Nepeta racemosa mRNA for cytochrome P450, CYP71A5
K - Protein or DNA sequences submitted to database
Clark, I. M. and Hallahan, D. L. 1996. Nepeta racemosa mRNA for cytochrome P450, CYP71A5.
| Authors | Clark, I. M. and Hallahan, D. L. |
|---|---|
| Year of Publication | 1996 |
| Funder project or code | 413 |
| Collective title | EMBL Accession No. Y09423 |
Related outputs
Identification and genomic analysis of a thermophilic bacterial strain that reduces ammonia loss from composting
A - Papers appearing in refereed journals
Chen, X., Feng, R., Du, Q., Mauchline, T. H., Clark, I. M., Lu, Y. and Liu, L. 2024. Identification and genomic analysis of a thermophilic bacterial strain that reduces ammonia loss from composting. Microbiology Spectrum. 0, pp. e00763-24. https://doi.org/10.1128/spectrum.00763-24
Geographic bioprospection of maize rhizoplane-associated bacteria for consortia construction and impact on plant growth and nutrient uptake under low P availability
A - Papers appearing in refereed journals
Nkir, D., Aallam, Y., Ibnyasser, A., Haddine, M., Benbrik, B., Barakat, A., Reid, T. E., Lund, G., Mauchline, T. H., Clark, I. M., Bargaz, A. and Rchiad, Z. 2024. Geographic bioprospection of maize rhizoplane-associated bacteria for consortia construction and impact on plant growth and nutrient uptake under low P availability. Environmental and Experimental Botany. 226 (October), p. 105939. https://doi.org/10.1016/j.envexpbot.2024.105939
Diversity and multifunctional potential for plant growth promotion in bacteria from soil and the rhizosphere
A - Papers appearing in refereed journals
Oliveira, L. M. D., Kavamura, V. N., Clark, I. M., Mauchline, T. H. and Souza, J. T. D. 2024. Diversity and multifunctional potential for plant growth promotion in bacteria from soil and the rhizosphere. Soil Use and Management. 40 (2), p. e13082. https://doi.org/10.1111/sum.13082
Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat
N - Datasets
Reid, T., Kavamura, V. N., Torres-Ballesteros, A., Smith, M., Abadie, M., Pawlett, M., Clark, I. M., Harris, J. A. and Mauchline, T. H. 2024. Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat. https://doi.org/10.23637/rothamsted.98zz7
The potato rhizosphere microbiota correlated to the yield of three different regions in Korea
A - Papers appearing in refereed journals
Bak, G., Lee, K. K., Clark, I. M., Mauchline, T. H., Kavamura, V. N., Lund, G., Jee, S., Lee, J., Kim, H. and Lee, Y. 2024. The potato rhizosphere microbiota correlated to the yield of three different regions in Korea. Scientific Reports. 14, p. 4536. https://doi.org/10.1038/s41598-024-55263-7
Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat
A - Papers appearing in refereed journals
Reid, T., Kavamura, V. N., Torres-Ballesteros, A., Smith, M. E., Abadie, M., Pawlett, M., Clark, I. M., Harris, J. A. and Mauchline, T. H. 2024. Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat. The ISME Journal. 18 (1), p. wrae131. https://doi.org/10.1093/ismejo/wrae131
Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency
A - Papers appearing in refereed journals
Ndour, P. M. S., Bargaz, A., Rchiad, Z., Pawlett, M., Clark, I. M., Mauchline, T. H., Harris, J. and Lyamlouli, K. 2023. Microbial Catabolic Activity: Methods, Pertinence, and Potential Interest for Improving Microbial Inoculant Efficiency. Microbial Ecology. 86, pp. 2211-2230. https://doi.org/10.1007/s00248-023-02250-6
The UK Crop Microbiome Cryobank – Advancing Microbiome Research for Sustainable Agriculture
Conference keynote
Taketani, R. G., Ryan, M. J., Mauchline, T. H., Malone, J., Jones, S., Thompson, C., Bonnin, J. M., Stewart, H., Yau, P., Clark, I. M. and Holden, N. 2023. The UK Crop Microbiome Cryobank – Advancing Microbiome Research for Sustainable Agriculture.
A new Rothamsted long-term field experiment for the twenty-first century: principles and practice
A - Papers appearing in refereed journals
Li, X., Storkey, J., Mead, A., Shield, I. F., Clark, I. M., Ostler, R., Roberts, B. and Dobermann, A. 2023. A new Rothamsted long-term field experiment for the twenty-first century: principles and practice. Agronomy for Sustainable Development - ASD. 43 (5), p. 60. https://doi.org/10.1007/s13593-023-00914-8
Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype
A - Papers appearing in refereed journals
Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. 4, pp. 51-60. https://doi.org/10.1038/s43016-022-00671-z
The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil
A - Papers appearing in refereed journals
Barrat, H., Clark, I. M., Evans, J., Chadwick, D. R. and Cardenas, L. M. 2022. The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil. Soil Biology and Biochemistry. 168 (May), p. 108606. https://doi.org/10.1016/j.soilbio.2022.108606
Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat
A - Papers appearing in refereed journals
Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475
N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes
A - Papers appearing in refereed journals
Barrat, H., Charteris, A., Le Cocq, K., Abadie, M., Clark, I. M., Chadwick, D. R. and Cardenas, L. M. 2022. N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes. European Journal of Soil Science. 73 (1), p. e13190. https://doi.org/10.1111/ejss.13190
Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads
A - Papers appearing in refereed journals
Ruscoe, H., Taketani, R., Clark, I. M., Lund, G., Hughes, D. J., Dodd, I., Hirsch, P. R. and Mauchline, T. H. 2021. Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads. Frontiers in Microbiology. 12, p. 611339. https://doi.org/10.3389/fmicb.2021.611339
Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils
A - Papers appearing in refereed journals
Clark, I. M., Hughes, D. J., Fu, Q., Abadie, M. and Hirsch, P. R. 2021. Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils . Scientific Reports. 11, p. 15905. https://doi.org/10.1038/s41598-021-95100-9
Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses
A - Papers appearing in refereed journals
Castellano-Hinojosa, A., Le Cocq, K., Charteris, A., Abadie, M., Chadwick, D. R., Clark, I. M., Bedmar, E. J. and Cardenas, L. M. 2021. Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses. International Biodeterioration & Biodegradation. 159, p. 105199. https://doi.org/10.1016/j.ibiod.2021.105199
Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria
A - Papers appearing in refereed journals
Reid, T. E., Kavamura, V. N., Abadie, M., Torres-Ballesteros, A., Pawlett, M., Clark, I. M., Harris, J. and Mauchline, T. H. 2021. Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria. Frontiers in Microbiology. 12 (article), p. 642587. https://doi.org/10.3389/fmicb.2021.642587
Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity
A - Papers appearing in refereed journals
Neal, A. L., Hughes, D. J., Clark, I. M., Jansson, J. K. and Hirsch, P. R. 2021. Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity. mSystems. 6 (3), pp. e01056-20. https://doi.org/10.1128/mSystems.01056-20
Century long fertilization reduces stochasticity controlling grassland microbial community succession
A - Papers appearing in refereed journals
Liang, Y., Ning, D., Lu, Z., Zhang, N., Hale, L., Wu, L., Clark, I. M., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun ,B. and Zhou, J. 2020. Century long fertilization reduces stochasticity controlling grassland microbial community succession. Soil Biology and Biochemistry. 151 (Dec), p. 108023. https://doi.org/10.1016/j.soilbio.2020.108023
The impact of drought and rewetting on N2O emissions from soil in temperate and Mediterranean climates
A - Papers appearing in refereed journals
Barrat, H., Evans, J., Chadwick, D. R., Clark, I. M., Le Cocq, K. and Cardenas, L. M. 2020. The impact of drought and rewetting on N2O emissions from soil in temperate and Mediterranean climates. European Journal of Soil Science. https://doi.org/10.1111/ejss.13015
Edaphic factors and plants influence denitrification in soils from a long-term arable experiment
A - Papers appearing in refereed journals
Clark, I. M., Fu, Q., Abadie, M., Dixon, E. R., Blaud, A. and Hirsch, P. R. 2020. Edaphic factors and plants influence denitrification in soils from a long-term arable experiment. Scientific Reports. 10 (Article), p. 16053. https://doi.org/10.1038/s41598-020-72679-z
Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion
A - Papers appearing in refereed journals
Bacq-Labreuil, A., Neal, A. L., Crawford, J. W., Mooney, S. J., Akkari, E., Zhang, X., Clark, I. M. and Ritz, K. 2020. Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion. European Journal of Soil Science. https://doi.org/10.1111/ejss.13037
Wheat dwarfing influences selection of the rhizosphere microbiome
A - Papers appearing in refereed journals
Kavamura, V. N., Robinson, R. J., Hughes, D., Clark, I. M., Rossmann, M., De Melo, I.S., Hirsch, P. R., Mendes, R. and Mauchline, T. H. 2020. Wheat dwarfing influences selection of the rhizosphere microbiome. Scientific Reports. 10, p. 1452. https://doi.org/10.1038/s41598-020-58402-y
Development of a defined compost system for the study of plant-microbe interactions
A - Papers appearing in refereed journals
Masters-Clark, E., Hirsch, P. R., Clark, I. M., Paradelo, M. and Mauchline, T. H. 2020. Development of a defined compost system for the study of plant-microbe interactions. Scientific Reports. 10, p. 7521. https://doi.org/10.1038/s41598-020-64249-0
Soil as an Extended Composite Phenotype of the Microbial Metagenome
A - Papers appearing in refereed journals
Neal, A. L., Bacq-Labreuil, A., Zhang, X., Clark, I. M., Coleman, K., Mooney, S. J., Ritz, K. and Crawford, J. W. 2020. Soil as an Extended Composite Phenotype of the Microbial Metagenome. Scientific Reports. 10, p. 10649. https://doi.org/10.1038/s41598-020-67631-0
The pH optimum of soil exoenzymes adapt to long term changes in soil pH
A - Papers appearing in refereed journals
Puissant, J., Briony, J., Goodall, T., Mang, D., Blaud, A., Gweon, H. S., Malik, A., Jones, D. L., Clark, I. M., Hirsch, P. R. and Griffiths, R. 2019. The pH optimum of soil exoenzymes adapt to long term changes in soil pH. Soil Biology and Biochemistry. 138, p. 107601. https://doi.org/10.1016/j.soilbio.2019.107601
Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil
A - Papers appearing in refereed journals
Fu, Q., Abadie, M., Blaud, A., Carswell, A. M., Misselbrook, T. H., Clark, I. M. and Hirsch, P. R. 2019. Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil . Biology And Fertility Of Soils. pp. 1-10. https://doi.org/10.1007/s00374-019-01411-5
Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat
A - Papers appearing in refereed journals
Kavamura, V. N., Robinson, R. J., Hayat, R., Clark, I. M., Hughes, D. J., Rossmann, M., Hirsch, P. R., Mendes, R. and Mauchline, T. H. 2019. Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat. Frontiers in Microbiology. 10 (2625). https://doi.org/10.3389/fmicb.2019.02625
Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers
A - Papers appearing in refereed journals
Huang, R., McGrath, S. P., Hirsch, P. R., Clark, I. M., Storkey, J., Wu, L., Zhou, J. and Liang, Y. 2019. Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers. Microbial Biotechnology. 12 (6), pp. 1464-1475. https://doi.org/10.1111/1751-7915.13487
Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive
E - Books edited/written by staff member, alone/with others
Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.
The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management
A - Papers appearing in refereed journals
Fu, Q., Clark, I. M., Zhu, J., Hu, H. Q. and Hirsch, P. R. 2018. The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management. Biology And Fertility Of Soils. 54 (1), pp. 163-172. https://doi.org/10.1007/s00374-017-1249-2
Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Clark, I. M. and Hirsch, P. R. 2018. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil. Letters in Applied Microbiology. 66 (1), pp. 14-18. https://doi.org/10.1111/lam.12821
Land use driven change in soil pH affects microbial carbon cycling processes
A - Papers appearing in refereed journals
Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M, Masson, K.E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G. and Griffiths, R.I. 2018. Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications. 9 (3591). https://doi.org/10.1038/s41467-018-05980-1
Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities
A - Papers appearing in refereed journals
Nessner-Kavamura-Noguchi, V., Hayat, R., Clark, I. M., Rossmann, M., Mendes, R., Hirsch, P. R. and Mauchline, T. H. 2018. Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. Frontiers in Microbiology. 9, p. 1074. https://doi.org/10.3389/fmicb.2018.01074
Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system
A - Papers appearing in refereed journals
De Sosa, L. L., Glanville, C. C., Marshall, M. R., Williams, A. P., Abadie, M., Clark, I. M., Blaud, A. and Jones, D. L. 2018. Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system. Soil Biology and Biochemistry. 120, pp. 153-164. https://doi.org/10.1016/j.soilbio.2018.02.004
Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance
A - Papers appearing in refereed journals
Neal, A. L., Blackwell, M. S. A., Akkari, E., Clark, I. M., Hirsch, P. R. and Guyomar, C. 2018. Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. Plant and Soil. 427, pp. 175-189. https://doi.org/10.1007/s11104-017-3301-2
Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures
A - Papers appearing in refereed journals
Gao, W., Muñoz-Romero, V., Ren, T., Ashton, R. W., Morin, M., Clark, I. M., Powlson, D. S. and Whalley, W. R. 2017. Effect of microbial activity on penetrometer resistance and elastic modulus of soil at different temperatures. European Journal of Soil Science. 68 (4), pp. 412-419. https://doi.org/10.1111/ejss.12440
Soil resilience and recovery: rapid community responses to management changes
A - Papers appearing in refereed journals
Hirsch, P. R., Jhurreea, D., Williams, J. K., Murray, P. J., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2017. Soil resilience and recovery: rapid community responses to management changes. Plant and Soil. 412 (1-2), pp. 283-297. https://doi.org/10.1007/s11104-016-3068-x
Land-use influences phosphatase gene microdiversity in soils
A - Papers appearing in refereed journals
Neal, A. L., Rossmann, M., Brearley, C., Akkari, E., Guyomar, C., Clark, I. M., Allen, E. and Hirsch, P. R. 2017. Land-use influences phosphatase gene microdiversity in soils. Environmental Microbiology. 19 (7), p. 2740–2753. https://doi.org/10.1111/1462-2920.13778
Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome
A - Papers appearing in refereed journals
Xie, W-Y., McGrath, S. P., Su, J. Q., Hirsch, P. R., Clark, I. M., Shen, Q., Zhu, Y-G. and Zhao, F-J. 2016. Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome. Environmental Science & Technology. 50 (23), pp. 12602-12611. https://doi.org/10.1021/acs.est.6b02138
Responses of microbial community from tropical pristine coastal soil to crude oil contamination
A - Papers appearing in refereed journals
Morais, D., Pylro, V., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2016. Responses of microbial community from tropical pristine coastal soil to crude oil contamination. PeerJ. 4. https://doi.org/10.7717/peerj.1733
Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability
A - Papers appearing in refereed journals
Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability. Plant and Soil. 405 (1-2), pp. 381-396. https://doi.org/10.1007/s11104-015-2495-4
Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen
A - Papers appearing in refereed journals
Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905
The unique contribution of Rothamsted to ecological research at large temporal scales
B - Book chapters etc edited externally
Storkey, J., Macdonald, A. J., Bell, J. R., Clark, I. M., Gregory, A. S., Hawkins, N. J., Hirsch, P. R., Todman, L. C. and Whitmore, A. P. 2016. The unique contribution of Rothamsted to ecological research at large temporal scales. in: Dumbrell, A. J., Kordas, R. L. and Woodward, G. (ed.) Advances in Ecological Research 55: Large-Scale Ecology: Model Systems to Global Perspectives Academic Press, Oxford. pp. 3-42
Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes
A - Papers appearing in refereed journals
Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes. Scientific Reports. 6, p. 25581. https://doi.org/10.1038/srep25581
Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison
A - Papers appearing in refereed journals
Jones, F. P., Clark, I. M., King, R., Shaw, L. J., Woodward, M. J. and Hirsch, P. R. 2016. Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. Scientific Reports. 6, p. 25858. https://doi.org/10.1038/srep25858
Metatranscriptomic census of active protists in soils
A - Papers appearing in refereed journals
Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M. and Urich, T. 2015. Metatranscriptomic census of active protists in soils. The ISME Journal. 9, pp. 2178-2190. https://doi.org/10.1038/ismej.2015.30
Soil pH determines microbial diversity and composition in the Park Grass Experiment
A - Papers appearing in refereed journals
Zhalnina, K., Dias, R., De Quadros, P. D., Davis-Richardson, A., Camargo, F. A. O., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2015. Soil pH determines microbial diversity and composition in the Park Grass Experiment. Microbial Ecology. 69, pp. 395-406. https://doi.org/10.1007/s00248-014-0530-2
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038
Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity
A - Papers appearing in refereed journals
Liang, Y., Wu, Liyou, Clark, I. M., Xue, K., Yang, Y., Van Nostrand, J. D., Deng, Y., He, Z., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun, B. and Zhou, J. 2015. Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity. mBio. 6, pp. e00240-15. https://doi.org/10.1128/mBio.00240-15
The Rothamsted Long-term Experiments
A - Papers appearing in refereed journals
Macdonald, A. J., Powlson, D. S., Poulton, P. R., Watts, C. W., Clark, I. M., Storkey, J., Hawkins, N. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2015. The Rothamsted Long-term Experiments. Aspects of Applied Biology. 128.
Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria
A - Papers appearing in refereed journals
Tahseen, Q. and Clark, I. M. 2014. Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria. Journal Of Natural History. 48, pp. 1485-1502. https://doi.org/10.1080/00222933.2013.873088
The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment
C2 - Non-edited contributions to conferences
Robinson, R. R., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2014. The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment. American Phytopathological Society (APS).
Data analysis for 16S microbial profiling from different benchtop sequencing platforms
A - Papers appearing in refereed journals
Pylro, V. S., Roesch, L. F. W., Morais, D. K., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2014. Data analysis for 16S microbial profiling from different benchtop sequencing platforms. Journal of Microbiological Methods. 107 (December), pp. 30-37. https://doi.org/10.1016/j.mimet.2014.08.018
Potential mineralization and nitrification in volcanic grassland soils in Chile
A - Papers appearing in refereed journals
Cardenas, L. M., Hatch, D. J., Scholefield, D., Jhurreea, D., Clark, I. M., Hirsch, P. R., Salazar, F., Rao-Ravella, S. and Alfaro, M. 2013. Potential mineralization and nitrification in volcanic grassland soils in Chile. Soil Science and Plant Nutrition. 59, pp. 380-391. https://doi.org/10.1080/00380768.2013.789395
Culture-independent molecular approaches to microbial ecology in soil and rhizosphere
B - Book chapters etc edited externally
Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2013. Culture-independent molecular approaches to microbial ecology in soil and rhizosphere. in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 45-55
Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments
A - Papers appearing in refereed journals
Zhalnina, K., De Quadros, P. D., Gano, K. A., Davis-Richardson, A., Fagen, J. R., Brown, C. T., Giongo, A., Drew, J. C., Sayavedra-Soto, L. A., Arp, D. J., Camargo, F. A. O., Daroub, S. H., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2013. Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments. Frontiers in Microbiology. 4, p. 104. https://doi.org/10.3389/fmicb.2013.00104
Structure, fluctuation and magnitude of a natural grassland soil metagenome
A - Papers appearing in refereed journals
Delmont, T. O., Prestat, E., Keegan, K. P., Faubladier, M., Robe, P., Clark, I. M., Pelletier, E., Hirsch, P. R., Meyer, F., Gilbert, J. A., Le Paslier, D., Simonet, P. and Vogel, T. M. 2012. Structure, fluctuation and magnitude of a natural grassland soil metagenome. The ISME Journal. 6, pp. 1677-1687. https://doi.org/10.1038/ismej.2011.197
Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment
A - Papers appearing in refereed journals
Clark, I. M., Buchkina, N., Jhurreea, D., Goulding, K. W. T. and Hirsch, P. R. 2012. Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment. Philosophical Transactions of the Royal Society B-Biological Sciences. 367, pp. 1235-1244. https://doi.org/10.1098/rstb.2011.0314
Metagenomic comparison of direct and indirect soil DNA extraction approaches
A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Clark, I. M., Simonet, P. and Vogel, T. M. 2011. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86 (3), pp. 397-400. https://doi.org/10.1016/j.mimet.2011.06.013
Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control
C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2011. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control.
Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia
A - Papers appearing in refereed journals
Rosso, L. C., Finetti-Sialer, M. M., Hirsch, P. R., Ciancio, A., Kerry, B. R. and Clark, I. M. 2011. Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia. Applied Microbiology and Biotechnology. 90, pp. 1981-1994. https://doi.org/10.1007/s00253-011-3282-7
Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil
A - Papers appearing in refereed journals
Macdonald, C. A., Clark, I. M., Hirsch, P. R., Zhao, F-J. and McGrath, S. P. 2011. Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil. Applied and Environmental Microbiology. 77, pp. 4626-4633. https://doi.org/10.1128/AEM.02232-10
Impacts of land use change on denitrifying bacteria and nitrous oxide emissions
C2 - Non-edited contributions to conferences
Hirsch, P. R., Jhurreea, D., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2011. Impacts of land use change on denitrifying bacteria and nitrous oxide emissions. Abstracts Theo Murphy Scientific Meeting: Nitrous Oxide, the Forgotten Greenhouse Gas, Chicheley, 23-24 May 2011 .
Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils
A - Papers appearing in refereed journals
Macdonald, C. A., Clark, I. M., Zhao, F-J., Hirsch, P. R., Singh, B. K. and McGrath, S. P. 2011. Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biology and Biochemistry. 43, pp. 932-941. https://doi.org/10.1016/j.soilbio.2011.01.004
Accessing the soil metagenome for studies of microbial diversity
A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Cecillon, S., Clark, I. M., Constancias, F., Simonet, P., Hirsch, P. R. and Vogel, T. M. 2011. Accessing the soil metagenome for studies of microbial diversity. Applied and Environmental Microbiology. 77 (4), pp. 1315-1324. https://doi.org/10.1128/AEM.01526-10
Soil without plants: the consequences for microorganisms and mesofauna
C1 - Edited contributions to conferences/learned societies
Goulding, K. W. T., Murray, P. J., Sohi, S. P., Gilliam, L. M., Williams, J. K., Clark, I. M. and Hirsch, P. R. 2010. Soil without plants: the consequences for microorganisms and mesofauna. Gilkes, R. and Prakongkep, N. (ed.) Proceedings 19th World Congress of Soil Science, Brisbane, 1-6 August 2010 . Australian Society of Soil Science, Warragul. pp. 1622-1625
Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK
C2 - Non-edited contributions to conferences
Wu, Liyou, Liang, Y., Clark, I. M., Wue, K., Deng, Y., He, Z., Van Nostrand, J., Macdonald, C., Hirsch, P. R., McGrath, S. P. and Zhou, J. 2010. Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .
Relative impact of soil, metal source and metal concentration on bacterial community structure and community tolerance
A - Papers appearing in refereed journals
Macdonald, C. A., Yang, X., Clark, I. M., Zhao, F-J., Hirsch, P. R. and McGrath, S. P. 2010. Relative impact of soil, metal source and metal concentration on bacterial community structure and community tolerance. Soil Biology and Biochemistry. 42, pp. 1408-1417. https://doi.org/10.1016/j.soilbio.2010.05.002
Targeting the active bacterial communities in soil pores
C2 - Non-edited contributions to conferences
Mccabe, D., Clark, I. M., Sohi, S., Shaw, E. and Hirsch, P. R. 2010. Targeting the active bacterial communities in soil pores. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .
Effects of long-term fertilization on spatial distribution patterns of microbial functional genes from the Rothamsted Experimental site
C2 - Non-edited contributions to conferences
Liang, Y., Wu, Liyou, Clark, I. M., Xue, K., Deng, Y., He, Z., Hirsch, P. R., McGrath, S. P. and Zhou, J. 2010. Effects of long-term fertilization on spatial distribution patterns of microbial functional genes from the Rothamsted Experimental site. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .
Long-term agricultural experiments reveal N influence on ammonia oxidizers and the predominance of CA. nitrososphaera
C2 - Non-edited contributions to conferences
Giongo, A., Gano,K., Roesch, L., Casella, G., Daroub, S., Ramiez, K., Sayavedra-Soto, L., Arp, D., Clark, I. M., Hirsch, P. R., McGrath, S. P. and Triplett, E. 2010. Long-term agricultural experiments reveal N influence on ammonia oxidizers and the predominance of CA. nitrososphaera. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .
Soil metagenomics: can we access the diversity?
C2 - Non-edited contributions to conferences
Delmont, T., Cecillon, S., Clark, I. M., Simonet, P., Hirsch, P. R. and Vogel, T. 2010. Soil metagenomics: can we access the diversity? Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .
Culture-independent molecular techniques for soil microbial ecology
A - Papers appearing in refereed journals
Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2010. Culture-independent molecular techniques for soil microbial ecology. Soil Biology and Biochemistry. 42 (6), pp. 878-887. https://doi.org/10.1016/j.soilbio.2010.02.019
Role of antecedent soil moisture on microbial populations involved in gaseous N2O emissions - use of isotopomers to understand sources
C2 - Non-edited contributions to conferences
Cardenas, L. M., Bol, R., Bergstermann, A., Meijide, A., Hirsch, P. R., Jhurreea, D., Clark, I. M., Gilliam, L., Goulding, K. W. T., Well, R. and Scholefield, D. 2010. Role of antecedent soil moisture on microbial populations involved in gaseous N2O emissions - use of isotopomers to understand sources. Abstracts Stable Isotope Mass-Spectrometry User Group (SIMSUG) Meeting, Exeter, 28-30 April 2010 .
Are long-term changes in soil organic matter reflected in the soil communities?
C2 - Non-edited contributions to conferences
Murray, P. J., Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Brookes, P. C. 2009. Are long-term changes in soil organic matter reflected in the soil communities?
Are long-term changes in soil organic matter reflected in the soil communities?
C2 - Non-edited contributions to conferences
Brookes, P. C., Hirsch, P. R., Gilliam, L. M., Clark, I. M., Sohi, S. P., Williams, J. K. and Murray, P. J. 2009. Are long-term changes in soil organic matter reflected in the soil communities? Abstracts 2009 International Annual Meetings of ASA-CSSA-SSSA: Footprints in the Landscape: Sustainability through Plant and Soil Sciences, Pittsburgh, 1-5 November 2009 .
Are long-term changes in soil organic matter reflected in the soil communities?
C2 - Non-edited contributions to conferences
Murray, P. J., Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Brookes, P. C. 2009. Are long-term changes in soil organic matter reflected in the soil communities? Abstracts Forming Bridges in a Changing World: Society of Nematologists and Soil Ecology Society Conference, Burlington, 12-15 July 2009 .
Through the keyhole: a key to open the bacterial lock; aka using BrdU to target pore space diversity
C2 - Non-edited contributions to conferences
Mccabe, D., Clark, I. M., Sohi, S. P., Shaw, L. and Hirsch, P. R. 2009. Through the keyhole: a key to open the bacterial lock; aka using BrdU to target pore space diversity. Abstracts Micro Soil: Integrating Biological, Physical and Chemical Techniques for the Study of Soil Micro-Habitats, Dundee, 16-17 September 2009 . pp. 24-25
Microbial diversity maintained in soils starved of plant inputs for 50 years
C2 - Non-edited contributions to conferences
Clark, I. M., Gilliam, L. M., Sohi, S. P., Williams, J., Murray, P. J. and Hirsch, P. R. 2009. Microbial diversity maintained in soils starved of plant inputs for 50 years. Abstracts BAGECO 10: Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Uppsala, 15-19 June 2009 . pp. 119
What plants do for soil and what happens after they've gone
C2 - Non-edited contributions to conferences
Hirsch, P. R. and Clark, I. M. 2009. What plants do for soil and what happens after they've gone. Abstracts Plant Soil Interactions: Joint Meeting of the Scottish Root Group and the Scottish Discussion Group of the British Society of Soil Science, Aberdeen, 3 November 2009 .
Sequencing the microbial metagenome of an iconic grassland soil, the Rothamsted Park Grass Experiment
C2 - Non-edited contributions to conferences
Hirsch, P. R. and Clark, I. M. 2009. Sequencing the microbial metagenome of an iconic grassland soil, the Rothamsted Park Grass Experiment. Abstracts BAGECO 10: Bacterial Genetics and Ecology - Coexisting on a Changing Planet, Uppsala, 15-19 June 2009 . pp. 73
Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities
A - Papers appearing in refereed journals
Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Murray, P. J. 2009. Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities. Soil Biology and Biochemistry. 41 (9), pp. 2021-2024. https://doi.org/10.1016/j.soilbio.2009.07.011
Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia
A - Papers appearing in refereed journals
Atkins, S. D., Peteira, B., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia. Annals of Applied Biology - AAB. 155, pp. 143-152. https://doi.org/10.1111/j.1744-7348.2009.00333.x
Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Atkins, S. D., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia. Biocontrol Science and Technology. 19, pp. 391-406. https://doi.org/10.1080/09583150902783793
Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S., Hirsch, P. R. and Kerry, B. R. 2009. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control. Abstracts IOBC 5th Meeting on Multitrophic Interactions in Soil, Uppsala, 11-13 June 2009 . pp. 27
Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2009. Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres. Letters in Applied Microbiology. 48 (1), pp. 71-76. https://doi.org/10.1111/j.1472-765X.2008.02489.x
Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type
C2 - Non-edited contributions to conferences
Macdonald, C., Yang, X., Clark, I. M., Hirsch, P. R. and McGrath, S. P. 2008. Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type. Abstracts 12th International Symposium on Microbial Ecology (ISME12): Microbial Diversity - Sustaining the Blue Planet, Cairns, 17-22 August 2008 .
Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent
C2 - Non-edited contributions to conferences
Kerry, B. R., Clark, I. M., Esteves, I., Finetti, M., Hirsch, P. R., Gomez-Gil, L., Manzanilla-Lopez, R. H. and Rosso, L. C. 2008. Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent. Abstracts 6th Seminario Cientifico Internacional de Sanidad Vegetal, Habana, 22-26 September 2008 .
Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment
C2 - Non-edited contributions to conferences
Clark, I. M. 2008. Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment. Abstracts BSSS Autumn Meeting on Something Old, Something New: Integrating Molecular Biology with Other Techniques in Soil Science, Harpenden, 17 September 2008 .
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale
A - Papers appearing in refereed journals
Dennis, P. G., Miller, A. J., Clark, I. M., Taylor, R. G., Valsami-Jones, E. and Hirsch, P. R. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75, pp. 12-18. https://doi.org/10.1016/j.mimet.2008.04.013
Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition
C2 - Non-edited contributions to conferences
Finetti-Sialer, M., Hirsch, P. R., Kerry, B. R. and Clark, I. M. 2008. Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition. Abstracts 5th International Congress of Nematology, Brisbane, 13-18 July 2008 .
Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment
A - Papers appearing in refereed journals
Clark, I. M. and Hirsch, P. R. 2008. Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment. Soil Biology and Biochemistry. 40, pp. 1090-1102. https://doi.org/10.1016/j.soilbio.2007.11.021
Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature
A - Papers appearing in refereed journals
Cookson, W. R., Osman, M., Marschner, P., Abaye, D. A., Clark, I. M., Murphy, D. V., Stockdale, E. A. and Watson, C. A. 2007. Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature. Soil Biology and Biochemistry. 39, pp. 744-756. https://doi.org/10.1016/j.soilbio.2006.09.022
DNA fingerprinting methodology to monitor infectivity, competition and rhizosphere competence of Pochonia chlamydosporia isolates within bulk soil, rhizoshere and Meloidogyne incognita egg masses
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S., Hirsch, P. R. and Kerry, B. R. 2006. DNA fingerprinting methodology to monitor infectivity, competition and rhizosphere competence of Pochonia chlamydosporia isolates within bulk soil, rhizoshere and Meloidogyne incognita egg masses. Abstracts AAB Conference on Advances in Nematology, London, 12 December 2006 .
Assessing genetic diversity of Pochonia chlamydosporia populations using ERIC primers
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Clark, I. M., Hirsch, P. R. and Kerry, B. R. 2006. Assessing genetic diversity of Pochonia chlamydosporia populations using ERIC primers. Abstracts 38th ONTA Annual Meeting, San Jose, 26-30 June 2006 .
Monitoring active bacterial communities in soil
C2 - Non-edited contributions to conferences
Clark, I. M., Cookson, W. R., Hampshire, D. and Hirsch, P. R. 2006. Monitoring active bacterial communities in soil. Abstracts 158th Meeting of the Society for General Microbiology, Warwick, 3-6 April 2006 . pp. 52
The influence of season, agricultural management and soil properties on gross nitrogen transformations and bacterial community structure
A - Papers appearing in refereed journals
Cookson, W. R., Marschner, P., Clark, I. M., Milton, N., Smirk, M. N., Murphy, D. V., Osman, M., Stockdale, E. A. and Hirsch, P. R. 2006. The influence of season, agricultural management and soil properties on gross nitrogen transformations and bacterial community structure. Australian journal of soil research. 44, pp. 453-465. https://doi.org/10.1071/SR05042
Distribution of environmental mycobacteria in Karonga District, Northern Malawi
A - Papers appearing in refereed journals
Chilima, B. Z., Clark, I. M., Floyd, S., Fine, P. E. M. and Hirsch, P. R. 2006. Distribution of environmental mycobacteria in Karonga District, Northern Malawi. Applied and Environmental Microbiology. 72 (4), pp. 2343-2350. https://doi.org/10.1128/AEM.72.4.2343-2350.2006
Impact of the nematophagous fungus Pochonia chlamydosporia on nematode and microbial populations
A - Papers appearing in refereed journals
Tahseen, Q., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2005. Impact of the nematophagous fungus Pochonia chlamydosporia on nematode and microbial populations. Communications in Agricultural and Applied Biological Sciences. 70(1), pp. 81-86.
The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus
A - Papers appearing in refereed journals
Atkins, S. D., Clark, I. M., Pande, S., Hirsch, P. R. and Kerry, B. R. 2005. The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus. FEMS Microbiology Ecology. 51 (2), pp. 257-264. https://doi.org/10.1016/j.femsec.2004.09.002
Impact of genetically modified bacterial inoculants on the soil microbial community
C1 - Edited contributions to conferences/learned societies
Hirsch, P. R. and Clark, I. M. 2004. Impact of genetically modified bacterial inoculants on the soil microbial community. GM Crops - Ecological Dimensions. Aspects of Applied Biology 74 . pp. 141-153
Fungal molecular diagnostics of nematophagous fungi
C1 - Edited contributions to conferences/learned societies
Atkins, S. D., Clark, I. M., Morton, C. O. and Kerry, B. R. 2004. Fungal molecular diagnostics of nematophagous fungi.
Investigation of three nematophagous fungi in two potato cyst nematode suppressive soils
C1 - Edited contributions to conferences/learned societies
Atkins, S. D., Sosnowska, D., Evans, V. J., Clark, I. M., Hirsch, P. R. and Kerry, B. R. 2004. Investigation of three nematophagous fungi in two potato cyst nematode suppressive soils.
Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, using real-time PCR
C2 - Non-edited contributions to conferences
Atkins, S. D., Clark, I. M., Sosnowska, D., Hirsch, P. R. and Kerry, B. R. 2003. Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, using real-time PCR. Abstracts 11th International Congress on Molecular Plant Microbe Interactions, St Petersburg, 18-27 July 2003 .
Vorticella sp. infestations in nematodes: a report
A - Papers appearing in refereed journals
Tahseen, Q., Clark, I. M. and Kerry, B. R. 2003. Vorticella sp. infestations in nematodes: a report. Nematologia mediterranea. 31, pp. 195-196.
Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting
A - Papers appearing in refereed journals
Atkins, S. D., Clark, I. M., Sosnowska, D., Hirsch, P. R. and Kerry, B. R. 2003. Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Applied and Environmental Microbiology. 69, pp. 4788-4793.
Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat
A - Papers appearing in refereed journals
Theodoulou, F. L., Clark, I. M., He, X-L., Pallett, K. E., Cole, D. J. and Hallahan, D. L. 2003. Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat. Pest Management Science. 59 (2), pp. 202-214. https://doi.org/10.1002/ps.576
Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes
A - Papers appearing in refereed journals
Atkins, S. D., Hidalgo-Diaz, L., Clark, I. M., Morton, C. O., Montes De Oca, N., Gray, P. A. and Kerry, B. R. 2003. Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes. Mycological Research. 107, pp. 206-212.
Initial testing of potential fungal biological control agents for potato cyst nematodes
C1 - Edited contributions to conferences/learned societies
Atkins, S. D., Clark, I. M., Sosnowska, D. and Kerry, B. R. 2002. Initial testing of potential fungal biological control agents for potato cyst nematodes. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 79-84
Impact of GM bacterial inoculants on the soil microbial community
C2 - Non-edited contributions to conferences
Hirsch, P. R. and Clark, I. M. 2002. Impact of GM bacterial inoculants on the soil microbial community. Abstracts International Conference on GMOs - Ecological Dimensions, Reading, 9-11 September 2002 .
Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes
C2 - Non-edited contributions to conferences
Gilliam, L. M., Clark, I. M. and Hirsch, P. R. 2002. Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 . pp. 86
The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow
A - Papers appearing in refereed journals
Clark, I. M., Mendum, T. A. and Hirsch, P. R. 2002. The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow. Antonie van Leeuwenhoek. 81, pp. 607-616.
The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere
C2 - Non-edited contributions to conferences
Clark, I. M. and Hirsch, P. R. 2002. The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 .
The fate of genetically modified rhizobial inoculants in the field
C2 - Non-edited contributions to conferences
Hirsch, P. R. and Clark, I. M. 2002. The fate of genetically modified rhizobial inoculants in the field. Abstracts 8th New Phytologist Symposium, Helsinki, 10-14 June 2002 .
Characterization of two novel Rhizobium leguminosarum bacteriophages from a field release site of genetically-modified rhizobia
A - Papers appearing in refereed journals
Mendum, T. A., Clark, I. M. and Hirsch, P. R. 2001. Characterization of two novel Rhizobium leguminosarum bacteriophages from a field release site of genetically-modified rhizobia. Antonie van Leeuwenhoek. 79 (2), pp. 189-197. https://doi.org/10.1023/a:1010238412538
The development of Verticillium chlamydosporium as a biological control agent of root-knot nematodes in organic vegetable production in Havana
C2 - Non-edited contributions to conferences
Hidalgo, L., Bourne, J. M., Rodriguez, M. G., Sanchez, L., Hernandez, M. A., Atkins, S. D., Clark, I. M. and Kerry, B. R. 2001. The development of Verticillium chlamydosporium as a biological control agent of root-knot nematodes in organic vegetable production in Havana. Abstracts 4th International Scientific Seminar of Plant Health/33rd Annual Meeting of the Organization of Nematologists of Tropical America (ONTA), Varadera, Cuba, 11-15 June 2001 . pp. 12
Monoterpenoid biosynthesis in glandular trichomes of labiate plants
B - Book chapters etc edited externally
Hallahan, D. L. 2000. Monoterpenoid biosynthesis in glandular trichomes of labiate plants. in: Advances in Botanical Research Elsevier.
Inference of symbiotic plasmid involvement in the population dynamics of two GM rhizobia under different agricultural practices
C2 - Non-edited contributions to conferences
Clark, I. M., Mendum, T. A. and Hirsch, P. R. 2000. Inference of symbiotic plasmid involvement in the population dynamics of two GM rhizobia under different agricultural practices. Abstracts 2nd Symposium of the EU Concerted Action on Mobile Genetic Elements' Contribution to Bacterial Adaptability and Diversity (MECBAD), Prague, 17-19 September 2000 . pp. 27-28
Role of ABC transporters in herbicide metabolism
C2 - Non-edited contributions to conferences
Theodoulou, F. L., Clark, I. M., Mitchell, V. J., Moss, S. R. and Pallett, K. E. 1999. Role of ABC transporters in herbicide metabolism. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Southampton, 8-10 September 1999 .
Nucleotide sequence of Cla 30 (Accession No. Y17386), a xenobiotic- inducible member of the GST superfamily from Triticum aestivum L. (PGR99-049)
K - Protein or DNA sequences submitted to database
Theodoulou, F. L., Clark, I. M., Pallett, K. E. and Hallahan, D. L. 1999. Nucleotide sequence of Cla 30 (Accession No. Y17386), a xenobiotic- inducible member of the GST superfamily from Triticum aestivum L. (PGR99-049).
Interactions between rhizobia and bacteriophages isolated from soil
C2 - Non-edited contributions to conferences
Mendum, T. A., Clark, I. M. and Hirsch, P. R. 1999. Interactions between rhizobia and bacteriophages isolated from soil. Abstracts BAGECO-6: 6th Symposium on Bacterial Genetics and Ecology, Florence, 20-24 June 1999 . pp. 17
The genetic implications of bacteriophages in Rhizobium leguminosarum
C2 - Non-edited contributions to conferences
Mendum, T. A., Clark, I. M. and Hirsch, P. R. 1999. The genetic implications of bacteriophages in Rhizobium leguminosarum. Abstracts 1st Symposium of the EU-concerted Action on Mobile Elements Contribution to Bacterial Adaptability (MECBAD), Le Mont Ste Odile, 23-27 April 1999 . pp. 23
A herbicide safener-induced MRP homologue from wheat
C2 - Non-edited contributions to conferences
Theodoulou, F. L., Clark, I. M., Pallett, K. E. and Hallahan, D. L. 1998. A herbicide safener-induced MRP homologue from wheat. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 77
HvMDR 2 - a novel P-glycoprotein homologue from barley
C2 - Non-edited contributions to conferences
Theodoulou, F. L., Davies, T. G. E., Hallahan, D. L. and Forde, B. G. 1998. HvMDR 2 - a novel P-glycoprotein homologue from barley. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 78
Nepetalactol oxidoreductase in trichomes of the catmint Nepeta racemosa
A - Papers appearing in refereed journals
Hallahan, D. L., West, J. M., Smiley, D. W. M. and Pickett, J. A. 1998. Nepetalactol oxidoreductase in trichomes of the catmint Nepeta racemosa. Phytochemistry. 48, pp. 421-427.
Molecular enzymology of plant cytochromes P450
C1 - Edited contributions to conferences/learned societies
Maughan, J. A., Nugent, J. H. A., Clark, I. M., Westlake, A. C. G. and Hallahan, D. L. 1997. Molecular enzymology of plant cytochromes P450. Proceedings Brighton Crop Protection Conference - Weeds, 1997 . pp. 597-604
Cloning and characterisation of a novel P-glycoprotein homologue from barley
A - Papers appearing in refereed journals
Davies, T. G. E., Theodoulou, F. L., Hallahan, D. L. and Forde, B. G. 1997. Cloning and characterisation of a novel P-glycoprotein homologue from barley. Gene. 199, pp. 195-202.
Expression of CYP71B7, a cytochrome P450 expressed sequence tag from Arabidopsis thaliana
A - Papers appearing in refereed journals
Maughan, J. A., Nugent, J. H. A. and Hallahan, D. L. 1997. Expression of CYP71B7, a cytochrome P450 expressed sequence tag from Arabidopsis thaliana. Archives of Biochemistry and Biophysics. 341 (1), pp. 104-111. https://doi.org/10.1006/abbi.1997.9943
Analysis of monoterpenoids in glandular trichomes of the catmint Nepeta racemosa
A - Papers appearing in refereed journals
Clark, L. J., Hamilton, J. G. C., Chapman, J. V., Rhodes, M. J. C. and Hallahan, D. L. 1997. Analysis of monoterpenoids in glandular trichomes of the catmint Nepeta racemosa. The Plant Journal. 11 (6), pp. 1387-1393. https://doi.org/10.1046/j.1365-313X.1997.11061387.x
Spatially distinct expression of two new cytochrome P450s in leaves of Nepeta racemosa : identification of a trichome-specific isoform
A - Papers appearing in refereed journals
Clark, I. M., Forde, B. G. and Hallahan, D. L. 1997. Spatially distinct expression of two new cytochrome P450s in leaves of Nepeta racemosa : identification of a trichome-specific isoform. Plant Molecular Biology. 33, pp. 875-885.
A. thaliana mRNA for cytochrome P450
K - Protein or DNA sequences submitted to database
Hallahan, D. L. 1996. A. thaliana mRNA for cytochrome P450.
N. racemosa mRNA for cytochrome P450, CYP71A6, partial
K - Protein or DNA sequences submitted to database
Clark, I. M. and Hallahan, D. L. 1996. N. racemosa mRNA for cytochrome P450, CYP71A6, partial.
Cytochrome P450 and herbicide selectivity
C2 - Non-edited contributions to conferences
Hallahan, D. L. 1996. Cytochrome P450 and herbicide selectivity. Abstracts SCI Conference on New Perspectives in Mechanisms of Herbicide Action, London, 13 March 1996 .
Development and essential oil accumulation in glandular trichomes of catmint (Nepeta racemosa )
C2 - Non-edited contributions to conferences
Clark, L. J., Hallahan, D. L., Bourett, T. M., Howard, R. J. and Hamilton, J. G. C. 1996. Development and essential oil accumulation in glandular trichomes of catmint (Nepeta racemosa ). Abstracts SEB Meeting on Control of Plant Development: Genes and Signals, Dublin, 21-25 July 1996 . pp. P21
Cloning and sequencing of a cytochrome P450, CYP89, from Arabidopsis thaliana (Accession No. U61231)(PGR 96-061)
A - Papers appearing in refereed journals
Courtney, K. J., Percival, F. W., Hallahan, D. L. and Christoffersen, R. E. 1996. Cloning and sequencing of a cytochrome P450, CYP89, from Arabidopsis thaliana (Accession No. U61231)(PGR 96-061). Plant Physiology (Plant Gene Register). 112, p. 445.
Chlorotoluron metabolism in resistant and susceptible biotypes of the grass weed Alopecurus mysuroides
A - Papers appearing in refereed journals
Hyde, R. J., Hallahan, D. L. and Bowyer, J. R. 1996. Chlorotoluron metabolism in resistant and susceptible biotypes of the grass weed Alopecurus mysuroides. Pesticide Science. 47 (2), pp. 185-190.
Cytochrome P-450 in plant/insect interactions: geraniol 10-hydroxylase and the biosynthesis of iridoid monoterpenoids
A - Papers appearing in refereed journals
Hallahan, D. L. and West, J. M. 1995. Cytochrome P-450 in plant/insect interactions: geraniol 10-hydroxylase and the biosynthesis of iridoid monoterpenoids. Drug Metabolism and Drug Interactions. 12, pp. 369-382.
Heterologous expression studies in yeast and tobacco of Thlaspi arvense CYP71
C2 - Non-edited contributions to conferences
Kelly, D. E., Hanley, S. Z., Mehmood, Z., Hallahan, D. L., Udvardi, M. and Kelly, S. L. 1995. Heterologous expression studies in yeast and tobacco of Thlaspi arvense CYP71. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .
Molecular analysis of cytochrome P450 cDNAs from Nepeta racemosa
C2 - Non-edited contributions to conferences
Clark, I. M., Crank, S. F., Forde, B. G. and Hallahan, D. L. 1995. Molecular analysis of cytochrome P450 cDNAs from Nepeta racemosa. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .
Molecular investigation into the presence and role of cytochrome P450 in Zea mays
C2 - Non-edited contributions to conferences
Maughan, J. A., Hallahan, D. L., Nugent, J. H. A. and Thomas, P. 1995. Molecular investigation into the presence and role of cytochrome P450 in Zea mays. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October 1995 .
A new cytochrome P450 identified from Arabidopsis thaliana by PCR using degenerate oligonuleotide primers
C2 - Non-edited contributions to conferences
Courtney, K. J., Percival, F., Felix, L., Hallahan, D. L. and Christoffersen, R. E. 1995. A new cytochrome P450 identified from Arabidopsis thaliana by PCR using degenerate oligonuleotide primers. Abstracts 3rd International Symposium on Cytochrome P450 Biodiversity, Woods Hole, 8-12 October, 1995 .
Purification and characterisation of an acyclic monoterpene primary alcohol: NADP+ oxidoreductase from catmint (Nepeta racemosa)
A - Papers appearing in refereed journals
Hallahan, D. L., West, J. M., Wallsgrove, R. M., Smiley, D. W. M., Dawson, G. W., Pickett, J. A. and Hamilton, J. G. C. 1995. Purification and characterisation of an acyclic monoterpene primary alcohol: NADP+ oxidoreductase from catmint (Nepeta racemosa). Archives of Biochemistry and Biophysics. 318 (1), pp. 105-112. https://doi.org/10.1006/abbi.1995.1210
Gland development on leaf surfaces of Nepeta racemosa
A - Papers appearing in refereed journals
Bourett, T. M., Howard, R. J., O'Keefe, D. P. and Hallahan, D. L. 1994. Gland development on leaf surfaces of Nepeta racemosa. International Journal Of Plant Sciences. 155 (6), pp. 623-632. https://doi.org/10.1086/297202
Molecular investigation of the role of cytochrome P450 in herbicide cross-resistant grass species
C2 - Non-edited contributions to conferences
Hyde, R., Hallahan, D. L. and Bowyer, J. R. 1994. Molecular investigation of the role of cytochrome P450 in herbicide cross-resistant grass species. Abstracts 2nd International Symposium on Cytochrome P450 of Microorganisms and Plants, Tokyo, 13-17 June, 1993 .
Cytochrome P450-catalysed monoterpenoid oxidation in catmint (Nepeta racemosa ) and avocado (Persea americana ): evidence for related enzymes with different activities
A - Papers appearing in refereed journals
Hallahan, D. L., Lau, S-M. C., Harder, P. A., Smiley, D. W. M., Dawson, G. W., Pickett, J. A., Christoffersen, R. E. and O'Keefe, D. P. 1994. Cytochrome P450-catalysed monoterpenoid oxidation in catmint (Nepeta racemosa ) and avocado (Persea americana ): evidence for related enzymes with different activities. Biochimica et Biophysica Acts (BBA) - General Subjects. 1201 (1), pp. 94-100. https://doi.org/10.1016/0304-4165(94)90156-2
Molecular studies of plant secondary metabolism; localization and regulation of terpenoid biosynthesis
C2 - Non-edited contributions to conferences
Crank, S. F., Forde, B. G. and Hallahan, D. L. 1994. Molecular studies of plant secondary metabolism; localization and regulation of terpenoid biosynthesis. Abstracts BBSRC Plant Molecular Biology II Mid-term Meeting, University of East Anglia, 6-8 July 1994 . pp. 20
Plant cytochrome P-450 and agricultural biotechnology
A - Papers appearing in refereed journals
Hallahan, D. L., Cheriton, A. K., Hyde, R., Clark, I. M. and Forde, B. G. 1993. Plant cytochrome P-450 and agricultural biotechnology. Biochemical Society Transactions. 21 (4), pp. 1068-1073. https://doi.org/10.1042/bst0211068
Herbicide resistance and cytochrome P-450
C1 - Edited contributions to conferences/learned societies
Hyde, R. J., Cheriton, A. K., Hallahan, D. L. and Bowyer, J. R. 1993. Herbicide resistance and cytochrome P-450. Proceedings Brighton Crop Protection Conference - Weeds, 1993 . pp. 549-554
Using plant secondary metabolites to engineer enhanced crop protection - progress with two contrasting approaches
C1 - Edited contributions to conferences/learned societies
Bennett, R., Hallahan, D. L. and Wallsgrove, R. M. 1993. Using plant secondary metabolites to engineer enhanced crop protection - progress with two contrasting approaches. Opportunities for Molecular Biology in Crop Protection. BCPC Monograph .
Characterisation of the delta11-palmitoyl-CoA-desaturase from Spodoptera littoralis (Lepidoptera: Noctuidae)
A - Papers appearing in refereed journals
Rodriguez, F., Hallahan, D. L., Pickett, J. A. and Camps, F. 1992. Characterisation of the delta11-palmitoyl-CoA-desaturase from Spodoptera littoralis (Lepidoptera: Noctuidae). Insect Biochemistry and Molecular Biology. 22 (2), pp. 143-148. https://doi.org/10.1016/0965-1748(92)90152-5
Potential of secondary metabolites in genetic engineering of crops for resistance
B - Book chapters etc edited externally
Hallahan, D. L., Pickett, J. A., Wadhams, L. J., Wallsgrove, R. M. and Woodcock, C. M. 1992. Potential of secondary metabolites in genetic engineering of crops for resistance. in: Gatehouse, A. M. R., Boulter, D. and Hilder, V. A. (ed.) Plant Genetic Manipulation for Crop Protection CABI International, Wallingford, Oxon (CABI). pp. 215-248
Interactions of avocado (Persea americana) cytochrome P-450 with monoterpenoids
A - Papers appearing in refereed journals
Hallahan, D. L., Nugent, J. H. A., Hallahan, B. J., Dawson, G. W., Smiley, D. W. M., West, J. M. and Wallsgrove, R. M. 1992. Interactions of avocado (Persea americana) cytochrome P-450 with monoterpenoids. Plant Physiology. 98, pp. 1290-1297.
Cytochrome P-450 catalysed monoterpene hydroxylation in Nepeta mussinii
A - Papers appearing in refereed journals
Hallahan, D. L., Dawson, G. W., West, J. M. and Wallsgrove, R. M. 1992. Cytochrome P-450 catalysed monoterpene hydroxylation in Nepeta mussinii. Plant Physiology and Biochemistry. 30, pp. 435-443.
Synthesis and biological activity of an azido derivative of Paclobutrazol, an inhibitor of gibberelin biosynthesis.
A - Papers appearing in refereed journals
Hallahan, D. L., Heasman, A. P., Grossel, M. C., Quigley, R., Hedden, P. and Bowyer, J. R. 1989. Synthesis and biological activity of an azido derivative of Paclobutrazol, an inhibitor of gibberelin biosynthesis. Plant Physiology. 88, pp. 1425-1429.
Secondary plant metabolites as targets for genetic modification of crop plants for pest resistance.
A - Papers appearing in refereed journals
Dawson, G. W., Hallahan, D. L., Mudd, A., Patel, M. M., Pickett, J. A., Wadhams, L. A. and Wallsgrove, R. M. 1989. Secondary plant metabolites as targets for genetic modification of crop plants for pest resistance. Pesticide Science. 27 (2), pp. 191-201. https://doi.org/10.1002/ps.2780270209
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