid bilayer: different mechanisms for different ABC transporters?

A - Papers appearing in refereed journals

Theodoulou, F. L., Carrier, D. J., Schaedler, T. A., Baldwin, S. A. and Baker, A. 2016. How to move an amphipathic molecule across a lipid bilayer: different mechanisms for different ABC transporters? Biochemical Society Transactions. 44 (3), pp. 774-782. https://doi.org/10.1042/BST20160040

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison

A - Papers appearing in refereed journals

Jones, F. P., Clark, I. M., King, R., Shaw, L. J., Woodward, M. J. and Hirsch, P. R. 2016. Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. Scientific Reports. 6, p. 25858. https://doi.org/10.1038/srep25858

Changes and being human

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Changes and being human. The Biochemist. 37 (5), p. 3. https://doi.org/10.1042/BIO03705003

Metatranscriptomic census of active protists in soils

A - Papers appearing in refereed journals

Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M. and Urich, T. 2015. Metatranscriptomic census of active protists in soils. The ISME Journal. 9, pp. 2178-2190. https://doi.org/10.1038/ismej.2015.30

ABC transporter research: going strong 40 years on

A - Papers appearing in refereed journals

Theodoulou, F. L. and Kerr, I. D. 2015. ABC transporter research: going strong 40 years on. Biochemical Society Transactions. 43 (5), pp. 1033-1040. https://doi.org/10.1042/BST20150139

Who wants to live forever?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Who wants to live forever? The Biochemist. 37 (4), p. 3. https://doi.org/10.1042/BIO03704003

Science on screen: what's the drama about accuracy?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Science on screen: what's the drama about accuracy? The Biochemist. 37 (6), p. 3. https://doi.org/10.1042/BIO03706003

Peroxisomal ABC transporters: functions and mechanisms

A - Papers appearing in refereed journals

Baker, A., Carrier, D. J., Schaedler, T. A., Waterham, H. R., Van Roermund, C. W. and Theodoulou, F. L. 2015. Peroxisomal ABC transporters: functions and mechanisms. Biochemical Society Transactions. 43, pp. 959-965. https://doi.org/10.1042/BST20150127

Soil pH determines microbial diversity and composition in the Park Grass Experiment

A - Papers appearing in refereed journals

Zhalnina, K., Dias, R., De Quadros, P. D., Davis-Richardson, A., Camargo, F. A. O., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2015. Soil pH determines microbial diversity and composition in the Park Grass Experiment. Microbial Ecology. 69, pp. 395-406. https://doi.org/10.1007/s00248-014-0530-2

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota

A - Papers appearing in refereed journals

Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

A - Papers appearing in refereed journals

Liang, Y., Wu, Liyou, Clark, I. M., Xue, K., Yang, Y., Van Nostrand, J. D., Deng, Y., He, Z., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun, B. and Zhou, J. 2015. Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity. mBio. 6, pp. e00240-15. https://doi.org/10.1128/mBio.00240-15

Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots

A - Papers appearing in refereed journals

Zhang, H., Deery, M. J., Gannon, L., Powers, S. J., Lilley, K. S. and Theodoulou, F. L. 2015. Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots. Proteomics. 15 (14), pp. 2447-2457. https://doi.org/10.1002/pmic.201400530

The Rothamsted Long-term Experiments

A - Papers appearing in refereed journals

Macdonald, A. J., Powlson, D. S., Poulton, P. R., Watts, C. W., Clark, I. M., Storkey, J., Hawkins, N. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2015. The Rothamsted Long-term Experiments. Aspects of Applied Biology. 128.

Writer's block: seeking the muse when caffeine fails

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Writer's block: seeking the muse when caffeine fails. Biologist. 37 (3), p. 3. https://doi.org/10.1042/BIO03703003

Bang the gong for biochemistry

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Bang the gong for biochemistry. The Biochemist. 37 (1), p. 3.

Keeping an open mind: Sherlock Holmes and the RNA world

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2015. Keeping an open mind: Sherlock Holmes and the RNA world. Biochemist. 37 (2), p. 3.

Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria

A - Papers appearing in refereed journals

Tahseen, Q. and Clark, I. M. 2014. Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria. Journal Of Natural History. 48, pp. 1485-1502. https://doi.org/10.1080/00222933.2013.873088

Scientific crises and the Bluetongue blueprint

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. Scientific crises and the Bluetongue blueprint. The Biochemist. 36 (2), p. 3.

Death, taxes...and metrics

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. Death, taxes...and metrics. The Biochemist. 36 (5), p. 3.

Band of boffins

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. Band of boffins. The Biochemist. 36 (6), p. 3.

Plant peroxisomal ABC transporters: flexible and unusual

B - Book chapters etc edited externally

Theodoulou, F. L., Baldwin, S. A., Baldwin, J. M. and Baker, A. 2014. Plant peroxisomal ABC transporters: flexible and unusual. in: Geisler, M. (ed.) Plant ABC transporters Springer. pp. 77-101

The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment

C2 - Non-edited contributions to conferences

Robinson, R. R., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2014. The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment. American Phytopathological Society (APS).

Data analysis for 16S microbial profiling from different benchtop sequencing platforms

A - Papers appearing in refereed journals

Pylro, V. S., Roesch, L. F. W., Morais, D. K., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2014. Data analysis for 16S microbial profiling from different benchtop sequencing platforms. Journal of Microbiological Methods. 107 (December), pp. 30-37. https://doi.org/10.1016/j.mimet.2014.08.018

Replace, reduce, refine - and debate

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. Replace, reduce, refine - and debate. Biochemist. 36(3), p. 3.

(Real) life after a PhD

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. (Real) life after a PhD. Biochemist. 36(4), p. 3.

Coenzyme A and its derivatives: renaissance of a textbook classic

A - Papers appearing in refereed journals

Theodoulou, F. L., Sibon, O. C. M., Jackowski, S. and Gout, I. 2014. Coenzyme A and its derivatives: renaissance of a textbook classic. Biochemical Society Transactions. 42, pp. 1025-1032. https://doi.org/10.1042/BST20140176

Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation

A - Papers appearing in refereed journals

Mendiondo, G. M., Medhurst, A., Van Roermund, C. W., Zhang, X., Devonshire, J., Scholefield, D., Fernandez, J., Axcell, B., Ramsay, L., Waterham, H. R., Waugh, R., Theodoulou, F. L. and Holdsworth, M. J. 2014. Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation. Journal of Experimental Botany. 65, pp. 4833-4847. https://doi.org/10.1093/jxb/eru243

One click and it's gone: posterity in the electronic era

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2014. One click and it's gone: posterity in the electronic era. Biochemist. 36(1), p. 3.

Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors

A - Papers appearing in refereed journals

Gibbs, D. J., Isa, N. M., Movahedi, M., Lozano-Juste, J., Mendiondo, G. M., Berckhan, S., Marin-De La Rosa, N., Vicente Conde, J. V., Sousa Correia, C., Pearce, S. P., Bassel, G. W., Hamali, B., Talloji, P., Tome, D. F. A., Coego, A., Beynon, J., Alabadi, D., Bachmair, A., Leon, J., Gray, J. E., Theodoulou, F. L. and Holdsworth, M. J. 2014. Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell. 53, pp. 369-379. https://doi.org/10.1016/j.molcel.2013.12.020

Plant peroxisomes: protein import, dynamics and metabolite transport

B - Book chapters etc edited externally

Kaur, N., Cross, L., Theodoulou, F. L., Baker, A. and Hu, J. 2013. Plant peroxisomes: protein import, dynamics and metabolite transport. in: Liu, B. and Assmann, S. (ed.) Plant cell biology Springer, New York. pp. 25pp

Metabolite transporters of the plant peroxisomal membrane: known and unknown

B - Book chapters etc edited externally

Linka, N. and Theodoulou, F. L. 2013. Metabolite transporters of the plant peroxisomal membrane: known and unknown. in: Delrio, L. A. (ed.) Peroxisomes and their key role in cellular signaling and metabolism Springer, Dordrecht. pp. 169-194

What have plants done for us?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. What have plants done for us? Biochemist. 35(5), p. 3.

The beauty of public engagement

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. The beauty of public engagement. Biochemist. 35(4), p. 3.

The biochemistry of bad behaviour

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. The biochemistry of bad behaviour. Biochemist. 35(6), p. 3.

Potential mineralization and nitrification in volcanic grassland soils in Chile

A - Papers appearing in refereed journals

Cardenas, L. M., Hatch, D. J., Scholefield, D., Jhurreea, D., Clark, I. M., Hirsch, P. R., Salazar, F., Rao-Ravella, S. and Alfaro, M. 2013. Potential mineralization and nitrification in volcanic grassland soils in Chile. Soil Science and Plant Nutrition. 59, pp. 380-391. https://doi.org/10.1080/00380768.2013.789395

Culture-independent molecular approaches to microbial ecology in soil and rhizosphere

B - Book chapters etc edited externally

Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2013. Culture-independent molecular approaches to microbial ecology in soil and rhizosphere. in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 45-55

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

A - Papers appearing in refereed journals

Zhalnina, K., De Quadros, P. D., Gano, K. A., Davis-Richardson, A., Fagen, J. R., Brown, C. T., Giongo, A., Drew, J. C., Sayavedra-Soto, L. A., Arp, D. J., Camargo, F. A. O., Daroub, S. H., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2013. Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments. Frontiers in Microbiology. 4, p. 104. https://doi.org/10.3389/fmicb.2013.00104

Getting an even break

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. Getting an even break. Biochemist. 35(3), p. 3.

Floral monsters and murderous mirror images

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. Floral monsters and murderous mirror images. Biochemist. 35(2), p. 3.

Peroxisome membrane proteins: multiple trafficking routes and multiple functions?

A - Papers appearing in refereed journals

Theodoulou, F. L., Bernhardt, K., Linka, N. and Baker, A. 2013. Peroxisome membrane proteins: multiple trafficking routes and multiple functions? Biochemical Journal. 451, pp. 345-352. https://doi.org/10.1042/BJ20130078

The impact agenda: when Gladstone met Faraday

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2013. The impact agenda: when Gladstone met Faraday. Biochemist. 35(1), p. 3.

Intrinsic acyl-CoA thioesterase activity of a peroxisomal ATP binding cassette transporter is required for transport and metabolism of fatty acids

A - Papers appearing in refereed journals

De Marcos Lousa, C., Van Roermund, C. W. T., Postis, V. L. G., Dietrich, D., Kerr, I. D., Wanders, R. J. A., Baldwin, S. A., Baker, A. and Theodoulou, F. L. 2013. Intrinsic acyl-CoA thioesterase activity of a peroxisomal ATP binding cassette transporter is required for transport and metabolism of fatty acids. Proceedings of the National Academy of Sciences. 110, pp. 1279-1284. https://doi.org/10.1073/pnas.1218034110

Structure, fluctuation and magnitude of a natural grassland soil metagenome

A - Papers appearing in refereed journals

Delmont, T. O., Prestat, E., Keegan, K. P., Faubladier, M., Robe, P., Clark, I. M., Pelletier, E., Hirsch, P. R., Meyer, F., Gilbert, J. A., Le Paslier, D., Simonet, P. and Vogel, T. M. 2012. Structure, fluctuation and magnitude of a natural grassland soil metagenome. The ISME Journal. 6, pp. 1677-1687. https://doi.org/10.1038/ismej.2011.197

Science under siege

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. Science under siege. The Biochemist. 34 (5), p. 3.

Reinventing the polytechnic?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. Reinventing the polytechnic? Biologist. 34(4), p. 3.

Could Jurassic Park ever come true?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. Could Jurassic Park ever come true? Biochemist. 34(6), p. 3.

Seed storage oil catabolism: a story of give and take

A - Papers appearing in refereed journals

Theodoulou, F. L. and Eastmond, P. J. 2012. Seed storage oil catabolism: a story of give and take. Current Opinion in Plant Biology. 15 (3), pp. 322-328. https://doi.org/10.1016/j.pbi.2012.03.017

Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity

A - Papers appearing in refereed journals

Nyathi, Y., Zhang, X., Baldwin, J. M., Bernhardt, K., Johnson, B., Baldwin, S. A., Theodoulou, F. L. and Baker, A. 2012. Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity. FEBS Letters. 586 (16), pp. 2280-2286. https://doi.org/10.1016/j.febslet.2012.05.065

What's in a name?

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. What's in a name? Biochemist. 34(1), p. 3.

Science diplomacy and the taxi test

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. Science diplomacy and the taxi test. Biochemist. 34(2), p. 3.

Goodbye and hello

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2012. Goodbye and hello. The Biochemist. 34 (3), p. 3.

A novel function for a redox-related LEA protein (SAG21/AtLEA5) in root development and biotic stress responses

A - Papers appearing in refereed journals

Salleh, F. M., Evans, K., Goodall, B., Machin, H., Mowla, S. B., Mur, L. A. J., Runions, J., Theodoulou, F. L., Foyer, C. H. and Rogers, H. J. 2012. A novel function for a redox-related LEA protein (SAG21/AtLEA5) in root development and biotic stress responses. Plant, Cell and Environment. 35 (2), pp. 418-429. https://doi.org/10.1111/j.1365-3040.2011.02394.x

Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment

A - Papers appearing in refereed journals

Clark, I. M., Buchkina, N., Jhurreea, D., Goulding, K. W. T. and Hirsch, P. R. 2012. Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment. Philosophical Transactions of the Royal Society B-Biological Sciences. 367, pp. 1235-1244. https://doi.org/10.1098/rstb.2011.0314

The China issue

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. The China issue. The Biochemist. 33 (5), p. 3.

Chimpanzees, Brussels sprouts and poor laboratory practice

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. Chimpanzees, Brussels sprouts and poor laboratory practice. Biochemist. 33(6), p. 3.

The scientific seasons

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. The scientific seasons. The Biochemist. 33 (3), p. 3.

Scientific fate

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. Scientific fate. The Biochemist. 33 (4), p. 3.

Mammalian peroxisomal ABC transporters: from endogenous substrates to pathology and clinical significance

A - Papers appearing in refereed journals

Kemp, S., Theodoulou, F. L. and Wanders, R. J. A. 2011. Mammalian peroxisomal ABC transporters: from endogenous substrates to pathology and clinical significance. British Journal Of Pharmacology. 164 (7), pp. 1753-1766. https://doi.org/10.1111/j.1476-5381.2011.01435.x

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

A - Papers appearing in refereed journals

Gibbs, D. J., Lee, S. C., Isa, N. M., Gramuglia, S., Fukao, T., Bassel, G. W., Correia, C. S., Corbineau, F., Theodoulou, F. L., Bailey-Serres, J. and Holdsworth, M. J. 2011. Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature. 479 (7373), pp. 415-418. https://doi.org/10.1038/nature10534

Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression

A - Papers appearing in refereed journals

Zhang, X., De Marcos Lousa, C., Schutte-Lensink, N., Ofman, R., Wanders, R. J., Baldwin, S. A., Baker, A., Kemp, S. and Theodoulou, F. L. 2011. Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression. Biochemical Journal. 436, pp. 547-557. https://doi.org/10.1042/BJ20110249

Metagenomic comparison of direct and indirect soil DNA extraction approaches

A - Papers appearing in refereed journals

Delmont, T. O., Robe, P., Clark, I. M., Simonet, P. and Vogel, T. M. 2011. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86 (3), pp. 397-400. https://doi.org/10.1016/j.mimet.2011.06.013

Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control

C1 - Edited contributions to conferences/learned societies

Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2011. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control.

Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia

A - Papers appearing in refereed journals

Rosso, L. C., Finetti-Sialer, M. M., Hirsch, P. R., Ciancio, A., Kerry, B. R. and Clark, I. M. 2011. Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia. Applied Microbiology and Biotechnology. 90, pp. 1981-1994. https://doi.org/10.1007/s00253-011-3282-7

Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil

A - Papers appearing in refereed journals

Macdonald, C. A., Clark, I. M., Hirsch, P. R., Zhao, F-J. and McGrath, S. P. 2011. Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil. Applied and Environmental Microbiology. 77, pp. 4626-4633. https://doi.org/10.1128/AEM.02232-10

Impacts of land use change on denitrifying bacteria and nitrous oxide emissions

C2 - Non-edited contributions to conferences

Hirsch, P. R., Jhurreea, D., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2011. Impacts of land use change on denitrifying bacteria and nitrous oxide emissions. Abstracts Theo Murphy Scientific Meeting: Nitrous Oxide, the Forgotten Greenhouse Gas, Chicheley, 23-24 May 2011 .

Editorial: Time to think

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. Editorial: Time to think. Biochemist. 33(2), p. 3.

Editorial: The next hundred years

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2011. Editorial: The next hundred years. Biochemist. 33(1), p. 3.

Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils

A - Papers appearing in refereed journals

Macdonald, C. A., Clark, I. M., Zhao, F-J., Hirsch, P. R., Singh, B. K. and McGrath, S. P. 2011. Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biology and Biochemistry. 43, pp. 932-941. https://doi.org/10.1016/j.soilbio.2011.01.004

Accessing the soil metagenome for studies of microbial diversity

A - Papers appearing in refereed journals

Delmont, T. O., Robe, P., Cecillon, S., Clark, I. M., Constancias, F., Simonet, P., Hirsch, P. R. and Vogel, T. M. 2011. Accessing the soil metagenome for studies of microbial diversity. Applied and Environmental Microbiology. 77 (4), pp. 1315-1324. https://doi.org/10.1128/AEM.01526-10

Peroxisomal transport systems: roles in signaling and metabolism

B - Book chapters etc edited externally

Theodoulou, F. L., Zhang, X., De Marcos Lousa, C., Nyathi, Y. and Baker, A. 2011. Peroxisomal transport systems: roles in signaling and metabolism. in: Geisler, M. and Venema, K. (ed.) Transporters and pumps in plant signaling Springer, Berlin. pp. 327-351

Q&A: Professor Maurice Moloney

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. Q&A: Professor Maurice Moloney. The Biochemist. 32 (3), pp. 39-40. https://doi.org/10.1042/BIO03203039

Soil without plants: the consequences for microorganisms and mesofauna

C1 - Edited contributions to conferences/learned societies

Goulding, K. W. T., Murray, P. J., Sohi, S. P., Gilliam, L. M., Williams, J. K., Clark, I. M. and Hirsch, P. R. 2010. Soil without plants: the consequences for microorganisms and mesofauna. Gilkes, R. and Prakongkep, N. (ed.) Proceedings 19th World Congress of Soil Science, Brisbane, 1-6 August 2010 . Australian Society of Soil Science, Warragul. pp. 1622-1625

Editorial: The student issue

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. Editorial: The student issue. Biochemist. 32(5), p. 5.

Editorial: Christmas cheer

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. Editorial: Christmas cheer. The Biochemist. 32(6), p. 3.

The Arabidopsis peroxisomal ABC transporter, Comatose, complements the Saccharomyces cerevisiae pxa1 pxa2delta mutant for metabolism of long-chain fatty acids and exhibits fatty acyl-CoA-stimulated ATPase activity

A - Papers appearing in refereed journals

Nyathi, Y., De Marcos Lousa, C., Van Roermund, C. W., Wanders, R. J. A., Johnson, B., Baldwin, S. A., Theodoulou, F. L. and Baker, A. 2010. The Arabidopsis peroxisomal ABC transporter, Comatose, complements the Saccharomyces cerevisiae pxa1 pxa2delta mutant for metabolism of long-chain fatty acids and exhibits fatty acyl-CoA-stimulated ATPase activity. Journal of Biological Chemistry. 285, pp. 29892-29902. https://doi.org/10.1074/jbc.M110.151225

Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK

C2 - Non-edited contributions to conferences

Wu, Liyou, Liang, Y., Clark, I. M., Wue, K., Deng, Y., He, Z., Van Nostrand, J., Macdonald, C., Hirsch, P. R., McGrath, S. P. and Zhou, J. 2010. Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .

Relative impact of soil, metal source and metal concentration on bacterial community structure and community tolerance

A - Papers appearing in refereed journals

Macdonald, C. A., Yang, X., Clark, I. M., Zhao, F-J., Hirsch, P. R. and McGrath, S. P. 2010. Relative impact of soil, metal source and metal concentration on bacterial community structure and community tolerance. Soil Biology and Biochemistry. 42, pp. 1408-1417. https://doi.org/10.1016/j.soilbio.2010.05.002

Targeting the active bacterial communities in soil pores

C2 - Non-edited contributions to conferences

Mccabe, D., Clark, I. M., Sohi, S., Shaw, E. and Hirsch, P. R. 2010. Targeting the active bacterial communities in soil pores. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .

Effects of long-term fertilization on spatial distribution patterns of microbial functional genes from the Rothamsted Experimental site

C2 - Non-edited contributions to conferences

Liang, Y., Wu, Liyou, Clark, I. M., Xue, K., Deng, Y., He, Z., Hirsch, P. R., McGrath, S. P. and Zhou, J. 2010. Effects of long-term fertilization on spatial distribution patterns of microbial functional genes from the Rothamsted Experimental site. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .

Long-term agricultural experiments reveal N influence on ammonia oxidizers and the predominance of CA. nitrososphaera

C2 - Non-edited contributions to conferences

Giongo, A., Gano,K., Roesch, L., Casella, G., Daroub, S., Ramiez, K., Sayavedra-Soto, L., Arp, D., Clark, I. M., Hirsch, P. R., McGrath, S. P. and Triplett, E. 2010. Long-term agricultural experiments reveal N influence on ammonia oxidizers and the predominance of CA. nitrososphaera. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .

Soil metagenomics: can we access the diversity?

C2 - Non-edited contributions to conferences

Delmont, T., Cecillon, S., Clark, I. M., Simonet, P., Hirsch, P. R. and Vogel, T. 2010. Soil metagenomics: can we access the diversity? Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .

The genome - 10 years on

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. The genome - 10 years on. Biochemist. August 2010, p. 3.

Crunch time for science

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. Crunch time for science. Biochemist. April 2010, p. 5.

Science and the media

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. Science and the media. Biochemist. February 2010, p. 3.

The carbon cost of conferences

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2010. The carbon cost of conferences. Biochemist. June 2010, p. 3.

Culture-independent molecular techniques for soil microbial ecology

A - Papers appearing in refereed journals

Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2010. Culture-independent molecular techniques for soil microbial ecology. Soil Biology and Biochemistry. 42 (6), pp. 878-887. https://doi.org/10.1016/j.soilbio.2010.02.019

Role of antecedent soil moisture on microbial populations involved in gaseous N2O emissions - use of isotopomers to understand sources

C2 - Non-edited contributions to conferences

Cardenas, L. M., Bol, R., Bergstermann, A., Meijide, A., Hirsch, P. R., Jhurreea, D., Clark, I. M., Gilliam, L., Goulding, K. W. T., Well, R. and Scholefield, D. 2010. Role of antecedent soil moisture on microbial populations involved in gaseous N2O emissions - use of isotopomers to understand sources. Abstracts Stable Isotope Mass-Spectrometry User Group (SIMSUG) Meeting, Exeter, 28-30 April 2010 .

Are long-term changes in soil organic matter reflected in the soil communities?

C2 - Non-edited contributions to conferences

Murray, P. J., Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Brookes, P. C. 2009. Are long-term changes in soil organic matter reflected in the soil communities?

The NBDs that wouldn't die: A cautionary tale of the use of isolated nucleotide binding domains of ABC transporters

A - Papers appearing in refereed journals

De Marcos Lousa, C., Dietrich, D., Johnson, B., Baldwin, S. A., Holdsworth, M. J., Theodoulou, F. L. and Baker, A. 2009. The NBDs that wouldn't die: A cautionary tale of the use of isolated nucleotide binding domains of ABC transporters. Communicative and Integrative Biology. 2 (2), pp. 97-99. https://doi.org/10.4161/cib.7621

Are long-term changes in soil organic matter reflected in the soil communities?

C2 - Non-edited contributions to conferences

Brookes, P. C., Hirsch, P. R., Gilliam, L. M., Clark, I. M., Sohi, S. P., Williams, J. K. and Murray, P. J. 2009. Are long-term changes in soil organic matter reflected in the soil communities? Abstracts 2009 International Annual Meetings of ASA-CSSA-SSSA: Footprints in the Landscape: Sustainability through Plant and Soil Sciences, Pittsburgh, 1-5 November 2009 .

Are long-term changes in soil organic matter reflected in the soil communities?

C2 - Non-edited contributions to conferences

Murray, P. J., Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Brookes, P. C. 2009. Are long-term changes in soil organic matter reflected in the soil communities? Abstracts Forming Bridges in a Changing World: Society of Nematologists and Soil Ecology Society Conference, Burlington, 12-15 July 2009 .

Through the keyhole: a key to open the bacterial lock; aka using BrdU to target pore space diversity

C2 - Non-edited contributions to conferences

Mccabe, D., Clark, I. M., Sohi, S. P., Shaw, L. and Hirsch, P. R. 2009. Through the keyhole: a key to open the bacterial lock; aka using BrdU to target pore space diversity. Abstracts Micro Soil: Integrating Biological, Physical and Chemical Techniques for the Study of Soil Micro-Habitats, Dundee, 16-17 September 2009 . pp. 24-25

Microbial diversity maintained in soils starved of plant inputs for 50 years

C2 - Non-edited contributions to conferences

Clark, I. M., Gilliam, L. M., Sohi, S. P., Williams, J., Murray, P. J. and Hirsch, P. R. 2009. Microbial diversity maintained in soils starved of plant inputs for 50 years. Abstracts BAGECO 10: Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Uppsala, 15-19 June 2009 . pp. 119

What plants do for soil and what happens after they've gone

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2009. What plants do for soil and what happens after they've gone. Abstracts Plant Soil Interactions: Joint Meeting of the Scottish Root Group and the Scottish Discussion Group of the British Society of Soil Science, Aberdeen, 3 November 2009 .

Sequencing the microbial metagenome of an iconic grassland soil, the Rothamsted Park Grass Experiment

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2009. Sequencing the microbial metagenome of an iconic grassland soil, the Rothamsted Park Grass Experiment. Abstracts BAGECO 10: Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Uppsala, 15-19 June 2009 . pp. 73

Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities

A - Papers appearing in refereed journals

Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Murray, P. J. 2009. Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities. Soil Biology and Biochemistry. 41 (9), pp. 2021-2024. https://doi.org/10.1016/j.soilbio.2009.07.011

Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia

A - Papers appearing in refereed journals

Atkins, S. D., Peteira, B., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia. Annals of Applied Biology - AAB. 155, pp. 143-152. https://doi.org/10.1111/j.1744-7348.2009.00333.x

Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia

A - Papers appearing in refereed journals

Manzanilla-Lopez, R. H., Atkins, S. D., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia. Biocontrol Science and Technology. 19, pp. 391-406. https://doi.org/10.1080/09583150902783793

Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control

C2 - Non-edited contributions to conferences

Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S., Hirsch, P. R. and Kerry, B. R. 2009. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control. Abstracts IOBC 5th Meeting on Multitrophic Interactions in Soil, Uppsala, 11-13 June 2009 . pp. 27

The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis

A - Papers appearing in refereed journals

Holman, T. J., Jones, P. D., Russell, L., Medhurst, A., Ubeda-Tomas, S., Talloji, P., Marquez, J., Schmuths, H., Tung, S-A., Taylor, I., Footitt, S., Bachmair, A., Theodoulou, F. L. and Holdsworth, M. J. 2009. The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis. Proceedings of the National Academy of Sciences. 106, pp. 4549-4554. https://doi.org/10.1073/pnas.0810280106

Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres

A - Papers appearing in refereed journals

Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2009. Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres. Letters in Applied Microbiology. 48 (1), pp. 71-76. https://doi.org/10.1111/j.1472-765X.2008.02489.x

Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series

A - Papers appearing in refereed journals

Dietrich, D., Schmuths, H., De Marcos Lousa, C., Baldwin, J. M., Baldwin, S. A., Baker, A., Theodoulou, F. L. and Holdsworth, M. J. 2009. Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series. Molecular Biology Of The Cell. 20, pp. 530-543. https://doi.org/10.1091/mbc.E08-07-0745

Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana

A - Papers appearing in refereed journals

Linka, N., Theodoulou, F. L., Haslam, R. P., Linka, M., Napier, J. A., Neuhaus, H. E. and Weber, A. P. M. 2008. Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. The Plant Cell. 20, pp. 3241-3257. https://doi.org/10.1105/tpc.108.062042

Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type

C2 - Non-edited contributions to conferences

Macdonald, C., Yang, X., Clark, I. M., Hirsch, P. R. and McGrath, S. P. 2008. Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type. Abstracts 12th International Symposium on Microbial Ecology (ISME12): Microbial Diversity - Sustaining the Blue Planet, Cairns, 17-22 August 2008 .

Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent

C2 - Non-edited contributions to conferences

Kerry, B. R., Clark, I. M., Esteves, I., Finetti, M., Hirsch, P. R., Gomez-Gil, L., Manzanilla-Lopez, R. H. and Rosso, L. C. 2008. Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent. Abstracts 6th Seminario Cientifico Internacional de Sanidad Vegetal, Habana, 22-26 September 2008 .

Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment

C2 - Non-edited contributions to conferences

Clark, I. M. 2008. Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment. Abstracts BSSS Autumn Meeting on Something Old, Something New: Integrating Molecular Biology with Other Techniques in Soil Science, Harpenden, 17 September 2008 .

A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale

A - Papers appearing in refereed journals

Dennis, P. G., Miller, A. J., Clark, I. M., Taylor, R. G., Valsami-Jones, E. and Hirsch, P. R. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75, pp. 12-18. https://doi.org/10.1016/j.mimet.2008.04.013

Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition

C2 - Non-edited contributions to conferences

Finetti-Sialer, M., Hirsch, P. R., Kerry, B. R. and Clark, I. M. 2008. Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition. Abstracts 5th International Congress of Nematology, Brisbane, 13-18 July 2008 .

Plant ABC proteins - a unified nomenclature and updated inventory

A - Papers appearing in refereed journals

Verrier, P. J., Bird, D., Burla, B., Dassa, E., Forestier, C., Geisler, M., Klein, M., Kolukisaoglu, U., Lee, Youngsook, Martinoia, E., Murphy, A., Rea, P. A., Samuels, L., Shulz, B., Spalding, E. J., Yazaki, K. and Theodoulou, F. L. 2008. Plant ABC proteins - a unified nomenclature and updated inventory. Trends in Plant Science. 13, pp. 151-159. https://doi.org/10.1016/j.tplants.2008.02.001

Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment

A - Papers appearing in refereed journals

Clark, I. M. and Hirsch, P. R. 2008. Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment. Soil Biology and Biochemistry. 40, pp. 1090-1102. https://doi.org/10.1016/j.soilbio.2007.11.021

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

A - Papers appearing in refereed journals

Rensing, S. A., Lang, D., Zimmer, A. D., Terry, A., Salamov, A., Shapiro, H., Nishiyama, T., Perroud, P-F., Lindquist, E. A., Kamisugi, Y., Tanahashi, T., Sakakibara, K., Fujita, T., Oishi, K., Shin, T., Kuroki, Y., Toyoda, A., Theodoulou, F. L., Verrier, P. J., Quatrano, R. S. and Boore, J. L. 2008. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science - AAAS. 319 (5859), pp. 64-69. https://doi.org/10.1126/science.1150646

Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis

A - Papers appearing in refereed journals

Carrera, E., Holman, T., Medhurst, A., Dietrich, D., Footitt, S., Theodoulou, F. L. and Holdsworth, M. J. 2007. Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. The Plant Journal. 53 (2), pp. 214-224. https://doi.org/10.1111/j.1365-313X.2007.03331.x

The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis

A - Papers appearing in refereed journals

Footitt, S., Dietrich, D., Fait, A., Fernie, A. R., Holdsworth, M. J., Baker, A. and Theodoulou, F. L. 2007. The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis. Plant Physiology. 144 (July), pp. 1467-1480. https://doi.org/10.1104/pp.107.099903

Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination

A - Papers appearing in refereed journals

Carrera, E., Holman, T., Medhurst, A., Peer, W., Schmuths, H., Footitt, S., Theodoulou, F. L. and Holdsworth, M. J. 2007. Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination. Plant Physiology. 143, pp. 1669-1679. https://doi.org/10.1104/pp.107.096057

Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature

A - Papers appearing in refereed journals

Cookson, W. R., Osman, M., Marschner, P., Abaye, D. A., Clark, I. M., Murphy, D. V., Stockdale, E. A. and Watson, C. A. 2007. Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature. Soil Biology and Biochemistry. 39, pp. 744-756. https://doi.org/10.1016/j.soilbio.2006.09.022

DNA fingerprinting methodology to monitor infectivity, competition and rhizosphere competence of Pochonia chlamydosporia isolates within bulk soil, rhizoshere and Meloidogyne incognita egg masses

C2 - Non-edited contributions to conferences

Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S., Hirsch, P. R. and Kerry, B. R. 2006. DNA fingerprinting methodology to monitor infectivity, competition and rhizosphere competence of Pochonia chlamydosporia isolates within bulk soil, rhizoshere and Meloidogyne incognita egg masses. Abstracts AAB Conference on Advances in Nematology, London, 12 December 2006 .

Assessing genetic diversity of Pochonia chlamydosporia populations using ERIC primers

C2 - Non-edited contributions to conferences

Manzanilla-Lopez, R. H., Clark, I. M., Hirsch, P. R. and Kerry, B. R. 2006. Assessing genetic diversity of Pochonia chlamydosporia populations using ERIC primers. Abstracts 38th ONTA Annual Meeting, San Jose, 26-30 June 2006 .

Monitoring active bacterial communities in soil

C2 - Non-edited contributions to conferences

Clark, I. M., Cookson, W. R., Hampshire, D. and Hirsch, P. R. 2006. Monitoring active bacterial communities in soil. Abstracts 158th Meeting of the Society for General Microbiology, Warwick, 3-6 April 2006 . pp. 52

The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism

A - Papers appearing in refereed journals

Rottensteiner, H. and Theodoulou, F. L. 2006. The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 1763 (12), pp. 1527-1540. https://doi.org/10.1016/j.bbamcr.2006.08.012

Yeast complementation reveals a role for an Arabidopsis thaliana late embryogenesis abundant (LEA)-like protein in oxidative stress tolerance

A - Papers appearing in refereed journals

Mowla, S. B., Cuypers, A., Driscoll, S. P., Kiddle, G., Thomson, J., Foyer, C. H. and Theodoulou, F. L. 2006. Yeast complementation reveals a role for an Arabidopsis thaliana late embryogenesis abundant (LEA)-like protein in oxidative stress tolerance. The Plant Journal. 48 (5), pp. 743-756. https://doi.org/10.1111/j.1365-313X.2006.02911.x

Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis

A - Papers appearing in refereed journals

Footitt, S., Marquez, J., Schmuths, H., Baker, A., Theodoulou, F. L. and Holdsworth, M. 2006. Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis. Journal of Experimental Botany. 57 (11), pp. 2805-2814. https://doi.org/10.1093/jxb/erl045

The influence of season, agricultural management and soil properties on gross nitrogen transformations and bacterial community structure

A - Papers appearing in refereed journals

Cookson, W. R., Marschner, P., Clark, I. M., Milton, N., Smirk, M. N., Murphy, D. V., Osman, M., Stockdale, E. A. and Hirsch, P. R. 2006. The influence of season, agricultural management and soil properties on gross nitrogen transformations and bacterial community structure. Australian journal of soil research. 44, pp. 453-465. https://doi.org/10.1071/SR05042

Distribution of environmental mycobacteria in Karonga District, Northern Malawi

A - Papers appearing in refereed journals

Chilima, B. Z., Clark, I. M., Floyd, S., Fine, P. E. M. and Hirsch, P. R. 2006. Distribution of environmental mycobacteria in Karonga District, Northern Malawi. Applied and Environmental Microbiology. 72 (4), pp. 2343-2350. https://doi.org/10.1128/AEM.72.4.2343-2350.2006

Chewing the fat: beta-oxidation in signalling and development

A - Papers appearing in refereed journals

Baker, A., Graham, I. A., Holdsworth, M., Smith, S. M. and Theodoulou, F. L. 2006. Chewing the fat: beta-oxidation in signalling and development. Trends in Plant Science. 11 (3), pp. 124-132. https://doi.org/10.1016/j.tplants.2006.01.005

Peroxisomal ABC transporters

A - Papers appearing in refereed journals

Theodoulou, F. L., Holdsworth, M. and Baker, A. 2006. Peroxisomal ABC transporters. FEBS Letters. 580 (4), pp. 1139-1155. https://doi.org/10.1016/j.febslet.2005.12.095

Impact of the nematophagous fungus Pochonia chlamydosporia on nematode and microbial populations

A - Papers appearing in refereed journals

Tahseen, Q., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2005. Impact of the nematophagous fungus Pochonia chlamydosporia on nematode and microbial populations. Communications in Agricultural and Applied Biological Sciences. 70(1), pp. 81-86.

Ascorbate content of wheat leaves is not determined by maximal L-galactono-1,4-lactone dehydrogenase (GalLDH) activity under drought stress

A - Papers appearing in refereed journals

Bartoli, C. G., Guiamet, J. J., Kiddle, G., Pastori, G. M., Di Cagno, R., Theodoulou, F. L. and Foyer, C. H. 2005. Ascorbate content of wheat leaves is not determined by maximal L-galactono-1,4-lactone dehydrogenase (GalLDH) activity under drought stress. Plant, Cell and Environment. 28 (9), pp. 1073-1081. https://doi.org/10.1111/j.1365-3040.2005.01338.x

Jasmonic acid levels are reduced in COMATOSE ATP-binding cassette transporter mutants. Implications for transport of jasmonate precursors into peroxisomes

A - Papers appearing in refereed journals

Theodoulou, F. L., Job, K., Slocombe, S. P., Footitt, S., Holdsworth, M., Baker, A., Larson, T. R. and Graham, I. A. 2005. Jasmonic acid levels are reduced in COMATOSE ATP-binding cassette transporter mutants. Implications for transport of jasmonate precursors into peroxisomes. Plant Physiology. 137, pp. 835-840.

The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus

A - Papers appearing in refereed journals

Atkins, S. D., Clark, I. M., Pande, S., Hirsch, P. R. and Kerry, B. R. 2005. The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus. FEMS Microbiology Ecology. 51 (2), pp. 257-264. https://doi.org/10.1016/j.femsec.2004.09.002

Impact of genetically modified bacterial inoculants on the soil microbial community

C1 - Edited contributions to conferences/learned societies

Hirsch, P. R. and Clark, I. M. 2004. Impact of genetically modified bacterial inoculants on the soil microbial community. GM Crops - Ecological Dimensions. Aspects of Applied Biology 74 . pp. 141-153

Fungal molecular diagnostics of nematophagous fungi

C1 - Edited contributions to conferences/learned societies

Atkins, S. D., Clark, I. M., Morton, C. O. and Kerry, B. R. 2004. Fungal molecular diagnostics of nematophagous fungi.

Investigation of three nematophagous fungi in two potato cyst nematode suppressive soils

C1 - Edited contributions to conferences/learned societies

Atkins, S. D., Sosnowska, D., Evans, V. J., Clark, I. M., Hirsch, P. R. and Kerry, B. R. 2004. Investigation of three nematophagous fungi in two potato cyst nematode suppressive soils.

Comparison of mitochondrial ascorbate peroxidase in the cultivated tomato, Lycopersicon esculentum , and its wild, salt-tolerant relative, L. pennellii - a role for matrix isoforms in protection against oxidative damage

A - Papers appearing in refereed journals

Mittova, V., Theodoulou, F. L., Kiddle, G., Volokita, M., Tal, M., Foyer, C. H. and Guy, M. 2004. Comparison of mitochondrial ascorbate peroxidase in the cultivated tomato, Lycopersicon esculentum , and its wild, salt-tolerant relative, L. pennellii - a role for matrix isoforms in protection against oxidative damage. Plant, Cell and Environment. 27 (2), pp. 237-250. https://doi.org/10.1046/j.1365-3040.2004.01150.x

Conjugation and transport of xenobiotics and natural products

C2 - Non-edited contributions to conferences

Theodoulou, F. L., He, X. and Lao, S-H. 2004. Conjugation and transport of xenobiotics and natural products.

Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, using real-time PCR

C2 - Non-edited contributions to conferences

Atkins, S. D., Clark, I. M., Sosnowska, D., Hirsch, P. R. and Kerry, B. R. 2003. Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, using real-time PCR. Abstracts 11th International Congress on Molecular Plant Microbe Interactions, St Petersburg, 18-27 July 2003 .

Control of ascorbate synthesis by respiration and its implications for stress responses

C2 - Non-edited contributions to conferences

Bartoli, C. G., Millar, A. H., Mittova, V., Kiddle, G., Heazlewood, J. L., Theodoulou, F. L. and Foyer, C. H. 2003. Control of ascorbate synthesis by respiration and its implications for stress responses.

Coordinate induction of glutathione biosynthesis and glutathione-metabolizing enzymes is correlated with salt tolerance in tomato

A - Papers appearing in refereed journals

Mittova, V., Theodoulou, F. L., Kiddle, G., Gomez, L., Volokita, M., Tal, M., Foyer, C. H. and Guy, M. 2003. Coordinate induction of glutathione biosynthesis and glutathione-metabolizing enzymes is correlated with salt tolerance in tomato. FEBS Letters. 554 (3), pp. 417-421. https://doi.org/10.1016/S0014-5793(03)01214-6

Vorticella sp. infestations in nematodes: a report

A - Papers appearing in refereed journals

Tahseen, Q., Clark, I. M. and Kerry, B. R. 2003. Vorticella sp. infestations in nematodes: a report. Nematologia mediterranea. 31, pp. 195-196.

3,4-Dichloroaniline is detoxified and exported via different pathways in Arabidopsis and soybean

A - Papers appearing in refereed journals

Lao, S-H., Loutre, C., Brazier, M., Coleman, J. O. D., Cole, D. J., Edwards, R. and Theodoulou, F. L. 2003. 3,4-Dichloroaniline is detoxified and exported via different pathways in Arabidopsis and soybean. Phytochemistry. 63, pp. 653-661.

Control of ascorbate synthesis by respiration and its implications for stress responses

A - Papers appearing in refereed journals

Millar, A. H., Mittova, V., Kiddle, G., Heazlewood, J. L., Bartoli, C. G., Theodoulou, F. L. and Foyer, C. H. 2003. Control of ascorbate synthesis by respiration and its implications for stress responses. Plant Physiology. 133, pp. 443-447.

Isolation and characterisation of two multidrug resistance associated protein genes from maize

A - Papers appearing in refereed journals

Swarbreck, D., Ripoll, P-J., Brown, D. A., Edwards, K. J. and Theodoulou, F. L. 2003. Isolation and characterisation of two multidrug resistance associated protein genes from maize. Gene. 315, pp. 153-164.

Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting

A - Papers appearing in refereed journals

Atkins, S. D., Clark, I. M., Sosnowska, D., Hirsch, P. R. and Kerry, B. R. 2003. Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Applied and Environmental Microbiology. 69, pp. 4788-4793.

Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat

A - Papers appearing in refereed journals

Theodoulou, F. L., Clark, I. M., He, X-L., Pallett, K. E., Cole, D. J. and Hallahan, D. L. 2003. Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat. Pest Management Science. 59 (2), pp. 202-214. https://doi.org/10.1002/ps.576

Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes

A - Papers appearing in refereed journals

Atkins, S. D., Hidalgo-Diaz, L., Clark, I. M., Morton, C. O., Montes De Oca, N., Gray, P. A. and Kerry, B. R. 2003. Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes. Mycological Research. 107, pp. 206-212.

Initial testing of potential fungal biological control agents for potato cyst nematodes

C1 - Edited contributions to conferences/learned societies

Atkins, S. D., Clark, I. M., Sosnowska, D. and Kerry, B. R. 2002. Initial testing of potential fungal biological control agents for potato cyst nematodes. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 79-84

Impact of GM bacterial inoculants on the soil microbial community

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2002. Impact of GM bacterial inoculants on the soil microbial community. Abstracts International Conference on GMOs - Ecological Dimensions, Reading, 9-11 September 2002 .

Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes

C2 - Non-edited contributions to conferences

Gilliam, L. M., Clark, I. M. and Hirsch, P. R. 2002. Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 . pp. 86

The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow

A - Papers appearing in refereed journals

Clark, I. M., Mendum, T. A. and Hirsch, P. R. 2002. The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow. Antonie van Leeuwenhoek. 81, pp. 607-616.

Getting to grips with ABCs

C2 - Non-edited contributions to conferences

Theodoulou, F. L. 2002. Getting to grips with ABCs.

Identification of plant vacuole-specific proteins using the GARNet proteomics facility

C2 - Non-edited contributions to conferences

Theodoulou, F. L., He, X-L., Deery, M., Razzaq, A., Dupree, P. and Lilley, K. 2002. Identification of plant vacuole-specific proteins using the GARNet proteomics facility.

The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere

C2 - Non-edited contributions to conferences

Clark, I. M. and Hirsch, P. R. 2002. The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 .

The fate of genetically modified rhizobial inoculants in the field

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2002. The fate of genetically modified rhizobial inoculants in the field. Abstracts 8th New Phytologist Symposium, Helsinki, 10-14 June 2002 .

Role of 3,4-dichloroaniline N -malonyltransferase in the detoxification of herbicides

C1 - Edited contributions to conferences/learned societies

Lao, S-H., Theodoulou, F. L., Coleman, J. O. D., Cole, D. and Edwards, R. 2001. Role of 3,4-dichloroaniline N -malonyltransferase in the detoxification of herbicides. Proceedings Brighton Crop Protection Conference - Weeds 2001 . pp. 349-352

The MRP gene family in monocots - comparisons with Arabidopsis

C2 - Non-edited contributions to conferences

Swarbreck, D., O'sullivan, D., Edwards, D., Ripoll, P-J., Edwards, K. and Theodoulou, F. L. 2001. The MRP gene family in monocots - comparisons with Arabidopsis. Abstracts 12th International Workshop on Plant Membrane Biology, Madison, 11-16 August 2001 .

Metabolic and in situ approaches to understanding the role of ascorbate in the cell cycle in maize roots

C2 - Non-edited contributions to conferences

Kiddle, G., Theodoulou, F. L., Foyer, C. H. and Barlow, P. W. 2001. Metabolic and in situ approaches to understanding the role of ascorbate in the cell cycle in maize roots. Abstracts SEB Annual Meeting, Canterbury, 2-6 April 2001 . pp. C4.07

Role of 3,4-dichloroaniline N-malonyltransferase in the detoxification of xenobiotics

C2 - Non-edited contributions to conferences

Lao, S-H., Cole, D., Edwards, R., Theodoulou, F. L. and Coleman, J. O. D. 2001. Role of 3,4-dichloroaniline N-malonyltransferase in the detoxification of xenobiotics. Abstracts COST Action 837 Meeting, Grenoble, 27-29 September 2001 .

The functions of inter- and intracellular glutathione transport systems in plants

A - Papers appearing in refereed journals

Foyer, C. H., Theodoulou, F. L. and Delrot, S. 2001. The functions of inter- and intracellular glutathione transport systems in plants. Trends in Plant Science. 6, pp. 486-492.

MRP and oxidative stress: do yeast and plants do things differently?

C2 - Non-edited contributions to conferences

Brown, D. A., Cole, D. J. and Theodoulou, F. L. 2001. MRP and oxidative stress: do yeast and plants do things differently? Abstracts 12th International Workshop on Plant Membrane Biology, Madison, 11-16 August 2001 .

Characterization of two novel Rhizobium leguminosarum bacteriophages from a field release site of genetically-modified rhizobia

A - Papers appearing in refereed journals

Mendum, T. A., Clark, I. M. and Hirsch, P. R. 2001. Characterization of two novel Rhizobium leguminosarum bacteriophages from a field release site of genetically-modified rhizobia. Antonie van Leeuwenhoek. 79 (2), pp. 189-197. https://doi.org/10.1023/a:1010238412538

The development of Verticillium chlamydosporium as a biological control agent of root-knot nematodes in organic vegetable production in Havana

C2 - Non-edited contributions to conferences

Hidalgo, L., Bourne, J. M., Rodriguez, M. G., Sanchez, L., Hernandez, M. A., Atkins, S. D., Clark, I. M. and Kerry, B. R. 2001. The development of Verticillium chlamydosporium as a biological control agent of root-knot nematodes in organic vegetable production in Havana. Abstracts 4th International Scientific Seminar of Plant Health/33rd Annual Meeting of the Organization of Nematologists of Tropical America (ONTA), Varadera, Cuba, 11-15 June 2001 . pp. 12

A role for Multidrug Resistance associated Protein (MRP) in plant responses to oxidative stress?

C2 - Non-edited contributions to conferences

Brown, D. A., Cole, D. J. and Theodoulou, F. L. 2001. A role for Multidrug Resistance associated Protein (MRP) in plant responses to oxidative stress? Abstracts SEB Annual Meeting, Canterbury, 2-6 April 2001 . pp. P2.6

Monoterpenoid biosynthesis in glandular trichomes of labiate plants

B - Book chapters etc edited externally

Hallahan, D. L. 2000. Monoterpenoid biosynthesis in glandular trichomes of labiate plants. in: Advances in Botanical Research Elsevier.

A high affinity fungal nitrate carrier with two transport mechanisms

A - Papers appearing in refereed journals

Zhou, J-J., Trueman, L. J., Boorer, K. J., Theodoulou, F. L., Forde, B. G. and Miller, A. J. 2000. A high affinity fungal nitrate carrier with two transport mechanisms. Journal of Biological Chemistry. 275, pp. 39894-39899.

Plant ABC transporters

A - Papers appearing in refereed journals

Theodoulou, F. L. 2000. Plant ABC transporters. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1465 (1-2), pp. 79-103. https://doi.org/10.1016/S0005-2736(00)00132-2

Molecules on the move: how plants cope with foreign chemicals

G - Articles in popular magazines and other technical publications

Theodoulou, F. L. 2000. Molecules on the move: how plants cope with foreign chemicals. BBSRC Business. October 2000, pp. 12-13.

Inference of symbiotic plasmid involvement in the population dynamics of two GM rhizobia under different agricultural practices

C2 - Non-edited contributions to conferences

Clark, I. M., Mendum, T. A. and Hirsch, P. R. 2000. Inference of symbiotic plasmid involvement in the population dynamics of two GM rhizobia under different agricultural practices. Abstracts 2nd Symposium of the EU Concerted Action on Mobile Genetic Elements' Contribution to Bacterial Adaptability and Diversity (MECBAD), Prague, 17-19 September 2000 . pp. 27-28

Cloning and characterisation of xenobiotic inducible MRP homologues from wheat

C2 - Non-edited contributions to conferences

Brown, D. A., Cole, D. J. and Theodoulou, F. L. 1999. Cloning and characterisation of xenobiotic inducible MRP homologues from wheat. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Southampton, 8-10 September 1999 .

Role of ABC transporters in herbicide metabolism

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Clark, I. M., Mitchell, V. J., Moss, S. R. and Pallett, K. E. 1999. Role of ABC transporters in herbicide metabolism. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Southampton, 8-10 September 1999 .

Interactions between rhizobia and bacteriophages isolated from soil

C2 - Non-edited contributions to conferences

Mendum, T. A., Clark, I. M. and Hirsch, P. R. 1999. Interactions between rhizobia and bacteriophages isolated from soil. Abstracts BAGECO-6: 6th Symposium on Bacterial Genetics and Ecology, Florence, 20-24 June 1999 . pp. 17

The genetic implications of bacteriophages in Rhizobium leguminosarum

C2 - Non-edited contributions to conferences

Mendum, T. A., Clark, I. M. and Hirsch, P. R. 1999. The genetic implications of bacteriophages in Rhizobium leguminosarum. Abstracts 1st Symposium of the EU-concerted Action on Mobile Elements Contribution to Bacterial Adaptability (MECBAD), Le Mont Ste Odile, 23-27 April 1999 . pp. 23

Triticum aestivum mRNA for putative In2.1-like protein

K - Protein or DNA sequences submitted to database

Theodoulou, F. L. 1998. Triticum aestivum mRNA for putative In2.1-like protein.

A herbicide safener-induced MRP homologue from wheat

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Clark, I. M., Pallett, K. E. and Hallahan, D. L. 1998. A herbicide safener-induced MRP homologue from wheat. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 77

HvMDR 2 - a novel P-glycoprotein homologue from barley

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Davies, T. G. E., Hallahan, D. L. and Forde, B. G. 1998. HvMDR 2 - a novel P-glycoprotein homologue from barley. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 78

Cloning and functional characterization of a Brassica napus transporter that is able to transport nitrate and histidine

A - Papers appearing in refereed journals

Zhou, J-J., Theodoulou, F. L., Muldin, I., Ingemarsson, B. and Miller, A. J. 1998. Cloning and functional characterization of a Brassica napus transporter that is able to transport nitrate and histidine. Journal of Biological Chemistry. 273 (20), pp. 12017-12023. https://doi.org/10.1074/jbc.273.20.12017

Nepetalactol oxidoreductase in trichomes of the catmint Nepeta racemosa

A - Papers appearing in refereed journals

Hallahan, D. L., West, J. M., Smiley, D. W. M. and Pickett, J. A. 1998. Nepetalactol oxidoreductase in trichomes of the catmint Nepeta racemosa. Phytochemistry. 48, pp. 421-427.

Molecular enzymology of plant cytochromes P450

C1 - Edited contributions to conferences/learned societies

Maughan, J. A., Nugent, J. H. A., Clark, I. M., Westlake, A. C. G. and Hallahan, D. L. 1997. Molecular enzymology of plant cytochromes P450. Proceedings Brighton Crop Protection Conference - Weeds, 1997 . pp. 597-604

Characterization of low and high affinity nitrate cotransporters expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Theodoulou, F. L. and Miller, A. J. 1997. Characterization of low and high affinity nitrate cotransporters expressed in Xenopus oocytes. Abstracts Phytosfere '97, Dublin, 23-25 April 1997 .

Functional expression of the crnA high affinity nitrate transporter of Aspergillus nidulans in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Trueman, L. J., Theodoulou, F. L., Forde, B. G. and Miller, A. J. 1997. Functional expression of the crnA high affinity nitrate transporter of Aspergillus nidulans in Xenopus oocytes. Abstracts SEB Plant Transport Group Workshop, Glasgow, 8-10 September 1997 . pp. N6

A kinetic model with ordered cytoplasmic dissociation for SUC1, an Arabidopsis H+/sucrose cotransporter expressed in Xenopus oocytes

A - Papers appearing in refereed journals

Zhou, J-J., Theodoulou, F. L., Sauer, N., Sanders, D. and Miller, A. J. 1997. A kinetic model with ordered cytoplasmic dissociation for SUC1, an Arabidopsis H+/sucrose cotransporter expressed in Xenopus oocytes. Journal Of Membrane Biology. 159, pp. 113-125.

Cloning and characterisation of a novel P-glycoprotein homologue from barley

A - Papers appearing in refereed journals

Davies, T. G. E., Theodoulou, F. L., Hallahan, D. L. and Forde, B. G. 1997. Cloning and characterisation of a novel P-glycoprotein homologue from barley. Gene. 199, pp. 195-202.

Expression of CYP71B7, a cytochrome P450 expressed sequence tag from Arabidopsis thaliana

A - Papers appearing in refereed journals

Maughan, J. A., Nugent, J. H. A. and Hallahan, D. L. 1997. Expression of CYP71B7, a cytochrome P450 expressed sequence tag from Arabidopsis thaliana. Archives of Biochemistry and Biophysics. 341 (1), pp. 104-111. https://doi.org/10.1006/abbi.1997.9943

Analysis of monoterpenoids in glandular trichomes of the catmint Nepeta racemosa

A - Papers appearing in refereed journals

Clark, L. J., Hamilton, J. G. C., Chapman, J. V., Rhodes, M. J. C. and Hallahan, D. L. 1997. Analysis of monoterpenoids in glandular trichomes of the catmint Nepeta racemosa. The Plant Journal. 11 (6), pp. 1387-1393. https://doi.org/10.1046/j.1365-313X.1997.11061387.x

Spatially distinct expression of two new cytochrome P450s in leaves of Nepeta racemosa : identification of a trichome-specific isoform

A - Papers appearing in refereed journals

Clark, I. M., Forde, B. G. and Hallahan, D. L. 1997. Spatially distinct expression of two new cytochrome P450s in leaves of Nepeta racemosa : identification of a trichome-specific isoform. Plant Molecular Biology. 33, pp. 875-885.

A. thaliana mRNA for cytochrome P450

K - Protein or DNA sequences submitted to database

Hallahan, D. L. 1996. A. thaliana mRNA for cytochrome P450.

N. racemosa mRNA for cytochrome P450, CYP71A6, partial

K - Protein or DNA sequences submitted to database

Clark, I. M. and Hallahan, D. L. 1996. N. racemosa mRNA for cytochrome P450, CYP71A6, partial.

Nepeta racemosa mRNA for cytochrome P450, CYP71A5

K - Protein or DNA sequences submitted to database

Clark, I. M. and Hallahan, D. L. 1996. Nepeta racemosa mRNA for cytochrome P450, CYP71A5.

Cytochrome P450 and herbicide selectivity

C2 - Non-edited contributions to conferences

Hallahan, D. L. 1996. Cytochrome P450 and herbicide selectivity. Abstracts SCI Conference on New Perspectives in Mechanisms of Herbicide Action, London, 13 March 1996 .

Development and essential oil accumulation in glandular trichomes of catmint (Nepeta racemosa )

C2 - Non-edited contributions to conferences

Clark, L. J., Hallahan, D. L., Bourett, T. M., Howard, R. J. and Hamilton, J. G. C. 1996. Development and essential oil accumulation in glandular trichomes of catmint (Nepeta racemosa ). Abstracts SEB Meeting on Control of Plant Development: Genes and Signals, Dublin, 21-25 July 1996 . pp. P21

Characterization of low and high affinity nitrogen cotransporters expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Theodoulou, F. L., Muldin, I., Ingemarsson, B. and Miller, A. J. 1996. Characterization of low and high affinity nitrogen cotransporters expressed in Xenopus oocytes. Abstracts SEB Plant Transport Group Workshop, Saltash, 23-25 September 1996 .

Characterisation of high-affinity nitrate transporter homologues from higher plants

C2 - Non-edited contributions to conferences

Trueman, L. J., Dunn, S. M., Jennings, A. J., Onyeocha, I., Theodoulou, F. L., Zhang, H., Zhou, J-J., Miller, A. J. and Forde, B. G. 1996. Characterisation of high-affinity nitrate transporter homologues from higher plants. Abstracts SEB Plant Transport Group Workshop, Saltash, 23-25 September 1996 .

Cloning and sequencing of a cytochrome P450, CYP89, from Arabidopsis thaliana (Accession No. U61231)(PGR 96-061)

A - Papers appearing in refereed journals

Courtney, K. J., Percival, F. W., Hallahan, D. L. and Christoffersen, R. E. 1996. Cloning and sequencing of a cytochrome P450, CYP89, from Arabidopsis thaliana (Accession No. U61231)(PGR 96-061). Plant Physiology (Plant Gene Register). 112, p. 445.

Chlorotoluron metabolism in resistant and susceptible biotypes of the grass weed Alopecurus mysuroides

A - Papers appearing in refereed journals

Hyde, R. J., Hallahan, D. L. and Bowyer, J. R. 1996. Chlorotoluron metabolism in resistant and susceptible biotypes of the grass weed Alopecurus mysuroides. Pesticide Science. 47 (2), pp. 185-190.

Cytochrome P-450 in plant/insect interactions: geraniol 10-hydroxylase and the biosynthesis of iridoid monoterpenoids

A - Papers appearing in refereed journals

Hallahan, D. L. and West, J. M. 1995. Cytochrome P-450 in plant/insect interactions: geraniol 10-hydroxylase and the biosynthesis of iridoid monoterpenoids. Drug Metabolism and Drug Interactions. 12, pp. 369-382.

Heterologous expression studies in yeast and tobacco of Thlaspi arvense CYP71

C2 - Non-edited contributions to conferences

Kelly, D. E., Hanley, S. Z., Mehmood, Z., Hallahan, D. L., Udvardi, M. and Kelly, S. L. 1995. Heterologous expression studies in yeast and tobacco of Thlaspi arvense CYP71. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .

Molecular analysis of cytochrome P450 cDNAs from Nepeta racemosa

C2 - Non-edited contributions to conferences

Clark, I. M., Crank, S. F., Forde, B. G. and Hallahan, D. L. 1995. Molecular analysis of cytochrome P450 cDNAs from Nepeta racemosa. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .

Molecular investigation into the presence and role of cytochrome P450 in Zea mays

C2 - Non-edited contributions to conferences

Maughan, J. A., Hallahan, D. L., Nugent, J. H. A. and Thomas, P. 1995. Molecular investigation into the presence and role of cytochrome P450 in Zea mays. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .

A new cytochrome P450 identified from Arabidopsis thaliana by PCR using degenerate oligonuleotide primers

C2 - Non-edited contributions to conferences

Courtney, K. J., Percival, F., Felix, L., Hallahan, D. L. and Christoffersen, R. E. 1995. A new cytochrome P450 identified from Arabidopsis thaliana by PCR using degenerate oligonuleotide primers. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October, 1995 .

Kinetic characterisation and mutational analysis of STP1, an Arabidopsis H=/hexose cotransporter expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Zhou, J-J., Miller, A. J. and Sanders, D. 1995. Kinetic characterisation and mutational analysis of STP1, an Arabidopsis H=/hexose cotransporter expressed in Xenopus oocytes. Abstracts International Conference on the Transport of Photoassimiltes, Canterbury, 13-17 August 1995 . pp. 35

Characterization of low affinity nitrogen transporters expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Theodoulou, F. L., Muldin, I., Ingemarsson, B. and Miller, A. J. 1995. Characterization of low affinity nitrogen transporters expressed in Xenopus oocytes. Abstracts 4th International Symposium on Inorganic Nitrogen Assimilation, Darmstadt, 23-28 July 1995 . pp. 144

Xenopus oocytes as a heterologous expression system

B - Book chapters etc edited externally

Theodoulou, F. L. and Miller, A. J. 1995. Xenopus oocytes as a heterologous expression system. in: Jones, H. (ed.) Methods in molecular biology vol. 49: plant gene transfer and expression protocols Humana Press, Totowa. pp. 317-340

Characterization of low affinity nitrogen cotransporters expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Theodoulou, F. L., Muldin, I., Ingemarsson, B. and Miller, A. J. 1995. Characterization of low affinity nitrogen cotransporters expressed in Xenopus oocytes. Abstracts 10th International Workshop on Plant Membrane Biology, Regensberg, August 1995 . pp. R38

Kinetic characterization and mutational analysis of STP1, an Arabidopsis H+/hexose cotransporter expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Zhou, J-J., Sanders, D. and Miller, A. J. 1995. Kinetic characterization and mutational analysis of STP1, an Arabidopsis H+/hexose cotransporter expressed in Xenopus oocytes. Abstracts 10th International Workshop on Plant Membrane Biology, Regensberg, August 1995 . pp. R01

Xenopus oocytes as a heterologous expression system for plant proteins

A - Papers appearing in refereed journals

Theodoulou, F. L. and Miller, A. J. 1995. Xenopus oocytes as a heterologous expression system for plant proteins. Molecular Biotechnology. 3, pp. 101-115.

Purification and characterisation of an acyclic monoterpene primary alcohol: NADP+ oxidoreductase from catmint (Nepeta racemosa)

A - Papers appearing in refereed journals

Hallahan, D. L., West, J. M., Wallsgrove, R. M., Smiley, D. W. M., Dawson, G. W., Pickett, J. A. and Hamilton, J. G. C. 1995. Purification and characterisation of an acyclic monoterpene primary alcohol: NADP+ oxidoreductase from catmint (Nepeta racemosa). Archives of Biochemistry and Biophysics. 318 (1), pp. 105-112. https://doi.org/10.1006/abbi.1995.1210

The heterologous expression of H+-coupled transporters in Xenopus oocytes

B - Book chapters etc edited externally

Miller, A. J., Smith, S. J. and Theodoulou, F. L. 1994. The heterologous expression of H+-coupled transporters in Xenopus oocytes. in: Leigh, R. A., Sanders, D. and Blatt, M. R. (ed.) Membrane transport in plants and fungi: molecular mechanisms and control Company of Biologists, Cambridge. pp. 167-177

The calcium pumps of plant cell membranes

C1 - Edited contributions to conferences/learned societies

Evans, D. E., Theodoulou, F. L., Williamson, I. M. and Boyce, J. M. 1994. The calcium pumps of plant cell membranes. Leigh, R. A., Sanders, D. and Blatt, M. (ed.) Membrane transport in plants and fungi: molecular mechanisms and control . Company of Biologists, Cambridge. pp. 43-59

Calmodulin-stimulated ATPase of maize cells: functional reconstitution, monoclonal antibodies and subcellular localisation

A - Papers appearing in refereed journals

Theodoulou, F. L., Dewey, F. M. and Evans, D. E. 1994. Calmodulin-stimulated ATPase of maize cells: functional reconstitution, monoclonal antibodies and subcellular localisation. Journal of Experimental Botany. 45, pp. 1553-1564.

Gland development on leaf surfaces of Nepeta racemosa

A - Papers appearing in refereed journals

Bourett, T. M., Howard, R. J., O'Keefe, D. P. and Hallahan, D. L. 1994. Gland development on leaf surfaces of Nepeta racemosa. International Journal Of Plant Sciences. 155 (6), pp. 623-632. https://doi.org/10.1086/297202

Molecular investigation of the role of cytochrome P450 in herbicide cross-resistant grass species

C2 - Non-edited contributions to conferences

Hyde, R., Hallahan, D. L. and Bowyer, J. R. 1994. Molecular investigation of the role of cytochrome P450 in herbicide cross-resistant grass species. Abstracts 2nd International Symposium on Cytochrome P450 of Microorganisms and Plants, Tokyo, 13-17 June, 1993 .

Expression of nitrate transporters in Xenopus oocytes

C2 - Non-edited contributions to conferences

Zhou, J-J., Theodoulou, F. L. and Miller, A. J. 1994. Expression of nitrate transporters in Xenopus oocytes. Abstracts Society for Experimental Biology Plant Transport Group Workshop, Newcastle, September 1994 .

Kinetics of STP1- an Arabidopsis hexose/proton cotransporter expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Zhou, J-J., Smith, S. J., Sanders, D. and Miller, A. J. 1994. Kinetics of STP1- an Arabidopsis hexose/proton cotransporter expressed in Xenopus oocytes. Abstracts Society for Experimental Biology Plant Transport Group Workshop, Newcastle, September 1994 .

Cytochrome P450-catalysed monoterpenoid oxidation in catmint (Nepeta racemosa ) and avocado (Persea americana ): evidence for related enzymes with different activities

A - Papers appearing in refereed journals

Hallahan, D. L., Lau, S-M. C., Harder, P. A., Smiley, D. W. M., Dawson, G. W., Pickett, J. A., Christoffersen, R. E. and O'Keefe, D. P. 1994. Cytochrome P450-catalysed monoterpenoid oxidation in catmint (Nepeta racemosa ) and avocado (Persea americana ): evidence for related enzymes with different activities. Biochimica et Biophysica Acts (BBA) - General Subjects. 1201 (1), pp. 94-100. https://doi.org/10.1016/0304-4165(94)90156-2

Structure and function of STPI, the Arabidopsis H+/glucose transporter expressed in Xenopus oocytes

C2 - Non-edited contributions to conferences

Miller, A. J., Parry, M. A. J., Sanders, D. and Theodoulou, F. L. 1994. Structure and function of STPI, the Arabidopsis H+/glucose transporter expressed in Xenopus oocytes. Abstracts BBSRC Plant Molecular Biology II Mid-term Meeting, University of East Anglia, 6-8 July 1994 . pp. 30

Molecular studies of plant secondary metabolism; localization and regulation of terpenoid biosynthesis

C2 - Non-edited contributions to conferences

Crank, S. F., Forde, B. G. and Hallahan, D. L. 1994. Molecular studies of plant secondary metabolism; localization and regulation of terpenoid biosynthesis. Abstracts BBSRC Plant Molecular Biology II Mid-term Meeting, University of East Anglia, 6-8 July 1994 . pp. 20

Cloning and analysis of a putative high affinity nitrate transporter from barley

C2 - Non-edited contributions to conferences

Trueman, L. J., Theodoulou, F. L., Miller, A. J. and Forde, B. G. 1994. Cloning and analysis of a putative high affinity nitrate transporter from barley. Abstracts 4th International Congress of Plant Molecular Biology, Amsterdam, 20-24 June 1994 .

Plant cytochrome P-450 and agricultural biotechnology

A - Papers appearing in refereed journals

Hallahan, D. L., Cheriton, A. K., Hyde, R., Clark, I. M. and Forde, B. G. 1993. Plant cytochrome P-450 and agricultural biotechnology. Biochemical Society Transactions. 21 (4), pp. 1068-1073. https://doi.org/10.1042/bst0211068

Herbicide resistance and cytochrome P-450

C1 - Edited contributions to conferences/learned societies

Hyde, R. J., Cheriton, A. K., Hallahan, D. L. and Bowyer, J. R. 1993. Herbicide resistance and cytochrome P-450. Proceedings Brighton Crop Protection Conference - Weeds, 1993 . pp. 549-554

Using plant secondary metabolites to engineer enhanced crop protection - progress with two contrasting approaches

C1 - Edited contributions to conferences/learned societies

Bennett, R., Hallahan, D. L. and Wallsgrove, R. M. 1993. Using plant secondary metabolites to engineer enhanced crop protection - progress with two contrasting approaches. Opportunities for Molecular Biology in Crop Protection. BCPC Monograph .

The heterologous expression of H+ cotransport proteins in Xenopus oocytes

C2 - Non-edited contributions to conferences

Miller, A. J., Smith, S. and Theodoulou, F. L. 1993. The heterologous expression of H+ cotransport proteins in Xenopus oocytes. Proceedings SEB Symposium Membrane Transport in Plants and Fungi, Wye College, September 1993 . pp. 8

Characterisation of the delta11-palmitoyl-CoA-desaturase from Spodoptera littoralis (Lepidoptera: Noctuidae)

A - Papers appearing in refereed journals

Rodriguez, F., Hallahan, D. L., Pickett, J. A. and Camps, F. 1992. Characterisation of the delta11-palmitoyl-CoA-desaturase from Spodoptera littoralis (Lepidoptera: Noctuidae). Insect Biochemistry and Molecular Biology. 22 (2), pp. 143-148. https://doi.org/10.1016/0965-1748(92)90152-5

Potential of secondary metabolites in genetic engineering of crops for resistance

B - Book chapters etc edited externally

Hallahan, D. L., Pickett, J. A., Wadhams, L. J., Wallsgrove, R. M. and Woodcock, C. M. 1992. Potential of secondary metabolites in genetic engineering of crops for resistance. in: Gatehouse, A. M. R., Boulter, D. and Hilder, V. A. (ed.) Plant Genetic Manipulation for Crop Protection CABI International, Wallingford, Oxon (CABI). pp. 215-248

Interactions of avocado (Persea americana) cytochrome P-450 with monoterpenoids

A - Papers appearing in refereed journals

Hallahan, D. L., Nugent, J. H. A., Hallahan, B. J., Dawson, G. W., Smiley, D. W. M., West, J. M. and Wallsgrove, R. M. 1992. Interactions of avocado (Persea americana) cytochrome P-450 with monoterpenoids. Plant Physiology. 98, pp. 1290-1297.

Cytochrome P-450 catalysed monoterpene hydroxylation in Nepeta mussinii

A - Papers appearing in refereed journals

Hallahan, D. L., Dawson, G. W., West, J. M. and Wallsgrove, R. M. 1992. Cytochrome P-450 catalysed monoterpene hydroxylation in Nepeta mussinii. Plant Physiology and Biochemistry. 30, pp. 435-443.

Synthesis and biological activity of an azido derivative of Paclobutrazol, an inhibitor of gibberelin biosynthesis.

A - Papers appearing in refereed journals

Hallahan, D. L., Heasman, A. P., Grossel, M. C., Quigley, R., Hedden, P. and Bowyer, J. R. 1989. Synthesis and biological activity of an azido derivative of Paclobutrazol, an inhibitor of gibberelin biosynthesis. Plant Physiology. 88, pp. 1425-1429.

Secondary plant metabolites as targets for genetic modification of crop plants for pest resistance.

A - Papers appearing in refereed journals

Dawson, G. W., Hallahan, D. L., Mudd, A., Patel, M. M., Pickett, J. A., Wadhams, L. A. and Wallsgrove, R. M. 1989. Secondary plant metabolites as targets for genetic modification of crop plants for pest resistance. Pesticide Science. 27 (2), pp. 191-201. https://doi.org/10.1002/ps.2780270209