New developments in identification and quantification of airborne inoculum

West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.

Related outputs

Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis

N - Datasets

Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2024. Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis. Rothamsted Research. https://doi.org/10.23637/rothamsted.99163

Navigating the Fusarium species complex: Host-range plasticity and genome variations

A - Papers appearing in refereed journals

Armer, V., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Navigating the Fusarium species complex: Host-range plasticity and genome variations. Fungal Biology. https://doi.org/10.1016/j.funbio.2024.07.004

A fungal endophyte induces local cell-wall mediated resistance in wheat roots against take-all disease

A - Papers appearing in refereed journals

Chancellor, T., Smith, D. P., Chen, W., Clark, S. J., Venter, E., Halsey, K., Carrera, E., Mcmillan, V. E., Canning, G., Armer, V., Hammond-Kosack, K. E. and Palma-Guerrero, J. 2024. A fungal endophyte induces local cell-wall mediated resistance in wheat roots against take-all disease. Frontiers in Plant Science. 15. https://doi.org/10.3389/fpls.2024.1444271

Phoma stem canker (blackleg) of oilseed rape (canola) and other Brassica crops

A - Papers appearing in refereed journals

West, J. S. and King, K. M. 2024. Phoma stem canker (blackleg) of oilseed rape (canola) and other Brassica crops. Plant Health Cases CABI Reviews. https://doi.org/10.1079/planthealthcases.2024.0007

The trichothecene mycotoxin deoxynivalenol facilitates cell-to-cell invasion during wheat-tissue colonisation by Fusarium graminearum

A - Papers appearing in refereed journals

Armer, V., Urban, M., Ashfield, T., Deeks, M. J. and Hammond-Kosack, K. E. 2024. The trichothecene mycotoxin deoxynivalenol facilitates cell-to-cell invasion during wheat-tissue colonisation by Fusarium graminearum. Molecular Plant Pathology. 25 (6), p. e13485. https://doi.org/10.1111/mpp.13485

MinION sequencing of fungi in Sub-Saharan African air, and a novel LAMP assay for rapid detection of the tropical phytopathogenic genus Lasiodiplodia

A - Papers appearing in refereed journals

King, K. M., Canning, G. and West, J. S. 2024. MinION sequencing of fungi in Sub-Saharan African air, and a novel LAMP assay for rapid detection of the tropical phytopathogenic genus Lasiodiplodia . Pathogens. 13 (4), p. 330. https://doi.org/10.3390/pathogens13040330

Identification and functional characterisation of a locus for target site integration in Fusarium graminearum

A - Papers appearing in refereed journals

Darino, M., Urban, M., Kaur, N., Wood, A. K. M., Smith, D., Grimwade-Mann, M., Beacham, A. and Hammond-Kosack, K. E. 2024. Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology. 11 (2), pp. 1-21. https://doi.org/10.1186/s40694-024-00171-8

Population Genetic Structure of the Rubber Tree Powdery Mildew Pathogen (Erysiphe quercicola) from China

A - Papers appearing in refereed journals

Cao, X., Han, Q., Xiao, Y., He, J., Chuan, X., Jiang, G., West, J. S. and Xu, X. 2024. Population Genetic Structure of the Rubber Tree Powdery Mildew Pathogen (Erysiphe quercicola) from China. Plant Disease. https://doi.org/10.1094/PDIS-03-23-0575-RE

Spray-induced gene silencing as a potential tool to control rubber tree powdery mildew disease

A - Papers appearing in refereed journals

Cao X., Han Q. and West, J. S. 2024. Spray-induced gene silencing as a potential tool to control rubber tree powdery mildew disease. Physiological and Molecular Plant Pathology. 129, p. 102182. https://doi.org/10.1016/j.pmpp.2023.102182

Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape)

A - Papers appearing in refereed journals

King, K. M., Barr, L., Bousquet, L., Glaab, A., Canning, G., Ritchie, F., Kildea, S., Fraaije, B. A. and West, J. S. 2024. Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape). Plant Pathology. pp. 1-16. https://doi.org/10.1111/ppa.13897

Efficient qPCR estimation and discrimination of airborne inoculum of Leptosphaeria maculans and L. biglobosa, the causal organisms of phoma leaf spotting and stem canker of oilseed rape

A - Papers appearing in refereed journals

Kaczmarek, J., West, J. S., King, K. M., Canning, G., Latunde-Dada, A. O., Huang, Y-J., Fitt, B. D. L. and Jedryczka, M. 2024. Efficient qPCR estimation and discrimination of airborne inoculum of Leptosphaeria maculans and L. biglobosa, the causal organisms of phoma leaf spotting and stem canker of oilseed rape. Pest Management Science. 80 (5), pp. 2453-2460. https://doi.org/10.1002/ps.7800

Effective control of Leptosphaeria maculans increases importance of L. biglobosa as a cause of phoma stem canker epidemics on oilseed rape

A - Papers appearing in refereed journals

Huang, Y-J., Sidique, S. N. M., Dewage, C. S. K., Gajula, L. H., Mitrousia, G. K., Qi, A., West, J. S. and Fitt, B. D. L. 2024. Effective control of Leptosphaeria maculans increases importance of L. biglobosa as a cause of phoma stem canker epidemics on oilseed rape. Pest Management Science. 80 (5), pp. 2405-2415. https://doi.org/10.1002/ps.7248

Characterising the Influence of First-Year Wheat Cultivar on Pseudomonas Selection and Function in a Take-All Infected Field

A - Papers appearing in refereed journals

Zadjali, M. A., Rabiey, M., Mcmillan, V. E., Shaw, L. J., Hammond-Kosack, K. E., Malone, J. G., Mauchline, T. H. and Jackson, R. W. 2023. Characterising the Influence of First-Year Wheat Cultivar on Pseudomonas Selection and Function in a Take-All Infected Field. Crops. 3 (3), pp. 195-208. https://doi.org/10.3390/crops3030019

Characterization of Colletotrichum Species Infecting Litchi in Hainan, China

A - Papers appearing in refereed journals

Li, X. C., Xu, H., Li, H., Wang, S., Wang, G., West, J. S. and Wang, J. 2023. Characterization of Colletotrichum Species Infecting Litchi in Hainan, China. Journal of fungi. 9 (11), p. 1042. https://doi.org/10.3390/jof9111042

Insights in disease management - Editorial

A - Papers appearing in refereed journals

West, J. S., Spadaro, D. and Hofte, M. 2023. Insights in disease management - Editorial. Frontiers in Agronomy. 5, p. 1155058. https://doi.org/10.3389/fagro.2023.1155058

Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles

A - Papers appearing in refereed journals

Vicentini, S. N. C., Hawkins, N. J., King, K. M., Moreira, S. I., Custodio, A. A. D. P., Junior, R. P. L., Portalanza, D., Garces-Fiallos, F. R., Krug, L. D., West, J. S., Fraaije, B. A., Junior, W. C. D. J. and Ceresini, P. C. 2023. Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles. Agronomy. 13 (5), p. 1238. https://doi.org/10.3390/agronomy13051238

Temporal population structure of rubber tree powdery mildew pathogen Erysiphe quercicola in Hainan, China.

A - Papers appearing in refereed journals

Cao, X., Xiao, Y., Han, Q., West, J. S. and Daquan, L. 2023. Temporal population structure of rubber tree powdery mildew pathogen Erysiphe quercicola in Hainan, China. Plant Pathology. 72 (7), pp. 1218-1225. https://doi.org/10.1111/ppa.13736

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

A - Papers appearing in refereed journals

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2023. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. BMC Biology. 21, p. 24. https://doi.org/10.1186/s12915-023-01520-6

Indirect Evidence Based on Mating-Type Ratios for the Role of Sexual Reproduction in European and Chinese Populations of Plenodomus biglobosus (Blackleg of Oilseed Rape)

A - Papers appearing in refereed journals

King, K. M., Canning, G., Zhou, K., Liu, Z., Wu, M. and West, J. S. 2023. Indirect Evidence Based on Mating-Type Ratios for the Role of Sexual Reproduction in European and Chinese Populations of Plenodomus biglobosus (Blackleg of Oilseed Rape). Pathogens. 12 (1), p. 3. https://doi.org/10.3390/pathogens12010003

A framework for community curation of interspecies interactions literature

A - Papers appearing in refereed journals

Cuzick, A., Seager, J., Wood, V., Urban, M., Rutherford, K. and Hammond-Kosack, K. E. 2023. A framework for community curation of interspecies interactions literature. eLife. 12, p. e84658. https://doi.org/10.7554/eLife.84658

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

A - Papers appearing in refereed journals

Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. Phytopathology. 112 (11), pp. 49-49.

Spatial characteristics of the fungus powdery mildew (Erysiphe neolycopersici) on tomatoes and its spread in industrial greenhouses

A - Papers appearing in refereed journals

Sokolidi, A., Webster, R., Milne, A. E., Bielik, M., Morley, P., Clarkson, J. P. and West, J. S. 2022. Spatial characteristics of the fungus powdery mildew (Erysiphe neolycopersici) on tomatoes and its spread in industrial greenhouses. Biostatistics. 1 (1), pp. 18-30.

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

N - Datasets

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90

Apoplastic and vascular defences

A - Papers appearing in refereed journals

Darino, M., Kanyuka, K. and Hammond-Kosack, K. E. 2022. Apoplastic and vascular defences. Essays in Biochemistry. 66 (5), pp. 595-605. https://doi.org/10.1042/EBC20220159

Genetic analysis of Colletotrichum siamense populations from different hosts and counties in Hainan, China using microsatellite markers.

A - Papers appearing in refereed journals

Cao, X., Zhang, Q., He, Y., Che, H., Lin, Y., Luo, D., West, J. S. and Xu, X. 2022. Genetic analysis of Colletotrichum siamense populations from different hosts and counties in Hainan, China using microsatellite markers. Plant Disease. https://doi.org/10.1094/PDIS-03-22-0576-RE

Development and characterization of microsatellite markers for the rubber tree powdery mildew pathogen Oidium heveae

A - Papers appearing in refereed journals

Han, Q., He, Y., Che, H., Luo, D., West, J. S. and Cao, X. 2022. Development and characterization of microsatellite markers for the rubber tree powdery mildew pathogen Oidium heveae. European Journal of Plant Pathology. 164, pp. 253-262. https://doi.org/10.1007/s10658-022-02555-1

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

Conference poster

Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. APS AGM - Plant Health 2022. Pittsburgh, Pennsylvania, USA 06 Aug 2022

The potential of fluorescence imaging to distinguish insect pest and non-pest species

A - Papers appearing in refereed journals

Shortall, C. R., Perryman, S. A. M., Halsey, K. and West, J. S. 2022. The potential of fluorescence imaging to distinguish insect pest and non-pest species. Outlooks on Pest Management. 33 (1), pp. 13-16(4). https://doi.org/10.1564/v33_feb_05

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

A - Papers appearing in refereed journals

Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M, Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, A., Fioretto, L. D. R., Davis, P., Silva, N. H. D., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, K. E., Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, J., Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D. and Flicek, P. 2022. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Research. 50 (D1), pp. D996-D1003. https://doi.org/10.1093/nar/gkab1007

Plant Health in a One Health context Special Issue

G - Articles in popular magazines and other technical publications

Oliver R. P. and West, J. S. 2022. Plant Health in a One Health context Special Issue. Plant Pathology. 71 (1), pp. 3-4. https://doi.org/10.1111/ppa.13487

Lack of an Intron in Cytochrome b and Overexpression of Sterol 14 alpha-Demethylase Indicate a Potential Risk for QoI and DMI Resistance Development in Neophysopella spp. on Grapes

A - Papers appearing in refereed journals

Santos, R. F., Amorium, L., Wood, A. K. M., Bibiano, L. B. J. and Fraaije, B. A. 2021. Lack of an Intron in Cytochrome b and Overexpression of Sterol 14 alpha-Demethylase Indicate a Potential Risk for QoI and DMI Resistance Development in Neophysopella spp. on Grapes. Phytopathology. 111 (10), pp. 1726-1734. https://doi.org/10.1094/PHYTO-11-20-0514-R

Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex.

A - Papers appearing in refereed journals

Geiser, D. M., Al-Hatmi, A. M. S., Aoki, T., Arie, T., Balmas, V., Barnes, I., Bergstrom, G. C., Bhattacharyya, M. K., Blomquist, C. L., Bowden, R. L., Brankovics, B., Brown, D. W., Burgess, L. W., Bushley, K., Busman, M., Cano-Lira, J. F., Carrillo, J. D., Chang, H., Chen, C., Chen, W., Chilvers, M., Chulze, S., Coleman, J. J., Cuomo, C. A., De Beer, Z. W., De Hoog, G. S., Del Castillo-Munera, J., Del Ponte, E. M., Dieguez-Uribeondo, J., Di Pietro, A., Edel-Hermann, V., Elmer, W. H., Epstein, L., Eskalen, A., Esposto, M. C., Everts, K. L., Fernandez-Pavía, S. P., Ferreira-Da-Silva, G., Foroud, N. A., Fourie, G., Frandsen, R. J. N., Freeman, S., Freitag, M., Frenkel, O., Fuller, K. K., Gagkaeva, T., Gardiner, D. M., Glenn, A. E., Gold, S. E., Gordon, T. R., Gregory, N. F., Gryzenhout, M., Guarro, J., Gugino, B. K., Gutierrez, S., Hammond-Kosack, K. E., Harris, L. J., Homa, M., Hong, C., Hornok, L., Huang, J., Ilkit, M., Jacobs, A., Jacobs, K., Jiang, C., Del Mar Jimenez-Gasco, M., Kang, S., Kasson, M. T., Kazan, K., Kennell, J. C., Kim, H., Kistler, H. C., Kuldau, G. A., Kulik, T., Kurzai, O., Laraba, I., Laurence, M. H., Lee, T., Lee, Y., Lee, Y., Leslie, J. F., Liew, E. C. Y., Lofton, L. W., Logrieco, A. F., Lopez-Berges, M. S., Luque, A. G., Lysoe, E., Ma, L., Marra, R. E., Martin, F. N., May, S. R., McCormick, S. P., McGee, C., Meis, J. F., Migheli, Q., Nor, N. M. I. M., Monod, M., Moretti, A., Mostert, D., Mule, G., Munaut, F., Munkvold, G. P., Nicholson, P., Nucci, M., O’Donnell, K., Pasquali, M., Pfenning, L. H., Prigitano, A., Proctor, R. H., Ranque, S., Rehner, S. A., Rep, M., Rodriguez-Alvarado, G., Rose, L. J., Roth, M. G., Ruiz-Roldan, C., Saleh, A. A., Salleh, B., Sang, H., Scandiani, M. M., Scauflaire, J., Schmale, D. G. III., Short, D. P. G., Sisic, A., Smith, J. A., Smyth, C. W., Son, H., Spahr, E., Stajich, J. E., Steenkamp, E., Steinberg, C., Subramaniam, R., Suga, H., Summerell, B. A., Susca, A., Swett, C. L., Toomajian, C., Torres-Cruz, T. J., Tortorano, A. M., Urban, M., Vaillancourt, L. J., Vallad, G. E., Van Der Lee, T. A. J., Vanderpool, D., VanDiepeningen, A. D., Vaughan, M. M., Venter, E., Vermeulen, M., Verweij, P. E., Viljoen, A., Waalwijk, C., Wallace, E. C., Walther, G., Wang, J., Ward, T. J., Wickes, B. L., Wiederhold, N. P., Wingfield, M. J., Wood, A. K. M., Xu, J., Yang, X., Yli-Mattila, T., Yun, S., Zakaria, L., Zhang, H., Zhang, N., Zhang, S. X. and Zhang, X. 2021. Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex. Phytopathology. 111 (7), pp. 1064-1079. https://doi.org/10.1094/PHYTO-08-20-0330-LE

Detection of the Phoma pathogens Plenodomus biglobosus subclades ‘brassicae’ and ‘canadensis’ on wasabi, and ‘canadensis’ in Europe

A - Papers appearing in refereed journals

King, K. M. and West, J. S. 2021. Detection of the Phoma pathogens Plenodomus biglobosus subclades ‘brassicae’ and ‘canadensis’ on wasabi, and ‘canadensis’ in Europe. European Journal of Plant Pathology. https://doi.org/10.1007/s10658-021-02428-z

PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions

A - Papers appearing in refereed journals

Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., Martinez, M. C., Pedro, H., Yates, A. D. and Hammond-Kosack, K. E. 2021. PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions. Nucleic Acids Research. 50, pp. D837-D847. https://doi.org/10.1093/nar/gkab1037

Epidemiological studies of pan-azole resistant Aspergillus fumigatus populations sampled during tulip cultivation show clonal expansion with acquisition of multi-fungicide resistance as potential driver

A - Papers appearing in refereed journals

Fraaije, B. A., Atkins, S. L., Santos, R. F., Hanley, S. J., West, J. S. and Lucas, J. 2021. Epidemiological studies of pan-azole resistant Aspergillus fumigatus populations sampled during tulip cultivation show clonal expansion with acquisition of multi-fungicide resistance as potential driver . Microorganisms. 9 (11), p. 2379. https://doi.org/10.3390/microorganisms9112379

Monitoring of Brazilian wheat blast field populations reveals resistance to QoI, DMI, and SDHI fungicides

A - Papers appearing in refereed journals

Vicentini, S. N. C., Casado, P. S., DeCarvalho, G., Moreira, S. I., Dorgian, A. F., Silva, T. C., Silva, A. G., Custodio, A. P. A., Gomes, A. C. S., Maciel, J. L. N., Hawkins, N. J., McDonald, B. A., Fraaije, B. A. and Ceresini, P. C. 2021. Monitoring of Brazilian wheat blast field populations reveals resistance to QoI, DMI, and SDHI fungicides. Plant Pathology. 71 (2), pp. 304-321. https://doi.org/10.1111/ppa.13470

Fungicide resistance management: maximising the effective life of plant protection products

A - Papers appearing in refereed journals

Corkley, I., Fraaije, B. A. and Hawkins, N. J. 2021. Fungicide resistance management: maximising the effective life of plant protection products. Plant Pathology. 00, pp. 1-20. https://doi.org/10.1111/ppa.13467

Identifying aphid resistance in the ancestral wheat Triticum monococcum under field conditions.

A - Papers appearing in refereed journals

Simon, A. L., Caulfield, J. C., Hammond-Kosack, K. E., Field, L. M. and Aradottir, G. I. 2021. Identifying aphid resistance in the ancestral wheat Triticum monococcum under field conditions. Scientific Reports. 11, p. 13495. https://doi.org/10.1038/s41598-021-92883-9

Fungicide resistance status and chemical control options for the brassica pathogen Pyrenopeziza brassicae

A - Papers appearing in refereed journals

King, K. M., Bucur, D. E., Hawkins, N. J., Kaczmarek, A. M., Duan, Y., Kildea, S., West, J. S. and Fraaije, B. A. 2021. Fungicide resistance status and chemical control options for the brassica pathogen Pyrenopeziza brassicae. Plant Pathology. 70 (9), pp. 2086-2103. https://doi.org/10.1111/ppa.13441

Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat

A - Papers appearing in refereed journals

Hammond-Kosack, M., King, R., Kanyuka, K. and Hammond-Kosack, K. E. 2021. Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13672

WAKsing plant immunity, waning diseases

A - Papers appearing in refereed journals

Stephens, C., Hammond-Kosack, K. E. and Kanyuka, K. 2021. WAKsing plant immunity, waning diseases. Journal of Experimental Botany. 73 (1), pp. 22-37. https://doi.org/10.1093/jxb/erab422

The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection

A - Papers appearing in refereed journals

Wood, A. K. M., Panwar, V., Grimwade-Mann, M., Ashfield, T., Hammond-Kosack, K. E. and Kanyuka, K. 2021. The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection. Journal of Experimental Botany. 72 (13), pp. 5010-5023. https://doi.org/10.1093/jxb/erab170

Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus)

A - Papers appearing in refereed journals

Picot, E., Hale, C. C., Hilton, S., Teakle, G. R., Schafer, H., Huang, Y-J., Perryman, S. A. M., West, J. S. and Bending, G. D. 2021. Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus). Frontiers in Sustainable Food Systems. 5 (article), p. 613269. https://doi.org/10.3389/fsufs.2021.613269

Mineral and biological ice-nucleating particles above the South East of the British Isles

A - Papers appearing in refereed journals

Sanchez-Marroquin, A., West, J. S., Burke, I., McQuaid, J. B. and Murray, B. J. 2021. Mineral and biological ice-nucleating particles above the South East of the British Isles. Environmental science : Atmospheres. 1 (4), pp. 176-191. https://doi.org/10.1039/D1EA00003A.

Effects of temperature and leaf age on conidial germination and disease development of powdery mildew on rubber tree

A - Papers appearing in refereed journals

Cao, X., Xu, X., Che, H., West, J. S. and Luo, D. 2021. Effects of temperature and leaf age on conidial germination and disease development of powdery mildew on rubber tree. Plant Pathology. 70 (2), pp. 484-491. https://doi.org/10.1111/ppa.13281

Population structure, pathogenicity, and fungicide sensitivity of Colletotrichum siamense from different hosts in Hainan, China

A - Papers appearing in refereed journals

Cao, X., Zhu, Z., Che, H., West, J. S., Lin, Y., Luo, D. and Xu, X. 2021. Population structure, pathogenicity, and fungicide sensitivity of Colletotrichum siamense from different hosts in Hainan, China. Plant Pathology. 70 (5), pp. 1158-1167. https://doi.org/10.1111/ppa.13361

Contrasting levels of genetic predictability in the evolution of resistance to major classes of fungicides

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2021. Contrasting levels of genetic predictability in the evolution of resistance to major classes of fungicides. Molecular Ecology. https://doi.org/10.1111/mec.15877

Take-all disease: New insights into an important wheat root pathogen

A - Papers appearing in refereed journals

Palma-Guerrero, J., Chancellor, T., Spong, J., Canning, G., Hammond, J., McMillan, V. E. and Hammond-Kosack, K. E. 2021. Take-all disease: New insights into an important wheat root pathogen. Trends in Plant Science. 26 (8), pp. 836-848. https://doi.org/10.1016/j.tplants.2021.02.009

Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Stephens, C., Olmez, F., Blyth, H., McDonald, M., Bansal, A., Turgay, E. B., Hahn, F., Saintenac, C., Nekrasov, V., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2021. Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. Molecular Plant Pathology. 22 (9), pp. 1121-1133. https://doi.org/10.1111/mpp.13101

The Multi-Fungicide Resistance Status of Aspergillus fumigatus Populations in Arable Soils and the Wider European Environment

A - Papers appearing in refereed journals

Fraaije, B. A., Atkins, S. L., Hanley, S. J., Macdonald, A. J. and Lucas, J. 2020. The Multi-Fungicide Resistance Status of Aspergillus fumigatus Populations in Arable Soils and the Wider European Environment. Frontiers in Microbiology. 11, p. 599233. https://doi.org/10.3389/fmicb.2020.599233

The one health problem of azole resistance in Aspergillus fumigatus: current insights and future research agenda

A - Papers appearing in refereed journals

Verweij, P. E., Lucas, J., Arendrup, M. C., Bowyer, P., Brinkmann, A. J. F., Denning, D. W., Dyer, P. S., Fisher, M. C., Geenen, P. L., Gisi, U., Hermann, D., Hoogendijk, A., Kiers, E., Lagrou, K., Melchers, W. J. G., Rhodes, J., Rietveld, A. G., Schoustra, S. E., Stenzel, K., Zwaan, B. J. and Fraaije, B. A. 2020. The one health problem of azole resistance in Aspergillus fumigatus: current insights and future research agenda. Fungal biology reviews. 34, pp. 202-214. https://doi.org/10.1016/j.fbr.2020.10.003

Widespread distribution of resistance to triazole fungicides in Brazilian populations of the wheat blast pathogen

A - Papers appearing in refereed journals

Poloni, N. M., Carvalho, G., Vicentini, S. N. C., Dorigan, A. F., Maciel, J. L. N., McDonald, B. A., Moreira, S. I., Hawkins, N. J., Fraaije, B. A., Kelly, D. E., Kelly, S. L. and Ceresini, P. C. 2020. Widespread distribution of resistance to triazole fungicides in Brazilian populations of the wheat blast pathogen. Plant Pathology. https://doi.org/10.1111/ppa.13288

Novel Multiplex and Loop-Mediated Isothermal Amplification (LAMP) Assays for Rapid Species and Mating-Type Identification of Oculimacula acuformis and O. yallundae (Causal Agents of Cereal Eyespot), and Application for Detection of Ascospore Dispersal and in planta Use

A - Papers appearing in refereed journals

King, K. M., Eyres, G. J., West, J. S., Siraf, C., Matusinsky, P., Palicova, J., Canning, G., Bateman, G. L., Fraaije, B. A. and Dyer, P. S. 2020. Novel Multiplex and Loop-Mediated Isothermal Amplification (LAMP) Assays for Rapid Species and Mating-Type Identification of Oculimacula acuformis and O. yallundae (Causal Agents of Cereal Eyespot), and Application for Detection of Ascospore Dispersal and in planta Use. Phytopathology. https://doi.org/10.1094/PHYTO-04-20-0116-R

Ensembl Genomes 2020-enabling non-vertebrate genomic research

A - Papers appearing in refereed journals

Cuzick, A., Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, A., Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, K. E., Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Wei, S., Ware, D., Williams, G., Yates, A. D. and Flicek, P. 2020. Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Research. 48 (D1), pp. D689-D695. https://doi.org/10.1093/nar/gkz890

Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum

A - Papers appearing in refereed journals

Machado, A., Walker, C., Lee, W., Urban, M. and Hammond-Kosack, K. E. 2020. Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum . Fungal Biology. 124 (9), pp. 753-765. https://doi.org/10.1016/j.funbio.2020.05.001

Genome Sequence of Fusarium graminearum strain CML3066 isolated from a wheat spike in Southern Brazil

A - Papers appearing in refereed journals

Wood, A. K. M., King, R., Urban, M., Nicolli, C. P., Del Ponte, E. M. and Hammond-Kosack, K. E. 2020. Genome Sequence of Fusarium graminearum strain CML3066 isolated from a wheat spike in Southern Brazil. Microbiology Resource Announcements. 9 (19), pp. e00157-20. https://doi.org/10.1128/MRA.00157-20

Covid-19: dogma over potential for prolonged droplet dispersal in air

A - Papers appearing in refereed journals

West, J. S. and Perryman, S. A. M. 2020. Covid-19: dogma over potential for prolonged droplet dispersal in air. Frontiers in public health. 8, p. 551836. https://doi.org/10.3389/fpubh.2020.551836

Proteinaceous effector discovery and characterisation in filamentous plant pathogens

A - Papers appearing in refereed journals

Kanja, C. and Hammond-Kosack, K. E. 2020. Proteinaceous effector discovery and characterisation in filamentous plant pathogens. Molecular Plant Pathology. 21 (10), pp. 1353-1376. https://doi.org/10.1111/mpp.12980

PHI-base - the Pathogen–Host Interactions database

A - Papers appearing in refereed journals

Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, K. and Hammond-Kosack, K. E. 2020. PHI-base - the Pathogen–Host Interactions database . Nucleic Acids Research. 48 (Database issue D1), pp. D613-D620. https://doi.org/10.1093/nar/gkz904

Eight Colletotrichum species, including a novel species, are associated with areca palm anthracnose in Hainan, China

A - Papers appearing in refereed journals

Cao, X., Xu, X., Che, H., West, J. S. and Luo, D. 2019. Eight Colletotrichum species, including a novel species, are associated with areca palm anthracnose in Hainan, China. Plant Disease. 104 (5), pp. 1369-1377. https://doi.org/10.1094/PDIS-10-19-2077-RE

A phylogenetically distinct lineage of Pyrenopeziza brassicae associated with chlorotic leaf spot of Brassicaceae in North America

A - Papers appearing in refereed journals

Carmody, S., King, K. M., Ocamb, C., Fraaije, B. A., West, J. S. and Du Toit, L. 2019. A phylogenetically distinct lineage of Pyrenopeziza brassicae associated with chlorotic leaf spot of Brassicaceae in North America . Plant Pathology. 69 (3), pp. 518-537. https://doi.org/10.1111/ppa.13137

PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets

A - Papers appearing in refereed journals

Janowska-Seja, E. I., Lysenko, A., Urban, M., Rawlings, C. J., Toska, S. and Hammond-Kosack, K. E. 2019. PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. Frontiers in Microbiology. 10 (2721). https://doi.org/10.3389/fmicb.2019.02721

Characteristics and distribution of Colletotrichum species in coffee plantations in Hainan, China

A - Papers appearing in refereed journals

Cao, X. R., Xu, X. M., Che, H. Y., West, J. S. and Luo, D. Q. 2019. Characteristics and distribution of Colletotrichum species in coffee plantations in Hainan, China. Plant Pathology. 68 (6), pp. 1146-1156. https://doi.org/10.1111/ppa.13028

sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem

A - Papers appearing in refereed journals

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem. Frontiers in Plant Science. 10 (892). https://doi.org/10.3389/fpls.2019.00892

First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus

A - Papers appearing in refereed journals

King, K. M., Hawkins, N. J., Atkins, S. L., Dyer, P. S., West, J. S. and Fraaije, B. A. 2019. First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus . Mycoses. https://doi.org/10.1111/myc.12959

Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat

A - Papers appearing in refereed journals

Dilks, T., Halsey, K., De Vos, R., Hammond-Kosack, K. E. and Brown, N. A. 2019. Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat. PLOS Pathogens. 15 (4), p. e1007666. https://doi.org/10.1371/journal.ppat.1007666

WGIN Stakeholders' Newsletter [April 2019]

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E., Riche, A. B., Mcmillan, V. E., Aradottir, G. I., Hammond-Kosack, M., Lister, C. and Griffiths, S. 2019. WGIN Stakeholders' Newsletter [April 2019]. WGIN Stakeholders' Newsletter.

The Challenges Posed by Global Broadacre Crops in Delivering Smart Agri- Robotic Solutions: A Fundamental Rethink is Required

A - Papers appearing in refereed journals

Grieve, B. D., Duckett, T., Collinson, M., Boyd, L., West, J. S., Yin, H., Arvin, F. and Pearson, S. 2019. The Challenges Posed by Global Broadacre Crops in Delivering Smart Agri- Robotic Solutions: A Fundamental Rethink is Required. Global Food Security. 23, pp. 116-124. https://doi.org/10.1016/j.gfs.2019.04.011

Saving Plants From Disease

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2019. Saving Plants From Disease. FuturumCareers. pp. 1-6. https://doi.org/10.33424/FUTURUM12

Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction

C2 - Non-edited contributions to conferences

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici

Conference paper

Stephens, C., Blyth, H., Olmez, F., Turgay, E. B., Chen, H., McDonald, M., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2019. Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici. Molecular Biology of Plant Pathogens (MBPP) Conference. John Innes Centre, Norwich, UK 18 Mar 2019

A loop-mediated isothermal amplification (LAMP) assay for rapid and specific detection of airborne inoculum of Uromyces betae (sugar beet rust)

A - Papers appearing in refereed journals

Kaczmarek, A. M., King, K. M., West, J. S., Stevens, M., Sparkes, D. and Dickinson, M. 2019. A loop-mediated isothermal amplification (LAMP) assay for rapid and specific detection of airborne inoculum of Uromyces betae (sugar beet rust). Plant Disease. 103 (3), pp. 417-421. https://doi.org/10.1094/PDIS-02-18-0337-RE

Impact of epoxiconazole on Fusarium head blight control, grain yield and deoxynivalenol accumulation in wheat

A - Papers appearing in refereed journals

Duan, Y., Xiao, X., Li, T., Chen, W., Wang, J., Fraaije, B. A. and Zhou, M. G. 2018. Impact of epoxiconazole on Fusarium head blight control, grain yield and deoxynivalenol accumulation in wheat. Pesticide Biochemistry and Physiology. 152, pp. 138-147. https://doi.org/10.1016/j.pestbp.2018.09.012

Simultaneous detection of multiple benzimidazole resistant β-tubulin variants of Botrytis cinerea using loop mediated isothermal amplification

A - Papers appearing in refereed journals

Duan, Y., Yang, Y., Wang, J. X., Chen, C. J., Steinberg, G., Fraaije, B. A. and Zhou, M. G. 2018. Simultaneous detection of multiple benzimidazole resistant β-tubulin variants of Botrytis cinerea using loop mediated isothermal amplification. Plant Disease. 102 (10), pp. 2016-2024. https://doi.org/10.1094/PDIS-03-18-0542-RE

Development and application of a simple, rapid and sensitive method for detecting moderately carbendazim‐resistant isolates in Botrytis cinerea

A - Papers appearing in refereed journals

Duan, Y. B., Yang, Y., Li, M. X., Fraaije, B. A. and Zhou, M. G. 2018. Development and application of a simple, rapid and sensitive method for detecting moderately carbendazim‐resistant isolates in Botrytis cinerea. Annals of Applied Biology - AAB. 172 (3), pp. 355-365. https://doi.org/10.1111/aab.12426

Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome

C1 - Edited contributions to conferences/learned societies

Machado, A., King, R., Urban, M., Del Ponte, E. M., Tessmann, D. J., Kanyuka, K. and Hammond-Kosack, K. E. 2018. Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-108-10-S1.1

Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions

A - Papers appearing in refereed journals

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2018. Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions. bioRxiv. https://doi.org/10.1101/501650

Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

Conference poster

Stephens, C., Blyth, H., Olmez, F., McDonald, M., Solomon, P., Milgate, A., Chen, H., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2018. Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. British Society of Plant Pathology Presidential Meeting, Warwick 2018. Warwick University 10 Dec 2018 https://doi.org/N/A

Non‐target site SDHI resistance is present as standing genetic variation in field populations of Zymoseptoria tritici

A - Papers appearing in refereed journals

Yamashita, M. and Fraaije, B. A. 2018. Non‐target site SDHI resistance is present as standing genetic variation in field populations of Zymoseptoria tritici. Pest Management Science. 74 (3), pp. 672-681. https://doi.org/10.1002/ps.4761

Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas)

A - Papers appearing in refereed journals

King, K. M., Krivova, V., Canning, G. G. M., Hawkins, N. J., Kaczmarek, A. M., Perryman, S. A. M., Dyer, P. S., Fraaije, B. A. and West, J. S. 2018. Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas). Plant Pathology. 67 (1), pp. 167-174. https://doi.org/10.1111/ppa.12717

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

A - Papers appearing in refereed journals

Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808. https://doi.org/10.1093/nar/gkx1011

Changes in field dose–response curves for demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) fungicides against Zymoseptoria tritici, related to laboratory sensitivity phenotyping and genotyping assays

A - Papers appearing in refereed journals

Blake, J. J., Gosling, P., Fraaije, B. A., Burnett, F. J., Knight, S. M., Kildea, S. and Paveley, N. D. 2018. Changes in field dose–response curves for demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) fungicides against Zymoseptoria tritici, related to laboratory sensitivity phenotyping and genotyping assays. Pest Management Science. 74 (2), pp. 302-313. https://doi.org/10.1002/ps.4725

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Kettles, G. J., Bayon, C., Sparks, C. A., Canning, G., Kanyuka, K. and Rudd, J. J. 2018. Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici. New Phytologist. 217 (1), pp. 320-331. https://doi.org/10.1111/nph.14786

Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals

Derbyshire, M. C., Gohari, A. M., Mehrabi, R., Kilaru, S., Steinberg, G., Ali, S., Bailey, A., Hammond-Kosack, K. E., Kema, G. H. J. and Rudd, J. J. 2018. Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat. Scientific Reports. 8 (17069). https://doi.org/10.1038/s41598-018-35223-8

Detecting Wheat Powdery Mildew and Predicting Grain Yield Using Unmanned Aerial Photography

A - Papers appearing in refereed journals

Liu, W., Cao, X., Fan, J, Wang, Z., Yan, Z., Luo, Y., West, J. S., Xu, X. and Zhou, Y. 2018. Detecting Wheat Powdery Mildew and Predicting Grain Yield Using Unmanned Aerial Photography. Plant Disease. 102, pp. 1981-1988. https://doi.org/10.1094/PDIS-12-17-1893-RE

Forecasting sclerotinia infection in UK oilseed rape

C1 - Edited contributions to conferences/learned societies

Young, C., Canning, G. and West, J. S. 2018. Forecasting sclerotinia infection in UK oilseed rape. IOBC.

Fitness Penalties in the Evolution of Fungicide Resistance

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2018. Fitness Penalties in the Evolution of Fungicide Resistance. Annual Review of Phytopathology. 56, pp. 339-360. https://doi.org/10.1146/annurev-phyto-080417-050012

The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

A - Papers appearing in refereed journals

Hellin, P., King, R., Urban, M., Hammond-Kosack, K. E. and Legreve, A 2018. The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1). Frontiers in Microbiology. 9 (1385). https://doi.org/10.3389/fmicb.2018.01385

Arable Crop Disease Alert System - AHDB Project Report 594

D1 - Technical reports: non-confidential

West, J. S., Canning, G., King, K. M., Fraaije, B. A. and Wili, S. 2018. Arable Crop Disease Alert System - AHDB Project Report 594. Stoneleigh Home Grown Cereals Authority (HGCA).

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

A - Papers appearing in refereed journals

King, R., Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2018. Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics. 19, p. 269. https://doi.org/10.1186/s12864-018-4612-2

Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi

A - Papers appearing in refereed journals

Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115. https://doi.org/10.1093/jxb/ery136

Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen

A - Papers appearing in refereed journals

Mcmillan, V. E., Canning, G., Moughan, J., White, R. P., Gutteridge, R. J. and Hammond-Kosack, K. E. 2018. Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen. Scientific Reports. 8 (9550), pp. 1-13. https://doi.org/10.1038/s41598-018-25511-8

Foxtail mosaic virus: a new viral vector for protein expression in cereals

A - Papers appearing in refereed journals

Bouton, C., King, R., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E. and Kanyuka, K. 2018. Foxtail mosaic virus: a new viral vector for protein expression in cereals. Plant Physiology. 177 (4), pp. 1352-1367. https://doi.org/10.1104/pp.17.01679

Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China

A - Papers appearing in refereed journals

Cao, X., Xu, X., Che, H., West, J. S. and Luo, D. 2018. Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China. Plant Disease. 103 (1), pp. 117-124. https://doi.org/10.1094/PDIS-02-18-0374-RE

Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb)

A - Papers appearing in refereed journals

Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. and Bregitzer, P. P. 2018. Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb). Fungal Genetics and Biology. 115 (June), pp. 90-93. https://doi.org/10.1016/j.fgb.2018.01.002

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x

Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU

A - Papers appearing in refereed journals

Van Bruggen, A. H. C., West, J. S., Van der Werf, W., Potting, R. P. J., Gardi, C., Koufakis, I., Zelenev, V. V., Narouei-Khandan, H., Schilder, A. and Harmon, P. 2018. Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU. Annals of Applied Biology - AAB. 172 (2), pp. 126-147. https://doi.org/10.1111/aab.12414

Inoculum potential of Sclerotinia sclerotiorum sclerotia depends on isolate and host plant

A - Papers appearing in refereed journals

Taylor, A., Coventry, E., Handy, C., West, J. S., Young, C. S. and Clarkson, J. P. 2018. Inoculum potential of Sclerotinia sclerotiorum sclerotia depends on isolate and host plant. Plant Pathology. 67 (6), pp. 1286-1295. https://doi.org/10.1111/ppa.12843

Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America

C2 - Non-edited contributions to conferences

Carmody, S., King, K. M., Classen, B., Fraaije, B. A., West, J. S., Ocamb, C. M. and du Toit, L. 2017. Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America. APS Annual Meeting, San Antonio, Texas, USA, August 5-9, 2017. American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-107-12-S5.1

Detection of biotic and abiotic stresses in crops by using hierarchical self organizing classifiers

A - Papers appearing in refereed journals

Pantazi, X., Dimitrios, M., Oberti, R., West, J. S., Mouazen, A. and Bochtis, D. 2017. Detection of biotic and abiotic stresses in crops by using hierarchical self organizing classifiers. Precision Agriculture. 18 (3), p. 383–393. https://doi.org/10.1007/s11119-017-9507-8

Identification of pest and disease resistance in the UK OREGIN Brassica biodiversity collection

C1 - Edited contributions to conferences/learned societies

Huang, Y. J., West, J. S., Mitrousia, G. K., Wood, T. and Fitt, B. D. L. 2017. Identification of pest and disease resistance in the UK OREGIN Brassica biodiversity collection. Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .

Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments?

C1 - Edited contributions to conferences/learned societies

Young, C., Van Den Bosch, F., Fraaije, B. A., Burnett, F., Knight, S., Gosling, P. and Paveley, N. 2017. Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments? Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .

Dose-dependent selection drives lineage replacement during the experimental evolution of SDHI fungicide resistance in Zymoseptoria tritici

A - Papers appearing in refereed journals

Gutierrez-Alonso, O., Hawkins, N. J., Cools, H. J., Shaw, M. W. and Fraaije, B. A. 2017. Dose-dependent selection drives lineage replacement during the experimental evolution of SDHI fungicide resistance in Zymoseptoria tritici. Evolutionary Applications. 10 (10), pp. 1055-1066. https://doi.org/10.1111/eva.12511

Distribution and Fungicide Sensitivity of Colletotrichum Species Complexes from Rubber Tree in Hainan, China

A - Papers appearing in refereed journals

Cao, X. R., Xu, X. M., Che, H. Y., West, J. S. and Luo, D. Q. 2017. Distribution and Fungicide Sensitivity of Colletotrichum Species Complexes from Rubber Tree in Hainan, China. Plant Disease. 101 (10), pp. 1774-1780. https://doi.org/10.1094/pdis-03-17-0352-re

Azole sensitivity in Leptosphaeria pathogens of oilseed rape: the role of lanosterol 14 alpha-demethylase

A - Papers appearing in refereed journals

Sewell, T. R., Hawkins, N. J., Stotz, H. U., Huang, Y. J., Kelly, S. L., Kelly, D. E., Fraaije, B. A. and Fitt, B. D. L. 2017. Azole sensitivity in Leptosphaeria pathogens of oilseed rape: the role of lanosterol 14 alpha-demethylase. Scientific Reports. 7 (15849). https://doi.org/10.1038/s41598-017-15545-9

Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains

C2 - Non-edited contributions to conferences

Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.

Precision disease protection systems for agriculture and horticulture

A - Papers appearing in refereed journals

West, J. S., Canning, G., Perryman, S. A. M., Kaczmarek, A. and King, K. M. 2017. Precision disease protection systems for agriculture and horticulture. Aspects of Applied Biology. 135, pp. 1-8.

Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713

Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields

C2 - Non-edited contributions to conferences

Kanyuka, K., Machado, A., Urban, M., Lee, W. S., Brown, N. J., King, R. A., Lau, E. Y., Sparks, C. A., Bonato, A. L. V., Tibola, C. S., Martins, N. F., Aragao, F. J., West, J., Fernandes, J. M. C. and Hammond-Kosack, K. E. 2017. Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields. 1st COST iPlanta Conferernce; "Creating the plant RNAi research network CA15223", La Sapienza - CNR Headquarter , Rome, Italy, 15-17 February 2017.

Pest categorisation of Ips sexdentatus

D1 - Technical reports: non-confidential

EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M. and Grégoire, J-C. 2017. Pest categorisation of Ips sexdentatus. https://doi.org/10.2903/j.efsa.2017.4999

Pest categorisation of Pseudocercospora pini-densiflorae

D1 - Technical reports: non-confidential

EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P. and Pautasso, M. 2017. Pest categorisation of Pseudocercospora pini-densiflorae. https://doi.org/10.2903/j.efsa.2017.5029

Pest categorisation of Gremmeniella abietina

D1 - Technical reports: non-confidential

EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P. and Pautasso, M. 2017. Pest categorisation of Gremmeniella abietina. https://doi.org/10.2903/j.efsa.2017.5030

Citrus junos as a host of citrus bacterial canker

D1 - Technical reports: non-confidential

Jeger, M., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Pruvost, O., Kozelska, S., Guajardo, I. M., Bragard, C. and EFSA Panel on Plant Health (PLH) 2017. Citrus junos as a host of citrus bacterial canker. https://doi.org/10.2903/j.efsa.2017.4876

Pest categorisation of Entoleuca mammata

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P., Pautasso, M. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Entoleuca mammata. https://doi.org/10.2903/j.efsa.2017.4925

Pest categorisation of Dendroctonus micans

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Dendroctonus micans. https://doi.org/10.2903/j.efsa.2017.4880

Pest risk assessment of Atropellis spp. for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Puglia, A. P., Vettraino, A. M., Pautasso, M., Rossi, V. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Atropellis spp. for the EU territory. https://doi.org/10.2903/j.efsa.2017.4877

Pest categorisation of Anthonomus signatus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Czwienczek, E., Aukhojee, M., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Anthonomus signatus. https://doi.org/10.2903/j.efsa.2017.4882

Pest categorisation of Pseudocercospora angolensis

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Anton, J., Miret, J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gonzalez-Dominguez, E., Vicent, A., Vloutoglou, I., Bottex, B., Rossi, V. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Pseudocercospora angolensis. https://doi.org/10.2903/j.efsa.2017.4883

Pest categorisation of Ips typographus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips typographus. https://doi.org/10.2903/j.efsa.2017.4881

Pest categorisation of Spodoptera frugiperda

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Aukhojee, M., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Spodoptera frugiperda. https://doi.org/10.2903/j.efsa.2017.4927

Pest categorisation of Little cherry pathogen (non-EU isolates)

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Little cherry pathogen (non-EU isolates). https://doi.org/10.2903/j.efsa.2017.4926

Pest categorisation of Cadang-Cadang viroid

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Werf, W. V. D., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Cadang-Cadang viroid. https://doi.org/10.2903/j.efsa.2017.4928

Pest risk assessment of Radopholus similis for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Schans, J., Kozelska, S., Mosbach-Schulz, O., Urek, G. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Radopholus similis for the EU territory. https://doi.org/10.2903/j.efsa.2017.4879

Pest risk assessment of Diaporthe vaccinii for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Mosbach-Schulz, O., Koufakis, I., Van Bruggen, A. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Diaporthe vaccinii for the EU territory. https://doi.org/10.2903/j.efsa.2017.4924

Pest risk assessment of Eotetranychuslewisi for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Bergeretti, F., Bjorklund, N., Mosbach-Schulz, O., Vos, S., Navajas Navarro, M. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Eotetranychuslewisi for the EU territory. https://doi.org/10.2903/j.efsa.2017.4878

Pest categorisation of Beet curly top virus (non-EU isolates)

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Beet curly top virus (non-EU isolates). https://doi.org/10.2903/j.efsa.2017.4998

Pest categorisation of Witches' broom disease of lime (Citrus aurantifolia) phytoplasma

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Dickinson, M., Marzachi, C., Hollo, G., Caffier, D. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Witches' broom disease of lime (Citrus aurantifolia) phytoplasma. https://doi.org/10.2903/j.efsa.2017.5027

Pest categorisation of Palm lethal yellowing phytoplasmas

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Dickinson, M., Marzachi, C., Hollo, G., Caffier, D. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Palm lethal yellowing phytoplasmas. https://doi.org/10.2903/j.efsa.2017.5028

Pest categorisation of Satsuma dwarf virus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Satsuma dwarf virus. https://doi.org/10.2903/j.efsa.2017.5032

Pest categorisation of Tatter leaf virus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Tatter leaf virus. https://doi.org/10.2903/j.efsa.2017.5033

Pest categorisation of Citrus tristeza virus (non-European isolates)

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Citrus tristeza virus (non-European isolates). https://doi.org/10.2903/j.efsa.2017.5031

Pest categorisation of Hishimonus phycitis

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Aukhojee, M., Bergeretti, F., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Hishimonus phycitis. https://doi.org/10.2903/j.efsa.2017.5037

Pest categorisation of Ips duplicatus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips duplicatus. https://doi.org/10.2903/j.efsa.2017.5040

Pest categorisation of Ips amitinus

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips amitinus. https://doi.org/10.2903/j.efsa.2017.5038

RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals

A - Papers appearing in refereed journals

Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799. https://doi.org/10.1002/ps.4748

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection

A - Papers appearing in refereed journals

Brown, N. A., Evans, J., Mead, A. and Hammond-Kosack, K. E. 2017. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. Molecular Plant Pathology. 18 (9), pp. 1295-1312. https://doi.org/10.1111/mpp.12564

A review of wheat diseases – a field perspective

A - Papers appearing in refereed journals

Figueroa, M., Hammond-Kosack, K. E. and Solomon, P. S. 2017. A review of wheat diseases – a field perspective. Molecular Plant Pathology. 19 (6), pp. 1523-1536. https://doi.org/10.1111/mpp.12618

Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe

A - Papers appearing in refereed journals

Nicolaisen, M., West, J. S., Sapkota, R., Canning, G., Schoen, C. and Justesen, A. F. 2017. Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe. Frontiers in Microbiology. 8 (1729). https://doi.org/10.3389/fmicb.2017.01729

Intra-diurnal and daily changes in Didymella ascospore concentrations in the air of an urban site

A - Papers appearing in refereed journals

Sadys, M. and West, J. S. 2017. Intra-diurnal and daily changes in Didymella ascospore concentrations in the air of an urban site. Fungal Ecology. 27A (June), pp. 87-95. https://doi.org/10.1016/j.funeco.2017.03.002

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

A - Papers appearing in refereed journals

Urban, M., Cuzick, A., Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar and Hammond-Kosack, K. E. 2017. PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. Nucleic Acids Research. 45 (D1), pp. D604-D610. https://doi.org/10.1093/nar/gkw1089

Novel technologies for the detection of Fusarium head blight disease and airborne inoculum

A - Papers appearing in refereed journals

West, J. S., Canning, G., Perryman, S. A. M. and King, K. M. 2017. Novel technologies for the detection of Fusarium head blight disease and airborne inoculum. Tropical Plant Pathology. 42 (3), pp. 203-209. https://doi.org/10.1007/s40858-017-0138-4

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

A - Papers appearing in refereed journals

Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3). https://doi.org/10.1111/pbi.12631

Annotation of Fusarium graminearum (PH-1) version 5.0

A - Papers appearing in refereed journals

King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16. https://doi.org/10.1128/genomeA.01479-16

Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana

A - Papers appearing in refereed journals

Kettles, G. J., Bayon, C., Canning, G., Rudd, J. J. and Kanyuka, K. 2017. Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana. New Phytologist. 213 (1), pp. 338-350. https://doi.org/10.1111/nph.14215

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

A - Papers appearing in refereed journals

King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672

Science protecting plant health conference (SPPH2017); 26-28 September, Brisbane, Australia

G - Articles in popular magazines and other technical publications

West, J. S. 2017. Science protecting plant health conference (SPPH2017); 26-28 September, Brisbane, Australia. Outlooks on Pest Management. https://doi.org/10.1564/v28_dec_00

Scientific opinion on four statements questioning the EU control strategy against Xylella fastidiosa

D1 - Technical reports: non-confidential

Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Scientific opinion on four statements questioning the EU control strategy against Xylella fastidiosa. https://doi.org/10.2903/j.efsa.2016.4450

Treatment solutions to cure Xylella fastidiosa diseased plants

D1 - Technical reports: non-confidential

Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Treatment solutions to cure Xylella fastidiosa diseased plants. https://doi.org/10.2903/j.efsa.2016.4456

Evaluation of new scientific information on Phyllosticta citricarpa in relation to the EFSA PLH Panel (2014) Scientific Opinion on the plant health risk to the EU

D1 - Technical reports: non-confidential

Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Evaluation of new scientific information on Phyllosticta citricarpa in relation to the EFSA PLH Panel (2014) Scientific Opinion on the plant health risk to the EU. https://doi.org/10.2903/j.efsa.2016.4513

Statement on diversity of Xylella fastidiosa subsp. pauca in Apulia EFSA Panel on Plant Health (PLH)

D1 - Technical reports: non-confidential

Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Statement on diversity of Xylella fastidiosa subsp. pauca in Apulia EFSA Panel on Plant Health (PLH). https://doi.org/10.2903/j.efsa.2016.4542

Susceptibility of Citrus spp., Quercus ilex and Vitis spp. to Xylella fastidiosa strain CoDiRO

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., De La Fuente, L., Lopes, J. R. S., Tramontini, S., Andueza, M., Candresse, T. and EFSA Panel on Plant Health (PLH) 2016. Susceptibility of Citrus spp., Quercus ilex and Vitis spp. to Xylella fastidiosa strain CoDiRO. https://doi.org/10.2903/j.efsa.2016.4601

Susceptibility of Phoenix roebelenii to Xylella fastidiosa

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Tramontini, S., Andueza, M., Candresse, T. and EFSA Panel on Plant Health (PLH) 2016. Susceptibility of Phoenix roebelenii to Xylella fastidiosa. https://doi.org/10.2903/j.efsa.2016.4600

Risk to plant health of Flavescence doree for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Bosco, D., Foissac, X., Strauss, G., Hollo, G., Mosbach-Schulz, O., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2016. Risk to plant health of Flavescence doree for the EU territory. Wiley. https://doi.org/10.2903/j.efsa.2016.4603

Risk assessment and reduction options for Ceratocystis platani in the EU

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Santini, A., Tsopelas, P., Vloutoglou, I., Pautasso, M., Rossi, V. and EFSA Panel on Plant Health (PLH) 2016. Risk assessment and reduction options for Ceratocystis platani in the EU. Wiley. https://doi.org/10.2903/j.efsa.2016.4640

Risk to plant health of Ditylenchus destructor for the EU territory

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Grégoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Mosbach-Schulz, O. and Urek, G. 2016. Risk to plant health of Ditylenchus destructor for the EU territory. Wiley. https://doi.org/10.2903/j.efsa.2016.4602

Risk assessment and reduction options for Cryphonectria parasitica in the EU

D1 - Technical reports: non-confidential

Jeger, M., Bragard, C., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Maresi, G., Prospero, S., Vettraino, A. M., Vloutoglou, I., Pautasso, M. and Rossi, V. 2016. Risk assessment and reduction options for Cryphonectria parasitica in the EU. https://doi.org/10.2903/j.efsa.2016.4641

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.

A - Papers appearing in refereed journals

Bresso, E., Togawa, R., Hammond-Kosack, K. E., Urban, M., Maigret, B. and Martins, N. F. 2016. GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics. 17 (Suppl 18), p. 463. https://doi.org/10.1186/s12859-016-1342-9

Predicting Resistance by Mutagenesis: Lessons from 45 Years of MBC Resistance

A - Papers appearing in refereed journals

Hawkins, N. J. and Fraaije, B. A. 2016. Predicting Resistance by Mutagenesis: Lessons from 45 Years of MBC Resistance. Frontiers in Microbiology. 7, p. 1814. https://doi.org/10.3389/fmicb.2016.01814

Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability. Plant and Soil. 405 (1-2), pp. 381-396. https://doi.org/10.1007/s11104-015-2495-4

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen

A - Papers appearing in refereed journals

Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

Plans for a pest risk assessment of Diaporthe vaccinii in the European Union by the Plant Health Panel of the European Food Safety Authority

C1 - Edited contributions to conferences/learned societies

Van Bruggen, A., Gardi, C., Gilioli, G., Koufakis, I., Van Der Werf, W. and West, J. S. 2016. Plans for a pest risk assessment of Diaporthe vaccinii in the European Union by the Plant Health Panel of the European Food Safety Authority. Acta Horticulturae XI International Vaccination Sympoium, Orlando, Florida, USA, 10-14 April, 2016. pp. 182

Resurrecting a 750-year-old plant virus

C2 - Non-edited contributions to conferences

Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.

A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley

C2 - Non-edited contributions to conferences

Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants

C2 - Non-edited contributions to conferences

Kettles, G. J., King, R., Hooper, J., Skinner, W., Hargreaves, J., Kanyuka, K., Fraaije, B. A. and Rudd, J. J. 2016. Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants. IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number S6-3

Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680

Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes

C1 - Edited contributions to conferences/learned societies

Urban, M., Irvine, A., Cuzick, A. and Hammond-Kosack, K. E. 2016. Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. Proceedings 5th ISFHB - 2nd IWWB Symposium, 5-10, Florianopolis, Brasil.

Pollen dispersal in a hybrid cereal canopy

C1 - Edited contributions to conferences/learned societies

Sadys, M., West, J. S., Spiller, M., Melichar, G., Stiewe, G. and Reynolds, A. M. 2016. Pollen dispersal in a hybrid cereal canopy. In : Proceedings 6th European Symposium on Aerobiology, At Lyon, France, 18-22 July, 2016 . pp. Oral 2315

First draft genome sequence of a UK strain (UK99) of Fusarium culmorum

A - Papers appearing in refereed journals

Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16. https://doi.org/10.1128/genomeA.00771-16

The genome of the emerging barley pathogen Ramularia collo-cygni

A - Papers appearing in refereed journals

McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584. https://doi.org/10.1186/s12864-016-2928-3

Take-all or nothing

A - Papers appearing in refereed journals

Hernández-Restrepo, M., Groenewald, J. Z., Elliott, M. L., Canning, G. and Crous, P. W. 2016. Take-all or nothing. Studies in Mycology. 83, pp. 19-48. https://doi.org/10.1016/j.simyco.2016.06.002

Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides.

A - Papers appearing in refereed journals

Mair, W., Lopez-Ruiz, F., Stammler, G ., Clark, W., Burnett, F., Hollomon, D., Ishii, H., Thind, T. S., Brown, J. K., Fraaije, B. A., Cools, H. J., Shaw, M., Fillinger, S., Walker, A. S., Mellado, E., Schnabel, G., Mehl, A. and Oliver, R. P. 2016. Proposal for a unified nomenclature for target-site mutations associated with resistance to fungicides. Pest Management Science. 72 (8), pp. 1449-1459. https://doi.org/10.1002/ps.4301

A role for BAK1 in the Zymoseptoria tritici-wheat interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease

A - Papers appearing in refereed journals

Bresso, E., Leroux, V., Urban, M., Hammond-Kosack, K. E., Maigret, B. and Martins, N. F. 2016. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease. Journal Of Molecular Modeling. 22, p. 163. https://doi.org/10.1007/s00894-016-3021-1

Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes

A - Papers appearing in refereed journals

Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes. Scientific Reports. 6, p. 25581. https://doi.org/10.1038/srep25581

Publishing FAIR data: an exemplar methodology utilizing PHI-base

A - Papers appearing in refereed journals

Rodriguez-Iglesias, A., Rodriguez-Gonzales, A., Irvine, A. G., Sesma, A., Urban, M., Hammond-Kosack, K. E. and Wilkinson, M. D. 2016. Publishing FAIR data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science. 7, p. 641. https://doi.org/10.3389/fpls.2016.00641

Detection and quantification of airborne inoculum of Blumeria graminis f. sp. tritici using quantitative PCR

A - Papers appearing in refereed journals

Cao, X., Yao, D., Zhou, Y., West, J. S., Xu, X., Luo, Y., Ding, K., Fan, J. and Duan, X. 2016. Detection and quantification of airborne inoculum of Blumeria graminis f. sp. tritici using quantitative PCR. European Journal of Plant Pathology. 146, pp. 225-229. https://doi.org/10.1007/s10658-016-0908-8

Annual Project Report March 2015 to Feb 2016. Report to AHDB on Project RD-2140022105: Arable Crop Diease Alert System

D1 - Technical reports: non-confidential

West, J. S., Canning, G. and Wili, S. 2016. Annual Project Report March 2015 to Feb 2016. Report to AHDB on Project RD-2140022105: Arable Crop Diease Alert System.

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

C2 - Non-edited contributions to conferences

Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Potential impact of climate change on fungal distributions: analysis of 2 years of contrasting weather in the UK

A - Papers appearing in refereed journals

Sadys, M., Kennedy, R. and West, J. S. 2016. Potential impact of climate change on fungal distributions: analysis of 2 years of contrasting weather in the UK. Aerobiologia. 32, pp. 127-137. https://doi.org/10.1007/s10453-015-9402-6

PhytoPath: an integrative resource for plant pathogen genomics

A - Papers appearing in refereed journals

Pedro, H., Maheswari, U., Urban, M., Irvine, A. G., Cuzick, A., Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, K. E. and Kersey, P. J. 2016. PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Research. 44 (D1), pp. D688-D693. https://doi.org/10.1093/nar/gkv1052

The trans-kingdom identification of negative regulators of pathogen hypervirulence

A - Papers appearing in refereed journals

Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2016. The trans-kingdom identification of negative regulators of pathogen hypervirulence. FEMS Microbiology Reviews. 40 (1), pp. 19-40. https://doi.org/10.1093/femsre/fuv042

Sigatoka Disease Complex of Banana in Brazil: Management Practices and Future Directions

A - Papers appearing in refereed journals

Brito Silva Darosci, F., Fraaije, B. A. and Miller, R. N. G. 2015. Sigatoka Disease Complex of Banana in Brazil: Management Practices and Future Directions. Outlooks on Pest Management. 26 (2), pp. 78-81. https://doi.org/10.1564/v26_apr_08

Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops

C1 - Edited contributions to conferences/learned societies

Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90

Exploring the susceptibility of cereal species to Phialophora fungi

C1 - Edited contributions to conferences/learned societies

Osborne, S., Mcmillan, V. E., Whalley, W. R., Foulkes, J. and Hammond-Kosack, K. E. 2015. Exploring the susceptibility of cereal species to Phialophora fungi. Abstracts Molecular Biology of Plant Pathogens Conference (MBPP), University of West England, Bristol, 8-9 April, 2015. pp. 56

Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant

C2 - Non-edited contributions to conferences

Jedryczka, M., Kaczmarek, J., Dawidziuk, A., Aubertot, J. N., Latunde-Dada, A. O., West, J. S., Sadys, M., Kennedy, R., Gilski, M., Grinn-Gofron, A. and Strzelczak, A. 2015. Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant. Abstracts 14th International Rapeseed Congress, Saskatoon, 5-9 July 2015 . pp. 98

Plant fungal resistance gene. WO2017103582 (A1)

H1 - Patents granted

Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).

Responses to plant pathogens

B - Book chapters etc edited externally

Hammond-Kosack, K. E. and Jones, J. D. G. 2015. Responses to plant pathogens. in: Jones, R. L., Buchanan, B. B. and Gruissem, W. (ed.) Biochemistry and molecular biology of plants, 2nd ed John Wiley & Sons Chichester, West Sussex. pp. 984-1050

Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars

G - Articles in popular magazines and other technical publications

Baggs, E., Moughan, J., Mcmillan, V. E. and Hammond-Kosack, K. E. 2015. Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars. BSPP News. 78, pp. 34-35.

Secreted biomolecules in fungal plant pathogenesis

B - Book chapters etc edited externally

Brown, N. A. and Hammond-Kosack, K. E. 2015. Secreted biomolecules in fungal plant pathogenesis. in: Gupta, V. K., Sreenivasaprasad, S. and Mach, R. L. (ed.) Fungal biomolecules: sources, applications and recent developments John Wiley & Sons Chichester, West Sussex. pp. 263-310

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota

A - Papers appearing in refereed journals

Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038

The use of mathematical models to guide fungicide resistance management decisions

B - Book chapters etc edited externally

Van Den Bosch, F., Fraaije, B. A., Oliver, R., Van Den Berg, F. and Paveley, N. 2015. The use of mathematical models to guide fungicide resistance management decisions. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 49-62

Evidence-based resistance management: a review of existing evidence

B - Book chapters etc edited externally

Van Den Bosch, F., Paveley, N., Fraaije, B. A., Van Den Berg, F. and Oliver, R. 2015. Evidence-based resistance management: a review of existing evidence. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 63-76

Host to a stranger: Arabidopsis and Fusarium ear blight

A - Papers appearing in refereed journals

Brewer, H. C. and Hammond-Kosack, K. E. 2015. Host to a stranger: Arabidopsis and Fusarium ear blight. Trends in Plant Science. 20, pp. 651-663. https://doi.org/10.1016/j.tplants.2015.06.011

Impact of climate change on diseases in sustainable arable crop systems: CLIMDIS (HGCA Project Report No. 539)

D1 - Technical reports: non-confidential

West, J. S., Fitt, B. D. L., Townsend, J. A., Stevens, M., Edwards, S. G., Turner, J. A., Ellerton, D., Flind, A., King, J., Hasler, J., Werner, C. P., Tapsell, C., Holdgate, S., Summers, R., Angus, B. and Edmonds, J. 2015. Impact of climate change on diseases in sustainable arable crop systems: CLIMDIS (HGCA Project Report No. 539). Home Grown Cereals Authority (HGCA) Stoneleigh.

Scientific opinion on hot water treatment of Vitis sp. for Xylella fastidiosa

D1 - Technical reports: non-confidential

EFSA Panel on Plant Health (PLH), Parnell, S. and West, J. S. 2015. Scientific opinion on hot water treatment of Vitis sp. for Xylella fastidiosa. European Food Safety Authority,. https://doi.org/10.2903/j.efsa.2015.4225

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence

A - Papers appearing in refereed journals

Urban, M., Irvine, A. G., Cuzick, A. and Hammond-Kosack, K. E. 2015. Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. Frontiers in Plant Science. 6, p. 605. https://doi.org/10.3389/fpls.2015.00605

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

A - Papers appearing in refereed journals

King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544. https://doi.org/10.1186/s12864-015-1756-1

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

A - Papers appearing in refereed journals

Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008

An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea

A - Papers appearing in refereed journals

Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions

A - Papers appearing in refereed journals

Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261. https://doi.org/10.1186/s12864-015-1412-9

Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals

Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions - MPMI. 28, pp. 590-604. https://doi.org/10.1094/MPMI-10-14-0346-R

Differences in MAT gene distribution and expression between Rhynchosporium species on grasses

A - Papers appearing in refereed journals

King, K. M., West, J. S., Fitt, B. D. L. and Dyer, P. S. 2015. Differences in MAT gene distribution and expression between Rhynchosporium species on grasses. Plant Pathology. 64 (2), pp. 344-354. https://doi.org/10.1111/ppa.12265

Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance

A - Papers appearing in refereed journals

Cao, X., Luo, Y., Zhou, Y., Fan, J., Xu, X., West, J. S., Duan, X. and Cheng, D. 2015. Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance. PLOS ONE. 10, p. e0121462. https://doi.org/10.1371/journal.pone.0121462

In planta transient expression systems for monocots

B - Book chapters etc edited externally

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition

A - Papers appearing in refereed journals

Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927

Innovations in air sampling to detect plant pathogens

A - Papers appearing in refereed journals

West, J. S. and Kimber, R. B. E. 2015. Innovations in air sampling to detect plant pathogens. Annals of Applied Biology - AAB. 166 (1), pp. 4-17. https://doi.org/10.1111/aab.12191

Optical sensing of crop diseases for phenotyping and early detection

C2 - Non-edited contributions to conferences

West, J. S. 2015. Optical sensing of crop diseases for phenotyping and early detection. Abstracts Workshop on Advances and Challenges of Phenotyping Biotic and Abiotic Stress: from Lab to Field, Sheffield, 12-13 January 2015 .

Airborne sampling and optical sensing methods for macro scale mapping

C2 - Non-edited contributions to conferences

West, J. S., Canning, G., Heard, S., Fraaije, B. A., Bonants, P., Van Gent-Pelzer, M., Nicolaisen, M., Justesen, A. F. and Wili, S. G. 2015. Airborne sampling and optical sensing methods for macro scale mapping. Abstracts IPM Innovation in Europe, Poznan, 14-16 January 2015 . pp. 57

The Pathogen-Host Interactions database (PHI-base): additions and future developments

A - Papers appearing in refereed journals

Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H. and Hammond-Kosack, K. E. 2015. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Research. 43, pp. D645-D655. https://doi.org/10.1093/nar/gku1165

The evolution of fungicide resistance

B - Book chapters etc edited externally

Lucas, J. A., Hawkins, N. J. and Fraaije, B. A. 2015. The evolution of fungicide resistance. in: Sariaslani, S. and Gadd, G. M. (ed.) Advances in Applied Microbiology Vol.90 Elsevier.

Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici

A - Papers appearing in refereed journals

Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605. https://doi.org/10.1111/nph.13323

Sterol biosynthesis inhibitors: modes of resistance and development of CYP51 mutations

C2 - Non-edited contributions to conferences

Hawkins, N. J. and Fraaije, B. A. 2014. Sterol biosynthesis inhibitors: modes of resistance and development of CYP51 mutations. 248th National Meeting of the Amercian Chemical Society (ACS) 10-14 August , San Francisco, CA, 2014. American Chemical Society (ACS).

Air Sampling Device. GB2496995 (B)

H1 - Patents granted

Wili, S. and West, J. S. 2014. Air Sampling Device. GB2496995 (B).

Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit (EFSA Supporting Publication 2014:EN-560)

D1 - Technical reports: non-confidential

Perryman, S. A. M. and West, J. S. 2014. Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit (EFSA Supporting Publication 2014:EN-560). European Food Safety Authority, Parma.

The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment

C2 - Non-edited contributions to conferences

Robinson, R. R., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2014. The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment. American Phytopathological Society (APS).

Use of loop-mediated isothermal amplification assays to detect azole-insensitive CYP51- overexpressing strains of Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2014. Use of loop-mediated isothermal amplification assays to detect azole-insensitive CYP51- overexpressing strains of Zymoseptoria tritici. American Phytopathological Society (APS).

Evolution and spread of azole-insensitive Zymoseptoria tritici field isolates in the UK

C2 - Non-edited contributions to conferences

Fraaije, B. A., Atkins, S., Luo, J., Diez De La Fuente, P. and Hawkins, N. J. 2014. Evolution and spread of azole-insensitive Zymoseptoria tritici field isolates in the UK. American Phytopathological Society (APS).

Monitoring air and rain for plant pathogens

C2 - Non-edited contributions to conferences

West, J. S. 2014. Monitoring air and rain for plant pathogens. Abstracts EFSA/EPPO Joint Workshop on Data Collection and Information Sharing in Plant Health, Parma, 1-3 April 2014 . pp. 12

Precision disease detection to enhance crop protection decisions in a changing climate

C1 - Edited contributions to conferences/learned societies

West, J. S. 2014. Precision disease detection to enhance crop protection decisions in a changing climate. Agronomic Decision Making in an Uncertain Climate. Aspects of Applied Biology 125 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 95-98

Healthy air - healthy plants - healthy people: methods for detection of air-borne pathogens and allergens

C2 - Non-edited contributions to conferences

Jedryczka, M., West, J. S., Kaczmarek, J., Latunde-Dada, A. O., Karolewski, Z. and Fitt, B. D. L. 2014. Healthy air - healthy plants - healthy people: methods for detection of air-borne pathogens and allergens. Abstracts 11th Conference of the European Foundation for Plant Pathology, Krakow, 8-13 September 2014 . pp. 101

New developments in identification and quantification of airborne inoculum

B - Book chapters etc edited externally

Heard, S. and West, J. S. 2014. New developments in identification and quantification of airborne inoculum. in: Gullino, M. L. and Bonants, P. J. M. (ed.) Detection and diagnostics of plant pathogens (Plant Pathology in the 21st Century 5) Springer, Dordrecht. pp. 3-19

Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum

A - Papers appearing in refereed journals

Brewer, H. C., Hammond-Kosack, K. E. and Hawkins, N. D. 2014. Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biology. 14, p. 317. https://doi.org/10.1186/s12870-014-0317-0

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703

Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit

A - Papers appearing in refereed journals

Perryman, S. A. M., Clark, S. J. and West, J. S. 2014. Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit. Scientific Reports. 4, p. 6568. https://doi.org/10.1038/srep06568

Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae

A - Papers appearing in refereed journals

Carter, H. E., Fraaije, B. A., West, J. S., Kelly, S. L., Mehl, A., Shaw, M. W. and Cools, H. J. 2014. Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae. Molecular Plant Pathology. 15 (5), pp. 513-522. https://doi.org/10.1111/mpp.12106

A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences

C2 - Non-edited contributions to conferences

Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069

Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction

C2 - Non-edited contributions to conferences

Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .

Rhynchosporium commune effector compliment and their role in pathogenicity on barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335

Rhynchosporium commune effectors identification and exploitation

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .

Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .

From Rhynchosporium commune genome sequence to barley resistance

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .

Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species

A - Papers appearing in refereed journals

Mcmillan, V. E., Gutteridge, R. J. and Hammond-Kosack, K. E. 2014. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biology. 14, p. 212. https://doi.org/10.1186/s12870-014-0212-8

Sterol biosynthesis inhibitors: modes of resistance and development of CPY51 mutations

C2 - Non-edited contributions to conferences

Hawkins, N. J. and Fraaije, B. A. 2014. Sterol biosynthesis inhibitors: modes of resistance and development of CPY51 mutations. Abstracts 13th IUPAC International Congress of Pesticide Chemistry, San Francisco, 10-14 August 2014 . pp. 234

Biotechnology: plant protection

B - Book chapters etc edited externally

Hammond-Kosack, K. E. 2014. Biotechnology: plant protection. in: Vanalfen, N. K. (ed.) Encyclopedia of agriculture and food systems, Vol. 2 Elsevier, San Diego. pp. 134-152

Plant pathogen dispersal

B - Book chapters etc edited externally

West, J. S. 2014. Plant pathogen dispersal. in: eLS John Wiley & Sons Chichester, West Sussex.

The role of chitin signalling in defence against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .

WGIN Stakeholders' Newsletter [April 2014]

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E., Hawkesford, M. J., Mcmillan, V. E., Hammond-Kosack, M., Shepherd, G., Griffiths, S. and Foulkes, J. 2014. WGIN Stakeholders' Newsletter [April 2014]. WGIN Stakeholders' Newsletter. April.

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .

Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance

A - Papers appearing in refereed journals

Hawkins, N. J., Cools, H. J., Sierotzki, H., Shaw, M. W., Knogge, W., Kelly, S. L., Kelly, D. E. and Fraaije, B. A. 2014. Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance. Molecular Biology And Evolution. 31 (7), pp. 1793-1802. https://doi.org/10.1093/molbev/msu134

Sustainable crop protection: the storm before the calm?

C1 - Edited contributions to conferences/learned societies

Lucas, J. A. and Fraaije, B. A. 2014. Sustainable crop protection: the storm before the calm? Proceedings Dundee Conference Crop Protection in Northern Britain, Dundee, 25-26 February 2014 . pp. 61-70

Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat

A - Papers appearing in refereed journals

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions - MPMI. 27 (3), pp. 236-243. https://doi.org/10.1094/MPMI-07-13-0201-R

Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting

C2 - Non-edited contributions to conferences

Robinson, R., Mauchline, T. H., Hirsch, P. R., Jackson, R., Frost, H. and Fraaije, B. A. 2013. Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting. Schneider, C. (ed.) Abstracts 5th International Symposium on Plant Protection and Plant Health in Europe: Endophytes for Plant Protection: the State of the Art, Berlin, 26-29 May 2013 . DPG, Braunschweig. pp. 4-6

Detection and quantification of airborne ascospores of Sclerotinia sclerotiorum by quantitative-PCR

C1 - Edited contributions to conferences/learned societies

Rogers, S. L., Atkins, S. D., Latunde-Dada, A. O., Stonard, J. F. and West, J. S. 2013. Detection and quantification of airborne ascospores of Sclerotinia sclerotiorum by quantitative-PCR. IOBC.

Detecting airborne inoculum to forecast oilseed rape diseases

C1 - Edited contributions to conferences/learned societies

West, J. S., Atkins, S. D., Mccartney, A., Evans, N. and Fitt, B. D. L. 2013. Detecting airborne inoculum to forecast oilseed rape diseases. IOBC.

Activity of enzymes associated with asparagine synthesis and breakdown in wheat under biotic and abiotic stress conditions

C1 - Edited contributions to conferences/learned societies

Kudiyarova, Z. S., Muttucumaru, N., West, J. S. and Halford, N. G. 2013. Activity of enzymes associated with asparagine synthesis and breakdown in wheat under biotic and abiotic stress conditions. Acrylamide, furans and other food-borne contaminants, from plant science to food chemistry. Aspects of Applied Biology 116 . pp. 119-124

CPY51 paralogues and azole sensitivity in Rhynchosporium commune

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. CPY51 paralogues and azole sensitivity in Rhynchosporium commune. Abstracts 14th Congress of the European Society for Evolutionary Biology, Lisbon, 19-24 August 2013 . pp. 859

Mapping the adaptive landscape of Mycosphaerella graminicola CYP51 under selection by azole fungicides

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. Mapping the adaptive landscape of Mycosphaerella graminicola CYP51 under selection by azole fungicides. Abstracts 14th Congress of the European Society for Evolutionary Biology, Lisbon, 19-24 August 2013 . pp. 19

Arable crop disease control, climate change and food security

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J. and West, J. S. 2013. Arable crop disease control, climate change and food security.

Constraints on the evolution of azole resistance in plant pathogenic fungi

A - Papers appearing in refereed journals

Cools, H. J., Hawkins, N. J. and Fraaije, B. A. 2013. Constraints on the evolution of azole resistance in plant pathogenic fungi. Plant Pathology. 62 (Suppl. 1), pp. 36-42. https://doi.org/10.1111/ppa.12128

R gene-mediated resistance in Brassica napus that limits asexual sporulation but allows sexual sporulation by Pyrenopeziza brassicae (light leaf spot)

C2 - Non-edited contributions to conferences

Boys, E. F., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2013. R gene-mediated resistance in Brassica napus that limits asexual sporulation but allows sexual sporulation by Pyrenopeziza brassicae (light leaf spot).

Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79

BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2013. Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola. Abstracts 5th Congress of European Microbiologists (FEMS), Leipzig, 21-25 July 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Berepiki, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Potential impact of a changing climate on Phoma stem canker and light leaf spot of oilseed rape in the UK

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Gladders, P., Huang, Y-J. and West, J. S. 2013. Potential impact of a changing climate on Phoma stem canker and light leaf spot of oilseed rape in the UK. IOBC.

Automated detection of airborne plant pathogen spores

C2 - Non-edited contributions to conferences

West, J. S. 2013. Automated detection of airborne plant pathogen spores. Abstracts Ciclo de Conferencias: Panorama Actual de las Ciencias Atmosfericas, Mexico City, 29 July - 9 August 2013 .

Precision pathology: the technological options

C2 - Non-edited contributions to conferences

West, J. S. 2013. Precision pathology: the technological options. Abstracts Visions of Plant Disease Management in 2050: Metropolis, Arcadia or Dystopia? BSPP Presidential Meeting 2013, Birmingham, 17-18 December 2013 .

DNA analysis for plant pathogen detection in air samples

C2 - Non-edited contributions to conferences

West, J. S., Canning, G., Bonants, P., Van Gent-Pelzer, M., Nicolaisen, M. and Justesen, A. 2013. DNA analysis for plant pathogen detection in air samples. Abstracts Future IPM in Europe, Riva del Garda, 19-21 March 2013 .

Biocontrol of stem-base infection by mycotoxin-producing Fusarium species by Fusarium equiseti and other fungal antagonists

A - Papers appearing in refereed journals

Perryman, S. A. M. and West, J. S. 2013. Biocontrol of stem-base infection by mycotoxin-producing Fusarium species by Fusarium equiseti and other fungal antagonists. Aspects of Applied Biology. 120, pp. 15-21.

Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Waalwijk, C., Van Der Lee, T., Fan, J., Atkins, S., West, J. S. and Fraaije, B. A. 2013. Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex. International Journal of Food Microbiology. 166, pp. 148-154. https://doi.org/10.1016/j.ijfoodmicro.2013.06.007

SYield - a risk alert system for Sclerotinia in oilseed rape

C2 - Non-edited contributions to conferences

West, J. S., Wili, S., Canning, G., Heard, S., Weiss, S., Jackman, P., Coldrick, Z., Mortimer, A., Drago, G., Johnson, G., Grieve, B., Norman, K., Elsom, K., Kozan, K., Easton, C., Jobling, G., Magri, B., Armstrong, S., Perfect, S., Scuffell, D. and Singh, S. 2013. SYield - a risk alert system for Sclerotinia in oilseed rape. Abstracts Bi-annual Meeting IOBC-ICOC Working Group on Integrated Control in Oilseed Crops, Belvaux, 8-10 October 2013 . pp. 49

Final report: Contract no NP/EFSA/PLH/2013/01-CTI

D1 - Technical reports: non-confidential

West, J. S. and Perryman, S. A. M. 2013. Final report: Contract no NP/EFSA/PLH/2013/01-CTI.

Evolutionary relationships between Rhynchosporium lolii sp. nov. and other Rhynchosporium species on grasses

A - Papers appearing in refereed journals

King, K. M., West, J. S., Brunner, P. C., Dyer, P. S. and Fitt, B. D. L. 2013. Evolutionary relationships between Rhynchosporium lolii sp. nov. and other Rhynchosporium species on grasses. PLOS ONE. 8, p. e72536. https://doi.org/10.1371/journal.pone.0072536

Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection

C2 - Non-edited contributions to conferences

Kanyuka, K., Lee, W-S., Hammond-Kosack, K. E. and Rudd, J. J. 2013. Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection. Abstracts 12th International Wheat Genetics Symposium (IWGS), Yokohama, 8-14 September 2013 .

Sustainable agriculture and greenhouse gas emissions

B - Book chapters etc edited externally

West, J. S. 2013. Sustainable agriculture and greenhouse gas emissions. in: Korres, N. E., O'Kiely, P., Benzie, J. A. H. and West, J. S. (ed.) Bioenergy production by anaerobic digestion Routledge. pp. 3-7

Bioenergy production by anaerobic digestion: using agricultural biomass and organic wastes

E - Books edited/written by staff member, alone/with others

Korres, N. E., O'Kiely, P., Benzie, J. A. H. and West, J. S. 2013. Bioenergy production by anaerobic digestion: using agricultural biomass and organic wastes. Routledge Abingdon.

Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates

A - Papers appearing in refereed journals

Carter, H. E., Cools, H. J., West, J. S., Shaw, M. W. and Fraaije, B. A. 2013. Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates. Pest Management Science. 69 (9), pp. 1040-1048. https://doi.org/10.1002/ps.3585

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts 1st Annual Meeting COST Action FA 1208 Pathogen-informed Strategies for Sustainable Broad-Spectrum Crop Resistance, Birnam, 9-11 October 2013 .

One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat

C2 - Non-edited contributions to conferences

Lucas, J. A., Cools, H. J. and Fraaije, B. A. 2013. One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat. Abstracts Society for General Microbiology Autumn Conference, Brighton, 2-4 September 2013 . pp. 13

Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report)

D1 - Technical reports: non-confidential

Kleinkauf, N., Verweij, P. E., Arendrup, M. C., Donnelly, P. J., Cuenca-Estrella, M., Fraaije, B. A., Melchers, W. J. G., Adriaenssens, N., Kema, G. H. J., Ullmann, A., Bowyer, P. and Denning, D. W. 2013. Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report). ECDC, Stockholm. https://doi.org/10.2900/76274

CYP51 paralogues and azole sensitivity in Rhynchosporium commune

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. CYP51 paralogues and azole sensitivity in Rhynchosporium commune. Chinese Society for Plant Pathology.

Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications

C2 - Non-edited contributions to conferences

Fraaije, B. A., Atkins, S., Luo, J., De La Fuente, P. D., Hawkins, N. J. and Cools, H. J. 2013. Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications. Chinese Society for Plant Pathology.

Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2013. Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations. Chinese Society for Plant Pathology.

Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Cools, H. J. 2013. Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays. Chinese Society for Plant Pathology.

Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases

C2 - Non-edited contributions to conferences

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.

Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

A - Papers appearing in refereed journals

Lawler, K., Hammond-Kosack, K. E., Brazma, A. and Coulson, R. M. R. 2013. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC Systems Biology. 7, p. 52. https://doi.org/10.1186/1752-0509-7-52

BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .

Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue

B - Book chapters etc edited externally

Urban, M. and Hammond-Kosack, K. E. 2013. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. in: Brown, D. W. and Proctor, R. H. (ed.) Fusarium: genomics, molecular and cellular biology Caister Academic Press, Norwich, Norfolk. pp. 43-79

Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase

A - Papers appearing in refereed journals

Parker, J. E., Warrilow, A. G. S., Cools, H. J., Fraaije, B. A., Lucas, J. A., Rigdova, K., Griffiths, W. J., Kelly, D. E. and Kelly, S. L. 2013. Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase. Applied and Environmental Microbiology. 79, pp. 1639-1645. https://doi.org/10.1128/AEM.03246-12

Future IPM in Europe - the PURE project's first stakeholder congress

G - Articles in popular magazines and other technical publications

West, J. S. 2013. Future IPM in Europe - the PURE project's first stakeholder congress. Outlooks on Pest Management. 24(3), p. 128. https://doi.org/10.1564/v24_jun_09

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

A - Papers appearing in refereed journals

Lysenko, A., Urban, M., Bennett, L., Tsoka, S., Janowska-Sejda, E., Rawlings, C. J., Hammond-Kosack, K. E. and Saqi, M. 2013. Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PLOS ONE. 8, p. e67926. https://doi.org/10.1371/journal.pone.0067926

Food security: a systems approach. White paper presented at EU Science: Global Challenges and Global Collaboration, Brussels, 6 March 2013

G - Articles in popular magazines and other technical publications

Mcmurray, G., Arruda, C., Britton, D., Eidenberger, T., Evans, S., Gibney, M., Mccarthy, U., Moran, L., Opara, L., Saner, S. and West, J. S. 2013. Food security: a systems approach. White paper presented at EU Science: Global Challenges and Global Collaboration, Brussels, 6 March 2013.

Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes

C2 - Non-edited contributions to conferences

Urban, M., Antoniw, J. F., Martins, N., Lysenko, A., Grzebyta, J., Janowska-Sedja, E., Saqi, M. and Hammond-Kosack, K. E. 2013. Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 177

Exploring the metabolome of cereal infecting fusaria

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Lowe, R. G. T., Canning, G., Urban, M., Beale, M. H. and Ward, J. L. 2013. Exploring the metabolome of cereal infecting fusaria. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 21

Characterisation of stuA homologue in Fusarium culmorum

C2 - Non-edited contributions to conferences

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hammond-Kosack, K. E., Hoffmann, L., Beyer, M. and Migheli, Q. 2013. Characterisation of stuA homologue in Fusarium culmorum. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 185

FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner

A - Papers appearing in refereed journals

Pasquali, M., Spanu, F., Scherm, B., Balmas, V., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2013. FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner. PLOS ONE. 8, p. e57429 (14pp). https://doi.org/10.1371/journal.pone.0057429

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use

A - Papers appearing in refereed journals

Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., Freeman, S., Gagkaeva, T., Glenn, A. E., Gordon, T. R., Gregory, N. F. and Hammond-Kosack, K. E. 2013. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. 103 (5), pp. 400-408. https://doi.org/10.1094/PHYTO-07-12-0150-LE

Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function

A - Papers appearing in refereed journals

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytologist. 198 (3), pp. 821-835. https://doi.org/10.1111/nph.12193

Development of the Miniature Virtual Impactor - MVI - for long-term and automated air sampling to detect plant pathogen spores

C2 - Non-edited contributions to conferences

West, J. S., Canning, G., Heard, S. and Wili, S. G. 2013. Development of the Miniature Virtual Impactor - MVI - for long-term and automated air sampling to detect plant pathogen spores. Abstracts EU PURE Project Conference on Future IPM in Europe, Riva del Garda, 19-21 March 2013 .

Exploitation of genomics in fungicide research: current status and future perspectives

A - Papers appearing in refereed journals

Cools, H. J. and Hammond-Kosack, K. E. 2013. Exploitation of genomics in fungicide research: current status and future perspectives. Molecular Plant Pathology. 14 (2), pp. 197-210. https://doi.org/10.1111/mpp.12001

Update on mechanisms of azole resistance in Mycosphaerella graminicola and implications for future control

A - Papers appearing in refereed journals

Cools, H. J. and Fraaije, B. A. 2013. Update on mechanisms of azole resistance in Mycosphaerella graminicola and implications for future control. Pest Management Science. 69 (2), pp. 150-155. https://doi.org/10.1002/ps.3348

Role of inoculum sources in Rhynchosporium population dynamics and epidemics on barley

A - Papers appearing in refereed journals

Fitt, B. D. L., Atkins, S. D., Fraaije, B. A., Lucas, J. A., Newton, A. C., Looseley, M., Werner, P., Harrap, D., Ashworth, M., Southgate, J., Phillips, H. and Gilchrist, A. 2012. Role of inoculum sources in Rhynchosporium population dynamics and epidemics on barley. HGCA Project Report. 486.

Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum

B - Book chapters etc edited externally

Bennett, L., Lysenko, A., Papageorgiou, L. G., Urban, M., Hammond-Kosack, K. E., Rawlings, C. J., Saqi, M. and Tsoka, S. 2012. Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum. in: Gilbert, D. and Heiner, M. (ed.) Computational Methods in Systems Biology Springer-Verlag Berlin Heidelberg.

Investigations into the molecular mechanisms responsible for the decline in sensitivity to DMI fungicides in Mycosphaerella graminicola populations

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Cools, H. J. 2012. Investigations into the molecular mechanisms responsible for the decline in sensitivity to DMI fungicides in Mycosphaerella graminicola populations. American Phytopathological Society (APS).

Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae

C2 - Non-edited contributions to conferences

Carter, H. E., Cools, H. J., West, J. S., Shaw, M., Mehl, A. and Fraaije, B. A. 2012. Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae. American Phytopathological Society (APS).

Detection and quantification of airborne inoculum of Pyrenopeziza brassicae in Polish and UK winter oilseed rape crops by real-time PCR assays

A - Papers appearing in refereed journals

Karolewski, Z., Kaczmarek, J., Jedryczka, M., Cools, H. J., Fraaije, B. A., Lucas, J. A. and Latunde-Dada, A. O. 2012. Detection and quantification of airborne inoculum of Pyrenopeziza brassicae in Polish and UK winter oilseed rape crops by real-time PCR assays. Grana. 51, pp. 270-279. https://doi.org/10.1080/00173134.2011.653401

Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species

C2 - Non-edited contributions to conferences

Lucas, J. A., Amaral, A., Hammond-Kosack, K. E. and Rudd, J. J. 2012. Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species. Abstracts 4th Brazilian Congress of Biotechnology, Guaruja, 28 October - 1 November 2012 . pp. 30

New air sampler developed to study plant pathogen spores

G - Articles in popular magazines and other technical publications

Wili, S. G. and West, J. S. 2012. New air sampler developed to study plant pathogen spores. PURE Newsletter.

Aerobiology and air sampling in plant pathology

C1 - Edited contributions to conferences/learned societies

West, J. S. 2012. Aerobiology and air sampling in plant pathology.

Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot

C2 - Non-edited contributions to conferences

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2012. Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 98

Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group

G - Articles in popular magazines and other technical publications

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2012. Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group. Nature Reviews Drug Discovery. 10, p. 661. https://doi.org/10.1038/nrd3503-c2

Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum

C2 - Non-edited contributions to conferences

Martins, N. F. and Hammond-Kosack, K. E. 2012. Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum. Abstracts 1st Meeting EMBRAPA Researchers and Engineers in Europe, Montpellier, 18 October 2012 .

Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein

A - Papers appearing in refereed journals

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2012. Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein. Plant Physiology. 160, pp. 582-590. https://doi.org/10.1104/pp.112.203489

Phytopath - A new bioinformatics resource for plant pathogens

C2 - Non-edited contributions to conferences

Pedro, H., Grzebyta, J., Urban, M., Saqi, M., Kerhornou, A., Maheswari, U., Kersey, P. and Hammond-Kosack, K. E. 2012. Phytopath - A new bioinformatics resource for plant pathogens. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 138

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp). https://doi.org/10.1371/journal.pone.0049904

A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola. Abstracts IS-MPMI 2012 15th International Congress, Kyoto, 29 July - 2 August 2012 . pp. 104

Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Lee, W-S., Marshall, R., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2012. Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola. Abstracts Plant Biology Congress, Freiburg, 29 July-3 August 2012 . pp. 709

Phytopath: new pathogen resource launched

G - Articles in popular magazines and other technical publications

Kersey, P., Pedro, H., Maheswari, U., Hammond-Kosack, K. E., Urban, M., Saqi, M. and Grzebyta, J. 2012. Phytopath: new pathogen resource launched. GARNish Newsletter. 17, p. 8.

Effects of climate change on sugar beet and arable crop diseases in the UK

G - Articles in popular magazines and other technical publications

West, J. S. and Stevens, M. 2012. Effects of climate change on sugar beet and arable crop diseases in the UK. British Sugar Beet Review. 80(1), pp. 24-27.

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Rank Prize Funds Mini-Symposium on New Horizons in Plant-Pathogen Interactions, Grasmere, 30 April-3 May 2012 .

Overexpression of the sterol 14α-demethylase gene (MgCYP51) in Mycosphaerella graminicola isolates confers a novel azole fungicide sensitivity phenotype.

A - Papers appearing in refereed journals

Cools, H. J., Bayon, C., Atkins, S., Lucas, J. A. and Fraaije, B. A. 2012. Overexpression of the sterol 14α-demethylase gene (MgCYP51) in Mycosphaerella graminicola isolates confers a novel azole fungicide sensitivity phenotype. Pest Management Science. 68 (7), pp. 1034-1040. https://doi.org/10.1002/ps.3263

Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes

C2 - Non-edited contributions to conferences

Oliver, R. P., Williams, A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes. Abstracts Dothideomycetes Satellite Meeting, Marburg, 3 April 2012 .

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Molecular Biology of Plant Pathogens, Reading, 16-17 April 2012 .

Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Brown, N. A., Urban, M. and Antoniw, J. F. 2012. Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 74

Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2012. Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 233

The top 10 fungal pathogens in molecular plant pathology

A - Papers appearing in refereed journals

Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G. D. 2012. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13 (4), pp. 414-430. https://doi.org/10.1111/j.1364-3703.2011.00783.x

Effects of R gene-mediated resistance in Brassica napus (oilseed rape) on asexual and sexual sporulation of Pyrenopeziza brassicae (light leaf spot)

A - Papers appearing in refereed journals

Boys, E. F., Roques, S. E., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2012. Effects of R gene-mediated resistance in Brassica napus (oilseed rape) on asexual and sexual sporulation of Pyrenopeziza brassicae (light leaf spot). Plant Pathology. 61 (3), pp. 543-554. https://doi.org/10.1111/j.1365-3059.2011.02529.x

Comparative biology of different plant pathogens to estimate effects of climate change on crop diseases in Europe

A - Papers appearing in refereed journals

West, J. S., Townsend, J. A., Stevens, M. and Fitt, B. D. L. 2012. Comparative biology of different plant pathogens to estimate effects of climate change on crop diseases in Europe. European Journal of Plant Pathology. 133, pp. 315-331. https://doi.org/10.1007/s10658-011-9932-x

The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum

A - Papers appearing in refereed journals

Merhej, J., Urban, M., Dufresne, M., Hammond-Kosack, K. E., Richard-Forget, F. and Barreau, C. 2012. The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Molecular Plant Pathology. 13 (4), pp. 363-374. https://doi.org/10.1111/j.1364-3703.2011.00755.x

A comparison of GHG emissions from UK field crop production under selected arable systems with reference to disease control

A - Papers appearing in refereed journals

Carlton, R. R., West, J. S., Smith, P. and Fitt, B. D. L. 2012. A comparison of GHG emissions from UK field crop production under selected arable systems with reference to disease control. European Journal of Plant Pathology. 133, pp. 333-351. https://doi.org/10.1007/s10658-012-9961-0

The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis

A - Papers appearing in refereed journals

Brown, N. A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLOS ONE. 7, p. e33731 (14pp). https://doi.org/10.1371/journal.pone.0033731

Confidential report to Syngenta, January 2012

D1 - Technical reports: non-confidential

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2012. Confidential report to Syngenta, January 2012.

Genetic basis of control of Rynchosporium secalis infection and symptom expression in barley

A - Papers appearing in refereed journals

Looseley, M. E., Newton, A. C., Atkins, S. D., Fitt, B. D. L., Fraaije, B. A., Thomas, W. T. B., Keith, R., Macaulay, M., Lynott, J. and Harrap, D. 2012. Genetic basis of control of Rynchosporium secalis infection and symptom expression in barley. Euphytica. 184, pp. 47-56. https://doi.org/10.1007/s10681-011-0485-z

Risk assessment studies on succinate dehydrogenase inhibitors, the new weapons in the battle to control Septoria leaf blotch in wheat

A - Papers appearing in refereed journals

Fraaije, B. A., Bayon, C., Atkins, S., Cools, H. J., Lucas, J. A. and Fraaije, M. W. 2012. Risk assessment studies on succinate dehydrogenase inhibitors, the new weapons in the battle to control Septoria leaf blotch in wheat. Molecular Plant Pathology. 13 (3), pp. 263-275. https://doi.org/10.1111/j.1364-3703.2011.00746.x

Resistance to azole fungicides in Mycosphaerella graminicola: mechanisms and management

B - Book chapters etc edited externally

Cools, H. J. and Fraaije, B. A. 2012. Resistance to azole fungicides in Mycosphaerella graminicola: mechanisms and management. in: Thind, T. S. (ed.) Fungicide resistance in crop protection: risk and management CABI International, Wallingford, Oxon (CABI). pp. 64-77

Impacts of changing climate and agronomic factors on fusarium ear blight of wheat in the UK

A - Papers appearing in refereed journals

West, J. S., Holdgate, S., Townsend, J. A., Edwards, S. G., Jennings, P. and Fitt, B. D. L. 2012. Impacts of changing climate and agronomic factors on fusarium ear blight of wheat in the UK. Fungal Ecology. 5 (1), pp. 53-61. https://doi.org/10.1016/j.funeco.2011.03.003

The induction of mycotoxins by trichothecene producing Fusarium species

B - Book chapters etc edited externally

Lowe, R., Jubault, M., Canning, G., Urban, M. and Hammond-Kosack, K. E. 2012. The induction of mycotoxins by trichothecene producing Fusarium species. in: Thomma, B. P. H. J. and Bolton, M. D. (ed.) Plant fungal pathogens: methods and protocols (Methods in Molecular Biology, Vol 835) Springer, Berlin. pp. 439-455

Development of QoI resistance in Ramularia collo-cygni populations

C1 - Edited contributions to conferences/learned societies

Fountaine, J. M., Burnett, F. J. and Fraaije, B. A. 2011. Development of QoI resistance in Ramularia collo-cygni populations. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 199-202

Molecular mechanisms of altered triazole sensitivity in Rhynchosporium secalis

C1 - Edited contributions to conferences/learned societies

Hawkins, N. J., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2011. Molecular mechanisms of altered triazole sensitivity in Rhynchosporium secalis. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschwieg. pp. 129-134

Temporal and spatial transgene expression using a heat-shock promoter in transgenic wheat

C1 - Edited contributions to conferences/learned societies

Freeman, J., Sparks, C. A., West, J. S., Shewry, P. R. and Jones, H. D. 2011. Temporal and spatial transgene expression using a heat-shock promoter in transgenic wheat. GM Crops: from Basic Research to Application. Aspects of Applied Biology 110 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 85-91

The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals

C1 - Edited contributions to conferences/learned societies

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2011. The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 413-416

Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase variants resistant to azole fungicides

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Parker, J. E., Kelly, D. E., Lucas, J. A., Kelly, S. L. and Fraaije, B. A. 2011. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase variants resistant to azole fungicides. Dehne, H. W. (ed.) Modern fungicides and antifungal compounds VI . DPG, Braunschweig. pp. 123-128

Both mating types are present in Rhynchosporium commune, R. agropyri and R. secalis populations

C2 - Non-edited contributions to conferences

King, K. M., West, J. S., Stefansson, T. S., Mcdonald, B. A., Knogge, W., Dyer, P. S. and Fitt, B. D. L. 2011. Both mating types are present in Rhynchosporium commune, R. agropyri and R. secalis populations. Abstracts 4th International Workshop on Barley Leaf Blights, Dundee, 27-29 June 2011 .

Development of typical and atypical Rynchosporium lesions on different grass hosts

C1 - Edited contributions to conferences/learned societies

King, K. M., West, J. S., Dyer, P. S. and Fitt, B. D. L. 2011. Development of typical and atypical Rynchosporium lesions on different grass hosts. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 1-6

Virus-induced gene silencing system for functional genomics studies in wheat and related cereals

C2 - Non-edited contributions to conferences

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14

WGIN Stakeholder's Newsletter [November 2011]

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2011. WGIN Stakeholder's Newsletter [November 2011]. WGIN Stakeholders' Newsletter. November.

Reducing take-all inoculum build-up during a first wheat crop

C2 - Non-edited contributions to conferences

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).

OmniMapFree a unified tool to visualise and explore sequenced genomes

A - Papers appearing in refereed journals

Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp). https://doi.org/10.1186/1471-2105-12-447

Optical sensing of symptoms for early detection of crop disease

C2 - Non-edited contributions to conferences

West, J. S. 2011. Optical sensing of symptoms for early detection of crop disease. Abstracts One Day Workshop on New Technologies for Early Pest and Disease Detection, Marston, 12 October 2011 .

Potential for air sampling for early detection of crop disease

C2 - Non-edited contributions to conferences

West, J. S. 2011. Potential for air sampling for early detection of crop disease. Abstracts One Day Workshop on New Technologies for Early Pest and Disease Detection, Marston, 12 October 2011 .

Climate change and arable crop disease control: mitigation and adaptation

C1 - Edited contributions to conferences/learned societies

Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Madgwick, J. W., Jeger, M. J., Townsend, J. A., Turner, J. A. and West, J. S. 2011. Climate change and arable crop disease control: mitigation and adaptation. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds VI: Proceedings 16th Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2010 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 17-26

Characterisation of the Fusarium graminearum-wheat floral interaction

A - Papers appearing in refereed journals

Brown, N. A., Bass, C. G., Baldwin, T. K., Chen, Huaigu, Massot, F., Carion, P. W. C., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2011. Characterisation of the Fusarium graminearum-wheat floral interaction. Journal of Pathogens. 2011, p. 626345. https://doi.org/10.4061/2011/626345

Minimum information about a bioactive entity (MIABE)

A - Papers appearing in refereed journals

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2011. Minimum information about a bioactive entity (MIABE). Nature Reviews Drug Discovery. 10, pp. 661-669. https://doi.org/10.1038/nrd3503

Disease control on UK winter oilseed rape contributes to climate change mitigation

C2 - Non-edited contributions to conferences

Mahmuti, M., West, J. S., Watts, J., Gladders, P., Hughes, D. J. and Fitt, B. D. L. 2011. Disease control on UK winter oilseed rape contributes to climate change mitigation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1330-1333

Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production

A - Papers appearing in refereed journals

Hughes, D. J., West, J. S., Atkins, S. D., Gladders, P., Jeger, M. J. and Fitt, B. D. L. 2011. Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production. Pest Management Science. 67 (9), pp. 1082-1092. https://doi.org/10.1002/ps.2151

Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape

C2 - Non-edited contributions to conferences

Huang, Y-J., Balesdent, M., Van De Wouw, A., Stonard, J., Evans, N., West, J. S., Rouxel, T. and Fitt, B. D. L. 2011. Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1181-1184

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

A - Papers appearing in refereed journals

Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Evans, N., Huang, Y-J., West, J. S. and Gladders, P. 2011. Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1226-1229

Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation

C2 - Non-edited contributions to conferences

Boys, E. F., Roques, S., West, J. S., Werner, C. P., King, G. J., Dyer, P. S., Hughes, D. J. and Fitt, B. D. L. 2011. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 .

The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola)

C2 - Non-edited contributions to conferences

West, J. S. 2011. The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola). Abstracts 2nd Congreso Argentino de Fitopatologia, Mar del Plata, 1-3 June 2011 . pp. 11-13

Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum

A - Papers appearing in refereed journals

Rogers, S. L., Atkins, S. D. and West, J. S. 2011. Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum . Plant Pathology. 60 (4), p. 800. https://doi.org/10.1111/j.1365-3059.2011.02447.x

Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola

A - Papers appearing in refereed journals

Mullins, J. G. L., Parker, J. E., Cools, H. J., Togawa, R. C., Lucas, J. A., Fraaije, B. A., Kelly, D. E. and Kelly, S. L. 2011. Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola. PLOS ONE. 6, p. e20973. https://doi.org/10.1371/journal.pone.0020973

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

A - Papers appearing in refereed journals

Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat

A - Papers appearing in refereed journals

Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347

Infection of the wheat ear by the fungus Fusarium culmorum

C2 - Non-edited contributions to conferences

Van De Meene, A., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2011. Infection of the wheat ear by the fungus Fusarium culmorum. Abstracts Botanical Microscopy Conference, Wageningen, 16-21 April 2011 .

Impact of recently emerged sterol 14alpha-demethylase (CYP51) variants of Mycosphaerella graminicola on azole fungicide sensitivity

A - Papers appearing in refereed journals

Cools, H. J., Mullins, J. G. L., Fraaije, B. A., Parker, J. E., Kelly, D. E., Lucas, J. A. and Kelly, S. L. 2011. Impact of recently emerged sterol 14alpha-demethylase (CYP51) variants of Mycosphaerella graminicola on azole fungicide sensitivity. Applied and Environmental Microbiology. 77, pp. 3830-3837. https://doi.org/10.1128/AEM.00027-11

A new approach to reduce the risk of Take-all disease

G - Articles in popular magazines and other technical publications

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.

Derivation and testing of a model to predict selection for fungicide resistance

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2011. Derivation and testing of a model to predict selection for fungicide resistance. Plant Pathology. 60 (2), pp. 304-313. https://doi.org/10.1111/j.1365-3059.2010.02380.x

Erratum: The impact of climate change on disease constraints on production of oilseed rape

A - Papers appearing in refereed journals

Evans, N., Butterworth, M. H., Baierl, A., Semenov, M. A., West, J. S., Barnes, A., Moran, D. and Fitt, B. D. L. 2011. Erratum: The impact of climate change on disease constraints on production of oilseed rape. Food Security. 3 (1), pp. 117-120. https://doi.org/10.1007/s12571-010-0105-0

Intelligent multi-sensor system for the detection and treatment of fungal diseases in arable crops

A - Papers appearing in refereed journals

Moshou, D., Bravo, C., Oberti, R., West, J. S., Ramon, H., Vougioukas, S. and Bochtis, D. 2011. Intelligent multi-sensor system for the detection and treatment of fungal diseases in arable crops. Biosystems Engineering. 108, pp. 311-321. https://doi.org/10.1016/j.biosystemseng.2011.01.003

Impacts of climate change on wheat anthesis and fusarium ear blight in the UK

A - Papers appearing in refereed journals

Madgwick, J. W., West, J. S., Wright, R. P., Semenov, M. A., Townsend, J. A., Turner, J. A. and Fitt, B. D. L. 2011. Impacts of climate change on wheat anthesis and fusarium ear blight in the UK. European Journal of Plant Pathology. 130 (1), pp. 117-131. https://doi.org/10.1007/s10658-010-9739-1

Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop

A - Papers appearing in refereed journals

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206. https://doi.org/10.1111/j.1365-3059.2010.02375.x

Arable crop disease control, climate change and food security

C1 - Edited contributions to conferences/learned societies

Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Jeger, M. J., Turner, J. A. and West, J. S. 2011. Arable crop disease control, climate change and food security. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 161-169

The unseen threat of symptomless Fusarium wheat ear infection

C1 - Edited contributions to conferences/learned societies

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2011. The unseen threat of symptomless Fusarium wheat ear infection. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 143-149

Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment

A - Papers appearing in refereed journals

Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x

Mechanism of binding of prothioconazole to Mycosphaerella graminicola CYP51 differs from that of other azole antifungals

A - Papers appearing in refereed journals

Parker, J. E., Warrilow, A. G. S., Cools, H. J., Martel, C. M., Nes, W. D., Fraaije, B. A., Lucas, J. A., Kelly, D. E. and Kelly, S. L. 2011. Mechanism of binding of prothioconazole to Mycosphaerella graminicola CYP51 differs from that of other azole antifungals. Applied and Environmental Microbiology. 77, pp. 1460-1465. https://doi.org/10.1128/AEM.01332-10

The use of a CYP51C gene based on PCR-RFLP assay for simultaneous detection and identification of Fusarium avenaceum and F. tricinctum in wheat

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Atkins, S. L. and Fraaije, B. A. 2011. The use of a CYP51C gene based on PCR-RFLP assay for simultaneous detection and identification of Fusarium avenaceum and F. tricinctum in wheat. International Journal of Food Microbiology. 145, pp. 370-374. https://doi.org/10.1016/j.ijfoodmicro.2011.01.011

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves

A - Papers appearing in refereed journals

Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71. https://doi.org/10.1016/j.jplph.2010.05.024

Impacts of changing air composition on severity of arable crop disease epidemics

A - Papers appearing in refereed journals

Fitt, B. D. L., Fraaije, B. A., Chandramohan, P. and Shaw, M. W. 2011. Impacts of changing air composition on severity of arable crop disease epidemics. Plant Pathology. 60 (1), pp. 44-53. https://doi.org/10.1111/j.1365-3059.2010.02413.x

Investigating altered triazole sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. D., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2010. Investigating altered triazole sensitivity in Rhynchosporium secalis. American Phytopathological Society (APS).

The CYP51C gene, a novel marker for phylogenetic analysis of Fusarium species

C2 - Non-edited contributions to conferences

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a novel marker for phylogenetic analysis of Fusarium species.

Succinate dehydrogenase inhibitor resistance risk assessment studies on Mycosphaerella graminicola the causal agent of septoria leaf blotch

C2 - Non-edited contributions to conferences

Bayon, C., Fraaije, M. W., Cools, H. J., Rogers, S. L., Lucas, J. A. and Fraaije, B. A. 2010. Succinate dehydrogenase inhibitor resistance risk assessment studies on Mycosphaerella graminicola the causal agent of septoria leaf blotch.

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

Derivation and validation of a model to predict selection for fungicide resistance

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2010. Derivation and validation of a model to predict selection for fungicide resistance.

The unseen threat to UK wheat production from Fusarium ear blight

C2 - Non-edited contributions to conferences

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. The unseen threat to UK wheat production from Fusarium ear blight. Abstracts CropWorld, London, 1-3 November 2010 .

Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight. Abstracts 9th International Mycological Congress: the Biology of Fungi, Edinburgh, 1-6 August 2010 .

A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp

A - Papers appearing in refereed journals

Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions - MPMI. 23 (12), pp. 1605-1618. https://doi.org/10.1094/MPMI-04-10-0092

The CYP51C gene, a reliable marker to resolve interspecific phylogenetic relationships within the Fusarium species complex and a novel target for species-specific PCR

A - Papers appearing in refereed journals

Fernandez-Ortuno, D., Loza-Reyes, E., Atkins, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a reliable marker to resolve interspecific phylogenetic relationships within the Fusarium species complex and a novel target for species-specific PCR. International Journal of Food Microbiology. 144, pp. 301-309. https://doi.org/10.1016/j.ijfoodmicro.2010.10.013

The Fusaria

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2010. The Fusaria.

Detection of fungal diseases optically and pathogen inoculum by air sampling

B - Book chapters etc edited externally

West, J. S., Bravo, C., Oberti, R., Moshou, D., Ramon, H. and McCartney, H. A. 2010. Detection of fungal diseases optically and pathogen inoculum by air sampling. in: Sikora, R. A., Oerke, E-C., Menz, G. and Gerhards, R. (ed.) Precision crop protection - the challenge and use of heterogeneity Springer, Berlin. pp. 135-149

Prothioconazole binds to Mycosphaerella graminicola CYP51 by a different mechanism compared to other azole antifungals

C2 - Non-edited contributions to conferences

Parker, J. E., Warrilow, A., Cools, H. J., Martel, C. M., Nes, W. D., Fraaije, B. A., Lucas, J. A., Kelly, D. E. and Kelly, S. L. 2010. Prothioconazole binds to Mycosphaerella graminicola CYP51 by a different mechanism compared to other azole antifungals. Abstracts 10th International Symposium on Cytochrome P450 Biodiversity and Biotechnology, Woods Hole, 3-7 October 2010 .

CYP51 paralogues and azole fungicide sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. J., Cools, H. J., Sierotzki, H., Shaw, M. and Fraaije, B. A. 2010. CYP51 paralogues and azole fungicide sensitivity in Rhynchosporium secalis. Abstracts 10th International Symposium on Cytochrome P450 Biodiversity and Biotechnology, Woods Hole, 3-7 October 2010 .

Determining frequencies of avirulent alleles in airborne Leptosphaeria maculans inoculum using quantitative PCR

A - Papers appearing in refereed journals

Van De Wouw, A. P., Stonard, J. F., Howlett, B. J., West, J. S., Fitt, B. D. L. and Atkins, S. D. 2010. Determining frequencies of avirulent alleles in airborne Leptosphaeria maculans inoculum using quantitative PCR. Plant Pathology. 59 (5), pp. 809-818. https://doi.org/10.1111/j.1365-3059.2010.02311.x

The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears

A - Papers appearing in refereed journals

Brown, N. A., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2010. The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biology. 114 (7), pp. 555-571. https://doi.org/10.1016/j.funbio.2010.04.006

A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum

A - Papers appearing in refereed journals

Baldwin, T. K., Gaffoor, I., Antoniw, J. F., Andries, C., Guenther, J., Urban, M., Hallen-Adams, H. E., Pitkin, J., Hammond-Kosack, K. E. and Trail, F. 2010. A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Molecular Plant-Microbe Interactions - MPMI. 23 (8), pp. 1083-1096. https://doi.org/10.1094/MPMI-23-8-1083

Molecular mechanisms of altered fungicide sensitivity in Rhynchosporium secalis

C2 - Non-edited contributions to conferences

Hawkins, N. D., Cools, H. J., Shaw, M. W., Sierotzki, H. and Fraaije, B. A. 2010. Molecular mechanisms of altered fungicide sensitivity in Rhynchosporium secalis. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 50

The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .

Evolutionary bi-stability in pathogen transmission mode

A - Papers appearing in refereed journals

Van Den Bosch, F., Fraaije, B. A., Van Den Berg, F. and Shaw, M. W. 2010. Evolutionary bi-stability in pathogen transmission mode. Proceedings of the Royal Society of London Series B Biological Sciences. 277, pp. 1735-1742. https://doi.org/10.1098/rspb.2009.2211

Effects of DMI fungicides on selection of CYP51 variants in UK populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A., Rogers, S., Bayon, C., Cools, H. J. and Lucas, J. A. 2010. Effects of DMI fungicides on selection of CYP51 variants in UK populations of Mycosphaerella graminicola. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 84

Development of QO1 resistance in Ramularia collocygni populations

C2 - Non-edited contributions to conferences

Fountaine, J. M., Burnett, F. J. and Fraaije, B. A. 2010. Development of QO1 resistance in Ramularia collocygni populations. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 136

Climate change and arable crop disease control: mitigation and adaptation

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Madgwick, J. W., Jeger, J., Townsend, J. A., Turner, J. A. and West, J. S. 2010. Climate change and arable crop disease control: mitigation and adaptation. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 18

The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals

C2 - Non-edited contributions to conferences

Fernandez-Ortuno, D., Loza-Reyes, E., Rogers, S. L. and Fraaije, B. A. 2010. The CYP51C gene, a novel and useful phylogenetic marker to distinguish different Fusarium species on cereals. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 196

The impact of climate change on disease constraints on production of oilseed rape

A - Papers appearing in refereed journals

Evans, N., Butterworth, M. H., Baierl, A., Semenov, M. A., West, J. S., Barnes, A., Moran, D. and Fitt, B. D. L. 2010. The impact of climate change on disease constraints on production of oilseed rape. Food Security. 2 (2), pp. 143-156. https://doi.org/10.1007/s12571-010-0058-3

Heterologous expression of mutated eburicol 14alpha-demethylase (CYP51) proteins of Mycosphaerella graminicola to assess effects on azole fungicide sensitivity and intrinsic protein function

A - Papers appearing in refereed journals

Cools, H. J., Parker, J. E., Kelly, D. E., Lucas, J. A., Fraaije, B. A. and Kelly, S. L. 2010. Heterologous expression of mutated eburicol 14alpha-demethylase (CYP51) proteins of Mycosphaerella graminicola to assess effects on azole fungicide sensitivity and intrinsic protein function. Applied and Environmental Microbiology. 76, pp. 2866-2872. https://doi.org/10.1128/AEM.02158-09

Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Parker, J. E., Motteram, J., Kelly, D. E., Lucas, J. A., Rudd, J. J., Kelly, S. L. and Fraaije, B. A. 2010. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 .

A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation

A - Papers appearing in refereed journals

Baldwin, T. K., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2010. A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Molecular Plant-Microbe Interactions - MPMI. 23 (5), pp. 566-577. https://doi.org/10.1094/MPMI-23-5-0566

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

A - Papers appearing in refereed journals

Ma, L-J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W-B., Woloshuk, C., Xie, X., Xu, J-R., Antoniw, J. F., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P., Danchin, E. G. J., Diener, A., Gale, L. R. and Hammond-Kosack, K. E. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464, pp. 367-373. https://doi.org/10.1038/nature08850

The role of seeds and airborne inoculum in the initiation of leaf blotch (Rhynchosporium secalis) epidemics in winter barley

A - Papers appearing in refereed journals

Fountaine, J. M., Shaw, M. W., Ward, E. and Fraaije, B. A. 2010. The role of seeds and airborne inoculum in the initiation of leaf blotch (Rhynchosporium secalis) epidemics in winter barley. Plant Pathology. 59 (2), pp. 330-337. https://doi.org/10.1111/j.1365-3059.2009.02213.x

Use of QPCR techniques to predict light leaf spot resistance of oilseed rape varieties

C2 - Non-edited contributions to conferences

Booth, E. J., West, J. S., Fitt, B. D. L., Rodgers, S. L., White, Robin P., Todd, A. D., Latunde-Dada, A. O., Thomas, J. E. and Gladders, P. 2010. Use of QPCR techniques to predict light leaf spot resistance of oilseed rape varieties. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 87-90

Rynchosporium secalis: a historical perspective

C2 - Non-edited contributions to conferences

Atkins, S. D., King, K. M., Fraaije, B. A. and Newton, A. C. 2010. Rynchosporium secalis: a historical perspective. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 103-108

The epidemiological importance of asymptomatic infection of winter barley by Rhynchosporium secalis and its consequences for crop protection and breeding

C2 - Non-edited contributions to conferences

Atkins, S. D., Fitt, B. D. L., Fraaije, B. A., Harvey, S., Lynott, J. and Newton, A. C. 2010. The epidemiological importance of asymptomatic infection of winter barley by Rhynchosporium secalis and its consequences for crop protection and breeding. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 81-86

Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats

A - Papers appearing in refereed journals

Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009

Geographic variation in severity of phoma stem canker and Leptosphaeria maculans/L.biglobosa populations on UK winter oilseed rape (Brassica napus)

A - Papers appearing in refereed journals

Stonard, J. F., Latunde-Dada, A. O., Huang, Y-J., West, J. S., Evans, N. and Fitt, B. D. L. 2010. Geographic variation in severity of phoma stem canker and Leptosphaeria maculans/L.biglobosa populations on UK winter oilseed rape (Brassica napus). European Journal of Plant Pathology. 126, pp. 97-109. https://doi.org/10.1007/s10658-009-9525-0

North-South divide: contrasting impacts of climate change on crop yields in Scotland and England

A - Papers appearing in refereed journals

Butterworth, M. H., Semenov, M. A., Barnes, A., Moran, D., West, J. S. and Fitt, B. D. L. 2010. North-South divide: contrasting impacts of climate change on crop yields in Scotland and England. Journal of the Royal Society Interface. 7, pp. 123-130. https://doi.org/10.1098/rsif.2009.0111

Controlling crop disease to mitigate climate change

C1 - Edited contributions to conferences/learned societies

West, J. S., Mahmuti, M., Watts, J., Townsend, J. A., Gladders, P. and Fitt, B. D. L. 2009. Controlling crop disease to mitigate climate change. Measuring and Marketing the Environmental Costs and Benefits of Agricultural Practice. Aspects of Applied Biology 95 . pp. 25-31

Pest wars - press paper

C2 - Non-edited contributions to conferences

Lucas, J. A., Field, L. M., Cools, H. J. and Hammond-Kosack, K. E. 2009. Pest wars - press paper. Pest Wars: British Science Festival, Guildford, 8 September 2009 .

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Freeman, A., Desmouceaux, N., Urban, M. and Cuzick, A. 2009. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 .

Molecular and genetic studies on Fusarium Ear Blight disease of wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .

Determining frequencies of avirulent alleles in airborne inoculum of Leptosphaeria maculans using molecular assays

C2 - Non-edited contributions to conferences

Van De Wouw, A. P., Stonard, J. F., Atkins, S. D., Howlett, B. J., West, J. S. and Fitt, B. D. L. 2009. Determining frequencies of avirulent alleles in airborne inoculum of Leptosphaeria maculans using molecular assays. Proceedings 16th Australian Research Assembly on Brassicas, Ballarat, 14-16 September 2009 . pp. 150-153

North-south divide: contrasting impacts of climate change on crop yields in Scotland and England

C2 - Non-edited contributions to conferences

Butterworth, M. H., Semenov, M. A., Barnes, A., Moran, D., West, J. S. and Fitt, B. D. L. 2009. North-south divide: contrasting impacts of climate change on crop yields in Scotland and England. https://doi.org/10.1088/1755-1307/6/7/372051

The importance of weeds in the epidemiology of crop diseases

D1 - Technical reports: non-confidential

West, J. S. 2009. The importance of weeds in the epidemiology of crop diseases.

Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .

A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18

Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .

Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E., Urban, M., Franklin, J. F. and Taberer, R. 2009. Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research.

Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec

G - Articles in popular magazines and other technical publications

Walton, J. D., Avis, T. J., Alfano, J. R., Gijzen, M., Spanu, P., Hammond-Kosack, K. E. and Sanchez, M. 2009. Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec. Molecular Plant-Microbe Interactions - MPMI. 22 (12), pp. 1479-1483. https://doi.org/10.1094/MPMI-22-12-1479

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp). https://doi.org/10.1186/1471-2164-10-458

Controlling crop disease contributes to both food security and climate change mitigation

A - Papers appearing in refereed journals

Mahmuti, M., West, J. S., Watts, J., Gladders, P. and Fitt, B. D. L. 2009. Controlling crop disease contributes to both food security and climate change mitigation. International Journal of Agricultural Sustainability. 7, pp. 189-202. https://doi.org/10.3763/ijas.2009.0476

High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley

A - Papers appearing in refereed journals

Hofinger, B. J., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics. 119, pp. 851-865. https://doi.org/10.1007/s00122-009-1094-2

High resolution melting curve analysis for mutation detection in plants: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High resolution melting curve analysis for mutation detection in plants: a case study in barley. Abstracts Monogram Network Workshop, Bristol, 29 April-1 May 2009 . pp. 28

Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Kufner, I., Deller, S., Brunner, F., Hammond-Kosack, K. E., Nurnberger, T. and Rudd, J. J. 2009. Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Molecular Plant-Microbe Interactions - MPMI. 22 (7), pp. 790-799. https://doi.org/10.1094/MPMI-22-7-0790

Sterol content analysis suggests altered eburicol 14alpha-demethylase (CYP51) activity in isolates of Mycosphaerella graminicola adapted to azole fungicides

A - Papers appearing in refereed journals

Bean, T. P., Cools, H. J., Lucas, J. A., Hawkins, N. D., Ward, J. L., Shaw, M. W. and Fraaije, B. A. 2009. Sterol content analysis suggests altered eburicol 14alpha-demethylase (CYP51) activity in isolates of Mycosphaerella graminicola adapted to azole fungicides. FEMS Microbiology Letters. 296, pp. 266-273. https://doi.org/10.1111/j.1574-6968.2009.01645.x

Impact of proquinazid on appressorial development of the barley powdery mildew fungus Blumeria graminis f.sp hordei

A - Papers appearing in refereed journals

Gilbert, S. R., Cools, H. J., Fraaije, B. A., Bailey, A. M. and Lucas, J. A. 2009. Impact of proquinazid on appressorial development of the barley powdery mildew fungus Blumeria graminis f.sp hordei. Pesticide Biochemistry and Physiology. 94, pp. 127-132. https://doi.org/10.1016/j.pestbp.2009.04.011

Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues

A - Papers appearing in refereed journals

Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions - MPMI. 22 (5), pp. 560-574. https://doi.org/10.1094/MPMI-22-5-0560

Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR

A - Papers appearing in refereed journals

Rogers, S. L., Atkins, S. D. and West, J. S. 2009. Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR. Plant Pathology. 58 (2), pp. 324-331. https://doi.org/10.1111/j.1365-3059.2008.01945.x

Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers

A - Papers appearing in refereed journals

Cuzick, A., Maguire, K. and Hammond-Kosack, K. E. 2009. Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. New Phytologist. 181, pp. 901-912. https://doi.org/10.1111/j.1469-8137.2008.02712.x

Detection of airborne plant pathogens: halting epidemics before they start

G - Articles in popular magazines and other technical publications

West, J. S., Atkins, S. D. and Fitt, B. D. L. 2009. Detection of airborne plant pathogens: halting epidemics before they start. Outlooks on Pest Management. 20, pp. 11-14.

Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Gordon Research Conference on Cellular and Molecular Fungal Biology, Holderness, New Hampshire, 29 June - 4 July 2008 .

Genomic analysis of transcriptional regulators of Fusarium graminearum

C2 - Non-edited contributions to conferences

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Genomic analysis of transcriptional regulators of Fusarium graminearum.

Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains

C2 - Non-edited contributions to conferences

Urban, M., Lowe, R., Allwood, W., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2008. Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains.

Understanding fungicide mixtures to control Rhynchosporium in barley and minimise resistance shifts. HGCA Project Report No. 436

D1 - Technical reports: non-confidential

Oxley, S. J. P., Burnett, F., Hunter, E,. A., Fraaije, B. A., Cooke, L. R., Mercer, P. C. and Gilchrist, A. 2008. Understanding fungicide mixtures to control Rhynchosporium in barley and minimise resistance shifts. HGCA Project Report No. 436. Home Grown Cereals Authority (HGCA) London.

The final straw: crop archives and the recent history of cereal pathosystems

C1 - Edited contributions to conferences/learned societies

Lucas, J. A. and Fraaije, B. A. 2008. The final straw: crop archives and the recent history of cereal pathosystems. Jellis, G. and Edwards, C. (ed.) Cereal pathosystems: papers from BSPP Presidential Meeting, London, 16-17 December 2008 . Home Grown Cereals Authority (HGCA) London. pp. 103-115

Adaptation of Mycosphaerella graminicola populations to azole fungicides in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Cools, H. J., Motteram, J., Gilbert, S. R., Kim, S-H. and Lucas, J. A. 2008. Adaptation of Mycosphaerella graminicola populations to azole fungicides in the UK. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds V: Proceedings 15th International Reinhardsbrunn Symposium on Modern Fungicides and Antifungal Compounds, 2007 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 121-127

Re-contructing evolution of fungicide resistance and disease dynamics of cereal pathogens from crop archives

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2008. Re-contructing evolution of fungicide resistance and disease dynamics of cereal pathogens from crop archives.

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Testing of fungicide activity enhancers using Septoria leaf blotch as model. Confidential report to industrial sponsor

D1 - Technical reports: non-confidential

Bean, T. P. and Fraaije, B. A. 2008. Testing of fungicide activity enhancers using Septoria leaf blotch as model. Confidential report to industrial sponsor.

Expression of genes encoding efflux proteins in Mycosphaerella graminicola isolates with sensitive or reduced triazole sensitivity phenotypes

C1 - Edited contributions to conferences/learned societies

Bean, T. P., Cools, H. J., Lucas, J. A. and Fraaije, B. A. 2008. Expression of genes encoding efflux proteins in Mycosphaerella graminicola isolates with sensitive or reduced triazole sensitivity phenotypes. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds V: Proceedings 15th International Reinhardsbrunn Symposium on Modern Fungicides and Antifungal Compounds, 2007 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 93-99

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts BSPP Presidentail Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 11

Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX

C2 - Non-edited contributions to conferences

Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E. 2008. Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX.

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, 22 September 2008 .

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Asbtracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 . pp. PR1.24

Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor

D1 - Technical reports: non-confidential

Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor.

Components of resistance to diseases in winter oilseed rape cultivars: CORDISOR (HGCA Project Report No. 446)

D1 - Technical reports: non-confidential

West, J. S., Fitt, B. D. L., Rogers, S. L., White, Robin P., Todd, A. D., Latunde-Dada, A. O., Gladders, P., Thomas, J., Booth, E., Jennaway, R., Clarke, M., Padbury, N., Bowman, J., Nightingale, M., Werner, P. and Jellis, G. 2008. Components of resistance to diseases in winter oilseed rape cultivars: CORDISOR (HGCA Project Report No. 446). Home Grown Cereals Authority (HGCA) London.

A quantitative-PCR method to detect and quantify airborne ascospores of Sclerotinia sclerotiorum

C1 - Edited contributions to conferences/learned societies

Rogers, S. L., Atkins, S. D., Latunde-Dada, A. O., Stonard, J. F. and West, J. S. 2008. A quantitative-PCR method to detect and quantify airborne ascospores of Sclerotinia sclerotiorum. Applied Aspects of Aerobiology. Asepcts of Applied Biology 89 . pp. 77-79

Preharvest qPCR diagnostics for better management of phoma stem canker and light leaf spot in oilseed rape

C2 - Non-edited contributions to conferences

Latunde-Dada, A. O., Downes, K., Stonard, J. F., Rogers, S. L., West, J. S. and Fitt, B. D. L. 2008. Preharvest qPCR diagnostics for better management of phoma stem canker and light leaf spot in oilseed rape. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 .

How can molecular genetic informtion on plant pathogens benefit disease management?

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2008. How can molecular genetic informtion on plant pathogens benefit disease management? Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 5

Plant resistance signalling hijacked by a necrotrophic fungal pathogen

A - Papers appearing in refereed journals

Hammond-Kosack, K. E. and Rudd, J. J. 2008. Plant resistance signalling hijacked by a necrotrophic fungal pathogen. Plant Signaling and Behavior. 3, pp. 993-995.

Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts BSPP Preseidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 9

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 13

Asymptomatic infection of winter and spring barley by Rhynchosporium secalis: effects and implications for epidemiology and host resistance

C2 - Non-edited contributions to conferences

Atkins, S. D., Stonard, J. F., Fraaije, B. A., Lucas, J. A., Fitt, B. D. L. and Newton, A. C. 2008. Asymptomatic infection of winter and spring barley by Rhynchosporium secalis: effects and implications for epidemiology and host resistance. Abstracts 10th International Barley Genetics Symposium (IBGS), Alexandria, 5-10 April 2008 .

The dynamics of Rynchosporium secalis in winter and spring barley and the role of inoculum sources

C2 - Non-edited contributions to conferences

Atkins, S. D., Fraaije, B. A., Lucas, J. A. and Fitt, B. D. L. 2008. The dynamics of Rynchosporium secalis in winter and spring barley and the role of inoculum sources.

Detecting airborne inoculum to forecast arable crop diseases

A - Papers appearing in refereed journals

West, J. S., Atkins, S. D., McCartney, H. A. and Fitt, B. D. L. 2008. Detecting airborne inoculum to forecast arable crop diseases. Aspects of Applied Biology. 89, pp. 1-6.

Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease

G - Articles in popular magazines and other technical publications

Jing, H-C., Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease. RRA Newsletter. 27, pp. 3-4.

Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction

A - Papers appearing in refereed journals

Jing, H-C., Lovell, D. J., Gutteridge, R. J., Jenk, D., Kornyukhin, D., Mitrofanova, O., Kema, G. H. J. and Hammond-Kosack, K. E. 2008. Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytologist. 179, pp. 1121-1132. https://doi.org/10.1111/j.1469-8137.2008.02526.x

Take-all and the Wheat Genetic Improvement Network (WGIN)

G - Articles in popular magazines and other technical publications

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Take-all and the Wheat Genetic Improvement Network (WGIN). RRA Newsletter. 27, pp. 1-2.

Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5

G - Articles in popular magazines and other technical publications

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5. WGIN Stakeholders' Newsletter. October, pp. 1-4.

Phoma stem canker and light leaf spot on oilseed rape in a changing climate

C1 - Edited contributions to conferences/learned societies

Fitt, B. D. L., Evans, N., Gladders, P., Huang, Y-J. and West, J. S. 2008. Phoma stem canker and light leaf spot on oilseed rape in a changing climate. Effects of Climate Change on Plants: Implications for Agriculture. Aspects of Applied Biology 88 . pp. 143-145

Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Motteram, J., Pirie, E. J. and Hammond-Kosack, K. E. 2008. Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Quantitative measurements of CYP51 alterations in populations of Mycosphaerella graminicola using pyrosequencing

C2 - Non-edited contributions to conferences

Motteram, J., Cools, H. J., Gilbert, S. and Fraaije, B. A. 2008. Quantitative measurements of CYP51 alterations in populations of Mycosphaerella graminicola using pyrosequencing.

Investigating resistance mechanisms to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Investigating resistance mechanisms to furoviruses in wheat and barley. Abstracts 14th International Congress of Virology, Istanbul, 10-15 August 2008 .

Characterisation of resistance to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Zlatska, A., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Characterisation of resistance to furoviruses in wheat and barley. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 .

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Dispersal of airborne spores from plant pahtogenic fungi in cereals

C2 - Non-edited contributions to conferences

Havis, N., Fraaije, B. A. and Oxley, S. 2008. Dispersal of airborne spores from plant pahtogenic fungi in cereals.

Confidential report to Makhteshim Agan (UK) Ltd

D1 - Technical reports: non-confidential

Fraaije, B. A. 2008. Confidential report to Makhteshim Agan (UK) Ltd.

Demethylation inhibitor resistance in cereal pathogens and consequences of resistance management

C2 - Non-edited contributions to conferences

Fraaije, B. A., Cools, H. J., Motteram, J. and Lucas, J. A. 2008. Demethylation inhibitor resistance in cereal pathogens and consequences of resistance management.

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Molecular Biology of Plant Pathogens, Birnam, 17-19 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Characterisation of mechanisms correlated with reduced azole sensitivity in Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Bean, T. P. and Lucas, J. A. 2008. Characterisation of mechanisms correlated with reduced azole sensitivity in Mycosphaerella graminicola.

Impact of mutations in the CYP51 gene of Mycosphaerella graminicola on azole fungicide sensitivity and intrinsic protein function

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Fernandez-Ortuno, D., Bean, T. P. and Lucas, J. A. 2008. Impact of mutations in the CYP51 gene of Mycosphaerella graminicola on azole fungicide sensitivity and intrinsic protein function. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

PCR to predict risk of airborne disease

A - Papers appearing in refereed journals

West, J. S., Atkins, S. D., Emberlin, J. and Fitt, B. D. L. 2008. PCR to predict risk of airborne disease. Trends in Microbiology. 16, pp. 380-387. https://doi.org/10.1016/j.tim.2008.05.004

Data, not only in aerobiology: how normal is the normal distribution?

A - Papers appearing in refereed journals

Limpert, E., Burke, J., Galan, C., Del Mar Trigo, M., West, J. S. and Stahel, W. A. 2008. Data, not only in aerobiology: how normal is the normal distribution? Aerobiologia. 24, pp. 121-124. https://doi.org/10.1007/s10453-008-9092-4

Quantifying DNA of Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape tissues using QPCR

C2 - Non-edited contributions to conferences

West, J. S., Rogers, S. L., Latunde-Dada, A. O., Pirie, E. J., Stonard, J. F., Huang, Y. J., Atkins, S. D. and Fitt, B. D. L. 2008. Quantifying DNA of Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape tissues using QPCR.

Detection and monitoring of airborne pathogens by optical reflectance and air sampling

C2 - Non-edited contributions to conferences

West, J. S., Rogers, S. L., Atkins, S. D. and Fitt, B. D. L. 2008. Detection and monitoring of airborne pathogens by optical reflectance and air sampling.

Long-term dynamics in wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Shaw, M. W., Bearchell, S. J., Fitt, B. D. L. and Fraaije, B. A. 2008. Long-term dynamics in wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola.

Detection and quantification of airborne ascopores of Sclerotinia sclerotiorum by QPCR

C2 - Non-edited contributions to conferences

Rogers, S. L., Atkins, S. D., West, J. S. and Fitt, B. D. L. 2008. Detection and quantification of airborne ascopores of Sclerotinia sclerotiorum by QPCR.

Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley

A - Papers appearing in refereed journals

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Molecular Plant-Microbe Interactions - MPMI. 21 (9), pp. 1193-1204. https://doi.org/10.1094/MPMI-21-9-1193

Exploring resistance in wheat to Fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to Fusarium ear blight disease.

Exploring resistance in wheat to fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to fusarium ear blight disease. Abstracts 10th International Fusarium Workshop, Alghero, 30 August-2 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers

A - Papers appearing in refereed journals

Cuzick, A., Lee, S., Gezan, S. and Hammond-Kosack, K. E. 2008. NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. Molecular Plant Pathology. 9 (5), pp. 697-704. https://doi.org/10.1111/J.1364-3703.2008.00488.X

Molecular detection of airborne Sclerotinia sclerotiorum spores on Mexican crops

C2 - Non-edited contributions to conferences

Calderon-Ezquerro, C., Guerrero-Parra, H. A., Reyes-Montes, R., Toriello-Najera, C., West, J. S. and Atkins, J. 2008. Molecular detection of airborne Sclerotinia sclerotiorum spores on Mexican crops.

Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (winter oilseed rape)

C2 - Non-edited contributions to conferences

Boys, E. F., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2008. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (winter oilseed rape).

Investigating the phenotype of a major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus

C2 - Non-edited contributions to conferences

Boys, E. F., Reilly, K. H., West, J. S., Werner, C. P., Dyer, P. S. and Fitt, B. D. L. 2008. Investigating the phenotype of a major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus.

Phoma stem canker and light leaf spot on oilseed rape in a changing climate

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Evans, N., Gladders, P., Huang, Y. J. and West, J. S. 2008. Phoma stem canker and light leaf spot on oilseed rape in a changing climate. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 3

Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley. Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .

Forecasting oilseed rape diseases from airborne inoculum

C2 - Non-edited contributions to conferences

West, J. S., Atkins, S. D., Rogers, S. L. and Fitt, B. D. L. 2008. Forecasting oilseed rape diseases from airborne inoculum. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 4

Factors affecting canker and light leaf spot severity in oilseed rape

C2 - Non-edited contributions to conferences

West, J. S., Gladders, P., Booth, E., Thomas, J., Jennaway, R., Werner, P., Bowman, J., Nightingale, M., Padbury, N., Clarke, M., Rogers, S. L., Kenyon, D., Atkins, S. D., Boys, E. F., Huang, Y-J., Evans, N., Latunde-Dada, A. O., Li, Q. and Fitt, B. D. L. 2008. Factors affecting canker and light leaf spot severity in oilseed rape. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 16

Development of a quantitative-PCR method to understand the epidemiology of sclerotinia stem rot of oilseed rape

C2 - Non-edited contributions to conferences

Rogers, S. L., Atkins, S. D. and West, J. S. 2008. Development of a quantitative-PCR method to understand the epidemiology of sclerotinia stem rot of oilseed rape. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 .

Investigating the phenotype of major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus

C2 - Non-edited contributions to conferences

Boys, E. F., Reilly, K. H., West, J. S., Werner, C. P., Dyer, P. S. and Fitt, B. D. L. 2008. Investigating the phenotype of major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 .

The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola

A - Papers appearing in refereed journals

Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815. https://doi.org/10.1104/pp.108.119511

Resistance genes (R genes) in plants

B - Book chapters etc edited externally

Hammond-Kosack, K. E. and Kanyuka, K. 2008. Resistance genes (R genes) in plants. in: Encyclopedia of life sciences John Wiley & Sons Chichester, West Sussex.

Controlling Septoria: can azole fungicides be relied upon?

G - Articles in popular magazines and other technical publications

Fraaije, B. A., Cools, H. J., Clark, B. and Lucas, J. A. 2008. Controlling Septoria: can azole fungicides be relied upon? RRA Newsletter. 26, p. 3.

Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat

C2 - Non-edited contributions to conferences

Kanyuka, K. and Hammond-Kosack, K. E. 2008. Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat. Abstracts 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008 .

The infection biology of Fusarium graminearum single gene deletion strains

C2 - Non-edited contributions to conferences

Brown, N. A., Baldwin, T., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology of Fusarium graminearum single gene deletion strains. Abstracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 .

Are azole fungicides losing ground against Septoria wheat disease? Resistance mechanisms in Mycosphaerella graminicola

A - Papers appearing in refereed journals

Cools, H. J. and Fraaije, B. A. 2008. Are azole fungicides losing ground against Septoria wheat disease? Resistance mechanisms in Mycosphaerella graminicola. Pest Management Science. 64 (7), pp. 681-684. https://doi.org/10.1002/ps.1568

PHI-base update: additions to the pathogen-host interaction database

A - Papers appearing in refereed journals

Winnenburg, R., Urban, M., Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, C. J., Hammond-Kosack, K. E. and Kohler, J. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Research. 36, pp. D572-D576. https://doi.org/10.1093/nar/gkm858

Climate change set to worsen severity of stem canker

C2 - Non-edited contributions to conferences

West, J. S., Rogers, S., Gladders, P. and Fitt, B. D. L. 2008. Climate change set to worsen severity of stem canker. Abstracts HGCA R&D Conference on Arable Cropping in a Changing Climate, Belton Woods, 23-24 January 2008 . pp. 135

Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue

A - Papers appearing in refereed journals

Cuzick, A., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. New Phytologist. 177 (4), pp. 990-1000. https://doi.org/10.1111/j.1469-8137.2007.02333.x

Long-term relationships between environment and abundance of wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola

A - Papers appearing in refereed journals

Shaw, M. W., Bearchell, S. J., Fitt, B. D. L. and Fraaije, B. A. 2008. Long-term relationships between environment and abundance of wheat of Phaeosphaeria nodorum and Mycosphaerella graminicola. New Phytologist. 177 (1), pp. 229-238. https://doi.org/10.1111/j.1469-8137.2007.02236.x

Dispersal of fungal spores through the air

B - Book chapters etc edited externally

McCartney, H. A. and West, J. S. 2007. Dispersal of fungal spores through the air. in: Samson, R. A. and Dijksterhuis, J. (ed.) Food mycology: a multifaceted approach to fungi and food Boca Raton, Florida CRC Press. pp. 65-81

Molecular genetic and genomic analysis of wheat-pathogen interactions

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6)

G - Articles in popular magazines and other technical publications

Jing, H-C., Gutteridge, R. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6). WGIN Stakeholders' Newsletter. October, pp. 3-6.

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6

G - Articles in popular magazines and other technical publications

Jing, H-C. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6. Special WGIN Resources Newsletter. March 2007, pp. 2-6.

Wheat pathogens affecting yield and quality

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2007. Wheat pathogens affecting yield and quality. Abstracts China-UK Wheat Workshop, Beijing, 10-11 December 2007 . pp. 20-21

Molecular mechanisms associated with altered azole sensitivity in Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Bean, T. P., Motteram, J., Gilbert, S. R. and Fraaije, B. A. 2007. Molecular mechanisms associated with altered azole sensitivity in Mycosphaerella graminicola. Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 406-407

Can information on the mode of pathogen attack be used to formulate novel crop protection strategies?

C1 - Edited contributions to conferences/learned societies

Rudd, J. J., Jing, H-C. and Hammond-Kosack, K. E. 2007. Can information on the mode of pathogen attack be used to formulate novel crop protection strategies? Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 706-707

Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions

C2 - Non-edited contributions to conferences

Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Triticum monococcum as a reference species for wheat genetics and genomics

C2 - Non-edited contributions to conferences

Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

A re-emerging threat to wheat crops - Black Stem Rust

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2007. A re-emerging threat to wheat crops - Black Stem Rust. RRA Newsletter. Issue 24, p. 2.

Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant

C2 - Non-edited contributions to conferences

Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Urban, M., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2007. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 52

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Cuzick, A., Lee, S., Daudi, A., Bass, C. G., Maguire, K. and Urban, M. 2007. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 107-108

Evolution of fungicide resistance in UK populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2007. Evolution of fungicide resistance in UK populations of Mycosphaerella graminicola. Abstracts Resistance 2007, Harpenden, 16-18 April 2007 .

Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764. https://doi.org/10.1093/jxb/erm225

DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective

C2 - Non-edited contributions to conferences

Lowe, R., Allwood, J. W., Urban, M., Beale, M. H., Ward, J. L. and Hammond-Kosack, K. E. 2007. DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 64

Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms

C2 - Non-edited contributions to conferences

Jing, H-C. and Hammond-Kosack, K. E. 2007. Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 377-378

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Grain fungus genome published

G - Articles in popular magazines and other technical publications

Antoniw, J. F., Baldwin, T., Urban, M. and Hammond-Kosack, K. E. 2007. Grain fungus genome published. EPSO News. No. 3.

Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat

C2 - Non-edited contributions to conferences

Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 53

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

A - Papers appearing in refereed journals

Cuomo, C. A., Guldener, U., Xu, J-R., Trail, F., Turgeon, B. G., Di Pietro, A., Walton, J. D., Ma, L-J., Baker, S. E., Rep, M., Adam, G., Antoniw, J. F., Baldwin, T., Calvo, S., Chang, Y-L., Decaprio, D., Gale, L. R., Gnerre, S., Goswami, R. S., Hammond-Kosack, K. E., Harris, L. J., Hilburn, K., Kennell, J. C., Kroken, S., Magnuson, J. K., Mannhaupt, G., Mauceli, E., Mewes, H-W., Mitterbauer, R., Munsterkotter, M., Nelson, D., O'donnell, K., Ouellet, T., Qi, W., Quesneville, H., Roncero, M. I. G., Seong, K-Y., Tetko, I. V., Urban, M., Waalwijk, C., Ward, T. J., Yao, J., Birren, B. W. and Kistler, H. C. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science - AAAS. 317, pp. 1400-1402. https://doi.org/10.1126/science.1143708

Effects of a strobilurin-based spray programme on disease control, green leaf area, yield and development of fungicide-resistance in Mycosphaerella graminicola in Northern Ireland

A - Papers appearing in refereed journals

Mccartney, C., Mercer, P. C., Cooke, L. R. and Fraaije, B. A. 2007. Effects of a strobilurin-based spray programme on disease control, green leaf area, yield and development of fungicide-resistance in Mycosphaerella graminicola in Northern Ireland. Crop Protection. 26, pp. 1272-1280. https://doi.org/10.1016/j.cropro.2006.10.027

Identifying resistance to Fusarium Ear Blight in wheat

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2007. Identifying resistance to Fusarium Ear Blight in wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Exploring resistance to Fusarium ear blight

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2007. Exploring resistance to Fusarium ear blight. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

New methods to understand quantitative resistance to Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape

C2 - Non-edited contributions to conferences

Latunde-Dada, A. O., West, J. S., Measures, S., Huang, Y-J., Pirie, E. J. and Fitt, B. D. L. 2007. New methods to understand quantitative resistance to Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape. Abstracts 12th International Rapeseed Congress, Wuhan, 26-30 March 2007 .

Effects of temperature and rainfall on date of release of ascospores of Leptosphaeria maculans (phoma stem canker) from winter oilseed rape (Brassica napus) debris in the UK

A - Papers appearing in refereed journals

Huang, Y-J., Liu, Z., West, J. S., Todd, A. D., Hall, A. M. and Fitt, B. D. L. 2007. Effects of temperature and rainfall on date of release of ascospores of Leptosphaeria maculans (phoma stem canker) from winter oilseed rape (Brassica napus) debris in the UK. Annals of Applied Biology - AAB. 151 (1), pp. 99-111. https://doi.org/10.1111/j.1744-7348.2007.00157.x

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays

A - Papers appearing in refereed journals

Cools, H. J., Fraaije, B. A., Bean, T. P., Antoniw, J. F. and Lucas, J. A. 2007. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays. Molecular Plant Pathology. 8 (5), pp. 639-651. https://doi.org/10.1111/J.1364-3703.2007.00411.X

Resistance to infection by stealth: Brassica napus (winter oilseed rape) and Pyrenopeziza brassicae (light leaf spot)

A - Papers appearing in refereed journals

Boys, E. F., Roques, S. E., Ashby, A. M., Evans, N., Latunde-Dada, A. O., Thomas, J. E., West, J. S. and Fitt, B. D. L. 2007. Resistance to infection by stealth: Brassica napus (winter oilseed rape) and Pyrenopeziza brassicae (light leaf spot). European Journal of Plant Pathology. 118, pp. 307-321. https://doi.org/10.1007/s10658-007-9141-9

PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Beacham, A., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2007. PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Dynamics of fungicide resistant alleles in field populations of Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2007. Dynamics of fungicide resistant alleles in field populations of Mycosphaerella graminicola.

Sterol content analysis of Mycosphaerella graminicola isolates with reduced sensitivity to triazole fungicides

C2 - Non-edited contributions to conferences

Bean, T. P., Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2007. Sterol content analysis of Mycosphaerella graminicola isolates with reduced sensitivity to triazole fungicides.

A novel substitution 1381V in the sterol 14alpha-demethylase (CYP51) of Mycosphaerella graminicola is differentially selected by azole fungicides

A - Papers appearing in refereed journals

Fraaije, B. A., Cools, H. J., Kim, S-H., Motteram, J., Clark, W. S. and Lucas, J. A. 2007. A novel substitution 1381V in the sterol 14alpha-demethylase (CYP51) of Mycosphaerella graminicola is differentially selected by azole fungicides. Molecular Plant Pathology. 8 (3), pp. 245-254. https://doi.org/10.1111/j.1364-3703.2007.00388.X

Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm

C2 - Non-edited contributions to conferences

Zlatska, A., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm. Abstracts 15th International Conference on Plant and Animal Genomes, San Diego, 13-17 January 2007 .

Understanding Sclerotinia infection in oilseed rape to improve risk assessment and disease escape

C1 - Edited contributions to conferences/learned societies

Young, C. S., Werner, C. P., West, J. S., Smith, J. A. and Rogers, S. L. 2007. Understanding Sclerotinia infection in oilseed rape to improve risk assessment and disease escape. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 140-143

Leptosphaeria maculans avirulence management for durable control of phoma stem canker on oilseed rape

C1 - Edited contributions to conferences/learned societies

West, J. S., Latunde-Dada, A. O., Rogers, S. L., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2007. Leptosphaeria maculans avirulence management for durable control of phoma stem canker on oilseed rape. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 2-4

Application of real-time and multiplex polymerase chain reaction assays to study leaf blotch epidemics in barley

A - Papers appearing in refereed journals

Fountaine, J. M., Shaw, M. W., Napier, B., Ward, E. and Fraaije, B. A. 2007. Application of real-time and multiplex polymerase chain reaction assays to study leaf blotch epidemics in barley. Phytopathology. 97, pp. 297-303. https://doi.org/10.1094/PHYTO-97-0297

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts 24th Fungal Genetics Conference, Asilomar, 20-25 March 2007 . pp. 152

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions - MPMI. 20 (2), pp. 178-193. https://doi.org/10.1094/MPMI-20-2-0178

Effects of Strobilurin fungicides on control of Septoria tritici blotch, green leaf area and yield of winter wheat in the light of fungicide resistance in Northern Ireland

C1 - Edited contributions to conferences/learned societies

Mccartney, C., Mercer, P. C., Cooke, L. R. and Fraaije, B. A. 2006. Effects of Strobilurin fungicides on control of Septoria tritici blotch, green leaf area and yield of winter wheat in the light of fungicide resistance in Northern Ireland. Fungicide Resistance: Are We Wiining the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 71

Methods to detect fungicide resistance: from broth dilution to real-time PCR

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A. and Cools, H. J. 2006. Methods to detect fungicide resistance: from broth dilution to real-time PCR. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 11-15

DMI resistance: an overview

C2 - Non-edited contributions to conferences

Fraaije, B. A. 2006. DMI resistance: an overview. Abstracts 11th IUPAC International Congress of Pesticide Chemistry, Kobe, 6-11 August 2006 . pp. 60

Fungicide resistance management strategies, using barley mildew as a model

C1 - Edited contributions to conferences/learned societies

Burnett, F. J., Clark, W. S., Fraaije, B. A. and Lucas, J. A. 2006. Fungicide resistance management strategies, using barley mildew as a model. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 83-89

Integration of molecular diagnostics and air sampling to study plant pathogens

C2 - Non-edited contributions to conferences

West, J. S., Fraaije, B. A., Motteram, J., Rogers, S. L., Lacey, M. E. and Lucas, J. A. 2006. Integration of molecular diagnostics and air sampling to study plant pathogens. Abstracts 8th International Congress on Aerobiology, Neuchatel, 21-25 August 2006 . pp. 260

Simultaneous identification of plant stresses and diseases in arable crops using proximal optical sensing and self-organising maps

A - Papers appearing in refereed journals

Moshou, D., Bravo, C., Wahlen, S., West, J. S., McCartney, H. A., De Baerdemaeker, J. and Ramon, H. 2006. Simultaneous identification of plant stresses and diseases in arable crops using proximal optical sensing and self-organising maps. Precision Agriculture. 7, pp. 149-164. https://doi.org/10.1007/s11119-006-9002-0

Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum

C2 - Non-edited contributions to conferences

Bass, C. G., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum. Abstracts 8th European Conference of Fungal Genetics, Vienna, 8-11 April 2006 . pp. 364

Avirulence management for durable control of stem canker of oilseed rape in Europe

C1 - Edited contributions to conferences/learned societies

West, J. S., Latunde-Dada, A. O., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2006. Avirulence management for durable control of stem canker of oilseed rape in Europe. Delivering Sustainability within Profitable Farming Systems - is it Possible? Aspects of Applied Biology 80 . pp. 171-176

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Hammond-Kosack, K. E. and Rudd, J. J. 2006. The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 351

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

G - Articles in popular magazines and other technical publications

Jing, H-C and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. April, pp. 2-3.

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

G - Articles in popular magazines and other technical publications

Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.

Building trans-Atlantic links in fight against plant pathogen

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2006. Building trans-Atlantic links in fight against plant pathogen. BBSRC Business. October 2006, p. 4.

The host: Resistance gene isolation and realising the potential

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2006. The host: Resistance gene isolation and realising the potential. Abstracts British Society for Plant Pathology 25th Anniversary Celebratory Meeting, London, 19 December 2006 .

BIOEXPLOIT Project

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E., Tomas, J. and Smant, G. 2006. BIOEXPLOIT Project. EUCARPIA Bulletin. 33, pp. 32-35.

To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2006. To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2.

Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2006. Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2.

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 11th IUPAC International Congress of Pesticide Chemistry, Kobe, 6-11 August 2006 . pp. 140

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F., Bean, T. P. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 . pp. 28

Evolution of azole resistance mechanisms in UK populations of Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J. and Fraaije, B. A. 2006. Evolution of azole resistance mechanisms in UK populations of Mycosphaerella graminicola. Fungicide Resistance: Are We Winning the Battle but Losing the War? Aspects of Applied Biology 78 . pp. 21-27

In planta expression analysis in Mycosphaerella graminicola of genes encoding efflux proteins

C2 - Non-edited contributions to conferences

Bean, T. P., Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2006. In planta expression analysis in Mycosphaerella graminicola of genes encoding efflux proteins. Asbtracts APS CPS MSA Joint Meeting on Plant Pathology at the Biological Crossroads, Quebec, 29 July-2 August 2006 . pp. 11

Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene

A - Papers appearing in refereed journals

Barker, C. L., Baillie, B. K., Hammond-Kosack, K. E., Jones, J. D. G. and Jones, D. A. 2006. Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal. 46, pp. 385-399. https://doi.org/10.1111/j.1365-313X.2006.02699.x

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. In %Abstracts Syngenta Postgraduate Symposium, Bracknell, 14 September 2006 .

Application of quantitative real-time PCR to monitor Rynchosporium secalis in barley cultivars

C2 - Non-edited contributions to conferences

Atkins, S. D., Fountaine, J. M., Fitt, B. D. L. and Fraaije, B. A. 2006. Application of quantitative real-time PCR to monitor Rynchosporium secalis in barley cultivars. Abstracts International Workshop on Barley Leaf Blights, Edmonton, 23-27 July 2006 .

Forward genetics for gene discovery in wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts 9th International Fungal Biology Conference and 16th New Phytologist Symposium on Impact of Genomics on Fungal Biology, Nancy, 18-20 September 2006 . pp. 17-18

Triticum monococcum, the ancient grain which turned stone age nomads into farmers

C2 - Non-edited contributions to conferences

Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13

The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity

A - Papers appearing in refereed journals

Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Molecular Plant-Microbe Interactions - MPMI. 19 (12), pp. 1451-1462. https://doi.org/10.1094/MPMI-19-1451

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2006. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts 17th International Conference on Arabidopsis Research, Madison, 28 June-2 July 2006 .

Impact of changes in the target P450 CYP51 enzyme associated with altered triazole-sensitivity in fungal pathogens of cereal crops

A - Papers appearing in refereed journals

Cools, H. J., Fraaije, B. A., Kim, S. H. and Lucas, J. A. 2006. Impact of changes in the target P450 CYP51 enzyme associated with altered triazole-sensitivity in fungal pathogens of cereal crops. Biochemical Society Transactions. 34 (6), pp. 1219-1222. https://doi.org/10.1042/BST0341219

The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat

A - Papers appearing in refereed journals

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2006. The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome. 49, pp. 1140-1148. https://doi.org/10.1139/G06-064

Improving the diversity of resistance in wheat to Fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of resistance in wheat to Fusarium ear blight disease. Abstracts 9th European Fusarium Seminar, Wageningen, 19-22 September 2006 . pp. 100

The air spora: a manual for catching and identifying airborne biological particles

E - Books edited/written by staff member, alone/with others

Lacey, M. E. and West, J. S. 2006. The air spora: a manual for catching and identifying airborne biological particles. Springer, Dordrecht.

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens Meeting, Birnam, 18-20 September 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Annual Scientific Meeting of the British Mycological Society, Birmingham, 4-7 September 2006 . pp. 68

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Biology and Bioscience CASE PhD Open Day, Bracknell, 14 September 2006 .

Coexistence of related pathogen species on arable crops in space and time

A - Papers appearing in refereed journals

Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F. and West, J. S. 2006. Coexistence of related pathogen species on arable crops in space and time. Annual Review of Phytopathology. 44, pp. 163-182. https://doi.org/10.1146/annurev.phyto.44.070505.143417

Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease. Abstracts Cranfield University Postgraduate Conference, Cranfield, 29 June 2006 .

Exploring appressorial formation in the cereal biotroph powdery mildew

C2 - Non-edited contributions to conferences

Gilbert, S. R., Fraaije, B. A., Bailey, A., Cools, H. J. and Lucas, J. A. 2006. Exploring appressorial formation in the cereal biotroph powdery mildew. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 165

Dispersal of foliar plant pathogens: mechanisms, gradients and spatial patterns

B - Book chapters etc edited externally

McCartney, H. A., Fitt, B. D. L. and West, J. S. 2006. Dispersal of foliar plant pathogens: mechanisms, gradients and spatial patterns. in: Cooke, B. M., Kaye, B. and Gareth-Jones, D. (ed.) Epidemiology of plant diseases, 2nd ed. Springer, Amsterdam. pp. 159-192

Development and field testing of fungicide anti-resistance strategies, with particular reference to strobilurin QoI group of fungicides. (HGCA Project Report No. 392)

D1 - Technical reports: non-confidential

Fraaije, B. A., Burnett, F. J., Clark, W. S. and Lucas, J. A. 2006. Development and field testing of fungicide anti-resistance strategies, with particular reference to strobilurin QoI group of fungicides. (HGCA Project Report No. 392). Home Grown Cereals Authority (HGCA) London.

Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2006. Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus. Abstracts International Conference on Advances in Plant Virology, Warwick, 5-7 April 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 355

Improved resistance management for durable disease control: a case study of phoma stem canker of oilseed rape (Brassica napus)

A - Papers appearing in refereed journals

Aubertot, J. N., West, J. S., Bousset-Vaslin, L., Salam, M. U., Barbetti, M. J. and Diggle, A. J. 2006. Improved resistance management for durable disease control: a case study of phoma stem canker of oilseed rape (Brassica napus). European Journal of Plant Pathology. 114, pp. 91-106. https://doi.org/10.1007/s10658-005-3628-z

PHI-base: a new database for pathogen host interactions

A - Papers appearing in refereed journals

Winnenburg, R., Baldwin, T. K., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. PHI-base: a new database for pathogen host interactions. Nucleic Acids Research. 34 (1), pp. D459-D464. https://doi.org/10.1093/nar/gkj047

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts Molecular Biology of Plant Pathogens Meeting, Ambleside, 19-21 September 2005 .

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts ESF-EMBO Symposium on the Comparative Genomics of Eukaryotic Microorganisms, Sant Feliu de Guixols, 12-17 November 2005 .

Plant disease detection based on data fusion of hyper-spectral and multi-spectral fluorescence imaging using Kohonen maps

A - Papers appearing in refereed journals

Moshou, D., Bravo, C., Oberti, R., West, J. S., Bodria, L., McCartney, H. A. and Ramon, H. 2005. Plant disease detection based on data fusion of hyper-spectral and multi-spectral fluorescence imaging using Kohonen maps. Real-Time Imaging. 11, pp. 75-83. https://doi.org/10.1016/j.rti.2005.03.003

The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses

C2 - Non-edited contributions to conferences

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2005. The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 113

Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 137

Testing an experimental fungicide for in vitro activity against Mycosphaerella graminicola (anamorph Septoria tritici ) (Confidential report for Cropsolution Inc)

D1 - Technical reports: non-confidential

Lucas, J. A., Bean, T., Cools, H. J. and Fraaije, B. A. 2005. Testing an experimental fungicide for in vitro activity against Mycosphaerella graminicola (anamorph Septoria tritici ) (Confidential report for Cropsolution Inc).

Exploring appressorial formation in the biotrophic cereal fungus powdery mildew

C2 - Non-edited contributions to conferences

Gilbert, S., Cools, H. J., Fraaije, B. A., Bailey, A. and Lucas, J. A. 2005. Exploring appressorial formation in the biotrophic cereal fungus powdery mildew. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 177

The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola

A - Papers appearing in refereed journals

Fraaije, B. A., Cools, H. J., Fountaine, J., Lovell, D. J., Motteram, J., West, J. S. and Lucas, J. A. 2005. The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola. Phytopathology. 95 (8), pp. 933-941. https://doi.org/10.1094/PHYTO-95-0933

QoI resistance in Mycosphaerella graminicola : role of inoculum, effect of different anti-resistance strategies and current status in the UK

C2 - Non-edited contributions to conferences

Fraaije, B. A., Burnett, F., Clark, W., Motteram, J. and Lucas, J. A. 2005. QoI resistance in Mycosphaerella graminicola : role of inoculum, effect of different anti-resistance strategies and current status in the UK. Abstracts American Phytopathological Society Annual Meeting, Austin, 30 July-3 August 2005 .

Resistance development to QoI inhibitors in populations of Mycosphaerella graminicola in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Burnett, F. J., Clark, W. S., Motteram, J. and Lucas, J. A. 2005. Resistance development to QoI inhibitors in populations of Mycosphaerella graminicola in the UK. Dehne, H-W., Lyr, H., Russell, P. E., Kuck, K. H. and Gisi, U. (ed.) Modern Fungicides and Antifungal Compounds IV: Proceedings of the 14th International Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2004 . British Crop Protection Council (BCPC). pp. 63-71

Molecular examination of Septoria tritici isolates with reduced sensitivities to triazoles

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2005. Molecular examination of Septoria tritici isolates with reduced sensitivities to triazoles. Dehne, H-W., Lyr, H., Russell, P. E., Kuck, K. H. and Gisi, U. (ed.) Modern Fungicides and Antifungal Compounds IV: Proceedings of the 14th International Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2004 . British Crop Protection Council (BCPC). pp. 103-114

Molecular mechanisms correlated with changes in triazole sensitivity in isolates of Mycosphaerella graminicola

C1 - Edited contributions to conferences/learned societies

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2005. Molecular mechanisms correlated with changes in triazole sensitivity in isolates of Mycosphaerella graminicola. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 267-274

Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

New approaches for durable disease resistance in wheat

C1 - Edited contributions to conferences/learned societies

Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970

Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Keon, J. P. R., Antoniw, J. F. and Lucas, J. A. 2005. Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling

A - Papers appearing in refereed journals

Keon, J. P. R., Rudd, J. J., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling. Molecular Plant Pathology. 6 (5), pp. 527-540. https://doi.org/10.1111/J.1364-3703.2005.00304.X

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts LAMP (London Area Molecular Plant Sciences) Meeting, Wye, 5 October 2005 .

Population dynamics and dispersal of Leptosphaeria maculans (blackleg of canola)

A - Papers appearing in refereed journals

West, J. S. and Fitt, B. D. L. 2005. Population dynamics and dispersal of Leptosphaeria maculans (blackleg of canola). Australasian plant pathology. 34, pp. 457-461. https://doi.org/10.1071/AP05086

Factors affecting co-existence of related pathogen species on arable crops

C2 - Non-edited contributions to conferences

West, J. S., Huang, Y-J., Van Den Bosch, F. and Fitt, B. D. L. 2005. Factors affecting co-existence of related pathogen species on arable crops. Abstracts 15th Biennial Australasian Plant Pathology Society Conference, Geelong, Australia, 26-29 September 2005 . pp. 92

Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp

A - Papers appearing in refereed journals

Eckert, M., Maguire, K. L., Urban, M., Foster, S. J., Fitt, B. D. L., Lucas, J. A. and Hammond-Kosack, K. E. 2005. Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp. FEMS Microbiology Letters. 253, pp. 67-74. https://doi.org/10.1016/j.femsle.2005.09.041

Enhanced avirulence management for durable control of blackleg in Europe

C1 - Edited contributions to conferences/learned societies

West, J. S., Latunde-Dada, A. O., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2005. Enhanced avirulence management for durable control of blackleg in Europe. Proceedings 14th Australian Research Assembly on Brassicas, Port Lincoln, South Australia, 3-7 October 2005 . pp. 76-81

Towards a sustainable whole-farm approach to the control of ergot

G - Articles in popular magazines and other technical publications

West, J. S. 2005. Towards a sustainable whole-farm approach to the control of ergot. RRA Newsletter. No 19, p. 2.

Evidence for the eastward spread of the aggressive oilseed rape pathogen Leptosphaeria maculans in Europe

C1 - Edited contributions to conferences/learned societies

West, J. S., Fitt, B. D. L., Jedryczka, M. and Karolewski, Z. 2005. Evidence for the eastward spread of the aggressive oilseed rape pathogen Leptosphaeria maculans in Europe. Plant Protection and Plant Health in Europe: Introduction and Spread of Invasive Species. British Crop Protection Council Symposium Proceedings No 81 . British Crop Protection Council (BCPC). pp. 293-294

Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1

C2 - Non-edited contributions to conferences

Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 4th Plant Genomics European Meetings (Plant-GEMs 4), Amsterdam, 20-23 September 2005 .

Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat

C2 - Non-edited contributions to conferences

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2005. Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Lovain-la-Neuve, 12-14 September 2005 .

Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E., Dickinson, M. and Kanyuka, K. 2005. Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Louvain-la-Neuve, 12-14 September 2005 . pp. 57

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 16th International Conference on Arabidopsis Research, Madison, 15-19 June 2005 . pp. No 530

Integration of spore trapping with molecular techniques to enhance epidemiological studies

C2 - Non-edited contributions to conferences

West, J. S., McCartney, H. A., Fountaine, J., Fraaije, B. A., Lee, I. K. and Lucas, J. A. 2005. Integration of spore trapping with molecular techniques to enhance epidemiological studies. Abstracts 9th International Workshop on Plant Disease Epidemiology, Rennes, 10-15 April 2005 . pp. 65

Patterns of ascospore release in relation to phoma stem canker epidemiology in England (Leptosphaeria maculans ) and Poland (Leptosphaeria biglobosa )

A - Papers appearing in refereed journals

Huang, Y-J., Fitt, B. D. L., Jedryczka, M., Dakowska, S., West, J. S., Gladders, P., Steed, J. M. and Li, Z-Q. 2005. Patterns of ascospore release in relation to phoma stem canker epidemiology in England (Leptosphaeria maculans ) and Poland (Leptosphaeria biglobosa ). European Journal of Plant Pathology. 111, pp. 263-277. https://doi.org/10.1007/s10658-004-4421-0

Wheat archive links long-term fungal pathogen population dynamics to air pollution

A - Papers appearing in refereed journals

Bearchell, S. J., Fraaije, B. A., Shaw, M. W. and Fitt, B. D. L. 2005. Wheat archive links long-term fungal pathogen population dynamics to air pollution. Proceedings of the National Academy of Sciences. 102 (15), pp. 5438-5442. https://doi.org/10.1073/pnas.0501596102

Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici)

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Rudd, J. J., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici). Fungal Genetics and Biology. 42, pp. 376-389. https://doi.org/10.1016/j.fgb.2004.12.005

Strobilurin resistance in Septoria tritici in the UK. (HGCA topic sheet No. 69)

G - Articles in popular magazines and other technical publications

Clark, W. and Fraaije, B. A. 2005. Strobilurin resistance in Septoria tritici in the UK. (HGCA topic sheet No. 69).

COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR

G - Articles in popular magazines and other technical publications

West, J. S., Thomas, J., Gladders, P., Booth, E., Latunde-Dada, A. O., Evans, N. and Fitt, B. D. L. 2005. COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR. RRA Newsletter. No 16, p. 4.

Comparing fungal diseases on oilseed rape in England, France and Poland

C1 - Edited contributions to conferences/learned societies

West, J. S., Jedryczka, M., Penaud, A. and Fitt, B. D. L. 2004. Comparing fungal diseases on oilseed rape in England, France and Poland.

DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004)

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2004. DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004).

Automatic detection of 'yellow rust' in wheat using reflectance measurements and neural networks

A - Papers appearing in refereed journals

Moshou, D., Bravo, C., West, J. S., Wahlen, S., McCartney, H. A. and Ramon, H. 2004. Automatic detection of 'yellow rust' in wheat using reflectance measurements and neural networks. Computers and Electronics in Agriculture. 44, pp. 173-188. https://doi.org/10.1016/j.compag.2004.04.003

Molecular mechanisms conferring reduced sensitivities to triazoles in UK isolates of Septoria tritici

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A. and Lucas, J. A. 2004. Molecular mechanisms conferring reduced sensitivities to triazoles in UK isolates of Septoria tritici.

Evolution of QoI resistance in populations of Mycosphaerella graminocola

C2 - Non-edited contributions to conferences

Fraaije, B. A. and Lucas, J. A. 2004. Evolution of QoI resistance in populations of Mycosphaerella graminocola.

COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR

G - Articles in popular magazines and other technical publications

West, J. S., Thomas, J., Gladders, P., Booth, E., Latunde-Dada, A. O., Evans, N. and Fitt, B. D. L. 2004. COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR. GCIRC Bulletin. 21, pp. 79-81.

Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi

C2 - Non-edited contributions to conferences

Maguire, K., Dickinson, M., Bowyer, P., Perrone, S., Lucas, J. A. and Hammond-Kosack, K. E. 2004. Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi. Abstracts 7th European Conference on Fungal Genetics, Copenhagen, 17-20 April 2004 .

Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens

C2 - Non-edited contributions to conferences

Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. 2004. Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 54

Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops

C1 - Edited contributions to conferences/learned societies

Hammond-Kosack, K. E., Urban, M., Baldwin, T., Daudi, A., Rudd, J. J., Keon, J., Lucas, J. A., Magiure, K., Kornyukhin, D., Jing, H-C., Bass, C. G. and Antoniw, J. F. 2004. Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26 September-1 October 2004 . Regional Institute, Gosford. pp. www.cropscience.org.au

A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance

A - Papers appearing in refereed journals

Kanyuka, K., Lovell, D. J., Mitrofanova, O. P., Hammond-Kosack, K. E. and Adams, M. J. 2004. A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance. Plant Pathology. 53 (2), pp. 154-160. https://doi.org/10.1111/j.1365-3059.2004.01000.x

Plant pathogen diagnostics: immunological and nucleic acid-based approaches

A - Papers appearing in refereed journals

Ward, E., Foster, S. J., Fraaije, B. A. and McCartney, H. A. 2004. Plant pathogen diagnostics: immunological and nucleic acid-based approaches. Annals of Applied Biology - AAB. 145 (1), pp. 1-16. https://doi.org/10.1111/j.1744-7348.2004.tb00354.x

Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi

C2 - Non-edited contributions to conferences

Maguire, K., Dickinson, M., Bowyer, P., Lucas, J. A. and Hammond-Kosack, K. E. 2003. Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi. Abstracts BSPP Presidential Meeting 2003: Plant Pathogen Genomics - from Sequence to Application, Nottingham, 15-18 December 2003 . pp. 42-43

The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia

A - Papers appearing in refereed journals

Urban, M., Mott, E., Farley, T. and Hammond-Kosack, K. E. 2003. The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia. Molecular Plant Pathology. 4 (5), pp. 347-359. https://doi.org/10.1046/J.1364-3703.2003.00183.X

Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis

G - Articles in popular magazines and other technical publications

Lovell, D. J., Parker, S. R., Baldwin, S. and Fraaije, B. A. 2003. Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis. Plant Health Progress. July 2003, p. http://www.plantmanagementnetwork.org/.

QoI resistance development in populations of cereal pathogens in the UK

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Lucas, J. A., Clark, W. S. and Burnett, F. J. 2003. QoI resistance development in populations of cereal pathogens in the UK. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 689-694

p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens

A - Papers appearing in refereed journals

Von Roepenack-Lahaye, E., Newman, M-A., Schornack, S., Hammond-Kosack, K. E., Lahaye, T., Jones, J. D. G., Daniels, M. J. and Dow, J. M. 2003. p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens. Journal of Biological Chemistry. 278, pp. 43373-43383.

The potential of optical canopy measurement for targeted control of field crop diseases

A - Papers appearing in refereed journals

West, J. S., Bravo, C., Oberti, R., Lemaire, D., Moshou, D. and McCartney, H. A. 2003. The potential of optical canopy measurement for targeted control of field crop diseases. Annual Review of Phytopathology. 41, pp. 593-614. https://doi.org/10.1146/annurev.phyto.41.121702.103726

Development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape in England in relation to thermal time

C1 - Edited contributions to conferences/learned societies

Fitt, B. D. L., Sun, P., Steed, J. M., Toscano-Underwood, C. and West, J. S. 2003. Development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape in England in relation to thermal time. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1148-1150

Use of fungicides to control early and late epidemics of stem canker (Leptosphaeria maculans ) in winter oilseed rape in England

C2 - Non-edited contributions to conferences

Gladders, P., Mcdonough, S., Fitt, B. D. L., Steed, J. M. and West, J. S. 2003. Use of fungicides to control early and late epidemics of stem canker (Leptosphaeria maculans ) in winter oilseed rape in England. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1151

Molecular diagnostics for fungal plant pathogens

A - Papers appearing in refereed journals

McCartney, H. A., Foster, S. J., Fraaije, B. A. and Ward, E. 2003. Molecular diagnostics for fungal plant pathogens. Pest Management Science. 59 (2), pp. 129-142. https://doi.org/10.1002/ps.575

Predicting latent infection around stripe rust foci for spatially variable fungicide application

C2 - Non-edited contributions to conferences

West, J. S. and McCartney, H. A. 2003. Predicting latent infection around stripe rust foci for spatially variable fungicide application. Abstracts 8th International Congress of Plant Pathology, Christchurch, 2-7 February 2003 . pp. 113

Optical detection of wheat stripe rust disease foci for spatially variable fungicide application

C2 - Non-edited contributions to conferences

McCartney, H. A., Lemaire, D., Bravo, C., Oberti, R. and West, J. S. 2003. Optical detection of wheat stripe rust disease foci for spatially variable fungicide application. Abstracts 8th International Congress of Plant Pathology, Christchurch, 2-7 February 2003 . pp. 273

Early disease detection in wheat fields using spectral reflectance

A - Papers appearing in refereed journals

Bravo, C., Moshou, D., West, J. S., McCartney, H. A. and Ramon, H. 2003. Early disease detection in wheat fields using spectral reflectance. Biosystems Engineering. 84 (2), pp. 137-145. https://doi.org/10.1016/S1537-5110(02)00269-6

Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding

A - Papers appearing in refereed journals

Hammond-Kosack, K. E. and Parker, J. E. 2003. Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology. 14, pp. 177-193.

Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum

C2 - Non-edited contributions to conferences

Daudi, A., Urban, M. and Hammond-Kosack, K. E. 2003. Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum. Abstracts SCI Student Conference on Advances in Fungal Control Strategies, Bracknell, 29 April 2003 .

Resistance in wheat powdery mildew to strobilurin fungicides: effects of dose rate, frequency and mixtures (Final report to Defra on project PT0226)

D1 - Technical reports: non-confidential

Fraaije, B. A. 2002. Resistance in wheat powdery mildew to strobilurin fungicides: effects of dose rate, frequency and mixtures (Final report to Defra on project PT0226).

In field disease and nutrient stress detection by imaging spectrography at canopy level

C2 - Non-edited contributions to conferences

Bravo, C., Moshou, D., West, J. S., Ramon, H. and McCartney, H. A. 2002. In field disease and nutrient stress detection by imaging spectrography at canopy level. Proceedings AgEng 2002, Budapest, 30 June-4 July 2002 .

Detection of foliar disease in the field by the fusion of measurements made by optical sensors

C2 - Non-edited contributions to conferences

Bravo, C., Moshou, D., Oberti, R., West, J. S., McCartney, H. A., Bodria, L. and Ramon, H. 2002. Detection of foliar disease in the field by the fusion of measurements made by optical sensors. Proceedings ASAE Annual International Meeting/CIGR 15th World Congress, Chicago, 28-31 July 2002 .

Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Lovell, D. J. and Baldwin, S. 2002. Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape.

Following the dynamics of strobilurin resistance in Blumeria graminis f.sp. tritici using quantitative allele-specific real-time PCR measurements with the fluorescent dye SYBR Green 1

A - Papers appearing in refereed journals

Fraaije, B. A., Butters, J. A., Coelho, J. M., Jones, D. R. and Hollomon, D. W. 2002. Following the dynamics of strobilurin resistance in Blumeria graminis f.sp. tritici using quantitative allele-specific real-time PCR measurements with the fluorescent dye SYBR Green 1. Plant Pathology. 51 (1), pp. 45-54. https://doi.org/10.1046/j.0032-0862.2001.00650.x

The voice of the future 2002

G - Articles in popular magazines and other technical publications

West, J. S. 2002. The voice of the future 2002. AAB News. 49, pp. 5-6.

Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum

A - Papers appearing in refereed journals

Urban, M., Daniels, S., Mott, E. and Hammond-Kosack, K. E. 2002. Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum. The Plant Journal. 32 (6), pp. 961-973. https://doi.org/10.1046/j.1365-313X.2002.01480.x

Effects of temperature and incubation time on germination of ascospores of Leptosphaeria maculans and Leptosphaeria biglobosa in vitro

C1 - Edited contributions to conferences/learned societies

Huang, Y-J., Fitt, B. D. L., Toscano-Underwood, C., Todd, A. D., West, J. S., Hall, A. and Jedryczka, M. 2002. Effects of temperature and incubation time on germination of ascospores of Leptosphaeria maculans and Leptosphaeria biglobosa in vitro.

La necrose du collet du colza: analyse de la distribution du champignon dans la plante a l'aide d'outils moleculaires

G - Articles in popular magazines and other technical publications

Schmit, J., West, J. S., Narcy, J-P., Roux, J., Balesdent, M-H., Rouxel, T. and Gout, L. 2002. La necrose du collet du colza: analyse de la distribution du champignon dans la plante a l'aide d'outils moleculaires. OCL - Oilseeds and fats, Crops and Lipids. 9(2-3), pp. 79-85.

New perspectives on the epidemiology and management of phoma stem canker of winter oilseed rape in England

C1 - Edited contributions to conferences/learned societies

West, J. S., Huang, Y-J., Steed, J. M., Leech, P. K., Fitt, B. D. L. and Gladders, P. 2002. New perspectives on the epidemiology and management of phoma stem canker of winter oilseed rape in England. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 563-568

Biology of Leptosphaeria maculans ascospore release in England and Poland

C1 - Edited contributions to conferences/learned societies

West, J. S., Jedryczka, M., Leech, P. K., Dakowska, S., Huang, Y-J., Steed, J. M. and Fitt, B. D. L. 2002. Biology of Leptosphaeria maculans ascospore release in England and Poland.

Effects of timing on Leptosphaeria maculans ascospore release and fungicide regime on phoma leaf spot and phoma stem canker development on winter oilseed rape (Brassica napus ) in southern England

A - Papers appearing in refereed journals

West, J. S., Fitt, B. D. L., Leech, P. K., Biddulph, J. E., Huang, Y-J. and Balesdent, M-H. 2002. Effects of timing on Leptosphaeria maculans ascospore release and fungicide regime on phoma leaf spot and phoma stem canker development on winter oilseed rape (Brassica napus ) in southern England. Plant Pathology. 51 (4), pp. 454-463. https://doi.org/10.1046/j.1365-3059.2002.00726.x

Colonization of winter oilseed rape tissues by A/Tox+ and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England

A - Papers appearing in refereed journals

West, J. S., Balesdent, M-H., Rouxel, T., Narcy, J. P., Huang, Y-J., Roux, J., Steed, J. M., Fitt, B. D. L. and Schmit, J. 2002. Colonization of winter oilseed rape tissues by A/Tox+ and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England. Plant Pathology. 51 (3), pp. 311-321. https://doi.org/10.1046/j.1365-3059.2002.00689.x

Stimulation of Armillaria mellea by phenolic fungicides

A - Papers appearing in refereed journals

West, J. S. and Fox, R. T. V. 2002. Stimulation of Armillaria mellea by phenolic fungicides. Annals of Applied Biology - AAB. 140 (3), pp. 291-295. https://doi.org/10.1111/j.1744-7348.2002.tb00184.x

Quantitative PCR monitoring of the effect of azoxystrobin treatments on Mycosphaerella graminicola epidemics in the field

A - Papers appearing in refereed journals

Rohel, E. A., Laurent, P., Fraaije, B. A., Cavelier, N. and Hollomon, D. W. 2002. Quantitative PCR monitoring of the effect of azoxystrobin treatments on Mycosphaerella graminicola epidemics in the field. Pest Management Science. 58 (3), pp. 248-254. https://doi.org/10.1002/ps.431

Optical disease detection and estimation of latent infections around disease foci for targeted pesticide application

C1 - Edited contributions to conferences/learned societies

West, J. S. and McCartney, H. A. 2002. Optical disease detection and estimation of latent infections around disease foci for targeted pesticide application. International Advances in Pesticide Application. Aspects of Applied Biology 66 . pp. 463-468

Improving stem canker control in winter oilseed rape by accurate timing of fungicide applications based on disease forecasts (HGCA Project Report No. OS51)

D1 - Technical reports: non-confidential

Gladders, P., Green, M. R., Steed, J. M., West, J. S. and Fitt, B. D. L. 2001. Improving stem canker control in winter oilseed rape by accurate timing of fungicide applications based on disease forecasts (HGCA Project Report No. OS51). Home Grown Cereals Authority (HGCA) London.

Precision disease detection

G - Articles in popular magazines and other technical publications

West, J. S. and McCartney, H. A. 2001. Precision disease detection. ARIA newsletter. Issue 5.

Occurrence and molecular characterization of strobilurin resistance in cucumber powdery mildew and downy mildew

A - Papers appearing in refereed journals

Ishii, H., Fraaije, B. A., Sugiyama, T., Noguchi, K., Nishimura, K., Takeda, T., Amano, T. and Hollomon, D. W. 2001. Occurrence and molecular characterization of strobilurin resistance in cucumber powdery mildew and downy mildew. Phytopathology. 91, pp. 1166-1171. https://doi.org/https://doi.org/10.1094/PHYTO.2001.91.12.1166

PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita) diseases

A - Papers appearing in refereed journals

Fraaije, B. A., Lovell, D. J., Coelho, J. M., Baldwin, S. and Hollomon, D. W. 2001. PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita) diseases. European Journal of Plant Pathology. 107, pp. 905-917. https://doi.org/10.1023/A:1013119206261

Factors affecting development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape (Brassica napus ) in southern England

A - Papers appearing in refereed journals

Sun, P., Fitt, B. D. L., Steed, J. M., Toscano-Underwood, C. and West, J. S. 2001. Factors affecting development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape (Brassica napus ) in southern England. Annals of Applied Biology - AAB. 139 (2), pp. 227-242. https://doi.org/10.1111/j.1744-7348.2001.tb00399.x

Effects of temperature on germination and hyphal growth from ascospores of A-group and B-group Leptosphaeria maculans (phoma stem canker of oilseed rape)

A - Papers appearing in refereed journals

Huang, Y-J., Toscano-Underwood, C., Fitt, B. D. L., Todd, A. D., West, J. S., Koopmann, B. and Balesdent, M-H. 2001. Effects of temperature on germination and hyphal growth from ascospores of A-group and B-group Leptosphaeria maculans (phoma stem canker of oilseed rape). Annals of Applied Biology - AAB. 139 (2), pp. 193-207. https://doi.org/10.1111/j.1744-7348.2001.tb00396.x

Diseases of rapeseed=canola (B. napus L. and Brassica rapa L. (=B. campestris L.)

G - Articles in popular magazines and other technical publications

Kharbanda, P. D., Fitt, B. D. L., Lange, R. M., West, J. S., Lamey, A. H. and Phillips, D. V. 2001. Diseases of rapeseed=canola (B. napus L. and Brassica rapa L. (=B. campestris L.).

Exploring infection of wheat and carbohydrate metabolism in Mycosphaerella graminocola transformants with differentially regulated green fluorescent protein expression

A - Papers appearing in refereed journals

Rohel, E. A., Payne, A. C., Fraaije, B. A. and Hollomon, D. W. 2001. Exploring infection of wheat and carbohydrate metabolism in Mycosphaerella graminocola transformants with differentially regulated green fluorescent protein expression. Molecular Plant-Microbe Interactions - MPMI. 14 (2), pp. 156-163. https://doi.org/10.1094/MPMI.2001.14.2.156

Novel DNA diagnostic technology in plant disease control using Septoria tritici as a model. (HGCA Project Report No. 245)

D1 - Technical reports: non-confidential

Fraaije, B. A. and Hollomon, D. W. 2001. Novel DNA diagnostic technology in plant disease control using Septoria tritici as a model. (HGCA Project Report No. 245). Home Grown Cereals Authority (HGCA) London.

Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe

A - Papers appearing in refereed journals

West, J. S., Kharbanda, P. D., Barbetti, M. J. and Fitt, B. D. L. 2001. Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe. Plant Pathology. 50 (1), pp. 10-27. https://doi.org/10.1046/j.1365-3059.2001.00546.x

Development of phoma lesions on oilseed rape leaves inoculated with ascospores of A-group and B-group Leptosphaeria maculans (stem canker) at different temperatures and wetness durations

A - Papers appearing in refereed journals

Toscano-Underwood, C., West, J. S., Fitt, B. D. L., Todd, A. D. and Jedryczka, M. 2001. Development of phoma lesions on oilseed rape leaves inoculated with ascospores of A-group and B-group Leptosphaeria maculans (stem canker) at different temperatures and wetness durations. Plant Pathology. 50 (1), pp. 28-41. https://doi.org/10.1046/j.1365-3059.2001.00526.x

Forecasting as an aid to control stem canker of winter oilseed rape

G - Articles in popular magazines and other technical publications

West, J. S., Biddulph, J. E., Leech, P. K., Williams, R. H., Fitt, B. D. L. and Gladders, P. 2000. Forecasting as an aid to control stem canker of winter oilseed rape. Blackleg News. December 1999/June 2000.

Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK

A - Papers appearing in refereed journals

West, J. S., Hughes, C. and Fox, R. T. V. 2000. Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK. Plant Pathology. 49 (6), p. 808. https://doi.org/10.1046/j.1365-3059.2000.00517.x

Leptosphaeria maculans causing stem canker of oilseed rape in China

A - Papers appearing in refereed journals

West, J. S., Evans, N., Liu, S., Hu, B. and Peng, L. 2000. Leptosphaeria maculans causing stem canker of oilseed rape in China. Plant Pathology. 49, p. 800. https://doi.org/10.1046/j.1365-3059.2000.00503.x

In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Butters, J. A. and Hollomon, D. W. 2000. In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay. Proceedings AFPP 6th International Conference on Plant Diseases, Tours, 6-8 December 2000 . pp. 779-786

In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay

C1 - Edited contributions to conferences/learned societies

Fraaije, B. A., Butters, J. A. and Hollomon, D. W. 2000. In planta genotyping of Erysiphe graminis f. sp. tritici isolates for strobilurin-resistance using a fluorometric allele-specific PCR assay. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2000 . pp. 401-406

Spectral filters for the control of Botrytis cinerea

A - Papers appearing in refereed journals

West, J. S., Pearson, S., Hadley, P., Wheldon, A. E., Davis, F. J., Gilbert, A. and Henbest, R. G. C. 2000. Spectral filters for the control of Botrytis cinerea. Annals of Applied Biology - AAB. 136, pp. 115-120. https://doi.org/10.1111/j.1744-7348.2000.tb00015.x

Predicting leaf infection by Leptosphaeria maculans on winter oilseed rape

C1 - Edited contributions to conferences/learned societies

West, J. S., Evans, N., Leech, P. K., Fitt, B. D. L., Welham, S. J., Jedryczka, M. and Penaud, A. 2000. Predicting leaf infection by Leptosphaeria maculans on winter oilseed rape.

Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK

A - Papers appearing in refereed journals

West, J. S., Hughes, C. and Fox, R. T. V. 2000. Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK. New Disease Reports. 1, p. 11.

Chemical control of Armillaria

B - Book chapters etc edited externally

West, J. S. 2000. Chemical control of Armillaria. in: Fox, R. T. V. (ed.) In Armillaria root rot: biology and control of honey fungus Intercept Ltd Andover, Hampshire England. pp. 173-

The effect of climate on the release of ascospores of Leptosphaeria maculans (stem canker of oilseed rape)

C2 - Non-edited contributions to conferences

West, J. S., Evans, N., Leech, P. K. and Fitt, B. D. L. 1999. The effect of climate on the release of ascospores of Leptosphaeria maculans (stem canker of oilseed rape). Abstracts 9th Conference on Microscopic Fungi - Plant Pathogens and their Metabolites, Poznan, 29 April 1999 .

Leptosphaeria maculans

D1 - Technical reports: non-confidential

Biddulph, J. E. and West, J. S. 1999. Leptosphaeria maculans. Wallingford, Oxon CAB International (CABI).

Optimising the use of fungicides to control stem canker of oilseed rape

C1 - Edited contributions to conferences/learned societies

West, J. S., Leech, P. K., Fitt, B. D. L., Welham, S. J., Penaud, A., Peres, A. and Poisson, B. 1999. Optimising the use of fungicides to control stem canker of oilseed rape. Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .

Yield loss of winter oilseed rape in relation to severity of stem canker (Leptosphaeria maculans ) in the UK

C1 - Edited contributions to conferences/learned societies

Zhou, Y., Fitt, B. D. L., Welham, S. J., Gladders, P., Sansford, C. E. and West, J. S. 1999. Yield loss of winter oilseed rape in relation to severity of stem canker (Leptosphaeria maculans ) in the UK. Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .

Effects of temperature and wetness duration on infection of oilseed rape by ascospores of A-group or B-group Leptosphaeria maculans (stem canker)

C1 - Edited contributions to conferences/learned societies

Biddulph, J. E., Fitt, B. D. L., Jedryczka, M., West, J. S. and Welham, S. J. 1999. Effects of temperature and wetness duration on infection of oilseed rape by ascospores of A-group or B-group Leptosphaeria maculans (stem canker). Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .

The influence of wetness and temperature on the release of ascospores of Leptosphaeria maculans (blackleg) from oilseed rape debris

C2 - Non-edited contributions to conferences

Jedryczka, M., Dakowska, S., West, J. S. and Fitt, B. D. L. 1999. The influence of wetness and temperature on the release of ascospores of Leptosphaeria maculans (blackleg) from oilseed rape debris. Materia y z Sympozjum Naukowego Polskiego Towarzystwa Fitopatologicznego: Bioroznorodnosc w Fitopatologii Europejskiej na Przelomie Wiekow, Poznan, 7-9 Wrzesien 1999 . pp. 75

Effects of severity and timing of stem canker (Leptosphaeria maculans ) symptoms on yield of winter oilseed rape (Brasica napus ) in the UK

A - Papers appearing in refereed journals

Zhou, Y., Fitt, B. D. L., Welham, S. J., Gladders, P., Sansford, C. E. and West, J. S. 1999. Effects of severity and timing of stem canker (Leptosphaeria maculans ) symptoms on yield of winter oilseed rape (Brasica napus ) in the UK. European Journal of Plant Pathology. 105, pp. 715-728. https://doi.org/10.1023/A:1008761219493

Epidemiology of Leptosphaeria maculans in relation to forecasting stem canker severity on winter oilseed rape in the UK

A - Papers appearing in refereed journals

West, J. S., Biddulph, J. E., Fitt, B. D. L. and Gladders, P. 1999. Epidemiology of Leptosphaeria maculans in relation to forecasting stem canker severity on winter oilseed rape in the UK. Annals of Applied Biology - AAB. 135 (2), pp. 535-546. https://doi.org/10.1111/j.1744-7348.1999.tb00885.x

Conditions for infection of oilseed rape leaves by ascospores of UK (A group) and Polish (B group) Leptosphaeria maculans (stem canker)

G - Articles in popular magazines and other technical publications

Biddulph, J. E., Fitt, B. D. L., Gladders, P., Jedryczka, M., West, J. S. and Welham, S. J. 1999. Conditions for infection of oilseed rape leaves by ascospores of UK (A group) and Polish (B group) Leptosphaeria maculans (stem canker). GCIRC Bulletin. 16, pp. 82-83.

Forecasting and management of light leaf spot and stem canker on winter oilseed rape

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Steed, J. L., Welham, S. J., West, J. S., Gladders, P. and Meakin, P. 1998. Forecasting and management of light leaf spot and stem canker on winter oilseed rape. Abstracts ARIA Meeting, Harpenden, 4 November 1998 .

New insights in the epidemiology of Leptosphaeria maculans ; perspectives for forecasting and control of stem canker of oilseed rape

C2 - Non-edited contributions to conferences

West, J. S., Leech, P. K., Fitt, B. D. L., Penaud, A., Jedryczka, M., Rouxel, T. and Balesdent, M-H. 1998. New insights in the epidemiology of Leptosphaeria maculans ; perspectives for forecasting and control of stem canker of oilseed rape. Abstracts Jean Chevaugeon Rencontres de Mycologie/Phytopathologie, Aussois, 27 September-1 October 1998 .

The effects of rainfall on numbers of air-borne ascospores of Leptosphaeria maculans and the development of phoma leaf lesions on winter oilseed rape

C2 - Non-edited contributions to conferences

West, J. S., Leech, P. K. and Fitt, B. D. L. 1998. The effects of rainfall on numbers of air-borne ascospores of Leptosphaeria maculans and the development of phoma leaf lesions on winter oilseed rape. Abstracts ICPP98 7th International Congress of Plant Pathology, Edinburgh, 9-16 August 1998 . pp. 2.1.7

Leptosphaeria maculans CD-ROM

J - Computer programs

Biddulph, J. and West, J. S. 1998. Leptosphaeria maculans CD-ROM. CABI International, Wallingford, Oxon (CABI).