Evolutionary bi-stability in pathogen transmission mode

Van Den Bosch, F., Fraaije, B. A., Van Den Berg, F. and Shaw, M. W. 2010. Evolutionary bi-stability in pathogen transmission mode. Proceedings of the Royal Society of London Series B Biological Sciences. 277, pp. 1735-1742. https://doi.org/10.1098/rspb.2009.2211

Related outputs

A framework for evaluating the value of agricultural pest management decision support systems

A - Papers appearing in refereed journals

Helps, J., Van den Bosch, F., Paveley, N., Jorgensen, L. N., Holst, N. and Milne, A. E. 2024. A framework for evaluating the value of agricultural pest management decision support systems. European Journal of Plant Pathology. https://doi.org/10.1007/s10658-024-02878-1

The basic-reproduction number of infectious diseases in spatially structured host populations

A - Papers appearing in refereed journals

Van den Bosch, F., Helps, J. and Cunniffe, N. 2024. The basic-reproduction number of infectious diseases in spatially structured host populations. Oikos. p. e10616. https://doi.org/10.1111/oik.10616

Do Growers Using Solo Fungicides Affect the Durability of Disease Control of Growers Using Mixtures and Alternations? The Case of Spot-Form Net Blotch in Western Australia

A - Papers appearing in refereed journals

Helps, J., Lopez-Ruiz, F., Zerihun, A. and Van Den Bosch, F. 2024. Do Growers Using Solo Fungicides Affect the Durability of Disease Control of Growers Using Mixtures and Alternations? The Case of Spot-Form Net Blotch in Western Australia. Phytopathology. 114 (3), pp. 590-602. https://doi.org/10.1094/PHYTO-02-23-0050-R

Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape)

A - Papers appearing in refereed journals

King, K. M., Barr, L., Bousquet, L., Glaab, A., Canning, G., Ritchie, F., Kildea, S., Fraaije, B. A. and West, J. S. 2024. Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape). Plant Pathology. pp. 1-16. https://doi.org/10.1111/ppa.13897

Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles

A - Papers appearing in refereed journals

Vicentini, S. N. C., Hawkins, N. J., King, K. M., Moreira, S. I., Custodio, A. A. D. P., Junior, R. P. L., Portalanza, D., Garces-Fiallos, F. R., Krug, L. D., West, J. S., Fraaije, B. A., Junior, W. C. D. J. and Ceresini, P. C. 2023. Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles. Agronomy. 13 (5), p. 1238. https://doi.org/10.3390/agronomy13051238

The value of volunteer surveillance for the early detection of biological invaders

A - Papers appearing in refereed journals

Van Den Bosch, F., McRoberts, N., Bourhis, Y., Parnell, S. and Hassall, K. L. 2023. The value of volunteer surveillance for the early detection of biological invaders. Journal of Theoretical Biology. 560, p. 111385. https://doi.org/10.1016/j.jtbi.2022.111385

Lack of an Intron in Cytochrome b and Overexpression of Sterol 14 alpha-Demethylase Indicate a Potential Risk for QoI and DMI Resistance Development in Neophysopella spp. on Grapes

A - Papers appearing in refereed journals

Santos, R. F., Amorium, L., Wood, A. K. M., Bibiano, L. B. J. and Fraaije, B. A. 2021. Lack of an Intron in Cytochrome b and Overexpression of Sterol 14 alpha-Demethylase Indicate a Potential Risk for QoI and DMI Resistance Development in Neophysopella spp. on Grapes. Phytopathology. 111 (10), pp. 1726-1734. https://doi.org/10.1094/PHYTO-11-20-0514-R

Maximizing realized yield by breeding for disease tolerance: A case study for Septoria tritici blotch

A - Papers appearing in refereed journals

Van Den Bosch, F., Smith, J., Wright, P., Milne, A. E., Van Den Berg, F., Kock-Appelgren, P., Foulkes, J. and Paveley, N. 2021. Maximizing realized yield by breeding for disease tolerance: A case study for Septoria tritici blotch. Plant Pathology. https://doi.org/10.1111/ppa.13509

Epidemiological studies of pan-azole resistant Aspergillus fumigatus populations sampled during tulip cultivation show clonal expansion with acquisition of multi-fungicide resistance as potential driver

A - Papers appearing in refereed journals

Fraaije, B. A., Atkins, S. L., Santos, R. F., Hanley, S. J., West, J. S. and Lucas, J. 2021. Epidemiological studies of pan-azole resistant Aspergillus fumigatus populations sampled during tulip cultivation show clonal expansion with acquisition of multi-fungicide resistance as potential driver . Microorganisms. 9 (11), p. 2379. https://doi.org/10.3390/microorganisms9112379

Monitoring of Brazilian wheat blast field populations reveals resistance to QoI, DMI, and SDHI fungicides

A - Papers appearing in refereed journals

Vicentini, S. N. C., Casado, P. S., DeCarvalho, G., Moreira, S. I., Dorgian, A. F., Silva, T. C., Silva, A. G., Custodio, A. P. A., Gomes, A. C. S., Maciel, J. L. N., Hawkins, N. J., McDonald, B. A., Fraaije, B. A. and Ceresini, P. C. 2021. Monitoring of Brazilian wheat blast field populations reveals resistance to QoI, DMI, and SDHI fungicides. Plant Pathology. 71 (2), pp. 304-321. https://doi.org/10.1111/ppa.13470

Fungicide resistance management: maximising the effective life of plant protection products

A - Papers appearing in refereed journals

Corkley, I., Fraaije, B. A. and Hawkins, N. J. 2021. Fungicide resistance management: maximising the effective life of plant protection products. Plant Pathology. 00, pp. 1-20. https://doi.org/10.1111/ppa.13467

Fungicide resistance status and chemical control options for the brassica pathogen Pyrenopeziza brassicae

A - Papers appearing in refereed journals

King, K. M., Bucur, D. E., Hawkins, N. J., Kaczmarek, A. M., Duan, Y., Kildea, S., West, J. S. and Fraaije, B. A. 2021. Fungicide resistance status and chemical control options for the brassica pathogen Pyrenopeziza brassicae. Plant Pathology. 70 (9), pp. 2086-2103. https://doi.org/10.1111/ppa.13441

Modelling in cassava production and pest management under biotic and abiotic constraints

A - Papers appearing in refereed journals

Alonso Chavez, V., Milne, A. E., Van Den Bosch, F., Pita, J. and Mcquaid, C. F. 2021. Modelling in cassava production and pest management under biotic and abiotic constraints. Plant Molecular Biology. https://doi.org/10.1007/s11103-021-01170-8

Contrasting levels of genetic predictability in the evolution of resistance to major classes of fungicides

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2021. Contrasting levels of genetic predictability in the evolution of resistance to major classes of fungicides. Molecular Ecology. https://doi.org/10.1111/mec.15877

Artificial neural networks for monitoring network optimisation—a practical example using a national insect survey

A - Papers appearing in refereed journals

Bourhis, Y., Bell, J. R., Van Den Bosch, F. and Milne, A. E. 2021. Artificial neural networks for monitoring network optimisation—a practical example using a national insect survey. Environmental Modelling and Software. 135, p. 104925. https://doi.org/10.1016/j.envsoft.2020.104925

Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Stephens, C., Olmez, F., Blyth, H., McDonald, M., Bansal, A., Turgay, E. B., Hahn, F., Saintenac, C., Nekrasov, V., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2021. Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. Molecular Plant Pathology. 22 (9), pp. 1121-1133. https://doi.org/10.1111/mpp.13101

The Multi-Fungicide Resistance Status of Aspergillus fumigatus Populations in Arable Soils and the Wider European Environment

A - Papers appearing in refereed journals

Fraaije, B. A., Atkins, S. L., Hanley, S. J., Macdonald, A. J. and Lucas, J. 2020. The Multi-Fungicide Resistance Status of Aspergillus fumigatus Populations in Arable Soils and the Wider European Environment. Frontiers in Microbiology. 11, p. 599233. https://doi.org/10.3389/fmicb.2020.599233

Modelling lifestyle changes in Insect endosymbionts, from insect mutualist to plant pathogen

A - Papers appearing in refereed journals

Manning-Smith, R., Alonso Chavez, V., Helps, J., Shaw, M. W. and Van Den Bosch, F. 2020. Modelling lifestyle changes in Insect endosymbionts, from insect mutualist to plant pathogen. Evolutionary Ecology. 34, p. 867–891. https://doi.org/10.1007/s10682-020-10071-z

The one health problem of azole resistance in Aspergillus fumigatus: current insights and future research agenda

A - Papers appearing in refereed journals

Verweij, P. E., Lucas, J., Arendrup, M. C., Bowyer, P., Brinkmann, A. J. F., Denning, D. W., Dyer, P. S., Fisher, M. C., Geenen, P. L., Gisi, U., Hermann, D., Hoogendijk, A., Kiers, E., Lagrou, K., Melchers, W. J. G., Rhodes, J., Rietveld, A. G., Schoustra, S. E., Stenzel, K., Zwaan, B. J. and Fraaije, B. A. 2020. The one health problem of azole resistance in Aspergillus fumigatus: current insights and future research agenda. Fungal biology reviews. 34, pp. 202-214. https://doi.org/10.1016/j.fbr.2020.10.003

Widespread distribution of resistance to triazole fungicides in Brazilian populations of the wheat blast pathogen

A - Papers appearing in refereed journals

Poloni, N. M., Carvalho, G., Vicentini, S. N. C., Dorigan, A. F., Maciel, J. L. N., McDonald, B. A., Moreira, S. I., Hawkins, N. J., Fraaije, B. A., Kelly, D. E., Kelly, S. L. and Ceresini, P. C. 2020. Widespread distribution of resistance to triazole fungicides in Brazilian populations of the wheat blast pathogen. Plant Pathology. https://doi.org/10.1111/ppa.13288

Novel Multiplex and Loop-Mediated Isothermal Amplification (LAMP) Assays for Rapid Species and Mating-Type Identification of Oculimacula acuformis and O. yallundae (Causal Agents of Cereal Eyespot), and Application for Detection of Ascospore Dispersal and in planta Use

A - Papers appearing in refereed journals

King, K. M., Eyres, G. J., West, J. S., Siraf, C., Matusinsky, P., Palicova, J., Canning, G., Bateman, G. L., Fraaije, B. A. and Dyer, P. S. 2020. Novel Multiplex and Loop-Mediated Isothermal Amplification (LAMP) Assays for Rapid Species and Mating-Type Identification of Oculimacula acuformis and O. yallundae (Causal Agents of Cereal Eyespot), and Application for Detection of Ascospore Dispersal and in planta Use. Phytopathology. https://doi.org/10.1094/PHYTO-04-20-0116-R

Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops: An evaluation from long‐term field experiments

A - Papers appearing in refereed journals

Van Den Bosch, F., Blake, J., Gosling, P., Helps, J. C. and Paveley, N. 2020. Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops: An evaluation from long‐term field experiments. Plant Pathology. 69 (4), pp. 631-641. https://doi.org/10.1111/ppa.13155

Determinants of optimal insecticide resistance management strategies

A - Papers appearing in refereed journals

Helps, J. C., Paveley, N. D., White, S. and Van Den Bosch, F. 2020. Determinants of optimal insecticide resistance management strategies. Journal of Theoretical Biology. 503, p. 110383. https://doi.org/10.1016/j.jtbi.2020.110383

UK aphid migration percentiles, covariates and model outputs from the Rothamsted Insect Survey's 12.2 m suction-trap network: 1965 to 2018

N - Datasets

Bourhis, Y., Bell, J. R., Van Den Bosch, F. and Milne, A. E. 2020. UK aphid migration percentiles, covariates and model outputs from the Rothamsted Insect Survey's 12.2 m suction-trap network: 1965 to 2018. Rothamsted Research. https://doi.org/10.23637/rothamsted.979yv

The effect of competition on the control of invading plant pathogens

A - Papers appearing in refereed journals

Sharp, R.T., Van Den Bosch, F. and Shaw, M. W. 2020. The effect of competition on the control of invading plant pathogens. Journal of Applied Ecology. 57 (7), pp. 1403-1412. https://doi.org/10.1111/1365-2664.13618

What makes or breaks a campaign to stop an invading plant pathogen?

A - Papers appearing in refereed journals

Milne, A., Gottwald, T., Parnell, S. R., Alonso Chavez, V. and Vandenbosch, F. 2020. What makes or breaks a campaign to stop an invading plant pathogen? PLOS Computational Biology. 16 (2), p. e1007570. https://doi.org/10.1371/journal.pcbi.1007570

A phylogenetically distinct lineage of Pyrenopeziza brassicae associated with chlorotic leaf spot of Brassicaceae in North America

A - Papers appearing in refereed journals

Carmody, S., King, K. M., Ocamb, C., Fraaije, B. A., West, J. S. and Du Toit, L. 2019. A phylogenetically distinct lineage of Pyrenopeziza brassicae associated with chlorotic leaf spot of Brassicaceae in North America . Plant Pathology. 69 (3), pp. 518-537. https://doi.org/10.1111/ppa.13137

Quantifying the hidden costs of imperfect detection for early detection surveillance

A - Papers appearing in refereed journals

Mastin, A. J., Van Den Bosch, F., Van Den Berg, F. and Parnell, S. R. 2019. Quantifying the hidden costs of imperfect detection for early detection surveillance. Philosophical Transactions of the Royal Society B-Biological Sciences. 374 (1776). https://doi.org/10.1098/rstb.2018.0261

Translating surveillance data into incidence estimates

A - Papers appearing in refereed journals

Bourhis, Y., Gotwald, T. R. and Van Den Bosch, F. 2019. Translating surveillance data into incidence estimates. Philosophical Transactions of the Royal Society B-Biological Sciences. 374 (1776). https://doi.org/10.1098/rstb.2018.0262

First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus

A - Papers appearing in refereed journals

King, K. M., Hawkins, N. J., Atkins, S. L., Dyer, P. S., West, J. S. and Fraaije, B. A. 2019. First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus . Mycoses. https://doi.org/10.1111/myc.12959

Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici

Conference paper

Stephens, C., Blyth, H., Olmez, F., Turgay, E. B., Chen, H., McDonald, M., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2019. Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici. Molecular Biology of Plant Pathogens (MBPP) Conference. John Innes Centre, Norwich, UK 18 Mar 2019

Sampling for disease absence-deriving informed monitoring from epidemic traits

A - Papers appearing in refereed journals

Bourhis, Y., Gottwald, T.R., Lopez-Ruiz, F.J., Patarapuwadol, S. and Van Den Bosch, F. 2019. Sampling for disease absence-deriving informed monitoring from epidemic traits. Journal of Theoretical Biology. 461, pp. 8-16. https://doi.org/10.1016/j.jtbi.2018.10.038

Impact of epoxiconazole on Fusarium head blight control, grain yield and deoxynivalenol accumulation in wheat

A - Papers appearing in refereed journals

Duan, Y., Xiao, X., Li, T., Chen, W., Wang, J., Fraaije, B. A. and Zhou, M. G. 2018. Impact of epoxiconazole on Fusarium head blight control, grain yield and deoxynivalenol accumulation in wheat. Pesticide Biochemistry and Physiology. 152, pp. 138-147. https://doi.org/10.1016/j.pestbp.2018.09.012

Simultaneous detection of multiple benzimidazole resistant β-tubulin variants of Botrytis cinerea using loop mediated isothermal amplification

A - Papers appearing in refereed journals

Duan, Y., Yang, Y., Wang, J. X., Chen, C. J., Steinberg, G., Fraaije, B. A. and Zhou, M. G. 2018. Simultaneous detection of multiple benzimidazole resistant β-tubulin variants of Botrytis cinerea using loop mediated isothermal amplification. Plant Disease. 102 (10), pp. 2016-2024. https://doi.org/10.1094/PDIS-03-18-0542-RE

Development and application of a simple, rapid and sensitive method for detecting moderately carbendazim‐resistant isolates in Botrytis cinerea

A - Papers appearing in refereed journals

Duan, Y. B., Yang, Y., Li, M. X., Fraaije, B. A. and Zhou, M. G. 2018. Development and application of a simple, rapid and sensitive method for detecting moderately carbendazim‐resistant isolates in Botrytis cinerea. Annals of Applied Biology - AAB. 172 (3), pp. 355-365. https://doi.org/10.1111/aab.12426

Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

Conference poster

Stephens, C., Blyth, H., Olmez, F., McDonald, M., Solomon, P., Milgate, A., Chen, H., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2018. Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. British Society of Plant Pathology Presidential Meeting, Warwick 2018. Warwick University 10 Dec 2018 https://doi.org/N/A

Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations?

A - Papers appearing in refereed journals

Elderfield, J. A. D., Lopez-Ruiz, F. J., Van Den Bosch, F. and Cunniffe, N. J. 2018. Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations? Phytopathology. 108 (7), pp. 803-817. https://doi.org/10.1094/PHYTO-08-17-0277-R

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

A - Papers appearing in refereed journals

Kema, G. H. J., Mirzadi Gohari, A., Aouini, L., Gibriel, H. A. Y., Ware, S. B., Van Den Bosch, F., Manning-Smith, R., Alonso Chavez, V., Helps, J., Ben M’Barek, S., Mehrabi, R., Diaz-Trujillo, C., Zamani, E., Schouten, H. J., Van Der Lee, T. A. J., Waalwijk, C., de Waard, M. A., de Wit, P. J. G. M., Verstappen, E. C. P., Thomma, B. P. H. J., Meijer, H. J. G. and Seidl, M.l F. 2018. Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance. Nature Genetics. 50 (3), pp. 375-380. https://doi.org/10.1038/s41588-018-0052-9

Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops

A - Papers appearing in refereed journals

Van Den Bosch, F., Lopez-Ruiz, F., Oliver, R., Paveley, N., Helps, J. and Van Den Berg, F. 2018. Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops. Plant Pathology. 67 (3), pp. 549-560. https://doi.org/10.1111/ppa.12787

Non‐target site SDHI resistance is present as standing genetic variation in field populations of Zymoseptoria tritici

A - Papers appearing in refereed journals

Yamashita, M. and Fraaije, B. A. 2018. Non‐target site SDHI resistance is present as standing genetic variation in field populations of Zymoseptoria tritici. Pest Management Science. 74 (3), pp. 672-681. https://doi.org/10.1002/ps.4761

Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas)

A - Papers appearing in refereed journals

King, K. M., Krivova, V., Canning, G. G. M., Hawkins, N. J., Kaczmarek, A. M., Perryman, S. A. M., Dyer, P. S., Fraaije, B. A. and West, J. S. 2018. Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas). Plant Pathology. 67 (1), pp. 167-174. https://doi.org/10.1111/ppa.12717

Changes in field dose–response curves for demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) fungicides against Zymoseptoria tritici, related to laboratory sensitivity phenotyping and genotyping assays

A - Papers appearing in refereed journals

Blake, J. J., Gosling, P., Fraaije, B. A., Burnett, F. J., Knight, S. M., Kildea, S. and Paveley, N. D. 2018. Changes in field dose–response curves for demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) fungicides against Zymoseptoria tritici, related to laboratory sensitivity phenotyping and genotyping assays. Pest Management Science. 74 (2), pp. 302-313. https://doi.org/10.1002/ps.4725

Fitness Penalties in the Evolution of Fungicide Resistance

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2018. Fitness Penalties in the Evolution of Fungicide Resistance. Annual Review of Phytopathology. 56, pp. 339-360. https://doi.org/10.1146/annurev-phyto-080417-050012

Variability in commercial demand for tree saplings affects the probability of introducing exotic forest diseases

A - Papers appearing in refereed journals

Alonso Chavez, V., Gilligan, C. A. and Van Den Bosch, F. 2018. Variability in commercial demand for tree saplings affects the probability of introducing exotic forest diseases. Journal of Applied Ecology. 56 (1), pp. 80-89. https://doi.org/10.1111/1365-2664.13242

Growers’ risk perception and trust in control options for huanglongbing citrus-disease in Florida and California

A - Papers appearing in refereed journals

Milne, A., Teiken, C., Deledalle, F., Vandenbosch, F., Gottwalk, T. and McRoberts, N. 2018. Growers’ risk perception and trust in control options for huanglongbing citrus-disease in Florida and California. Crop Protection. 114, pp. 177-186. https://doi.org/10.1016/j.cropro.2018.08.028

Arable Crop Disease Alert System - AHDB Project Report 594

D1 - Technical reports: non-confidential

West, J. S., Canning, G., King, K. M., Fraaije, B. A. and Wili, S. 2018. Arable Crop Disease Alert System - AHDB Project Report 594. Stoneleigh Home Grown Cereals Authority (HGCA).

Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America

C2 - Non-edited contributions to conferences

Carmody, S., King, K. M., Classen, B., Fraaije, B. A., West, J. S., Ocamb, C. M. and du Toit, L. 2017. Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America. APS Annual Meeting, San Antonio, Texas, USA, August 5-9, 2017. American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-107-12-S5.1

Plant virus epidemiology: applications and prospects for mathematical modeling and analysis to improve understanding and disease control

A - Papers appearing in refereed journals

Jeger, M. J., Madden, L. V. and Van Den Bosch, F. 2017. Plant virus epidemiology: applications and prospects for mathematical modeling and analysis to improve understanding and disease control. Plant Disease. 102 (5), pp. 837-854. https://doi.org/10.1094/PDIS-04-17-0612-FE

Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments?

C1 - Edited contributions to conferences/learned societies

Young, C., Van Den Bosch, F., Fraaije, B. A., Burnett, F., Knight, S., Gosling, P. and Paveley, N. 2017. Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments? Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .

The basic reproduction number of vector-borne plant virus epidemics

A - Papers appearing in refereed journals

Van Den Bosch, F. and Jeger, M. J. 2017. The basic reproduction number of vector-borne plant virus epidemics. Virus Research. 241, pp. 196-202. https://doi.org/10.1016/j.virusres.2017.06.014

Physiological traits determining yield tolerance of wheat to foliar diseases

A - Papers appearing in refereed journals

Van Den Berg, F., Paveley, N. D., Bingham, I. J. and Van Den Bosch, F. 2017. Physiological traits determining yield tolerance of wheat to foliar diseases. Phytopathology. 107 (12), pp. 1468-1478. https://doi.org/10.1094/phyto-07-16-0283-r

Epidemiology: Past, Present, and Future Impacts on Understanding Disease Dynamics and Improving Plant Disease Management-A Summary of Focus Issue Articles

A - Papers appearing in refereed journals

Ojiambo, P. S., Yuen, J., Van Den Bosch, F. and Madden, L. V. 2017. Epidemiology: Past, Present, and Future Impacts on Understanding Disease Dynamics and Improving Plant Disease Management-A Summary of Focus Issue Articles. Phytopathology. 107 (10), pp. 1092-1094. https://doi.org/10.1094/PHYTO-07-17-0248-FI

Dose-dependent selection drives lineage replacement during the experimental evolution of SDHI fungicide resistance in Zymoseptoria tritici

A - Papers appearing in refereed journals

Gutierrez-Alonso, O., Hawkins, N. J., Cools, H. J., Shaw, M. W. and Fraaije, B. A. 2017. Dose-dependent selection drives lineage replacement during the experimental evolution of SDHI fungicide resistance in Zymoseptoria tritici. Evolutionary Applications. 10 (10), pp. 1055-1066. https://doi.org/10.1111/eva.12511

Considering behaviour to ensure the success of a disease control strategy

A - Papers appearing in refereed journals

McQuaid, C. F., Gilligan, C. A. and Van Den Bosch, F. 2017. Considering behaviour to ensure the success of a disease control strategy. Royal Society Open Science. 4 (12). https://doi.org/10.1098/rsos.170721

Azole sensitivity in Leptosphaeria pathogens of oilseed rape: the role of lanosterol 14 alpha-demethylase

A - Papers appearing in refereed journals

Sewell, T. R., Hawkins, N. J., Stotz, H. U., Huang, Y. J., Kelly, S. L., Kelly, D. E., Fraaije, B. A. and Fitt, B. D. L. 2017. Azole sensitivity in Leptosphaeria pathogens of oilseed rape: the role of lanosterol 14 alpha-demethylase. Scientific Reports. 7 (15849). https://doi.org/10.1038/s41598-017-15545-9

Surveillance to Inform Control of Emerging Plant Diseases: An Epidemiological Perspective

A - Papers appearing in refereed journals

Parnell, S. R., Van Den Bosch, F., Gottwald, T. R. and Gilligan, C. A. 2017. Surveillance to Inform Control of Emerging Plant Diseases: An Epidemiological Perspective. Annual Review of Phytopathology. 55 (1), pp. 591-610. https://doi.org/10.1146/annurev-phyto-080516-035334

Emergence of Resistance to Fungicides: The Role of Fungicide Dose

A - Papers appearing in refereed journals

Mikaberidze, A., Paveley, N., Bonhoeffer, S. and Van Den Bosch, F. 2017. Emergence of Resistance to Fungicides: The Role of Fungicide Dose. Phytopathology. 107 (5), pp. 545-560. https://doi.org/10.1094/PHYTO-08-16-0297-R

A method of determining where to target surveillance efforts in heterogeneous epidemiological systems

A - Papers appearing in refereed journals

Mastin, A. J., Van Den Bosch, F., Gottwald, T. R., Alonso Chavez, V. and Parnell, S. R. 2017. A method of determining where to target surveillance efforts in heterogeneous epidemiological systems. PLOS Computational Biology. 13 (8), p. e1005712. https://doi.org/10.1371/journal.pcbi.1005712

Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales

A - Papers appearing in refereed journals

Brown, N., Van Den Bosch, F., Parnell, S. and Denman, S. 2017. Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales. Proceedings of the Royal Society B: Biological Sciences. 284 (1859), pp. 1-7. https://doi.org/10.1098/rspb.2017.0547

Extending the durability of cultivar resistance by limiting epidemic growth rates

A - Papers appearing in refereed journals

Carolan, K., Helps, J., Van Den Berg, F., Bain, R., Paveley, N. and Van Den Bosch, F. 2017. Extending the durability of cultivar resistance by limiting epidemic growth rates. Proceedings of the Royal Society B: Biological Sciences. 284 (1863), pp. 1-8. https://doi.org/10.1098/rspb.2017.0828

Identifying circumstances under which high insecticide dose increases or decreases resistance selection

A - Papers appearing in refereed journals

Helps, J., Paveley, N. D. and Van Den Bosch, F. 2017. Identifying circumstances under which high insecticide dose increases or decreases resistance selection. Journal of Theoretical Biology. 428 (7 September), pp. 153-167. https://doi.org/10.1016/j.jtbi.2017.06.007

Data from: Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales

N - Datasets

Brown, N., Van Den Bosch, F., Parnell, S. and Denman, S. 2017. Data from: Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales. Dryad Data Repository. https://doi.org/10.5061/dryad.18157

Predicting Resistance by Mutagenesis: Lessons from 45 Years of MBC Resistance

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2016. Predicting Resistance by Mutagenesis: Lessons from 45 Years of MBC Resistance. Frontiers in Microbiology. 7, p. 1814. https://doi.org/10.3389/fmicb.2016.01814

Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability. Plant and Soil. 405 (1-2), pp. 381-396. https://doi.org/10.1007/s11104-015-2495-4

Monitoring invasive pathogens in plant nurseries for early-detection and to minimise the probability of escape

A - Papers appearing in refereed journals

Alonso Chavez, V., Parnell, S. and Van Den Bosch, F. 2016. Monitoring invasive pathogens in plant nurseries for early-detection and to minimise the probability of escape. Journal of Theoretical Biology. 407, pp. 290-302. https://doi.org/10.1016/j.jtbi.2016.07.041

Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants

C2 - Non-edited contributions to conferences

Kettles, G. J., King, R., Hooper, J., Skinner, W., Hargreaves, J., Kanyuka, K., Fraaije, B. A. and Rudd, J. J. 2016. Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants. IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number S6-3

The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis

A - Papers appearing in refereed journals

Kitchen, J. L., Van Den Bosch, F., Paveley, N. D., Helps, J. and Van Den Berg, F. 2016. The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis. PLOS ONE. 11 (8), p. e0161887. https://doi.org/10.1371/journal.pone.0161887

Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides.

A - Papers appearing in refereed journals

Mair, W., Lopez-Ruiz, F., Stammler, G ., Clark, W., Burnett, F., Hollomon, D., Ishii, H., Thind, T. S., Brown, J. K., Fraaije, B. A., Cools, H. J., Shaw, M., Fillinger, S., Walker, A. S., Mellado, E., Schnabel, G., Mehl, A. and Oliver, R. P. 2016. Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides. Pest Management Science. 72 (8), pp. 1449-1459. https://doi.org/10.1002/ps.4301

Dose and number of applications that maximise fungicide effective life exemplified by Zymoseptoria tritici on wheat - a model analysis

A - Papers appearing in refereed journals

Van Den Berg, F., Paveley, N. D. and Van Den Bosch, F. 2016. Dose and number of applications that maximise fungicide effective life exemplified by Zymoseptoria tritici on wheat - a model analysis. Plant Pathology. 65 (8), pp. 1380-1389. https://doi.org/10.1111/ppa.12558

Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes. Scientific Reports. 6, p. 25581. https://doi.org/10.1038/srep25581

Cassava brown streak disease and the sustainability of a clean seed system

A - Papers appearing in refereed journals

McQuaid, C. F., Sseruwagi, P., Pariyo, A. and Van Den Bosch, F. 2016. Cassava brown streak disease and the sustainability of a clean seed system. Plant Pathology. 65 (2), pp. 299-309. https://doi.org/10.1111/ppa.12453

Sigatoka Disease Complex of Banana in Brazil: Management Practices and Future Directions

A - Papers appearing in refereed journals

Brito Silva Darosci, F., Fraaije, B. A. and Miller, R. N. G. 2015. Sigatoka Disease Complex of Banana in Brazil: Management Practices and Future Directions. Outlooks on Pest Management. 26 (2), pp. 78-81. https://doi.org/10.1564/v26_apr_08

The effect of farmers' decisions on pest control with Bt crops: a billion dollar game of strategy

A - Papers appearing in refereed journals

Milne, A. E., Bell, J. R., Hutchison, W. D., Van Den Bosch, F., Mitchell, P. D., Crowder, D., Parnell, S. and Whitmore, A. P. 2015. The effect of farmers' decisions on pest control with Bt crops: a billion dollar game of strategy. PLOS Computational Biology. 11, p. e1004483. https://doi.org/10.1371/journal.pcbi.1004483

Designing strategies for epidemic control in a tree nursery: the case of ash dieback in the UK

A - Papers appearing in refereed journals

Alonso Chavez, V., Parnell, S. and Van Den Bosch, F. 2015. Designing strategies for epidemic control in a tree nursery: the case of ash dieback in the UK. Forests. 6 (11), pp. 4135-4145. https://doi.org/10.3390/f6114135

The use of mathematical models to guide fungicide resistance management decisions

B - Book chapters etc edited externally

Van Den Bosch, F., Fraaije, B. A., Oliver, R., Van Den Berg, F. and Paveley, N. 2015. The use of mathematical models to guide fungicide resistance management decisions. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 49-62

Evidence-based resistance management: a review of existing evidence

B - Book chapters etc edited externally

Van Den Bosch, F., Paveley, N., Fraaije, B. A., Van Den Berg, F. and Oliver, R. 2015. Evidence-based resistance management: a review of existing evidence. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 63-76

Modelling transmission characteristics and epidemic development of the tospovirus-thrip interaction

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Mcroberts, N. 2015. Modelling transmission characteristics and epidemic development of the tospovirus-thrip interaction. Arthropod-Plant Interactions. 9, pp. 107-120. https://doi.org/10.1007/s11829-015-9363-2

Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Cunniffe, N. J., Alonso Chavez, V. and Van Den Bosch, F. 2015. Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery. Proceedings of the Royal Society of London Series B Biological Sciences. 282, p. 20151478. https://doi.org/10.1098/rspb.2015.1478

Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution

A - Papers appearing in refereed journals

Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2015. Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution. Pest Management Science. 71 (2), pp. 207-215. https://doi.org/10.1002/ps.3781

Airborne sampling and optical sensing methods for macro scale mapping

C2 - Non-edited contributions to conferences

West, J. S., Canning, G., Heard, S., Fraaije, B. A., Bonants, P., Van Gent-Pelzer, M., Nicolaisen, M., Justesen, A. F. and Wili, S. G. 2015. Airborne sampling and optical sensing methods for macro scale mapping. Abstracts IPM Innovation in Europe, Poznan, 14-16 January 2015 . pp. 57

The evolution of fungicide resistance

B - Book chapters etc edited externally

Lucas, J. A., Hawkins, N. J. and Fraaije, B. A. 2015. The evolution of fungicide resistance. in: Sariaslani, S. and Gadd, G. M. (ed.) Advances in Applied Microbiology Vol.90 Elsevier.

Sterol biosynthesis inhibitors: modes of resistance and development of CYP51 mutations

C2 - Non-edited contributions to conferences

Hawkins, N. J. and Fraaije, B. A. 2014. Sterol biosynthesis inhibitors: modes of resistance and development of CYP51 mutations. 248th National Meeting of the Amercian Chemical Society (ACS) 10-14 August , San Francisco, CA, 2014. American Chemical Society (ACS).

Improving the predictive power of fungicide resistance risk assessment

C1 - Edited contributions to conferences/learned societies

Paveley, N., Grimmer, M., Powers, S. J. and Van Den Bosch, F. 2014. Improving the predictive power of fungicide resistance risk assessment. Dehneetal, H. W. (ed.) Modern fungicides and antifungal compounds, vol. 7 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 153-160

Response to 'Potential distribution of citrus black spot in the United States based on climatic conditions', Er et al. 2013

A - Papers appearing in refereed journals

Graham, J. H., Gottwald, T. R., Timmer, L. W., Bergamin Filho, A., Van Den Bosch, F., Irey, M. S., Taylor, E., Magarey, R. D. and Takeuchi, Y. 2014. Response to 'Potential distribution of citrus black spot in the United States based on climatic conditions', Er et al. 2013. European Journal of Plant Pathology. 139, pp. 231-234. https://doi.org/10.1007/s10658-014-0426-5

Mixtures as a fungicide resistance management tactic

A - Papers appearing in refereed journals

Van Den Bosch, F., Paveley, N., Van Den Berg, F., Hobbelen, P. and Oliver, R. 2014. Mixtures as a fungicide resistance management tactic. Phytopathology. 104, pp. 1264-1273. https://doi.org/10.1094/PHYTO-04-14-0121-RVW

The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment

C2 - Non-edited contributions to conferences

Robinson, R. R., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2014. The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment. American Phytopathological Society (APS).

Use of loop-mediated isothermal amplification assays to detect azole-insensitive CYP51- overexpressing strains of Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2014. Use of loop-mediated isothermal amplification assays to detect azole-insensitive CYP51- overexpressing strains of Zymoseptoria tritici. American Phytopathological Society (APS).

Evolution and spread of azole-insensitive Zymoseptoria tritici field isolates in the UK

C2 - Non-edited contributions to conferences

Fraaije, B. A., Atkins, S., Luo, J., Diez De La Fuente, P. and Hawkins, N. J. 2014. Evolution and spread of azole-insensitive Zymoseptoria tritici field isolates in the UK. American Phytopathological Society (APS).

Surveillance for invading plant pathogens: the use of epidemic models to quantify performance and optimise survey design

C2 - Non-edited contributions to conferences

Parnell, S. and Van Den Bosch, F. 2014. Surveillance for invading plant pathogens: the use of epidemic models to quantify performance and optimise survey design. Abstracts EFSA/EPPO Joint Workshop on Data Collection and Information Sharing in Plant Health, Parma, 1-3 April 2014 . pp. 5

Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae

A - Papers appearing in refereed journals

Carter, H. E., Fraaije, B. A., West, J. S., Kelly, S. L., Mehl, A., Shaw, M. W. and Cools, H. J. 2014. Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae. Molecular Plant Pathology. 15 (5), pp. 513-522. https://doi.org/10.1111/mpp.12106

Governing principles can guide fungicide-resistance management tactics

A - Papers appearing in refereed journals

Van Den Bosch, F., Oliver, R., Van Den Berg, F. and Paveley, N. 2014. Governing principles can guide fungicide-resistance management tactics. Annual Review of Phytopathology. 52, pp. 175-195. https://doi.org/10.1146/annurev-phyto-102313-050158

Sterol biosynthesis inhibitors: modes of resistance and development of CPY51 mutations

C2 - Non-edited contributions to conferences

Hawkins, N. J. and Fraaije, B. A. 2014. Sterol biosynthesis inhibitors: modes of resistance and development of CPY51 mutations. Abstracts 13th IUPAC International Congress of Pesticide Chemistry, San Francisco, 10-14 August 2014 . pp. 234

Evaluation of a matrix to calculate fungicide resistance risk

A - Papers appearing in refereed journals

Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2014. Evaluation of a matrix to calculate fungicide resistance risk. Pest Management Science. 70 (6), pp. 1008-1016. https://doi.org/10.1002/ps.3646

Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs

A - Papers appearing in refereed journals

Van Den Berg, F., Lannou, C., Gilligan, C. A. and Van Den Bosch, F. 2014. Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs. Evolutionary Applications. 7 (3), pp. 370-380. https://doi.org/10.1111/eva.12130

A generic risk-based surveying method for invading plant pathogens

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Riley, T. and Van Den Bosch, F. 2014. A generic risk-based surveying method for invading plant pathogens. Ecological Applications. 24 (4), pp. 779-790. https://doi.org/10.1890/13-0704.1

Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance

A - Papers appearing in refereed journals

Hawkins, N. J., Cools, H. J., Sierotzki, H., Shaw, M. W., Knogge, W., Kelly, S. L., Kelly, D. E. and Fraaije, B. A. 2014. Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance. Molecular Biology And Evolution. 31 (7), pp. 1793-1802. https://doi.org/10.1093/molbev/msu134

Sustainable crop protection: the storm before the calm?

C1 - Edited contributions to conferences/learned societies

Lucas, J. A. and Fraaije, B. A. 2014. Sustainable crop protection: the storm before the calm? Proceedings Dundee Conference Crop Protection in Northern Britain, Dundee, 25-26 February 2014 . pp. 61-70

Effects of plant pathogens on population dynamics and community composition in grassland ecosystems: two case studies

A - Papers appearing in refereed journals

Jeger, M. J., Salama, N. K. G., Shaw, M. W., Van Den Berg, F. and Van Den Bosch, F. 2014. Effects of plant pathogens on population dynamics and community composition in grassland ecosystems: two case studies. European Journal of Plant Pathology. 138, pp. 513-527. https://doi.org/10.1007/s10658-013-0325-1

The emergence of resistance to fungicides

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D. and Van Den Bosch, F. 2014. The emergence of resistance to fungicides. PLOS ONE. 9, p. e91910. https://doi.org/10.1371/journal.pone.0091910

Accounting for the Economic Risk Caused by Variation in Disease Severity in Fungicide Dose Decisions, Exemplified for Mycosphaerella graminicola on Winter Wheat

A - Papers appearing in refereed journals

Te Beest, D. E., Paveley, N. D., Shaw, M. W. and Van Den Bosch, F. 2013. Accounting for the Economic Risk Caused by Variation in Disease Severity in Fungicide Dose Decisions, Exemplified for Mycosphaerella graminicola on Winter Wheat. Phytopathology. 103 (7), pp. 666-672. https://doi.org/10.1094/PHYTO-05-12-0119-R

Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting

C2 - Non-edited contributions to conferences

Robinson, R., Mauchline, T. H., Hirsch, P. R., Jackson, R., Frost, H. and Fraaije, B. A. 2013. Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting. Schneider, C. (ed.) Abstracts 5th International Symposium on Plant Protection and Plant Health in Europe: Endophytes for Plant Protection: the State of the Art, Berlin, 26-29 May 2013 . DPG, Braunschweig. pp. 4-6

Optimal fungicide application timings for disease control are also an effective anti-resistance strategy: a case study for Zymoseptoria tritici (Mycosphaerella graminicola) on wheat

A - Papers appearing in refereed journals

Van Den Berg, F., Van Den Bosch, F. and Paveley, N. D. 2013. Optimal fungicide application timings for disease control are also an effective anti-resistance strategy: a case study for Zymoseptoria tritici (Mycosphaerella graminicola) on wheat. Phytopathology. 103, pp. 1209-1219. https://doi.org/10.1094/PHYTO-03-13-0061-R

New developments in identification and quantification of airborne inoculum

C2 - Non-edited contributions to conferences

West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.

The usefulness of fungicide mixtures and alternation for delaying the selection for resistance in populations of Mycosphaerella graminicola on winter wheat: a modeling analysis

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D., Oliver, R. P. and Van Den Bosch, F. 2013. The usefulness of fungicide mixtures and alternation for delaying the selection for resistance in populations of Mycosphaerella graminicola on winter wheat: a modeling analysis. Phytopathology. 103, pp. 690-707. https://doi.org/10.1094/PHYTO-06-12-0142-R

CPY51 paralogues and azole sensitivity in Rhynchosporium commune

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. CPY51 paralogues and azole sensitivity in Rhynchosporium commune. Abstracts 14th Congress of the European Society for Evolutionary Biology, Lisbon, 19-24 August 2013 . pp. 859

Mapping the adaptive landscape of Mycosphaerella graminicola CYP51 under selection by azole fungicides

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. Mapping the adaptive landscape of Mycosphaerella graminicola CYP51 under selection by azole fungicides. Abstracts 14th Congress of the European Society for Evolutionary Biology, Lisbon, 19-24 August 2013 . pp. 19

Constraints on the evolution of azole resistance in plant pathogenic fungi

A - Papers appearing in refereed journals

Cools, H. J., Hawkins, N. J. and Fraaije, B. A. 2013. Constraints on the evolution of azole resistance in plant pathogenic fungi. Plant Pathology. 62 (Suppl. 1), pp. 36-42. https://doi.org/10.1111/ppa.12128

Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Waalwijk, C., Van Der Lee, T., Fan, J., Atkins, S., West, J. S. and Fraaije, B. A. 2013. Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex. International Journal of Food Microbiology. 166, pp. 148-154. https://doi.org/10.1016/j.ijfoodmicro.2013.06.007

Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates

A - Papers appearing in refereed journals

Carter, H. E., Cools, H. J., West, J. S., Shaw, M. W. and Fraaije, B. A. 2013. Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates. Pest Management Science. 69 (9), pp. 1040-1048. https://doi.org/10.1002/ps.3585

One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat

C2 - Non-edited contributions to conferences

Lucas, J. A., Cools, H. J. and Fraaije, B. A. 2013. One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat. Abstracts Society for General Microbiology Autumn Conference, Brighton, 2-4 September 2013 . pp. 13

Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report)

D1 - Technical reports: non-confidential

Kleinkauf, N., Verweij, P. E., Arendrup, M. C., Donnelly, P. J., Cuenca-Estrella, M., Fraaije, B. A., Melchers, W. J. G., Adriaenssens, N., Kema, G. H. J., Ullmann, A., Bowyer, P. and Denning, D. W. 2013. Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report). ECDC, Stockholm. https://doi.org/10.2900/76274

CYP51 paralogues and azole sensitivity in Rhynchosporium commune

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. CYP51 paralogues and azole sensitivity in Rhynchosporium commune. Chinese Society for Plant Pathology.

Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications

C2 - Non-edited contributions to conferences

Fraaije, B. A., Atkins, S., Luo, J., De La Fuente, P. D., Hawkins, N. J. and Cools, H. J. 2013. Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications. Chinese Society for Plant Pathology.

Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2013. Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations. Chinese Society for Plant Pathology.

Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Cools, H. J. 2013. Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays. Chinese Society for Plant Pathology.

Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases

C2 - Non-edited contributions to conferences

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.

Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase

A - Papers appearing in refereed journals

Parker, J. E., Warrilow, A. G. S., Cools, H. J., Fraaije, B. A., Lucas, J. A., Rigdova, K., Griffiths, W. J., Kelly, D. E. and Kelly, S. L. 2013. Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase. Applied and Environmental Microbiology. 79, pp. 1639-1645. https://doi.org/10.1128/AEM.03246-12

Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty

A - Papers appearing in refereed journals

Lo Iacono, G., Van Den Bosch, F. and Gilligan, C. A. 2013. Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty. PLOS Computational Biology. 9, p. e1002870. https://doi.org/10.1371/journal.pcbi.1002870

The effect of Horsfall-Barratt category size on the accuracy and reliability of estimates of pecan scab severity

A - Papers appearing in refereed journals

Bock, C. H., Wood, B. W., Van Den Bosch, F., Parnell, S. and Gottwald, T. R. 2013. The effect of Horsfall-Barratt category size on the accuracy and reliability of estimates of pecan scab severity. Plant Disease. 97 (6), pp. 797-806. https://doi.org/10.1094/PDIS-08-12-0781-RE

Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function

A - Papers appearing in refereed journals

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytologist. 198 (3), pp. 821-835. https://doi.org/10.1111/nph.12193

High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach

A - Papers appearing in refereed journals

Van Den Berg, F., Gaucel, S., Lannou, C., Gilligan, C. A. and Van Den Bosch, F. 2013. High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach. Evolutionary Ecology. 27, pp. 409-428. https://doi.org/10.1007/s10682-012-9602-2

Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina

A - Papers appearing in refereed journals

Pariaud, B., Van Den Berg, F., Van Den Bosch, F., Powers, S. J., Kaltz, O. and Lannou, C. 2013. Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina. Evolutionary Applications. 6 (2), pp. 303-312. https://doi.org/10.1111/eva.12000

Update on mechanisms of azole resistance in Mycosphaerella graminicola and implications for future control

A - Papers appearing in refereed journals

Cools, H. J. and Fraaije, B. A. 2013. Update on mechanisms of azole resistance in Mycosphaerella graminicola and implications for future control. Pest Management Science. 69 (2), pp. 150-155. https://doi.org/10.1002/ps.3348

Role of inoculum sources in Rhynchosporium population dynamics and epidemics on barley

A - Papers appearing in refereed journals

Fitt, B. D. L., Atkins, S. D., Fraaije, B. A., Lucas, J. A., Newton, A. C., Looseley, M., Werner, P., Harrap, D., Ashworth, M., Southgate, J., Phillips, H. and Gilchrist, A. 2012. Role of inoculum sources in Rhynchosporium population dynamics and epidemics on barley. HGCA Project Report. 486.

The effect of the dose rate of a fungicide on the emergence of resistance

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2012. The effect of the dose rate of a fungicide on the emergence of resistance. American Phytopathological Society (APS).

The usefulness of concurrent, alternating, and mixture use of two high-risk fungicides as resistance management strategy

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2012. The usefulness of concurrent, alternating, and mixture use of two high-risk fungicides as resistance management strategy. American Phytopathological Society (APS).

Investigations into the molecular mechanisms responsible for the decline in sensitivity to DMI fungicides in Mycosphaerella graminicola populations

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Cools, H. J. 2012. Investigations into the molecular mechanisms responsible for the decline in sensitivity to DMI fungicides in Mycosphaerella graminicola populations. American Phytopathological Society (APS).

Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae

C2 - Non-edited contributions to conferences

Carter, H. E., Cools, H. J., West, J. S., Shaw, M., Mehl, A. and Fraaije, B. A. 2012. Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae. American Phytopathological Society (APS).

Population dynamics of a non-cultivated biennial plant Tragopogon pratensis infected by the autoecious demicyclic rust fungus Puccinia hysterium

A - Papers appearing in refereed journals

Salama, N. K. G., Van Den Bosch, F., Edwards, G. R., Heard, M. S. and Jeger, M. J. 2012. Population dynamics of a non-cultivated biennial plant Tragopogon pratensis infected by the autoecious demicyclic rust fungus Puccinia hysterium. Fungal Ecology. 5, pp. 530-542. https://doi.org/10.1016/j.funeco.2011.12.009

Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Gilks, W. R. and Van Den Bosch, F. 2012. Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring. Journal of Theoretical Biology. 305, pp. 30-36. https://doi.org/10.1016/j.jtbi.2012.03.009

An improved regulatory sampling method for mapping and representing plant disease from a limited number of samples

A - Papers appearing in refereed journals

Luo, W., Pietravalle, S., Parnell, S., Van Den Bosch, F., Gottwald, T. R., Irey, M. S. and Parker, S. R. 2012. An improved regulatory sampling method for mapping and representing plant disease from a limited number of samples. Epidemics. 4 (2), pp. 68-77. https://doi.org/10.1016/j.epidem.2012.02.001

The evolution of plant pathogens in response to host resistance: factors affecting the gain from deployment of qualitative and quantitative resistance

A - Papers appearing in refereed journals

Lo Iacono, G., Van Den Bosch, F. and Paveley, N. 2012. The evolution of plant pathogens in response to host resistance: factors affecting the gain from deployment of qualitative and quantitative resistance. Journal of Theoretical Biology. 304, pp. 152-163. https://doi.org/10.1016/j.jtbi.2012.03.033

Detection and quantification of airborne inoculum of Pyrenopeziza brassicae in Polish and UK winter oilseed rape crops by real-time PCR assays

A - Papers appearing in refereed journals

Karolewski, Z., Kaczmarek, J., Jedryczka, M., Cools, H. J., Fraaije, B. A., Lucas, J. A. and Latunde-Dada, A. O. 2012. Detection and quantification of airborne inoculum of Pyrenopeziza brassicae in Polish and UK winter oilseed rape crops by real-time PCR assays. Grana. 51, pp. 270-279. https://doi.org/10.1080/00173134.2011.653401

Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease

A - Papers appearing in refereed journals

Cunniffe, N. J., Stutt, R. O. J. H., Van Den Bosch, F. and Gilligan, C. A. 2012. Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease. Phytopathology. 102, pp. 365-380. https://doi.org/10.1094/PHYTO-12-10-0338

Overexpression of the sterol 14α-demethylase gene (MgCYP51) in Mycosphaerella graminicola isolates confers a novel azole fungicide sensitivity phenotype.

A - Papers appearing in refereed journals

Cools, H. J., Bayon, C., Atkins, S., Lucas, J. A. and Fraaije, B. A. 2012. Overexpression of the sterol 14α-demethylase gene (MgCYP51) in Mycosphaerella graminicola isolates confers a novel azole fungicide sensitivity phenotype. Pest Management Science. 68 (7), pp. 1034-1040. https://doi.org/10.1002/ps.3263

Controlling annual weeds in cereals by deploying crop rotation at the landscape scale: Avena sterilis as an example

A - Papers appearing in refereed journals

Gonzalez-Diaz, L., Van Den Berg, F., Van Den Bosch, F. and Gonzalez-Andujar, J. L. 2012. Controlling annual weeds in cereals by deploying crop rotation at the landscape scale: Avena sterilis as an example. Ecological Applications. 22 (3), pp. 982-992. https://doi.org/10.1890/11-1079.1

Genetic basis of control of Rynchosporium secalis infection and symptom expression in barley

A - Papers appearing in refereed journals

Looseley, M. E., Newton, A. C., Atkins, S. D., Fitt, B. D. L., Fraaije, B. A., Thomas, W. T. B., Keith, R., Macaulay, M., Lynott, J. and Harrap, D. 2012. Genetic basis of control of Rynchosporium secalis infection and symptom expression in barley. Euphytica. 184, pp. 47-56. https://doi.org/10.1007/s10681-011-0485-z

Risk assessment studies on succinate dehydrogenase inhibitors, the new weapons in the battle to control Septoria leaf blotch in wheat

A - Papers appearing in refereed journals

Fraaije, B. A., Bayon, C., Atkins, S., Cools, H. J., Lucas, J. A. and Fraaije, M. W. 2012. Risk assessment studies on succinate dehydrogenase inhibitors, the new weapons in the battle to control Septoria leaf blotch in wheat. Molecular Plant Pathology. 13 (3), pp. 263-275. https://doi.org/10.1111/j.1364-3703.2011.00746.x

Resistance to azole fungicides in Mycosphaerella graminicola: mechanisms and management

B - Book chapters etc edited externally

Cools, H. J. and Fraaije, B. A. 2012. Resistance to azole fungicides in Mycosphaerella graminicola: mechanisms and management. in: Thind, T. S. (ed.) Fungicide resistance in crop protection: risk and management CABI International, Wallingford, Oxon (CABI). pp. 64-77

Development of QoI resistance in Ramularia collo-cygni populations

C1 - Edited contributions to conferences/learned societies

Fountaine, J. M., Burnett, F. J. and Fraaije, B. A. 2011. Development of QoI resistance in Ramularia collo-cygni populations. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 199-202

Molecular mechanisms of altered triazole sensitivity in Rhynchosporium secalis

C1 - Edited contributions to conferences/learned societies

Hawkins, N. J., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2011. Molecular mechanisms of altered triazole sensitivity in Rhynchosporium secalis. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschwieg. pp. 129-134

The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals

C1 - Edited contributions to conferences/learned societies

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2011. The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 413-416

Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase variants resistant to azole fungicides

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Parker, J. E., Kelly, D. E., Lucas, J. A., Kelly, S. L. and Fraaije, B. A. 2011. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase variants resistant to azole fungicides. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 123-128

A stochastic optimization method to estimate the spatial distribution of a pathogen from a sample

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Irey, M. S., Luo, W. and Van Den Bosch, F. 2011. A stochastic optimization method to estimate the spatial distribution of a pathogen from a sample. Phytopathology. 101 (10), pp. 1184-1190. https://doi.org/10.1094/PHYTO-11-10-0311

Interactions in a host plant-virus-vector-parasitoid system: modelling the consequences for virus transmission and disease dynamics

A - Papers appearing in refereed journals

Jeger, M. J., Chen, Z., Powell, G., Hodge, S. and Van Den Bosch, F. 2011. Interactions in a host plant-virus-vector-parasitoid system: modelling the consequences for virus transmission and disease dynamics. Virus Research. 159, pp. 183-193. https://doi.org/10.1016/j.virusres.2011.04.027

Modelling virus- and host-limitation in vectored plant disease epidemics

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Madden, L. V. 2011. Modelling virus- and host-limitation in vectored plant disease epidemics. Virus Research. 159, pp. 215-222. https://doi.org/10.1016/j.virusres.2011.05.012

Delaying selection for fungicide insensitivity by mixing fungicides at a low and high risk of resistance development: a modeling analysis

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D. and Van Den Bosch, F. 2011. Delaying selection for fungicide insensitivity by mixing fungicides at a low and high risk of resistance development: a modeling analysis. Phytopathology. 101, pp. 1224-1233. https://doi.org/10.1094/PHYTO-10-10-0290

The dose rate debate: does the risk of fungicide resistance increase or decrease with dose?

A - Papers appearing in refereed journals

Van Den Bosch, F., Paveley, N., Shaw, M., Hobbelen, P. and Oliver, R. 2011. The dose rate debate: does the risk of fungicide resistance increase or decrease with dose? Plant Pathology. 60 (4), pp. 597-606. https://doi.org/10.1111/j.1365-3059.2011.02439.x

Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola

A - Papers appearing in refereed journals

Mullins, J. G. L., Parker, J. E., Cools, H. J., Togawa, R. C., Lucas, J. A., Fraaije, B. A., Kelly, D. E. and Kelly, S. L. 2011. Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola. PLOS ONE. 6, p. e20973. https://doi.org/10.1371/journal.pone.0020973

Spatial sampling to detect an invasive pathogen outside of an eradication zone

A - Papers appearing in refereed journals

Demon, I., Cunniffe, N. J., Marchant, B. P., Gilligan, C. A. and Van Den Bosch, F. 2011. Spatial sampling to detect an invasive pathogen outside of an eradication zone. Phytopathology. 101 (6), pp. 725-731. https://doi.org/10.1094/PHYTO-05-09-0120

Impact of recently emerged sterol 14alpha-demethylase (CYP51) variants of Mycosphaerella graminicola on azole fungicide sensitivity

A - Papers appearing in refereed journals

Cools, H. J., Mullins, J. G. L., Fraaije, B. A., Parker, J. E., Kelly, D. E., Lucas, J. A. and Kelly, S. L. 2011. Impact of recently emerged sterol 14alpha-demethylase (CYP51) variants of Mycosphaerella graminicola on azole fungicide sensitivity. Applied and Environmental Microbiology. 77, pp. 3830-3837. https://doi.org/10.1128/AEM.00027-11

Derivation and testing of a model to predict selection for fungicide resistance

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2011. Derivation and testing of a model to predict selection for fungicide resistance. Plant Pathology. 60 (2), pp. 304-313. https://doi.org/10.1111/j.1365-3059.2010.02380.x

Periodic host absence can select for higher or lower parasite transmission rates

A - Papers appearing in refereed journals

Van Den Berg, F., Bacaer, N., Metz, J. A. J., Lannou, C. and Van Den Bosch, F. 2011. Periodic host absence can select for higher or lower parasite transmission rates. Evolutionary Ecology. 25, pp. 121-137. https://doi.org/10.1007/s10682-010-9387-0

Mechanism of binding of prothioconazole to Mycosphaerella graminicola CYP51 differs from that of other azole antifungals

A - Papers appearing in refereed journals

Parker, J. E., Warrilow, A. G. S., Cools, H. J., Martel, C. M., Nes, W. D., Fraaije, B. A., Lucas, J. A., Kelly, D. E. and Kelly, S. L. 2011. Mechanism of binding of prothioconazole to Mycosphaerella graminicola CYP51 differs from that of other azole antifungals. Applied and Environmental Microbiology. 77, pp. 1460-1465. https://doi.org/10.1128/AEM.01332-10

The use of a CYP51C gene based on PCR-RFLP assay for simultaneous detection and identification of Fusarium avenaceum and F. tricinctum in wheat

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Atkins, S. L. and Fraaije, B. A. 2011. The use of a CYP51C gene based on PCR-RFLP assay for simultaneous detection and identification of Fusarium avenaceum and F. tricinctum in wheat. International Journal of Food Microbiology. 145, pp. 370-374. https://doi.org/10.1016/j.ijfoodmicro.2011.01.011

Impacts of changing air composition on severity of arable crop disease epidemics

A - Papers appearing in refereed journals

Fitt, B. D. L., Fraaije, B. A., Chandramohan, P. and Shaw, M. W. 2011. Impacts of changing air composition on severity of arable crop disease epidemics. Plant Pathology. 60 (1), pp. 44-53. https://doi.org/10.1111/j.1365-3059.2010.02413.x

Periodicity in Host Availability Does Not Account for Evolutionary Branching as Observed in Many Plant Pathogens: An Application to Gaeumannomyces graminis var. tritici (take-all)

A - Papers appearing in refereed journals

Van Den Berg, F., Gilligan, C. A., Bailey, D. J. and Van Den Bosch, F. 2010. Periodicity in Host Availability Does Not Account for Evolutionary Branching as Observed in Many Plant Pathogens: An Application to Gaeumannomyces graminis var. tritici (take-all). Phytopathology. 100 (11), pp. 1169-1175. https://doi.org/10.1094/PHYTO-10-09-0282

Investigating altered triazole sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. D., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2010. Investigating altered triazole sensitivity in Rhynchosporium secalis. American Phytopathological Society (APS).

The CYP51C gene, a novel marker for phylogenetic analysis of Fusarium species

C2 - Non-edited contributions to conferences

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a novel marker for phylogenetic analysis of Fusarium species.

Succinate dehydrogenase inhibitor resistance risk assessment studies on Mycosphaerella graminicola the causal agent of septoria leaf blotch

C2 - Non-edited contributions to conferences

Bayon, C., Fraaije, M. W., Cools, H. J., Rogers, S. L., Lucas, J. A. and Fraaije, B. A. 2010. Succinate dehydrogenase inhibitor resistance risk assessment studies on Mycosphaerella graminicola the causal agent of septoria leaf blotch.

The usefulness of mixtures of a single-site and a multi-site fungicide as resistance management strategy

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2010. The usefulness of mixtures of a single-site and a multi-site fungicide as resistance management strategy.

Derivation and validation of a model to predict selection for fungicide resistance

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2010. Derivation and validation of a model to predict selection for fungicide resistance.

The CYP51C gene, a reliable marker to resolve interspecific phylogenetic relationships within the Fusarium species complex and a novel target for species-specific PCR

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Loza-Reyes, E., Atkins, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a reliable marker to resolve interspecific phylogenetic relationships within the Fusarium species complex and a novel target for species-specific PCR. International Journal of Food Microbiology. 144, pp. 301-309. https://doi.org/10.1016/j.ijfoodmicro.2010.10.013

Optimal weed management in crop rotations: incorporating economics is crucial

A - Papers appearing in refereed journals

Van Den Berg, F., Gilligan, C. A., Gerdessen, J. C., Gregoire, L. A. H. and Van Den Bosch, F. 2010. Optimal weed management in crop rotations: incorporating economics is crucial. Weed Research. 50 (5), pp. 413-424. https://doi.org/10.1111/j.1365-3180.2010.00787.x

Prothioconazole binds to Mycosphaerella graminicola CYP51 by a different mechanism compared to other azole antifungals

C2 - Non-edited contributions to conferences

Parker, J. E., Warrilow, A., Cools, H. J., Martel, C. M., Nes, W. D., Fraaije, B. A., Lucas, J. A., Kelly, D. E. and Kelly, S. L. 2010. Prothioconazole binds to Mycosphaerella graminicola CYP51 by a different mechanism compared to other azole antifungals. Abstracts 10th International Symposium on Cytochrome P450 Biodiversity and Biotechnology, Woods Hole, 3-7 October 2010 .

CYP51 paralogues and azole fungicide sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J., Sierotzki, H., Shaw, M. and Fraaije, B. A. 2010. CYP51 paralogues and azole fungicide sensitivity in Rhynchosporium secalis. Abstracts 10th International Symposium on Cytochrome P450 Biodiversity and Biotechnology, Woods Hole, 3-7 October 2010 .

Some consequences of using the Horsfall-Barratt scale for hypothesis testing

A - Papers appearing in refereed journals

Bock, C. H., Gottwald, T. R., Parker, P. E., Ferrandino, F., Welham, S. J., Van Den Bosch, F. and Parnell, S. 2010. Some consequences of using the Horsfall-Barratt scale for hypothesis testing. Phytopathology. 100 (10), pp. 1030-1041. https://doi.org/10.1094/PHYTO-08-09-0220

The effect of landscape pattern on the optimal eradication zone of an invading epidemic

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Gilligan, C. A., Cunniffe, N. J. and Van Den Bosch, F. 2010. The effect of landscape pattern on the optimal eradication zone of an invading epidemic. Phytopathology. 100 (7), pp. 638-644. https://doi.org/10.1094/PHYTO-100-7-0638

Molecular mechanisms of altered fungicide sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. D., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2010. Molecular mechanisms of altered fungicide sensitivity in Rhynchosporium secalis. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 50

Effects of DMI fungicides on selection of CYP51 variants in UK populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A., Rogers, S., Bayon, C., Cools, H. J. and Lucas, J. A. 2010. Effects of DMI fungicides on selection of CYP51 variants in UK populations of Mycosphaerella graminicola. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 84

Development of QO1 resistance in Ramularia collocygni populations

C2 - Non-edited contributions to conferences

Fountaine, J. M., Burnett, F. J. and Fraaije, B. A. 2010. Development of QO1 resistance in Ramularia collocygni populations. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 136

The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals

C2 - Non-edited contributions to conferences

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 196

Heterologous expression of mutated eburicol 14alpha-demethylase (CYP51) proteins of Mycosphaerella graminicola to assess effects on azole fungicide sensitivity and intrinsic protein function

A - Papers appearing in refereed journals

Cools, H. J., Parker, J. E., Kelly, D. E., Lucas, J. A., Fraaije, B. A. and Kelly, S. L. 2010. Heterologous expression of mutated eburicol 14alpha-demethylase (CYP51) proteins of Mycosphaerella graminicola to assess effects on azole fungicide sensitivity and intrinsic protein function. Applied and Environmental Microbiology. 76, pp. 2866-2872. https://doi.org/10.1128/AEM.02158-09

Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Parker, J. E., Motteram, J., Kelly, D. E., Lucas, J. A., Rudd, J. J., Kelly, S. L. and Fraaije, B. A. 2010. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 .

The role of seeds and airborne inoculum in the initiation of leaf blotch (Rhynchosporium secalis) epidemics in winter barley

A - Papers appearing in refereed journals

Fountaine, J. M., Shaw, M. W., Ward, E. and Fraaije, B. A. 2010. The role of seeds and airborne inoculum in the initiation of leaf blotch (Rhynchosporium secalis) epidemics in winter barley. Plant Pathology. 59 (2), pp. 330-337. https://doi.org/10.1111/j.1365-3059.2009.02213.x

Rynchosporium secalis: a historical perspective

C2 - Non-edited contributions to conferences

Atkins, S. D., King, K. M., Fraaije, B. A. and Newton, A. C. 2010. Rynchosporium secalis: a historical perspective. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 103-108

The epidemiological importance of asymptomatic infection of winter barley by Rhynchosporium secalis and its consequences for crop protection and breeding

C2 - Non-edited contributions to conferences

Atkins, S. D., Fitt, B. D. L., Fraaije, B. A., Harvey, S., Lynott, J. and Newton, A. C. 2010. The epidemiological importance of asymptomatic infection of winter barley by Rhynchosporium secalis and its consequences for crop protection and breeding. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 81-86

Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats

A - Papers appearing in refereed journals

Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009

Discontinuous host growth and the evolution of plant pathogens

C2 - Non-edited contributions to conferences

Van Den Berg, F. and Van Den Bosch, F. 2009. Discontinuous host growth and the evolution of plant pathogens. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Theoretical evaluation of pyramided and sequential deployment of resistance genes using a yield-related measure of durability of cultivar resistance

C2 - Non-edited contributions to conferences

Demon, I. and Van Den Bosch, F. 2009. Theoretical evaluation of pyramided and sequential deployment of resistance genes using a yield-related measure of durability of cultivar resistance. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Project summary for EU Cordis

C2 - Non-edited contributions to conferences

Evans, N., Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F., Demon, I. and Gladders, P. 2009. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Project summary for EU Cordis. pp. 4pp

Estimating the spatial distribution of a plant disease epidemic from a sample

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T., Irey, M. and Van Den Bosch, F. 2009. Estimating the spatial distribution of a plant disease epidemic from a sample. Abstracts 10th International Epidemiology Workshop, Geneva, New York, 7-12 June 2009 .

Optimal strategies for the eradication of Asiatic citrus canker in heterogeneous host landscapes

A - Papers appearing in refereed journals

Parnell, S. R., Gottwald, T. R., Van Den Bosch, F. and Gilligan, C. A. 2009. Optimal strategies for the eradication of Asiatic citrus canker in heterogeneous host landscapes. Phytopathology. 99 (12), pp. 1370-1376. https://doi.org/10.1094/PHYTO-99-12-1370

A numerical optimization method to estimate the spatial distribution of an epidemic

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T. R. and Van Den Bosch, F. 2009. A numerical optimization method to estimate the spatial distribution of an epidemic. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Some consequences of using the Horsfall-Barratt scale for estimating disease severity compared to nearest percent estimation

C2 - Non-edited contributions to conferences

Bock, C. H., Gottwald, T. R., Parker, P. E., Ferrandino, F., Welham, S. J., Van Den Bosch, F. and Parnell, S. R. 2009. Some consequences of using the Horsfall-Barratt scale for estimating disease severity compared to nearest percent estimation. Abstracts 10th International Epidemiological Workshop, Geneva, New York, 8-12 June 2009 .

Evaluation of a predictive model for Mycosphaerella graminicola for economic and environmental benefits

A - Papers appearing in refereed journals

Te Beest, D. E., Shaw, M. W., Paveley, N. D. and Van Den Bosch, F. 2009. Evaluation of a predictive model for Mycosphaerella graminicola for economic and environmental benefits. Plant Pathology. 58 (6), pp. 1001-1009. https://doi.org/10.1111/j.1365-3059.2009.02142.x

Periodic host absence and the evolution of plant pathogens

C2 - Non-edited contributions to conferences

Van Den Berg, F., Bacaer, N., Metz, J. A. J., Lannou, C. and Van Den Bosch, F. 2009. Periodic host absence and the evolution of plant pathogens. Abstracts Mathematical Models in Ecology and Evolution, Bristol, 10-11 September 2009 . pp. 40

The Horsfall-Barratt scale and severity estimates of citrus canker

A - Papers appearing in refereed journals

Bock, C. H., Gottwald, T. R., Parker, P. E., Cook, A. Z., Ferrandino, F., Parnell, S. and Van Den Bosch, F. 2009. The Horsfall-Barratt scale and severity estimates of citrus canker. European Journal of Plant Pathology. 125, pp. 23-38. https://doi.org/10.1007/s10658-009-9455-x

Sterol content analysis suggests altered eburicol 14alpha-demethylase (CYP51) activity in isolates of Mycosphaerella graminicola adapted to azole fungicides

A - Papers appearing in refereed journals

Bean, T. P., Cools, H. J., Lucas, J. A., Hawkins, N. D., Ward, J. L., Shaw, M. W. and Fraaije, B. A. 2009. Sterol content analysis suggests altered eburicol 14alpha-demethylase (CYP51) activity in isolates of Mycosphaerella graminicola adapted to azole fungicides. FEMS Microbiology Letters. 296, pp. 266-273. https://doi.org/10.1111/j.1574-6968.2009.01645.x

Impact of proquinazid on appressorial development of the barley powdery mildew fungus Blumeria graminis f.sp hordei

A - Papers appearing in refereed journals

Gilbert, S. R., Cools, H. J., Fraaije, B. A., Bailey, A. M. and Lucas, J. A. 2009. Impact of proquinazid on appressorial development of the barley powdery mildew fungus Blumeria graminis f.sp hordei. Pesticide Biochemistry and Physiology. 94, pp. 127-132. https://doi.org/10.1016/j.pestbp.2009.04.011

The effect of transmission route on plant virus epidemic development and disease control

A - Papers appearing in refereed journals

Jeger, M. J., Madden, L. V. and Van Den Bosch, F. 2009. The effect of transmission route on plant virus epidemic development and disease control. Journal of Theoretical Biology. 258, pp. 198-207. https://doi.org/10.1016/j.jtbi.2009.01.012

The presence of generalist plant pathogens might not explain the long-term coexistence of plant species

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2009. The presence of generalist plant pathogens might not explain the long-term coexistence of plant species. Journal of Theoretical Biology. 257, pp. 446-453. https://doi.org/10.1016/j.jtbi.2008.11.020

A model for the optimal control of citrus canker disease (Xanthomonas axonopodis pv. citri) in a mixed-host landscape

C2 - Non-edited contributions to conferences

Parnell, S. R., Van Den Bosch, F. and Gottwald, T. R. 2008. A model for the optimal control of citrus canker disease (Xanthomonas axonopodis pv. citri) in a mixed-host landscape. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859608008083

Construction of maps estimating plant disease distribution: an epidemiological simulation approach

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T. R. and Van Den Bosch, F. 2008. Construction of maps estimating plant disease distribution: an epidemiological simulation approach.

Understanding fungicide mixtures to control Rhynchosporium in barley and minimise resistance shifts. HGCA Project Report No. 436

D1 - Technical reports: non-confidential

Oxley, S. J. P., Burnett, F., Hunter, E,. A., Fraaije, B. A., Cooke, L. R., Mercer, P. C. and Gilchrist, A. 2008. Understanding fungicide mixtures to control Rhynchosporium in barley and minimise resistance shifts. HGCA Project Report No. 436. Home Grown Cereals Authority (HGCA) London.

The final straw: crop archives and the recent history of cereal pathosystems

C1 - Edited contributions to conferences/learned societies

Lucas, J. A. and Fraaije, B. A. 2008. The final straw: crop archives and the recent history of cereal pathosystems. Jellis, G. and Edwards, C. (ed.) Cereal pathosystems: papers from BSPP Presidential Meeting, London, 16-17 December 2008 . Home Grown Cereals Authority (HGCA) London. pp. 103-115

Adaptation of Mycosphaerella graminicola populations to azole fungicides in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Cools, H. J., Motteram, J., Gilbert, S. R., Kim, S-H. and Lucas, J. A. 2008. Adaptation of Mycosphaerella graminicola populations to azole fungicides in the UK. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds V: Proceedings 15th International Reinhardsbrunn Symposium on Modern Fungicides and Antifungal Compounds, 2007 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 121-127

Re-contructing evolution of fungicide resistance and disease dynamics of cereal pathogens from crop archives

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2008. Re-contructing evolution of fungicide resistance and disease dynamics of cereal pathogens from crop archives.

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Final report on EU contract

D1 - Technical reports: non-confidential

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Demon, I., Gladders, P. and Other External Partners 2008. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Final report on EU contract.

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Fourth interim annual report on EU contract

D1 - Technical reports: non-confidential

Evans, N., Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F., Demon, I., Gladders, P. and Other External Partners 2008. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Fourth interim annual report on EU contract.

Testing of fungicide activity enhancers using Septoria leaf blotch as model. Confidential report to industrial sponsor

D1 - Technical reports: non-confidential

Bean, T. P. and Fraaije, B. A. 2008. Testing of fungicide activity enhancers using Septoria leaf blotch as model. Confidential report to industrial sponsor.

Expression of genes encoding efflux proteins in Mycosphaerella graminicola isolates with sensitive or reduced triazole sensitivity phenotypes

C1 - Edited contributions to conferences/learned societies

Bean, T. P., Cools, H. J., Lucas, J. A. and Fraaije, B. A. 2008. Expression of genes encoding efflux proteins in Mycosphaerella graminicola isolates with sensitive or reduced triazole sensitivity phenotypes. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds V: Proceedings 15th International Reinhardsbrunn Symposium on Modern Fungicides and Antifungal Compounds, 2007 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 93-99

Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis

A - Papers appearing in refereed journals

Van Den Berg, F., Van Den Bosch, F., Powers, S. J. and Shaw, M. W. 2008. Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis. Plant Pathology. 57 (6), pp. 1009-1016. https://doi.org/10.1111/j.1365-3059.2008.01865.x

Asymptomatic infection of winter and spring barley by Rhynchosporium secalis: effects and implications for epidemiology and host resistance

C2 - Non-edited contributions to conferences

Atkins, S. D., Stonard, J. F., Fraaije, B. A., Lucas, J. A., Fitt, B. D. L. and Newton, A. C. 2008. Asymptomatic infection of winter and spring barley by Rhynchosporium secalis: effects and implications for epidemiology and host resistance. Abstracts 10th International Barley Genetics Symposium (IBGS), Alexandria, 5-10 April 2008 .

The dynamics of Rynchosporium secalis in winter and spring barley and the role of inoculum sources

C2 - Non-edited contributions to conferences

Atkins, S. D., Fraaije, B. A., Lucas, J. A. and Fitt, B. D. L. 2008. The dynamics of Rynchosporium secalis in winter and spring barley and the role of inoculum sources.

Quantitative measurements of CYP51 alterations in populations of Mycosphaerella graminicola using pyrosequencing

C2 - Non-edited contributions to conferences

Motteram, J., Cools, H. J., Gilbert, S. and Fraaije, B. A. 2008. Quantitative measurements of CYP51 alterations in populations of Mycosphaerella graminicola using pyrosequencing.

Dispersal of airborne spores from plant pahtogenic fungi in cereals

C2 - Non-edited contributions to conferences

Havis, N., Fraaije, B. A. and Oxley, S. 2008. Dispersal of airborne spores from plant pahtogenic fungi in cereals.

Confidential report to Makhteshim Agan (UK) Ltd

D1 - Technical reports: non-confidential

Fraaije, B. A. 2008. Confidential report to Makhteshim Agan (UK) Ltd.

Demethylation inhibitor resistance in cereal pathogens and consequences of resistance management

C2 - Non-edited contributions to conferences

Fraaije, B. A., Cools, H. J., Motteram, J. and Lucas, J. A. 2008. Demethylation inhibitor resistance in cereal pathogens and consequences of resistance management.

Characterisation of mechanisms correlated with reduced azole sensitivity in Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Bean, T. P. and Lucas, J. A. 2008. Characterisation of mechanisms correlated with reduced azole sensitivity in Mycosphaerella graminicola.

Impact of mutations in the CYP51 gene of Mycosphaerella graminicola on azole fungicide sensitivity and intrinsic protein function

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Fernandez-Ortuno, D., Bean, T. P. and Lucas, J. A. 2008. Impact of mutations in the CYP51 gene of Mycosphaerella graminicola on azole fungicide sensitivity and intrinsic protein function. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Fungicide application and the minimisation of risk

C2 - Non-edited contributions to conferences

Van Den Bosch, F. and Te Beest, D. 2008. Fungicide application and the minimisation of risk.

Evolutionary epidemiology of plant viruses

C2 - Non-edited contributions to conferences

Van Den Bosch, F. 2008. Evolutionary epidemiology of plant viruses.

Construction of maps estimating plant disease distribution: an epidemiological simulation approach

C2 - Non-edited contributions to conferences

Parnell, S., Gottwald, T. R. and Van Den Bosch, F. 2008. Construction of maps estimating plant disease distribution: an epidemiological simulation approach. Abstracts ICPP 2008 9th International Congress of Plant Pathology: Healthy and Safe Food for Everybody, Torino, 24-29 August 2008 .

Long-term dynamics in wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Shaw, M. W., Bearchell, S. J., Fitt, B. D. L. and Fraaije, B. A. 2008. Long-term dynamics in wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola.

Changes in fungicide sensitivity and relative species abundance in Oculimaculata yallundae and O. acuformis populations (eyespot disease of cereals) in Western Europe

A - Papers appearing in refereed journals

Parnell, S., Gilligan, C. A., Lucas, J. A., Bock, C. H. and Van Den Bosch, F. 2008. Changes in fungicide sensitivity and relative species abundance in Oculimaculata yallundae and O. acuformis populations (eyespot disease of cereals) in Western Europe. Plant Pathology. 57 (3), pp. 509-517. https://doi.org/10.1111/j.1365-3059.2007.01786.x

Epidemiological models for invasion and persistence of pathogens

A - Papers appearing in refereed journals

Gilligan, C. A. and Van Den Bosch, F. 2008. Epidemiological models for invasion and persistence of pathogens. Annual Review of Phytopathology. 46, pp. 385-418. https://doi.org/10.1146/annurev.phyto.45.062806.094357

Controlling Septoria: can azole fungicides be relied upon?

G - Articles in popular magazines and other technical publications

Fraaije, B. A., Cools, H. J., Clark, B. and Lucas, J. A. 2008. Controlling Septoria: can azole fungicides be relied upon? RRA Newsletter. 26, p. 3.

Models of fungicide resistance dynamics

A - Papers appearing in refereed journals

Van Den Bosch, F. and Gilligan, C. A. 2008. Models of fungicide resistance dynamics. Annual Review of Phytopathology. 46, pp. 123-147. https://doi.org/10.1146/annurev.phyto.011108.135838

Disease-weather relationships for powdery mildew and yellow rust on winter wheat

A - Papers appearing in refereed journals

Te Beest, D. E., Paveley, N. D., Shaw, M. W. and Van Den Bosch, F. 2008. Disease-weather relationships for powdery mildew and yellow rust on winter wheat. Phytopathology. 98 (5), pp. 609-617. https://doi.org/10.1094/PHYTO-98-5-0609

Are azole fungicides losing ground against Septoria wheat disease? Resistance mechanisms in Mycosphaerella graminicola

A - Papers appearing in refereed journals

Cools, H. J. and Fraaije, B. A. 2008. Are azole fungicides losing ground against Septoria wheat disease? Resistance mechanisms in Mycosphaerella graminicola. Pest Management Science. 64 (7), pp. 681-684. https://doi.org/10.1002/ps.1568

The basic reproduction number of plant pathogens: matrix approaches to complex dynamics

A - Papers appearing in refereed journals

Van Den Bosch, F., Mcroberts, N., Van Den Berg, F. and Madden, L. V. 2008. The basic reproduction number of plant pathogens: matrix approaches to complex dynamics. Phytopathology. 98 (2), pp. 239-249. https://doi.org/10.1094/PHYTO-98-2-0239

Long-term relationships between environment and abundance of wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola

A - Papers appearing in refereed journals

Shaw, M. W., Bearchell, S. J., Fitt, B. D. L. and Fraaije, B. A. 2008. Long-term relationships between environment and abundance of wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola. New Phytologist. 177 (1), pp. 229-238. https://doi.org/10.1111/j.1469-8137.2007.02236.x

Epidemics and Crop Yield

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Epidemics and Crop Yield. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 353-388

Decision Making in the Practice of Plant Disease Management

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Decision Making in the Practice of Plant Disease Management. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 319-351

Estimating Plant Disease by Sampling

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Estimating Plant Disease by Sampling. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 279-318

Spatial Aspects of Epidemics III Patterns of Plant Disease

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Spatial Aspects of Epidemics III Patterns of Plant Disease. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 235-278

Spatial Aspects of Epidemic II A Theory of Spatio-Temporal Disease Dynamics

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Spatial Aspects of Epidemic II A Theory of Spatio-Temporal Disease Dynamics. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 211-233

Spatial Aspects of Epidemic I Pathogen Dispersal and Disease Gradients

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Spatial Aspects of Epidemic I Pathogen Dispersal and Disease Gradients. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 173-209

Temporal Analysis III Advanced Topics

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Temporal Analysis III Advanced Topics. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 145-171

Temporal Analysis II The Components of Disease

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Temporal Analysis II The Components of Disease. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 117-143

Temporal Analysis I Quantifying and Comparing Epidemics

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Temporal Analysis I Quantifying and Comparing Epidemics. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 63-116

Introduction to modelling in edpidemiology

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Introduction to modelling in edpidemiology. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 33-61

Measuring Plant Diseases

B - Book chapters etc edited externally

Madden, L. V., Hughes, G. and Van Den Bosch, F. 2007. Measuring Plant Diseases. in: The Study of Plant Disease Epidemics American Phytopathological Society (APS). pp. 11-31

The Study of Plant Disease Epidemics

E - Books edited/written by staff member, alone/with others

Madden, L. V., Hughes, G and Van Den Bosch, F. 2007. The Study of Plant Disease Epidemics.

Molecular mechanisms associated with altered azole sensitivity in Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Bean, T. P., Motteram, J., Gilbert, S. R. and Fraaije, B. A. 2007. Molecular mechanisms associated with altered azole sensitivity in Mycosphaerella graminicola. Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 406-407

Evolution of fungicide resistance in UK populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2007. Evolution of fungicide resistance in UK populations of Mycosphaerella graminicola. Abstracts Resistance 2007, Harpenden, 16-18 April 2007 .

The elasticity of the epidemic growth rate to observed weather patterns with an application to yellow rust

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2007. The elasticity of the epidemic growth rate to observed weather patterns with an application to yellow rust. Phytopathology. 97, pp. 1512-1518. https://doi.org/10.1094/PHYTO-97-11-1512

Effects of a strobilurin-based spray programme on disease control, green leaf area, yield and development of fungicide-resistance in Mycosphaerella graminicola in Northern Ireland

A - Papers appearing in refereed journals

Mccartney, C., Mercer, P. C., Cooke, L. R. and Fraaije, B. A. 2007. Effects of a strobilurin-based spray programme on disease control, green leaf area, yield and development of fungicide-resistance in Mycosphaerella graminicola in Northern Ireland. Crop Protection. 26, pp. 1272-1280. https://doi.org/10.1016/j.cropro.2006.10.027

Introgression of resistance genes between populations: a model study of insecticide resistance in Bemisia tabaci

A - Papers appearing in refereed journals

Demon, I. M., Haccou, P. and Van Den Bosch, F. 2007. Introgression of resistance genes between populations: a model study of insecticide resistance in Bemisia tabaci. Theoretical Population Biology. 72, pp. 292-304. https://doi.org/10.1016/j.tpb.2007.06.005

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays

A - Papers appearing in refereed journals

Cools, H. J., Fraaije, B. A., Bean, T. P., Antoniw, J. F. and Lucas, J. A. 2007. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays. Molecular Plant Pathology. 8 (5), pp. 639-651. https://doi.org/10.1111/J.1364-3703.2007.00411.X

Economic and environmental validation of disease risk prediction models

C2 - Non-edited contributions to conferences

Te Beest, D. and Van Den Bosch, F. 2007. Economic and environmental validation of disease risk prediction models.

Dynamics of fungicide resistant alleles in field populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2007. Dynamics of fungicide resistant alleles in field populations of Mycosphaerella graminicola.

Sterol content analysis of Mycosphaerella graminicola isolates with reduced sensitivity to triazole fungicides

C2 - Non-edited contributions to conferences

Bean, T. P., Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2007. Sterol content analysis of Mycosphaerella graminicola isolates with reduced sensitivity to triazole fungicides.

Evolution within Bemisia tabaci and associated begomoviruses: a strategic modelling approach

B - Book chapters etc edited externally

Van Den Bosch, F., Jeger, M. and Demon, I. 2007. Evolution within Bemisia tabaci and associated begomoviruses: a strategic modelling approach. in: Sweetmore, A., Silverside, P. and Kimmins, F. (ed.) Perspectives on pests II: achievements of research under UK Department for International Development Crop Protection Programme 2000-2005 Natural Resources International, London. pp. 188-190

A novel substitution 1381V in the sterol 14alpha-demethylase (CYP51) of Mycosphaerella graminicola is differentially selected by azole fungicides

A - Papers appearing in refereed journals

Fraaije, B. A., Cools, H. J., Kim, S-H., Motteram, J., Clark, W. S. and Lucas, J. A. 2007. A novel substitution 1381V in the sterol 14alpha-demethylase (CYP51) of Mycosphaerella graminicola is differentially selected by azole fungicides. Molecular Plant Pathology. 8 (3), pp. 245-254. https://doi.org/10.1111/j.1364-3703.2007.00388.X

Apical leaf necrosis and leaf nitrogen dynamics in diseased leaves: a model study

A - Papers appearing in refereed journals

Van Den Berg, F., Robert, C., Shaw, M. W. and Van Den Bosch, F. 2007. Apical leaf necrosis and leaf nitrogen dynamics in diseased leaves: a model study. Plant Pathology. 56 (3), pp. 424-436. https://doi.org/10.1111/j.1365-3059.2007.01565.x

Development and validation of a model to describe the progress of phoma stem canker epidemics in England and France

C1 - Edited contributions to conferences/learned societies

Evans, N., Pirie, E. J., Fitt, B. D. L., Papastamati, K., Gladders, P., Pinochet, X., Penaud, A. and Van Den Bosch, F. 2007. Development and validation of a model to describe the progress of phoma stem canker epidemics in England and France. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 161-164

The SECURE project - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Huang, Y-J., Eckert, M., Pietravalle, S., Demon, I., Papastamati, K., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Fudal, I., Gout, L., Brun, H., Andrivon, D., Bousset, L., Besnard, A. L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Irzykowski, W., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I. and Renard, M. 2007. The SECURE project - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 187-189

Application of real-time and multiplex polymerase chain reaction assays to study leaf blotch epidemics in barley

A - Papers appearing in refereed journals

Fountaine, J. M., Shaw, M. W., Napier, B., Ward, E. and Fraaije, B. A. 2007. Application of real-time and multiplex polymerase chain reaction assays to study leaf blotch epidemics in barley. Phytopathology. 97, pp. 297-303. https://doi.org/10.1094/PHYTO-97-0297

Disease control and its selection for damaging plant virus strains in vegetatively propagated staple food crops: a theoretical assessment

A - Papers appearing in refereed journals

Van Den Bosch, F., Jeger, M. J. and Gilligan, C. A. 2007. Disease control and its selection for damaging plant virus strains in vegetatively propagated staple food crops: a theoretical assessment. Proceedings of the Royal Society of London Series B Biological Sciences. 274, pp. 11-18. https://doi.org/10.1098/rspb.2006.3715

The sensitivity of the epidemic growth rate to weather variables, with an application to yellow rust on wheat

A - Papers appearing in refereed journals

Papastamati, K. and Van Den Bosch, F. 2007. The sensitivity of the epidemic growth rate to weather variables, with an application to yellow rust on wheat. Phytopathology. 97 (2), pp. 202-210. https://doi.org/10.1094/PHYTO-97-2-0202

Effects of Strobilurin fungicides on control of Septoria tritici blotch, green leaf area and yield of winter wheat in the light of fungicide resistance in Northern Ireland

C1 - Edited contributions to conferences/learned societies

Mccartney, C., Mercer, P. C., Cooke, L. R. and Fraaije, B. A. 2006. Effects of Strobilurin fungicides on control of Septoria tritici blotch, green leaf area and yield of winter wheat in the light of fungicide resistance in Northern Ireland. Fungicide Resistance: Are We Wiining the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 71

Methods to detect fungicide resistance: from broth dilution to real-time PCR

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A. and Cools, H. J. 2006. Methods to detect fungicide resistance: from broth dilution to real-time PCR. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 11-15

DMI resistance: an overview

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2006. DMI resistance: an overview. Abstracts 11th IUPAC International Congress of Pesticide Chemistry, Kobe, 6-11 August 2006 . pp. 60

Fungicide resistance management strategies, using barley mildew as a model

C1 - Edited contributions to conferences/learned societies

Burnett, F. J., Clark, W. S., Fraaije, B. A. and Lucas, J. A. 2006. Fungicide resistance management strategies, using barley mildew as a model. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 83-89

Integration of molecular diagnostics and air sampling to study plant pathogens

C2 - Non-edited contributions to conferences

West, J. S., Fraaije, B. A., Motteram, J., Rogers, S. L., Lacey, M. E. and Lucas, J. A. 2006. Integration of molecular diagnostics and air sampling to study plant pathogens. Abstracts 8th International Congress on Aerobiology, Neuchatel, 21-25 August 2006 . pp. 260

SECURE - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance (QLK5-CT-2002-01813)

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Huang, Y-J., Pietravalle, S., Eckert, M., Papastamati, K., Demon, I., Karolewski, Z., Rouxel, T., Balesdent, M-H., Fudal, I., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I., Meyer, J. and Renard, M. 2006. SECURE - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance (QLK5-CT-2002-01813).

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 11th IUPAC International Congress of Pesticide Chemistry, Kobe, 6-11 August 2006 . pp. 140

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F., Bean, T. P. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 . pp. 28

Evolution of azole resistance mechanisms in UK populations of Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J. and Fraaije, B. A. 2006. Evolution of azole resistance mechanisms in UK populations of Mycosphaerella graminicola. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 21-27

In planta expression analysis in Mycosphaerella graminicola of genes encoding efflux proteins

C2 - Non-edited contributions to conferences

Bean, T. P., Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2006. In planta expression analysis in Mycosphaerella graminicola of genes encoding efflux proteins. Asbtracts APS CPS MSA Joint Meeting on Plant Pathology at the Biological Crossroads, Quebec, 29 July-2 August 2006 . pp. 11

Application of quantitative real-time PCR to monitor Rynchosporium secalis in barley cultivars

C2 - Non-edited contributions to conferences

Atkins, S. D., Fountaine, J. M., Fitt, B. D. L. and Fraaije, B. A. 2006. Application of quantitative real-time PCR to monitor Rynchosporium secalis in barley cultivars. Abstracts International Workshop on Barley Leaf Blights, Edmonton, 23-27 July 2006 .

Formulating an early-warning model for Septoria tritici

C2 - Non-edited contributions to conferences

Te Beest, D. E., Pietravalle, S., Shaw, M. W. and Van Den Bosch, F. 2006. Formulating an early-warning model for Septoria tritici. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859606006290

Establishing the risk of introgression of insecticide resistance for Bemisia tabaci

C2 - Non-edited contributions to conferences

Demon, I., Van Den Bosch, F. and Jeger, M. 2006. Establishing the risk of introgression of insecticide resistance for Bemisia tabaci. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859606006290

Begomovirus evolution and disease management

A - Papers appearing in refereed journals

Seal, S. E., Jeger, M. J. and Van Den Bosch, F. 2006. Begomovirus evolution and disease management. Advances in Virus Research. 67, pp. 297-316. https://doi.org/10.1016/S0065-3527(06)67008-5

Evolutionary epidemiology of plant virus disease

A - Papers appearing in refereed journals

Jeger, M. J., Seal, S. E. and Van Den Bosch, F. 2006. Evolutionary epidemiology of plant virus disease. Advances in Virus Research. 67, pp. 163-203. https://doi.org/10.1016/S0065-3527(06)67005-X

Impact of changes in the target P450 CYP51 enzyme associated with altered triazole-sensitivity in fungal pathogens of cereal crops

A - Papers appearing in refereed journals

Cools, H. J., Fraaije, B. A., Kim, S. H. and Lucas, J. A. 2006. Impact of changes in the target P450 CYP51 enzyme associated with altered triazole-sensitivity in fungal pathogens of cereal crops. Biochemical Society Transactions. 34 (6), pp. 1219-1222. https://doi.org/10.1042/BST0341219

Transient population dynamics in periodic matrix models: methodology and effects of cyclic permutations

A - Papers appearing in refereed journals

Mertens, S. K., Yearsley, J. M., Van Den Bosch, F. and Gilligan, C. A. 2006. Transient population dynamics in periodic matrix models: methodology and effects of cyclic permutations. Ecology. 87 (9), pp. 2338-2348. https://doi.org/10.1890/0012-9658(2006)87[2338:TPDIPM]2.0.CO;2

Coexistence of related pathogen species on arable crops in space and time

A - Papers appearing in refereed journals

Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F. and West, J. S. 2006. Coexistence of related pathogen species on arable crops in space and time. Annual Review of Phytopathology. 44, pp. 163-182. https://doi.org/10.1146/annurev.phyto.44.070505.143417

Host resistance and the evolutionary response of plant viruses

A - Papers appearing in refereed journals

Van Den Bosch, F., Akudibilah, G., Seal, S. and Jeger, M. 2006. Host resistance and the evolutionary response of plant viruses. Journal of Applied Ecology. 43 (3), pp. 506-516. https://doi.org/10.1111/j.1365-2664.2006.01159.x

Exploring appressorial formation in the cereal biotroph powdery mildew

C2 - Non-edited contributions to conferences

Gilbert, S. R., Fraaije, B. A., Bailey, A., Cools, H. J. and Lucas, J. A. 2006. Exploring appressorial formation in the cereal biotroph powdery mildew. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 165

Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains

A - Papers appearing in refereed journals

Parnell, S., Van Den Bosch, F. and Gilligan, C. A. 2006. Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains. Phytopathology. 96 (5), pp. 549-555. https://doi.org/10.1094/PHYTO-96-0549

Pest and disease management system for supporting winter oilseed rape decisions (PASSWORD) - vaildation phase (HGCA Project Report No. 390)

D1 - Technical reports: non-confidential

Gladders, P., Dyer, C., Fitt, B. D. L., Evans, N., Van Den Bosch, F., Baierl, A., Turner, J., Walters, K., Northing, P., Sutherland, K., Oxley, S., Foster, V., Ellerton, D., Myers, N., Selley, A., Ashworth, M. and Hall, B. 2006. Pest and disease management system for supporting winter oilseed rape decisions (PASSWORD) - vaildation phase (HGCA Project Report No. 390). London Home Grown Cereals Authority (HGCA).

Development and field testing of fungicide anti-resistance strategies, with particular reference to strobilurin QoI group of fungicides. (HGCA Project Report No. 392)

D1 - Technical reports: non-confidential

Fraaije, B. A., Burnett, F. J., Clark, W. S. and Lucas, J. A. 2006. Development and field testing of fungicide anti-resistance strategies, with particular reference to strobilurin QoI group of fungicides. (HGCA Project Report No. 392). Home Grown Cereals Authority (HGCA) London.

Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control

A - Papers appearing in refereed journals

Seal, S. E., Van Den Bosch, F. and Jeger, M. J. 2006. Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical reviews in plant sciences. 25, pp. 23-46. https://doi.org/10.1080/07352680500365257

Durability of resistance and cost of virulence

A - Papers appearing in refereed journals

Pietravalle, S., Lamarie, S. and Van Den Bosch, F. 2006. Durability of resistance and cost of virulence. European Journal of Plant Pathology. 114, pp. 107-116. https://doi.org/10.1007/s10658-005-3479-7

Testing an experimental fungicide for in vitro activity against Mycosphaerella graminicola (anamorph Septoria tritici ) (Confidential report for Cropsolution Inc)

D1 - Technical reports: non-confidential

Lucas, J. A., Bean, T., Cools, H. J. and Fraaije, B. A. 2005. Testing an experimental fungicide for in vitro activity against Mycosphaerella graminicola (anamorph Septoria tritici ) (Confidential report for Cropsolution Inc).

Exploring appressorial formation in the biotrophic cereal fungus powdery mildew

C2 - Non-edited contributions to conferences

Gilbert, S., Cools, H. J., Fraaije, B. A., Bailey, A. and Lucas, J. A. 2005. Exploring appressorial formation in the biotrophic cereal fungus powdery mildew. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 177

The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola

A - Papers appearing in refereed journals

Fraaije, B. A., Cools, H. J., Fountaine, J., Lovell, D. J., Motteram, J., West, J. S. and Lucas, J. A. 2005. The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola. Phytopathology. 95 (8), pp. 933-941. https://doi.org/10.1094/PHYTO-95-0933

QoI resistance in Mycosphaerella graminicola : role of inoculum, effect of different anti-resistance strategies and current status in the UK

C2 - Non-edited contributions to conferences

Fraaije, B. A., Burnett, F., Clark, W., Motteram, J. and Lucas, J. A. 2005. QoI resistance in Mycosphaerella graminicola : role of inoculum, effect of different anti-resistance strategies and current status in the UK. Abstracts American Phytopathological Society Annual Meeting, Austin, 30 July-3 August 2005 .

Resistance development to QoI inhibitors in populations of Mycosphaerella graminicola in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Burnett, F. J., Clark, W. S., Motteram, J. and Lucas, J. A. 2005. Resistance development to QoI inhibitors in populations of Mycosphaerella graminicola in the UK. Dehne, H-W., Lyr, H., Russell, P. E., Kuck, K. H. and Gisi, U. (ed.) Modern Fungicides and Antifungal Compounds IV: Proceedings of the 14th International Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2004 . British Crop Protection Council (BCPC). pp. 63-71

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

C2 - Non-edited contributions to conferences

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Rouxel, T., Balesdent, M., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Happstadius, I., Podlesna, A., Renard, M. and Karolewski, Z. 2005. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Abstracts 9th International Workshop on Plant Disease Epidemiology: Facing Challenges of the 21st Century, Landerneau, 11-15 April 2005 . pp. 28

Molecular examination of Septoria tritici isolates with reduced sensitivities to triazoles

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2005. Molecular examination of Septoria tritici isolates with reduced sensitivities to triazoles. Dehne, H-W., Lyr, H., Russell, P. E., Kuck, K. H. and Gisi, U. (ed.) Modern Fungicides and Antifungal Compounds IV: Proceedings of the 14th International Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2004 . British Crop Protection Council (BCPC). pp. 103-114

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Third interim annual report for period 1 September 2004-31 August 2005 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2005. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Third interim annual report for period 1 September 2004-31 August 2005 on EU contract QLK5-CT-2002-01813.

Molecular mechanisms correlated with changes in triazole sensitivity in isolates of Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2005. Molecular mechanisms correlated with changes in triazole sensitivity in isolates of Mycosphaerella graminicola. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 267-274

Use of risk prediction models for integrated control of diseases of oilseed rape in the UK

C1 - Edited contributions to conferences/learned societies

Evans, N., Welham, S. J., Baierl, A., Antoniw, J. F., Papastamati, K., Van Den Bosch, F., Fitt, B. D. L., Gladders, P., Turner, J. A. and Elcock, S. 2005. Use of risk prediction models for integrated control of diseases of oilseed rape in the UK. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 649-654

Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Keon, J. P. R., Antoniw, J. F. and Lucas, J. A. 2005. Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

Factors affecting co-existence of related pathogen species on arable crops

C2 - Non-edited contributions to conferences

West, J. S., Huang, Y-J., Van Den Bosch, F. and Fitt, B. D. L. 2005. Factors affecting co-existence of related pathogen species on arable crops. Abstracts 15th Biennial Australasian Plant Pathology Society Conference, Geelong, Australia, 26-29 September 2005 . pp. 92

Small-scale fungicide spray heterogeneity and the coexistence of resistant and sensitive pathogen strains

A - Papers appearing in refereed journals

Parnell, S., Gilligan, C. A. and Van Den Bosch, F. 2005. Small-scale fungicide spray heterogeneity and the coexistence of resistant and sensitive pathogen strains. Phytopathology. 95 (6), pp. 632-639. https://doi.org/10.1094/PHYTO-95-0632

Which traits promote persistence of feral GM crops? Part 2: implications of metapopulation structure

A - Papers appearing in refereed journals

Claessen, D., Gilligan, C. A. and Van Den Bosch, F. 2005. Which traits promote persistence of feral GM crops? Part 2: implications of metapopulation structure. Oikos. 110 (1), pp. 30-42. https://doi.org/10.1111/j.0030-1299.2005.13668.x

Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity

A - Papers appearing in refereed journals

Claessen, D., Gilligan, C. A., Lutman, P. J. W. and Van Den Bosch, F. 2005. Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity. Oikos. 110 (1), pp. 20-29. https://doi.org/10.1111/j.0030-1299.2005.13667.x

Integration of spore trapping with molecular techniques to enhance epidemiological studies

C2 - Non-edited contributions to conferences

West, J. S., McCartney, H. A., Fountaine, J., Fraaije, B. A., Lee, I. K. and Lucas, J. A. 2005. Integration of spore trapping with molecular techniques to enhance epidemiological studies. Abstracts 9th International Workshop on Plant Disease Epidemiology, Rennes, 10-15 April 2005 . pp. 65

Durability of resistance and optimum deployment strategies for resistant cultivars

C2 - Non-edited contributions to conferences

Pietravalle, S., Evans, N. and Van Den Bosch, F. 2005. Durability of resistance and optimum deployment strategies for resistant cultivars. Abstracts 9th International Workshop on Plant Disease Epidemiology, Rennes, 10-15 April 2005 . pp. 41

Wheat archive links long-term fungal pathogen population dynamics to air pollution

A - Papers appearing in refereed journals

Bearchell, S. J., Fraaije, B. A., Shaw, M. W. and Fitt, B. D. L. 2005. Wheat archive links long-term fungal pathogen population dynamics to air pollution. Proceedings of the National Academy of Sciences. 102 (15), pp. 5438-5442. https://doi.org/10.1073/pnas.0501596102

Strobilurin resistance in Septoria tritici in the UK. (HGCA topic sheet No. 69)

G - Articles in popular magazines and other technical publications

Clark, W. and Fraaije, B. A. 2005. Strobilurin resistance in Septoria tritici in the UK. (HGCA topic sheet No. 69).

Adaptation to the cost of resistance: a model of compensation, recombination and selection in a haploid organism

A - Papers appearing in refereed journals

Wijngaarden, P. J., Van Den Bosch, F., Jeger, M. J. and Hoekstra, R. F. 2005. Adaptation to the cost of resistance: a model of compensation, recombination and selection in a haploid organism. Proceedings of the Royal Society of London Series B Biological Sciences. 272, pp. 85-89.

Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops

B - Book chapters etc edited externally

Gilligan, C. A., Claessen, D. and Van Den Bosch, F. 2005. Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops. in: Wesseler, J. H. H. (ed.) Environmental costs and benefits of transgenic crops Springer, Heidelberg. pp. 143-161

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Second interim report for period 1 September 2003-31 August 2004 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2004. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Second interim report for period 1 September 2003-31 August 2004 on EU contract QLK5-CT-2002-01813.

The influence of spray heterogeneity on the dynamics of fungicide resistance

C2 - Non-edited contributions to conferences

Parnell, S. R., Gilligan, C. A. and Van Den Bosch, F. 2004. The influence of spray heterogeneity on the dynamics of fungicide resistance. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 13-14

Durability of resistance: a modelling approach

C1 - Edited contributions to conferences/learned societies

Pietravalle, S., Van Den Bosch, F. and Evans, N. 2004. Durability of resistance: a modelling approach.

SECURE - possibilities for durable resistance to stem canker?

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I. and Renard, M. 2004. SECURE - possibilities for durable resistance to stem canker?

Development of a decision support system for phoma and light leaf spot in winter oilseed rape ('PASSWORD' Project) (HGCA Project Report No. 357)

D1 - Technical reports: non-confidential

Gladders, P., Dyer, C., Fitt, B. D. L., Evans, N., Van Den Bosch, F., Steed, J. M., Baierl, A., Turner, J., Walters, K., Northing, P., Sutherland, K., Campbell, S., Ellerton, D., Selley, A., Hall, B., Naylor, D. and Parker, C. 2004. Development of a decision support system for phoma and light leaf spot in winter oilseed rape ('PASSWORD' Project) (HGCA Project Report No. 357). Home Grown Cereals Authority (HGCA) London.

Molecular mechanisms conferring reduced sensitivities to triazoles in UK isolates of Septoria tritici

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2004. Molecular mechanisms conferring reduced sensitivities to triazoles in UK isolates of Septoria tritici.

Evolution of QoI resistance in populations of Mycosphaerella graminocola

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Lucas, J. A. 2004. Evolution of QoI resistance in populations of Mycosphaerella graminocola.

A model for the evolution of pathogen-induced leaf shedding

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2004. A model for the evolution of pathogen-induced leaf shedding. Oikos. 107 (1), pp. 36-49. https://doi.org/10.1111/j.0030-1299.2004.13238.x

Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations

A - Papers appearing in refereed journals

Gudelj, I., Van Den Bosch, F. and Gilligan, C. A. 2004. Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations. Proceedings of the Royal Society B: Biological Sciences. 271 (1553), pp. 2187-2194. https://doi.org/10.1098/rspb.2004.2837

The effect of crop and pest management practices on the evolution within Bemisia tabaci

C2 - Non-edited contributions to conferences

Demon, I., Jeger, M. and Van Den Bosch, F. 2004. The effect of crop and pest management practices on the evolution within Bemisia tabaci. Abstracts 2nd European Whitefly Symposium, Cavtat, Croatia, 5-9 October 2004 . pp. 43

The effect of spatial distributions of mycoparasites on biocontrol efficacy: a modelling approach

A - Papers appearing in refereed journals

Jeger, M. J., Termorshuizen, A. J., Nagtzaam, M. P. M. and Van Den Bosch, F. 2004. The effect of spatial distributions of mycoparasites on biocontrol efficacy: a modelling approach. Biocontrol Science and Technology. 14, pp. 359-373.

Plant pathogen diagnostics: immunological and nucleic acid-based approaches

A - Papers appearing in refereed journals

Ward, E., Foster, S. J., Fraaije, B. A. and McCartney, H. A. 2004. Plant pathogen diagnostics: immunological and nucleic acid-based approaches. Annals of Applied Biology - AAB. 145 (1), pp. 1-16. https://doi.org/10.1111/j.1744-7348.2004.tb00354.x

Modelling leaf wetness duration during the rosette stage of oilseed rape

A - Papers appearing in refereed journals

Papastamati, K., McCartney, H. A. and Van Den Bosch, F. 2004. Modelling leaf wetness duration during the rosette stage of oilseed rape. Agricultural and Forest Meteorology. 123 (1-2), pp. 69-78. https://doi.org/10.1016/j.agrformet.2003.10.003

Evolution of sibling fungal plant pathogens in relation to host specialization

A - Papers appearing in refereed journals

Gudelj, I., Fitt, B. D. L. and Van Den Bosch, F. 2004. Evolution of sibling fungal plant pathogens in relation to host specialization. Phytopathology. 94 (7), pp. 789-795. https://doi.org/10.1094/PHYTO.2004.94.7.789

Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions

A - Papers appearing in refereed journals

Lovell, D. J., Hunter, T., Powers, S. J., Parker, S. R. and Van Den Bosch, F. 2004. Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions. Plant Pathology. 53 (2), pp. 170-181. https://doi.org/10.1111/j.1365-3059.2004.00983.x

Epidemiology of insect-transmitted plant viruses: modelling disease dynamics and control interventions

A - Papers appearing in refereed journals

Jeger, M. J., Holt, J., Van Den Bosch, F. and Madden, L. V. 2004. Epidemiology of insect-transmitted plant viruses: modelling disease dynamics and control interventions. Physiological Entomology. 29 (3), pp. 291-304. https://doi.org/10.1111/j.0307-6962.2004.00394.x

Double-jump migration and diffusive instability

A - Papers appearing in refereed journals

Huang, Y., Diekmann, O. and Van Den Bosch, F. 2004. Double-jump migration and diffusive instability. Bulletin Of Mathematical Biology. 66, pp. 487-504.

Strategies optimales pour le deploiement de varietes resistantes: modelisation analytique de la durabilite de la resistance

C2 - Non-edited contributions to conferences

Pietravalle, S. and Van Den Bosch, F. 2004. Strategies optimales pour le deploiement de varietes resistantes: modelisation analytique de la durabilite de la resistance. Abstracts Journees Jean Chevaugeon 5e Rencontres de Phytopathologie/Mycologie, Aussois, 18-22 January 2004 .

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). First interim annual report for period 1 September 2002-31 August 2003 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2003. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). First interim annual report for period 1 September 2002-31 August 2003 on EU contract QLK5-CT-2002-01813.

A rational basis for the design of wheat canopy ideotypes

C1 - Edited contributions to conferences/learned societies

Parker, S. R., Berry, P. M., Paveley, N. D., Van Den Bosch, F. and Lovell, D. J. 2003. A rational basis for the design of wheat canopy ideotypes. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 1101-1106

Co-existence between Leptosphaeria maculans and L. biglibosa in the UK

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Huang, Y-J., Gudelj, I. and Van Den Bosch, F. 2003. Co-existence between Leptosphaeria maculans and L. biglibosa in the UK.

Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis

G - Articles in popular magazines and other technical publications

Lovell, D. J., Parker, S. R., Baldwin, S. and Fraaije, B. A. 2003. Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis. Plant Health Progress. July 2003, p. http://www.plantmanagementnetwork.org/.

QoI resistance development in populations of cereal pathogens in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Lucas, J. A., Clark, W. S. and Burnett, F. J. 2003. QoI resistance development in populations of cereal pathogens in the UK. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 689-694

Modelling stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus )

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F. and Jeger, M. J. 2003. Modelling stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus ).

A mechanistic model for stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus )

C2 - Non-edited contributions to conferences

Papastamati, K., Jeger, M. and Van Den Bosch, F. 2003. A mechanistic model for stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus ). Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1160-1162

An environmental physics driven model for leaf wetness duration on winter oilseed rape

C1 - Edited contributions to conferences/learned societies

Papastamati, K., McCartney, H. A. and Van Den Bosch, F. 2003. An environmental physics driven model for leaf wetness duration on winter oilseed rape. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1163-1165

Effects of initial conditions on weed seedbank dynamics in crop rotations

C1 - Edited contributions to conferences/learned societies

Mertens, S. K., Gilligan, C. A. and Van Den Bosch, F. 2003. Effects of initial conditions on weed seedbank dynamics in crop rotations. Seedbanks: Determination, Dynamics and Management. Aspects of Applied Biology 69 . pp. 223-228

The evolution of pathogen-induced leaf shed

C2 - Non-edited contributions to conferences

Van Den Berg, F. and Van Den Bosch, F. 2003. The evolution of pathogen-induced leaf shed. Abstracts Alcala 2nd International Conference on Mathematical Ecology, Madrid, 5-9 September 2003 . pp. 10-Ber-a/b

Which traits promote persistence of feral GM crops?

C2 - Non-edited contributions to conferences

Claessen, D., Gilligan, C. A., Lutman, P. J. W. and Van Den Bosch, F. 2003. Which traits promote persistence of feral GM crops? Cambridge University Press (CUP).

Weed populations and crop rotations: exploring dynamics of a structured periodic system

C2 - Non-edited contributions to conferences

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2003. Weed populations and crop rotations: exploring dynamics of a structured periodic system. Cambridge University Press (CUP).

Measures of durability of resistance

A - Papers appearing in refereed journals

Van Den Bosch, F. and Gilligan, C. A. 2003. Measures of durability of resistance. Phytopathology. 93 (5), pp. 616-625. https://doi.org/10.1094/PHYTO.2003.93.5.616

Modeling of relationships between weather and Septoria tritici epidemics on winter wheat: a critical approach

A - Papers appearing in refereed journals

Pietravalle, S., Shaw, M. W., Parker, S. R. and Van Den Bosch, F. 2003. Modeling of relationships between weather and Septoria tritici epidemics on winter wheat: a critical approach. Phytopathology. 93 (10), pp. 1329-1339. https://doi.org/10.1094/PHYTO.2003.93.10.1329

The dynamics of an eco-epidemic model with biological control

A - Papers appearing in refereed journals

Xiao, Y. and Van Den Bosch, F. 2003. The dynamics of an eco-epidemic model with biological control. Ecological Modelling. 168, pp. 203-214.

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I., Meyer, J. and Renard, M. 2003. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 36-38

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

G - Articles in popular magazines and other technical publications

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Rouxel, T., Balesdent, M-H., Brun, H., Andrivon, D., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Happstadius, I., Meyer, J., Karolewski, Z. and Renard, M. 2003. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. GCIRC Bulletin. 19, pp. 40-42.

Interactions between the grasses Phalaris arundinacea, Miscanthus sinensis and Echinochloa crus-galli , and Barley and Cereal yellow dwarf viruses

A - Papers appearing in refereed journals

Lamptey, J. N. L., Plumb, R. T. and Shaw, M. W. 2003. Interactions between the grasses Phalaris arundinacea, Miscanthus sinensis and Echinochloa crus-galli , and Barley and Cereal yellow dwarf viruses. Journal of Phytopathology. 151 (42954), pp. 463-468. https://doi.org/10.1046/j.1439-0434.2003.00752.x

Molecular diagnostics for fungal plant pathogens

A - Papers appearing in refereed journals

McCartney, H. A., Foster, S. J., Fraaije, B. A. and Ward, E. 2003. Molecular diagnostics for fungal plant pathogens. Pest Management Science. 59 (2), pp. 129-142. https://doi.org/10.1002/ps.575

Resistance in wheat powdery mildew to strobilurin fungicides: effects of dose rate, frequency and mixtures (Final report to Defra on project PT0226)

D1 - Technical reports: non-confidential

Fraaije, B. A. 2002. Resistance in wheat powdery mildew to strobilurin fungicides: effects of dose rate, frequency and mixtures (Final report to Defra on project PT0226).

A rational basis for the design of wheat canopy ideotypes

C2 - Non-edited contributions to conferences

Berry, P. M., Parker, S. R., Van Den Bosch, F. and Paveley, N. D. 2002. A rational basis for the design of wheat canopy ideotypes. Abstracts AAB Meeting Genotype-Phenotype: Narrowing the Gap, Cirencester, 16-18 December 2002 .

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2002. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Cambridge University Press (CUP).

Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Lovell, D. J. and Baldwin, S. 2002. Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape.

Towards an early warning system for winter wheat disease severity

C1 - Edited contributions to conferences/learned societies

Pietravalle, S., Van Den Bosch, F., Shaw, M. W. and Parker, S. R. 2002. Towards an early warning system for winter wheat disease severity. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 897-902

Weed populations and crop rotations: exploring dynamics of a structured periodic system

A - Papers appearing in refereed journals

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2002. Weed populations and crop rotations: exploring dynamics of a structured periodic system. Ecological Applications. 12 (4), pp. 1125-1141. https://doi.org/10.2307/3061041

Dynamical behavior for a stage-structured SIR infectious disease model

A - Papers appearing in refereed journals

Xiao, Y., Chen, L. and Van Den Bosch, F. 2002. Dynamical behavior for a stage-structured SIR infectious disease model. Nonlinear Analysis-Real World Applications. 3, pp. 175-190.

Following the dynamics of strobilurin resistance in Blumeria graminis f.sp. tritici using quantitative allele-specific real-time PCR measurements with the fluorescent dye SYBR Green 1

A - Papers appearing in refereed journals

Fraaije, B. A., Butters, J. A., Coelho, J. M., Jones, D. R. and Hollomon, D. W. 2002. Following the dynamics of strobilurin resistance in Blumeria graminis f.sp. tritici using quantitative allele-specific real-time PCR measurements with the fluorescent dye SYBR Green 1. Plant Pathology. 51 (1), pp. 45-54. https://doi.org/10.1046/j.0032-0862.2001.00650.x

Quasi-steady state approximation to a fungal growth model

A - Papers appearing in refereed journals

Lamour, A., Van Den Bosch, F., Termorshuizen, A. J. and Jeger, M. J. 2002. Quasi-steady state approximation to a fungal growth model. IMA Journal of Mathematics Applied in Medicine and Biology. 19, pp. 163-183.

Modelling plant virus epidemics in a plantation-nursery system

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Dutmer, M. Y. 2002. Modelling plant virus epidemics in a plantation-nursery system. IMA Journal of Mathematics Applied in Medicine and Biology. 19, pp. 75-94.

Identification and transmission of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum ) in Sri Lanka

A - Papers appearing in refereed journals

De Silva, D. P. P., Jones, P. and Shaw, M. W. 2002. Identification and transmission of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum ) in Sri Lanka. Plant Pathology. 51 (5), pp. 537-545. https://doi.org/10.1046/j.0032-0862.2002.00757.x

Window Pane, la redecouverte d'une ancienne methode: quel avenir? Etude de l'exemple de la Septoriose (Mycosphaerella graminocola ) du ble d'hiver

C2 - Non-edited contributions to conferences

Pietravalle, S., Van Den Bosch, F. and Shaw, M. 2002. Window Pane, la redecouverte d'une ancienne methode: quel avenir? Etude de l'exemple de la Septoriose (Mycosphaerella graminocola ) du ble d'hiver. Abstracts Journees Jean Chevaugeon, 4iemes Rencontres de Phytopathologie/Mycologie, Aussois, 13-17 March 2002 .

Simulation of vertical spread of plant diseases in a crop canopy by stem extension and splash dispersal

A - Papers appearing in refereed journals

Pielaat, A., Van Den Bosch, F., Fitt, B. D. L. and Jeger, M. J. 2002. Simulation of vertical spread of plant diseases in a crop canopy by stem extension and splash dispersal. Ecological Modelling. 151, pp. 195-212.

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

A - Papers appearing in refereed journals

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2002. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Ecological Modelling. 148, pp. 169-189.

Time lags in metapopulation responses to landscape change

B - Book chapters etc edited externally

Nagelkerke, K. C. J., Verboom, J., Van Den Bosch, F. and Van De Wolfshaar, K. 2002. Time lags in metapopulation responses to landscape change. in: Gutzwiller, K. J. (ed.) Applying landscape ecology in biological conservation Springer, New York. pp. 330-354

Weed population dynamics and crop rotations: exploring effects of event sequence in a structured periodic system

C2 - Non-edited contributions to conferences

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2002. Weed population dynamics and crop rotations: exploring effects of event sequence in a structured periodic system. Abstracts 87th Annual Meeting of the Ecological Society of America, Tucson, 4-9 August 2002 . pp. MER-1014-799580

Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000

A - Papers appearing in refereed journals

Bierman, S. M., Fitt, B. D. L., Van Den Bosch, F., Bateman, G. L., Jenkyn, J. F. and Welham, S. J. 2002. Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000. Plant Pathology. 51 (2), pp. 191-201. https://doi.org/10.1046/j.1365-3059.2002.00673.x

Quantitative PCR monitoring of the effect of azoxystrobin treatments on Mycosphaerella graminicola epidemics in the field

A - Papers appearing in refereed journals

Rohel, E. A., Laurent, P., Fraaije, B. A., Cavelier, N. and Hollomon, D. W. 2002. Quantitative PCR monitoring of the effect of azoxystrobin treatments on Mycosphaerella graminicola epidemics in the field. Pest Management Science. 58 (3), pp. 248-254. https://doi.org/10.1002/ps.431

A population-dynamics approach to assess the threat of plant pathogens as biological weapons against annual crops

A - Papers appearing in refereed journals

Madden, L. V. and Van Den Bosch, F. 2002. A population-dynamics approach to assess the threat of plant pathogens as biological weapons against annual crops. Bioscience. 52, pp. 65-74.

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ) in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2001. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ) in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .

Theoretical epidemiology and modeling with practical applications

C2 - Non-edited contributions to conferences

Madden, L. V. and Van Den Bosch, F. 2001. Theoretical epidemiology and modeling with practical applications. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .

Vegetation pattern formation in semi-arid grazing systems

A - Papers appearing in refereed journals

Hillerislambers, R., Rietkerk, M., Van Den Bosch, F., Prins, H. H. T. and De Kroon, H. 2001. Vegetation pattern formation in semi-arid grazing systems. Ecology. 82 (1), pp. 50-61. https://doi.org/10.1890/0012-9658(2001)082[0050:VPFISA]2.0.CO;2

Mathematical conservation ecology: a one-predator-two-prey system as a case study

A - Papers appearing in refereed journals

Grasman, J., Van Den Bosch, F. and Van Herwaarden, O. A. 2001. Mathematical conservation ecology: a one-predator-two-prey system as a case study. Bulletin Of Mathematical Biology. 63, pp. 259-269.

Occurrence and molecular characterization of strobilurin resistance in cucumber powdery mildew and downy mildew

A - Papers appearing in refereed journals

Ishii, H., Fraaije, B. A., Sugiyama, T., Noguchi, K., Nishimura, K., Takeda, T., Amano, T. and Hollomon, D. W. 2001. Occurrence and molecular characterization of strobilurin resistance in cucumber powdery mildew and downy mildew. Phytopathology. 91, pp. 1166-1171. https://doi.org/https://doi.org/10.1094/PHYTO.2001.91.12.1166

PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita) diseases

A - Papers appearing in refereed journals

Fraaije, B. A., Lovell, D. J., Coelho, J. M., Baldwin, S. and Hollomon, D. W. 2001. PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita) diseases. European Journal of Plant Pathology. 107, pp. 905-917. https://doi.org/10.1023/A:1013119206261

Epidemic dynamics and patterns of plant diseases

A - Papers appearing in refereed journals

Segarra, J., Jeger, M. J. and Van Den Bosch, F. 2001. Epidemic dynamics and patterns of plant diseases. Phytopathology. 91 (10), pp. 1001-1010. https://doi.org/10.1094/PHYTO.2001.91.10.1001

Modelling of rain splash trajectories and prediction of rain splash height

A - Papers appearing in refereed journals

Pietravalle, S., Van Den Bosch, F., Welham, S. J., Parker, S. R. and Lovell, D. J. 2001. Modelling of rain splash trajectories and prediction of rain splash height. Agricultural and Forest Meteorology. 109, pp. 171-185. https://doi.org/10.1016/S0168-1923(01)00267-2

Effect of temperature on epidemiological parameters of Puccinia lagenophorae

A - Papers appearing in refereed journals

Kolnaar, R. W. and Van Den Bosch, F. 2001. Effect of temperature on epidemiological parameters of Puccinia lagenophorae. Plant Pathology. 50 (3), pp. 363-370. https://doi.org/10.1046/j.1365-3059.2001.00533.x

Exploring infection of wheat and carbohydrate metabolism in Mycosphaerella graminocola transformants with differentially regulated green fluorescent protein expression

A - Papers appearing in refereed journals

Rohel, E. A., Payne, A. C., Fraaije, B. A. and Hollomon, D. W. 2001. Exploring infection of wheat and carbohydrate metabolism in Mycosphaerella graminocola transformants with differentially regulated green fluorescent protein expression. Molecular Plant-Microbe Interactions - MPMI. 14 (2), pp. 156-163. https://doi.org/10.1094/MPMI.2001.14.2.156

Novel DNA diagnostic technology in plant disease control using Septoria tritici as a model. (HGCA Project Report No. 245)

D1 - Technical reports: non-confidential

Fraaije, B. A. and Hollomon, D. W. 2001. Novel DNA diagnostic technology in plant disease control using Septoria tritici as a model. (HGCA Project Report No. 245). Home Grown Cereals Authority (HGCA) London.

In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Butters, J. A. and Hollomon, D. W. 2000. In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay. Proceedings AFPP 6th International Conference on Plant Diseases, Tours, 6-8 December 2000 . pp. 779-786

In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Butters, J. A. and Hollomon, D. W. 2000. In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2000 . pp. 401-406

Spread of organisms: can travelling and dispersive waves be distinguished?

A - Papers appearing in refereed journals

Frantzen, J. and Van Den Bosch, F. 2000. Spread of organisms: can travelling and dispersive waves be distinguished? Basic and Applied Ecology. 1, pp. 83-91.

A theoretical assessment of the effects of vector-virus transmission mechanism on plant virus epidemics

A - Papers appearing in refereed journals

Madden, L. V., Jeger, M. J. and Van Den Bosch, F. 2000. A theoretical assessment of the effects of vector-virus transmission mechanism on plant virus epidemics. Phytopathology. 90 (6), pp. 576-594. https://doi.org/10.1094/PHYTO.2000.90.6.576

Implementation of results from rain tower experiments into a simulation model for vertical spore distribution

C1 - Edited contributions to conferences/learned societies

Pielaat, A., Van Den Bosch, F., Marshall, D. C. A., Fitt, B. D. L., McCartney, H. A. and Jeger, M. J. 1999. Implementation of results from rain tower experiments into a simulation model for vertical spore distribution. Information Technology for Crop Protection. Aspects of Applied Biology 55 . pp. 15-20

Impact and epidemiology of barley yellow dwarf luteovirus on some biomass crops in the UK

G - Articles in popular magazines and other technical publications

Lamptey, J. N. L., Plumb, R. T. and Shaw, M. W. 1997. Impact and epidemiology of barley yellow dwarf luteovirus on some biomass crops in the UK. Barley Yellow Dwarf Newsletter. 6, pp. 19-20.

Aetiology and control of black pepper (Piper nigrum L.) yellow mottle virus disease

A - Papers appearing in refereed journals

De Silva, D. P. P., Jones, P. and Shaw, M. W. 1996. Aetiology and control of black pepper (Piper nigrum L.) yellow mottle virus disease. Tropical Agricultural Research. 8, pp. 401-411.

The reliability of visual estimates of disease severity on cereal leaves

A - Papers appearing in refereed journals

Parker, S. R., Shaw, M. W. and Royle, D. J. 1995. The reliability of visual estimates of disease severity on cereal leaves. Plant Pathology. 44 (5), pp. 856-864. https://doi.org/10.1111/j.1365-3059.1995.tb02745.x

Barley yellow dwarf luteovirus (BYDV) infection of grasses grown for biomass

C2 - Non-edited contributions to conferences

Lamptey, J. N. L., Plumb, R. T. and Shaw, M. W. 1995. Barley yellow dwarf luteovirus (BYDV) infection of grasses grown for biomass. Abstracts 7th Conference on Virus Diseases of Poaceae in Europe, Versailles, 1995 .

Early development of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape (Brassica napus) in relation to temperature and leaf wetness

A - Papers appearing in refereed journals

Figueroa, L., Fitt, B. D. L., Welham, S. J., Shaw, M. W. and McCartney, H. A. 1995. Early development of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape (Brassica napus) in relation to temperature and leaf wetness. Plant Pathology. 44 (4), pp. 641-654. https://doi.org/10.1111/j.1365-3059.1995.tb01688.x

Predicting early development of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape

C1 - Edited contributions to conferences/learned societies

Gladders, P., Fitt, B. D. L., Figueroa, L., McCartney, H. A., Shaw, M. W. and Welham, S. J. 1995. Predicting early development of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape.

Effects of temperature on the development of light leaf spot (Pyrenopeziza brassicae) on oilseed rape (Brassica napus)

A - Papers appearing in refereed journals

Figueroa, L., Fitt, B. D. L., Shaw, M. W., McCartney, H. A. and Welham, S. J. 1995. Effects of temperature on the development of light leaf spot (Pyrenopeziza brassicae) on oilseed rape (Brassica napus). Plant Pathology. 44 (1), pp. 51-62. https://doi.org/10.1111/j.1365-3059.1995.tb02715.x

Effects of previous cropping and fungicide timing on the development of light leaf spot (Pyrenopeziza brassicae ) seed yield and quality of winter oilseed rape (Brassica napus )

A - Papers appearing in refereed journals

Figueroa, L., Shaw, M. W., Fitt, B. D. L., McCartney, H. A. and Welham, S. J. 1994. Effects of previous cropping and fungicide timing on the development of light leaf spot (Pyrenopeziza brassicae ) seed yield and quality of winter oilseed rape (Brassica napus ). Annals of Applied Biology - AAB. 124 (2), pp. 221-239. https://doi.org/10.1111/j.1744-7348.1994.tb04130.x

Methods for detection of early infection by Pyrenopeziza brassicae (light leaf spot) on winter oilseed rape in the UK

C1 - Edited contributions to conferences/learned societies

Figueroa, L., Fitt, B. D. L., Shaw, M. W. and McCartney, H. A. 1993. Methods for detection of early infection by Pyrenopeziza brassicae (light leaf spot) on winter oilseed rape in the UK.

Epidemiology and early detection of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape in the UK

G - Articles in popular magazines and other technical publications

Figueroa, L., Fitt, B. D. L., Shaw, M. W. and McCartney, H. A. 1992. Epidemiology and early detection of light leaf spot (Pyrenopeziza brassicae) on winter oilseed rape in the UK. GCIRC Bulletin. 8, pp. 72-75.

A model of the evolution of polygenically controlled fungicide resistance

A - Papers appearing in refereed journals

Shaw, M. W. 1989. A model of the evolution of polygenically controlled fungicide resistance. Plant Pathology. 38 (1), pp. 44-55. https://doi.org/10.1111/j.1365-3059.1989.tb01426.x

Airborne inoculum as a major source of septoria-tritici (mycosphaerella-graminicola) infections in winter wheat crops in the uk

A - Papers appearing in refereed journals

Shaw, M. W. and Royle, D. J. 1989. Airborne inoculum as a major source of septoria-tritici (mycosphaerella-graminicola) infections in winter wheat crops in the uk. Plant Pathology. 38 (1), pp. 35-43. https://doi.org/10.1111/j.1365-3059.1989.tb01425.x