Neotrophic effectors from Zymoseptoria tritici

Kettles, G. J., Kanyuka, K. and Rudd, J. J. 2016. Neotrophic effectors from Zymoseptoria tritici. 9th International Symposium of Septoria Disease of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. Speaker Abstracts Session 4 : Cell biology and host-pathogen interactions

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Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes.

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Hammond-Kosack, K. E., Rudd, J. J. and Kanja, C. 2024. Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.65. https://doi.org/10.1094/MPMI-37-5-S1.1

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Thynne, E., Ali, H., Seong, K., Abukhalaf, M., Guerreiro, M. A., Flores-Nunez, V. M., Hansen, R., Bergues, A., Salman, M. J., Rudd, J. J., Kanyuka, K., Tholey, A., Krasileva, K. V., Kettles, G. J. and Stukenbrock, E. H. 2024. An array of Zymoseptoria tritici effectors suppress plant immune responses. Molecular Plant Pathology. 25 (10), p. e13500. https://doi.org/10.1111/mpp.13500

Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis

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Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2024. Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis. Rothamsted Research. https://doi.org/10.23637/rothamsted.99163

Down-regulation of wheat Rubisco activase isoforms expression by virus-induced gene silencing

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Perdomo, J. A., Scales, J. C., Lee, W., Kanyuka, K. and Carmo-Silva, E. 2024. Down-regulation of wheat Rubisco activase isoforms expression by virus-induced gene silencing. Plant Direct. 8 (4), p. e583. https://doi.org/10.1002/pld3.583

Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum)

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Blyth, H. R., Zarsav, A., Smith, D., Kanyuka, K., Hassall, K. L., Michaelson, L. V., Rudd, J. J. and Haslam, R. P. 2024. Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum) . 32nd Fungal Genetics Conference. Asilomar Conference Grounds, Pacific Grove, CA 12 Mar 2024

Comparison of the impact of two key fungal signalling pathways on Zymoseptoria tritici infection reveals divergent contribution to invasive growth through distinct regulation of infection-associated genes

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Child, H. T., Deeks, M. J., Rudd, J. J. and Bates, S. 2023. Comparison of the impact of two key fungal signalling pathways on Zymoseptoria tritici infection reveals divergent contribution to invasive growth through distinct regulation of infection-associated genes. Molecular Plant Pathology. 24 (10), pp. 1220-1237. https://doi.org/10.1111/mpp.13365

Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor

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Blyth, H., Smith, D., King, R., Bayon, C., Ashfield, T., Walpole, H., Venter, E., Kanyuka, K. and Rudd, J. J. 2023. Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor. Frontiers in Plant Science. 14, p. 1140824. https://doi.org/10.3389/fpls.2023.1140824

Effector-mediated partial and nonhost disease resistance in wheat

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Rudd, J. J. 2023. Effector-mediated partial and nonhost disease resistance in wheat. New Phytologist. 238, pp. 1340-1342. https://doi.org/10.1111/nph.18872

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

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Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2023. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. BMC Biology. 21, p. 24. https://doi.org/10.1186/s12915-023-01520-6

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

N - Datasets

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90

Induction of distinct plant cell death programs by secreted proteins from the wheat pathogen Zymoseptoria tritici

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Welch, T., Bayon, C., Rudd, J. J., Kanyuka, K. and Kettles, G. J. 2022. Induction of distinct plant cell death programs by secreted proteins from the wheat pathogen Zymoseptoria tritici. Scientific Reports. 12, p. 17880. https://doi.org/10.1038/s41598-022-22660-9

Distinct roles for different autophagy-associated genes in the virulence of the fungal wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Child, H. T., Deeks, M. J., Haynes, K., Rudd, J. J. and Bates, S. 2022. Distinct roles for different autophagy-associated genes in the virulence of the fungal wheat pathogen Zymoseptoria tritici. Fungal Genetics and Biology. 163, p. 103748. https://doi.org/10.1016/j.fgb.2022.103748

A large bioassay identifies Stb resistance genes that provide broad resistance against Septoria tritici blotch Disease in the UK

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Tidd, H., Rudd, J. J., Ray, R. V., Bryant, R. and Kanyuka, K. 2022. A large bioassay identifies Stb resistance genes that provide broad resistance against Septoria tritici blotch Disease in the UK. Frontiers in Plant Science. 13, p. 1070986. https://doi.org/10.3389/fpls.2022.1070986

Apoplastic and vascular defences

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Darino, M., Kanyuka, K. and Hammond-Kosack, K. E. 2022. Apoplastic and vascular defences. Essays in Biochemistry. 66 (5), pp. 595-605. https://doi.org/10.1042/EBC20220159

Development of Plant-Based Vaccines for Prevention of Avian Influenza and Newcastle Disease in Poultry.

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Nurzijah, I., Elbohy, O. A., Kanyuka, K., Daly, J. M. and Dunham, S. 2022. Development of Plant-Based Vaccines for Prevention of Avian Influenza and Newcastle Disease in Poultry. Vaccines. 10 (3), p. 478. https://doi.org/10.3390/vaccines10030478

FANCM promotes class I interfering crossovers and suppresses class II non-interfering crossovers in wheat meiosis

A - Papers appearing in refereed journals

Desjardins, D. S., Simmonds, J., Guterman, I., Kanyuka, K., Burridge, A. J., Tock, A. J., Sanchez-Moran, E., Franklin, F. C. H., Henderson, I. R., Edwards, K. J., Uauy, C. and Higgins, J. D. 2022. FANCM promotes class I interfering crossovers and suppresses class II non-interfering crossovers in wheat meiosis. Nature Communications. 13, p. 3644. https://doi.org/10.1038/s41467-022-31438-6

Virus-mediated protein overexpression (VOX) in monocots to identify and functionally characterize fungal effectors

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Kanyuka, K. 2022. Virus-mediated protein overexpression (VOX) in monocots to identify and functionally characterize fungal effectors. in: Kufer, T. and Kaparakis-Liaskos, M. (ed.) Effector-triggered immunity Humana Press Inc. pp. 2523 p 93–112

Virus-induced gene silencing in wheat and related monocot species

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Panwar, V. and Kanyuka, K. 2022. Virus-induced gene silencing in wheat and related monocot species. in: Mysore, K. S. and Senthil-Kumar, M. (ed.) Plant Gene Silencing Humana Press Inc.

The rise of necrotrophic effectors

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Kanyuka, K., Igna, A., Solomon, P. S. and Oliver, R. P. 2021. The rise of necrotrophic effectors. New Phytologist. https://doi.org/10.1111/nph.17811

Efficient CRISPR/Cas-Mediated Targeted Mutagenesis in Spring and Winter Wheat Varieties

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Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat

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Hammond-Kosack, M., King, R., Kanyuka, K. and Hammond-Kosack, K. E. 2021. Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13672

WAKsing plant immunity, waning diseases

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Stephens, C., Hammond-Kosack, K. E. and Kanyuka, K. 2021. WAKsing plant immunity, waning diseases. Journal of Experimental Botany. 73 (1), pp. 22-37. https://doi.org/10.1093/jxb/erab422

Three LysM effectors of Zymoseptoria tritici collectively disarm chitin‐triggered plant immunity

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Tian, H., MacKenzie, C. I., Rodriguez-Moreno, L., Van den Berg, G. C. M., Chen, H., Rudd, J. J., Mesters, J. R. and Thomma, B. P. H. J. 2021. Three LysM effectors of Zymoseptoria tritici collectively disarm chitin‐triggered plant immunity. Molecular Plant Pathology. 22 (6), pp. 683-693. https://doi.org/10.1111/mpp.13055

The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection

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Wood, A. K. M., Panwar, V., Grimwade-Mann, M., Ashfield, T., Hammond-Kosack, K. E. and Kanyuka, K. 2021. The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection. Journal of Experimental Botany. 72 (13), pp. 5010-5023. https://doi.org/10.1093/jxb/erab170

Genomics accelerated isolation of a new stem rust avirulence gene - wheat resistance gene pair

A - Papers appearing in refereed journals

Upadhyaya, N. M, Mago, R., Panwar, V., Hewitt, T., Luo, M., Chen, J., Sperschneider, J., Nguyen-Phuc, H., Wang, A., Ortiz, D., Hac, L., Bhatt. D., Li, F., Zhang, J., Ayliffe, M., Figueroa, M., Kanyuka, K., Ellis, J. G. and Dodds, P. N. 2021. Genomics accelerated isolation of a new stem rust avirulence gene - wheat resistance gene pair. Nature Plants. https://doi.org/10.1038/s41477-021-00971-5

Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Stephens, C., Olmez, F., Blyth, H., McDonald, M., Bansal, A., Turgay, E. B., Hahn, F., Saintenac, C., Nekrasov, V., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2021. Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. Molecular Plant Pathology. 22 (9), pp. 1121-1133. https://doi.org/10.1111/mpp.13101

Transient reprogramming of crop plants for agronomic performance

A - Papers appearing in refereed journals

Torti, S., Schlesier, R., Tummler, A., Bartels, D., Romer, P., Koch, B., Werner, S., Panwar, V., Kanyuka, K., Von Wiren, N., Jones, J. D. G., Hause, G., Giritch, A. and Gleba, Y. 2021. Transient reprogramming of crop plants for agronomic performance . Nature Plants. 7, pp. 159-171. https://doi.org/10.1038/s41477-021-00851-y

Virus-mediated transient expression techniques enable gene function studies in black-grass

A - Papers appearing in refereed journals

Mellado-Sanchez, M., Mcdiarmid, F., Cardoso, V., Kanyuka, K. and Macgregor, D. 2020. Virus-mediated transient expression techniques enable gene function studies in black-grass . Plant Physiology. https://doi.org/10.1104/pp.20.00205

A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat

A - Papers appearing in refereed journals

Adamski, N. M., Borril, P., Brinton, J., Harrington​, S. A., Marchal, C., Bentley, A. R., Bovill, W. D., Cattivelli, L., Cockram, J., Contreras-Moreira, B., Ford, B., Ghosh, S., Harwood, W., Hassani-Pak, K., Hayta, S., Hickey, L. T., Kanyuka, K., King, J., Maccaferri, M., Naamati, G., Pozniak, C. J., Ramirez-Gonzalez, R. H., Sansaloni, C., Trevaskis, B., Wingen, L. U., Wulff, B. B. H. and Uauy​, C. 2020. A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. eLife. 9, p. e55646. https://doi.org/10.7554/eLife.55646

Virus-mediated transient expression techniques enable genetic modification of Alopecurus myosuroides

A - Papers appearing in refereed journals

Mellado-Sanchez, M., Mcdiarmid, F., Cardoso, V., Kanyuka, K. and Macgregor, D. 2020. Virus-mediated transient expression techniques enable genetic modification of Alopecurus myosuroides. Plant Physiology. 183, pp. 455-459. https://doi.org/10.1104/pp.20.00205

A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS)

B - Book chapters etc edited externally

Desjardins, S., Kanyuka, K. and Higgins, J. D. 2020. A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS). in: Pradillo, M. and Heckmann, S. (ed.) Plant Meiosis. Methods in Molecular Biology, vol 2061. New York, NY Humana Press Inc. pp. 319-330

A roadmap for gene functional characterisation in wheat

A - Papers appearing in refereed journals

Adamski, N. M., Borril, P., Brinton, J., Harrington​, S. A., Marchal, C., Bentley, A. R., Bovill, W. D., Cattivelli, L., Cockram, J., Contreras-Moreira, B., Ford, B., Ghosh, S., Harwood, W., Hassani-Pak, K., Hayta, S., Hickey, L. T., Kanyuka, K., King, J., Maccaferri, M., Naamati, G., Pozniak, C. J., Ramirez-Gonzalez, R. H., Sansaloni, C., Trevaskis, B., Wingen, L. U., Wulff, B. B. H. and Uauy​, C. 2019. A roadmap for gene functional characterisation in wheat. PeerJ. 7, p. e26877v2. https://doi.org/10.7287/peerj.preprints.26877v2

Improving disease resistance in mungbean - A combined genetic and biotechnological approach

Conference poster

Bansal, A., Nekrasov, V., Rout, G. R., Rudd, J. J., Slavov, G., Chand, R. and Kanyuka, K. 2019. Improving disease resistance in mungbean - A combined genetic and biotechnological approach. BSPP 2019: Arms race: Evolution of plant pathogens and their hosts. Exhibition and Conference Centre, University of West England, Bristol, UK 02 Sep 2019

sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem

A - Papers appearing in refereed journals

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem. Frontiers in Plant Science. 10 (892). https://doi.org/10.3389/fpls.2019.00892

Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction

C2 - Non-edited contributions to conferences

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis

A - Papers appearing in refereed journals

Chakraborty, N., Kanyuka, K., Kumar Jaiswal, D., Kumar, A., Arora, V., Malik, A., Gupta, N., Hooley, R. and Raghuram, N. 2019. GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis. Scientific Reports. 9, p. 5838. https://doi.org/10.1038/s41598-019-42084-2

Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici

C2 - Non-edited contributions to conferences

Dodds, P., Upadhyaya, N., Ortiz, D., Li, F., Chen, J., Miller, M., Luo, M., Mago, R., Ellis, J., Sperschneider, J., Nguyen-Phuc, H., Bouton, C., Steffenson, B., Hirsch, C., Silverstein, K., Park, R., Kanyuka, K. and Figueroa, M. 2019. Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici

Conference paper

Stephens, C., Blyth, H., Olmez, F., Turgay, E. B., Chen, H., McDonald, M., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2019. Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici. Molecular Biology of Plant Pathogens (MBPP) Conference. John Innes Centre, Norwich, UK 18 Mar 2019

Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat.

Conference poster

Tidd, H., Bryant, R and Kanyuka, K. 2019. Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat. International Symposium on Cereal Leaf Blights 2019. University College Dublin, Dublin, Ireland 22 May 2019

Cell surface immune receptors: the guardians of the plant’s extracellular spaces

A - Papers appearing in refereed journals

Kanyuka, K. and Rudd, J. J. 2019. Cell surface immune receptors: the guardians of the plant’s extracellular spaces. Current Opinion in Plant Biology. 50, pp. 1-8. https://doi.org/10.1016/j.pbi.2019.02.005

The role of photoprotection in disease resistance to Septoria tritici blotch in wheat

C2 - Non-edited contributions to conferences

Angelopoulou, D., Kanyuka, K., Murchie, E. and Ray, R. 2019. The role of photoprotection in disease resistance to Septoria tritici blotch in wheat. International Symposium on Cereal Leaf Blights 2019. University College Dublin, Dublin, Ireland 22 May 2019

Knocking down wheat meiotic genes through Virus-induced gene-silencing (VIGS)

C2 - Non-edited contributions to conferences

Desjardins, S., Kanyuka, K. and Higgins, J. D. 2019. Knocking down wheat meiotic genes through Virus-induced gene-silencing (VIGS). The Plant and Animal Genome XXVII Conference (PAG). San Diego, CA, USA 12 Jan 2019

MSH2 is required for obligate crossover formation in wheat

C2 - Non-edited contributions to conferences

Ogle, D., Desjardins, S., Gutterman, I., Simmonds, J., Uauy, C., Kanyuka, K. and Higgins, J. D. 2019. MSH2 is required for obligate crossover formation in wheat. The Plant and Animal Genome XXVII Conference (PAG). San Diego, CA, USA 12 Jan 2019

Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome

C1 - Edited contributions to conferences/learned societies

Machado, A., King, R., Urban, M., Del Ponte, E. M., Tessmann, D. J., Kanyuka, K. and Hammond-Kosack, K. E. 2018. Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-108-10-S1.1

Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici

C2 - Non-edited contributions to conferences

Upadhyaya, N. M., Ortiz, D., Chen, J., Ellis, J., Li, F., Mago, R., Kanyuka, K., Figueroa, M., Park, R. F. and Dodds, P. 2018. Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-108-10-S1.1

Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions

A - Papers appearing in refereed journals

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2018. Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions. bioRxiv. https://doi.org/10.1101/501650

Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

Conference poster

Stephens, C., Blyth, H., Olmez, F., McDonald, M., Solomon, P., Milgate, A., Chen, H., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2018. Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. British Society of Plant Pathology Presidential Meeting, Warwick 2018. Warwick University 10 Dec 2018 https://doi.org/N/A

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Kettles, G. J., Bayon, C., Sparks, C. A., Canning, G., Kanyuka, K. and Rudd, J. J. 2018. Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici. New Phytologist. 217 (1), pp. 320-331. https://doi.org/10.1111/nph.14786

Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals

Derbyshire, M. C., Gohari, A. M., Mehrabi, R., Kilaru, S., Steinberg, G., Ali, S., Bailey, A., Hammond-Kosack, K. E., Kema, G. H. J. and Rudd, J. J. 2018. Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat. Scientific Reports. 8 (17069). https://doi.org/10.1038/s41598-018-35223-8

Plant pathogen effector proteins as manipulators of host microbiomes?

A - Papers appearing in refereed journals

Snelder, N. C., Kettles, G. J., Rudd, J. J. and Thomma, B. P. H. J. 2018. Plant pathogen effector proteins as manipulators of host microbiomes? Molecular Plant Pathology. 19 (2), pp. 257-259. https://doi.org/10.1111/mpp.12628

Foxtail mosaic virus: a new viral vector for protein expression in cereals

A - Papers appearing in refereed journals

Bouton, C., King, R., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E. and Kanyuka, K. 2018. Foxtail mosaic virus: a new viral vector for protein expression in cereals. Plant Physiology. 177 (4), pp. 1352-1367. https://doi.org/10.1104/pp.17.01679

Shifting the limits in wheat research and breeding using a fully annotated reference genome

A - Papers appearing in refereed journals

International Wheat Genome Sequencing Consortium (IWGSC), Kanyuka, K. and King, R. 2018. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science - AAAS. 361 (6403), p. eaar7191. https://doi.org/10.1126/science.aar7191

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x

Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains

C2 - Non-edited contributions to conferences

Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.

Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713

Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields

C2 - Non-edited contributions to conferences

Kanyuka, K., Machado, A., Urban, M., Lee, W. S., Brown, N. J., King, R. A., Lau, E. Y., Sparks, C. A., Bonato, A. L. V., Tibola, C. S., Martins, N. F., Aragao, F. J., West, J., Fernandes, J. M. C. and Hammond-Kosack, K. E. 2017. Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields. 1st COST iPlanta Conferernce; "Creating the plant RNAi research network CA15223", La Sapienza - CNR Headquarter , Rome, Italy, 15-17 February 2017.

RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals

A - Papers appearing in refereed journals

Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799. https://doi.org/10.1002/ps.4748

Early molecular signatures of responses of wheat to Zymoseptoria tritici in compatible and incompatible interactions.

A - Papers appearing in refereed journals

Orton, E. S., Rudd, J. J. and Brown, J. K. 2017. Early molecular signatures of responses of wheat to Zymoseptoria tritici in compatible and incompatible interactions. Plant Pathology. 66 (3), pp. 450-459. https://doi.org/10.1111/ppa.12633

A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae

A - Papers appearing in refereed journals

Franco-Orozco, B., Berepiki, A., Ruiz, O., Gamble, L., Griffe, L. L., Wang, S., Birch, P. R. J., Kanyuka, K. and Avrova, A. 2017. A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae. New Phytologist. 214 (4), pp. 1657-1672. https://doi.org/10.1111/nph.14542

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia

A - Papers appearing in refereed journals

Yang, P., Habekuss, A., Hofinger, Bernhard J., Kanyuka, K., Kilian, B., Graner, Andreas, Ordon, Frank and Stein, Nils 2017. Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theoretical and Applied Genetics. 130 (2), pp. 331-344. https://doi.org/10.1007/s00122-016-2814-z

Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana

A - Papers appearing in refereed journals

Kettles, G. J., Bayon, C., Canning, G., Rudd, J. J. and Kanyuka, K. 2017. Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana. New Phytologist. 213 (1), pp. 338-350. https://doi.org/10.1111/nph.14215

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

A - Papers appearing in refereed journals

King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672

Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat

A - Papers appearing in refereed journals

Chen, J., Upadhyaya, N. M., Ortiz, D., Sperschneider, J., Li, F., Bouton, C., Breen, S., Dong, C., Xu, B., Zhang, X., Mago, R., Newell, K., Xia, X., Bernoux, M., Taylor, J. M., Steffenson, B., Jin, Y., Zhang, P., Kanyuka, K., Figueroa, M., Ellis, J. G., Park, R. F. and Dodds, P. N. 2017. Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat. Science - AAAS. 358 (6370), pp. 1607-1610. https://doi.org/10.1126/science.aao4810

The Potato Aphid Salivary Effector Me47 Is a Glutathione-S-Transferase Involved in Modifying Plant Responses to Aphid Infestation

A - Papers appearing in refereed journals

Kettles, G. J. and Kaloshian, I. 2016. The Potato Aphid Salivary Effector Me47 Is a Glutathione-S-Transferase Involved in Modifying Plant Responses to Aphid Infestation. Frontiers in Plant Science. 7. https://doi.org/10.3389/fpls.2016.01142

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

Evolution of recessive resistance genes against the bymovirus disease of barley

C2 - Non-edited contributions to conferences

Yang, P., Habekuss, A., Hofinger, B. J., Kanyuka, K., Kilian, B., Graner, A., Ordon, F. and Stein, N. 2016. Evolution of recessive resistance genes against the bymovirus disease of barley.  Abstacts 12th International Barely Genetics Symposium, Minneapolis, Minnesota, USA, 26-30 June, 2016. pp. Poster 215

A detailed curation of the Zymoseptoria tritici IPO323 gene annotation

C2 - Non-edited contributions to conferences

King, R., Rudd, J. J. and Kanyuka, K. 2016. A detailed curation of the Zymoseptoria tritici IPO323 gene annotation. Abstracts 9th International Symposium on Septoria Diseases of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. P0927

Resurrecting a 750-year-old plant virus

C2 - Non-edited contributions to conferences

Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.

A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley

C2 - Non-edited contributions to conferences

Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39

A cytotoxic effector from the wheat pathogen Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J., Kanyuka, K. and Rudd, J. J. 2016. A cytotoxic effector from the wheat pathogen Zymoseptoria tritici. Abstract IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract No P6-144

Solanaceous species recognise a novel PAMP from Rhynchosporium commune

C2 - Non-edited contributions to conferences

Franco, B., Berepiki, A., Birch, P. R. J., Kanyuka, K. and Avrova, A. 2016. Solanaceous species recognise a novel PAMP from Rhynchosporium commune. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract No P7-170

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants

C2 - Non-edited contributions to conferences

Kettles, G. J., King, R., Hooper, J., Skinner, W., Hargreaves, J., Kanyuka, K., Fraaije, B. A. and Rudd, J. J. 2016. Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants. IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number S6-3

Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680

A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots

C1 - Edited contributions to conferences/learned societies

Avrova, A., Franco, B., Berepiki, A., Birch, P. and Kanyuka, K. 2016. A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots. Abstracts 9th International Symposium on Spetoria Disease of Cereals (ISSDSC), Paris, France, 7-9 April, 2016.

The genome of the emerging barley pathogen Ramularia collo-cygni

A - Papers appearing in refereed journals

McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584. https://doi.org/10.1186/s12864-016-2928-3

A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness

A - Papers appearing in refereed journals

Hen-Avivi, S., Savin, O., Racovita, R. C., Lee, W-S., Adamski, N. M., Malitsky, S., Almekias-Siegl, E., Levy, M., Vautrin, S., Berges, H., Friedlander, G., Kartvelishvily, E., Ben-Zvi, G., Alkan, N., Uauy, C., Kanyuka, K., Jetter, R., Distelfeld, A. and Aharoni, A. 2016. A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness. The Plant Cell. 28 (6), pp. 1440-1460. https://doi.org/10.1105/tpc.16.00197

A role for BAK1 in the Zymoseptoria tritici-wheat interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Comparative transcriptomic analyses of Zymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles

A - Papers appearing in refereed journals

Palma-Guerrero, J., Torriani, S. F. F., Zala, M., Carter, D., Courbot, M., Rudd, J. J., Mcdonald, B. A. and Croll, D. 2016. Comparative transcriptomic analyses of Zymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles. Molecular Plant Pathology. 17 (6), pp. 845-859. https://doi.org/10.1111/mpp.12333

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

C2 - Non-edited contributions to conferences

Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Kettles, G. J. and Kanyuka, K. 2016. Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici. Frontiers in Plant Science. 7, p. 508. https://doi.org/10.3389/fpls.2016.00508

Toxic effectors from the wheat pathogen Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2015. Toxic effectors from the wheat pathogen Zymoseptoria tritici. Abstracts MonoGram 2015, Harpenden, 29 April-1 May 2015 .

Necrotrophic effectors from Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J. 2015. Necrotrophic effectors from Zymoseptoria tritici. Abstracts Zymoseptoria tritici Meeting, Paris, 10-11 September 2015 .

Candidate necrotrophic effectors from the wheat pathogen Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2015. Candidate necrotrophic effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 28th Fungal Genetics Conference, Pacific Grove, 17-22 March 2015 . pp. 134

Plant fungal resistance gene. WO2017103582 (A1)

H1 - Patents granted

Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).

G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana

A - Papers appearing in refereed journals

Chakroborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. and Raghuram, N. 2015. G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana. Plant Molecular Biology. 89, pp. 559-576. https://doi.org/10.1007/s11103-015-0374-2

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

A - Papers appearing in refereed journals

Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008

Previous bottlenecks and future solutions to dissecting the Zymoseptoria tritici -wheat host-pathogen interaction

A - Papers appearing in refereed journals

Rudd, J. J. 2015. Previous bottlenecks and future solutions to dissecting the Zymoseptoria tritici -wheat host-pathogen interaction. Fungal Genetics and Biology. 79, pp. 24-28. https://doi.org/10.1016/j.fgb.2015.04.005

Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics

A - Papers appearing in refereed journals

Yang, F., Li, W., Derbyshire, M., Larsen, M. R., Rudd, J. J. and Palmisano, G. 2015. Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics. BMC Genomics. 16, p. 362. https://doi.org/10.1186/s12864-015-1549-6

Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance

A - Papers appearing in refereed journals

Lee, W-S., Rudd, J. J. and Kanyuka, K. 2015. Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance. Fungal Genetics and Biology. 79 (June), pp. 84-88. https://doi.org/10.1016/j.fgb.2015.04.006

Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals

Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions - MPMI. 28, pp. 590-604. https://doi.org/10.1094/MPMI-10-14-0346-R

In planta transient expression systems for monocots

B - Book chapters etc edited externally

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432

Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody

A - Papers appearing in refereed journals

Jobsri, J., Allen, A., Rajagopal, D., Shipton, M., Kanyuka, K., Lomonossoff, G. P., Ottensmeier, C., Diebold, S. S., Stevenson, F. K. and Savelyeva, N. 2015. Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody. PLOS ONE. 10, p. e0118096. https://doi.org/10.1371/journal.pone.0118096

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition

A - Papers appearing in refereed journals

Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927

Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation

A - Papers appearing in refereed journals

Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. A. and Raghuram, N. 2015. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLOS ONE. 10, p. e0117819. https://doi.org/10.1371/journal.pone.0117819

Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici

A - Papers appearing in refereed journals

Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605. https://doi.org/10.1111/nph.13323

Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2014. Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Rhodes, 6-10 July 2014 . pp. P310

Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Kettles, G. J. 2014. Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 2014 Mycosphaerella Research Community Meeting, Exeter, 11 September 2014 .

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703

A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences

C2 - Non-edited contributions to conferences

Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069

Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction

C2 - Non-edited contributions to conferences

Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .

Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance

C2 - Non-edited contributions to conferences

Gamble, L., Lynott, J., Berepiki, A., Kanyuka, K., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A. C., Birch, P. R. J. and Avrova, A. 2014. Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P332

Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat

C2 - Non-edited contributions to conferences

Cambon, F., Lasserre-Zuber, P., Langin, T., Kanyuka, K. and Saintenac, C. 2014. Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat. Abstracts Mycosphaerella Research Community Meeting, Exeter, 11-12 September 2014 .

Rhynchosporium commune effector compliment and their role in pathogenicity on barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335

Rhynchosporium commune effectors identification and exploitation

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .

Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .

From Rhynchosporium commune genome sequence to barley resistance

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .

The role of chitin signalling in defence against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .

Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV)

A - Papers appearing in refereed journals

Perovic, D., Kramer, I., Habekuss, A., Perner, K., Pickering, R., Proeseler, G., Kanyuka, K. and Ordon, F. 2014. Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV). Theoretical and Applied Genetics. 127, pp. 1061-1071. https://doi.org/10.1007/s00122-014-2279-x

Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat

A - Papers appearing in refereed journals

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions - MPMI. 27 (3), pp. 236-243. https://doi.org/10.1094/MPMI-07-13-0201-R

Virus-induced gene silencing as a useful tool for functional genomics in wheat

C2 - Non-edited contributions to conferences

Kanyuka, K. 2014. Virus-induced gene silencing as a useful tool for functional genomics in wheat. International Conference on Translational Cereal Genomics, Vienna, 9-11 February 2014 . pp. 22

Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79

BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Identification and characterisation of effectors from barley pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Griffe, L., Gamble, L., Lynott, J., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Identification and characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 4th Dissemination Event, Cambridge, 15-16 May 2013 .

Characterisation of effectors from barley pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Griffe, L., Gamble, L., Berepiki, A., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2013. Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola. Abstracts 5th Congress of European Microbiologists (FEMS), Leipzig, 21-25 July 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Berepiki, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Comparative transcriptome analysis of single and double mutants of GPA1 and GCR1 reveals their combinatorial genomewide roles in G-protein signaling in Arabidopsis thaliana

C2 - Non-edited contributions to conferences

Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Pillai, B., Choudhury, D., Hooley, R. and Raghuram, N. 2013. Comparative transcriptome analysis of single and double mutants of GPA1 and GCR1 reveals their combinatorial genomewide roles in G-protein signaling in Arabidopsis thaliana. Abstracts Indraprastha International Conference on Biotechnology, New Delhi, 22-25 October 2013 . pp. 155-156

Identification and characterisation of effectors from barley pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Griffe, L., Gamble, L., Lynott, J., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Identification and characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts Effectome 2013, Montpelier, 25-27 September 2013 .

Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection

C2 - Non-edited contributions to conferences

Kanyuka, K., Lee, W-S., Hammond-Kosack, K. E. and Rudd, J. J. 2013. Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection. Abstracts 12th International Wheat Genetics Symposium (IWGS), Yokohama, 8-14 September 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts 1st Annual Meeting COST Action FA 1208 Pathogen-informed Strategies for Sustainable Broad-Spectrum Crop Resistance, Birnam, 9-11 October 2013 .

Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .

BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .

Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species

C2 - Non-edited contributions to conferences

Lucas, J. A., Amaral, A., Hammond-Kosack, K. E. and Rudd, J. J. 2012. Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species. Abstracts 4th Brazilian Congress of Biotechnology, Guaruja, 28 October - 1 November 2012 . pp. 30

Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein

A - Papers appearing in refereed journals

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2012. Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein. Plant Physiology. 160, pp. 582-590. https://doi.org/10.1104/pp.112.203489

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp). https://doi.org/10.1371/journal.pone.0049904

A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola. Abstracts IS-MPMI 2012 15th International Congress, Kyoto, 29 July - 2 August 2012 . pp. 104

Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Lee, W-S., Marshall, R., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2012. Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola. Abstracts Plant Biology Congress, Freiburg, 29 July-3 August 2012 . pp. 709

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Rank Prize Funds Mini-Symposium on New Horizons in Plant-Pathogen Interactions, Grasmere, 30 April-3 May 2012 .

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Molecular Biology of Plant Pathogens, Reading, 16-17 April 2012 .

Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2012. Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 233

The top 10 fungal pathogens in molecular plant pathology

A - Papers appearing in refereed journals

Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G. D. 2012. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13 (4), pp. 414-430. https://doi.org/10.1111/j.1364-3703.2011.00783.x

Virus-induced gene silencing system for functional genomics studies in wheat and related cereals

C2 - Non-edited contributions to conferences

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14

Reducing take-all inoculum build-up during a first wheat crop

C2 - Non-edited contributions to conferences

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).

OmniMapFree a unified tool to visualise and explore sequenced genomes

A - Papers appearing in refereed journals

Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp). https://doi.org/10.1186/1471-2105-12-447

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

A - Papers appearing in refereed journals

Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

A - Papers appearing in refereed journals

Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat

A - Papers appearing in refereed journals

Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347

A new approach to reduce the risk of Take-all disease

G - Articles in popular magazines and other technical publications

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.

Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey

A - Papers appearing in refereed journals

Yilmaz, N. D. K., Lyons, R. L., Smith, M. J. and Kanyuka, K. 2011. Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey. European Journal of Plant Pathology. 130, pp. 59-72. https://doi.org/10.1007/s10658-010-9731-9

Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment

A - Papers appearing in refereed journals

Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves

A - Papers appearing in refereed journals

Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71. https://doi.org/10.1016/j.jplph.2010.05.024

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Parker, J. E., Motteram, J., Kelly, D. E., Lucas, J. A., Rudd, J. J., Kelly, S. L. and Fraaije, B. A. 2010. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 .

Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol)

D1 - Technical reports: non-confidential

Perovic, D., Kanyuka, K. and Ordon, F. 2010. Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol).

Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats

A - Papers appearing in refereed journals

Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009

Molecular and genetic studies on Fusarium Ear Blight disease of wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .

Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .

A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18

Chemical induced defences in association with wheat leaf infection by Septoria tritici . Confidential report for DuPont Ltd

D1 - Technical reports: non-confidential

Rudd, J. J., Motteram, J. and Antoniw, J. F. 2009. Chemical induced defences in association with wheat leaf infection by Septoria tritici . Confidential report for DuPont Ltd.

Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp). https://doi.org/10.1186/1471-2164-10-458

High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley

A - Papers appearing in refereed journals

Hofinger, B. J., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics. 119, pp. 851-865. https://doi.org/10.1007/s00122-009-1094-2

High resolution melting curve analysis for mutation detection in plants: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High resolution melting curve analysis for mutation detection in plants: a case study in barley. Abstracts Monogram Network Workshop, Bristol, 29 April-1 May 2009 . pp. 28

Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Kufner, I., Deller, S., Brunner, F., Hammond-Kosack, K. E., Nurnberger, T. and Rudd, J. J. 2009. Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Molecular Plant-Microbe Interactions - MPMI. 22 (7), pp. 790-799. https://doi.org/10.1094/MPMI-22-7-0790

Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in bread wheat

A - Papers appearing in refereed journals

Perovic, D., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2009. Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in bread wheat. Molecular Breeding. 23, pp. 641-653. https://doi.org/10.1007/s11032-009-9262-2

Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues

A - Papers appearing in refereed journals

Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions - MPMI. 22 (5), pp. 560-574. https://doi.org/10.1094/MPMI-22-5-0560

Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in wheat

C2 - Non-edited contributions to conferences

Perovic, D., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2008. Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in wheat. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlingburg, 1-4 September 2008 . pp. 24

Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Gordon Research Conference on Cellular and Molecular Fungal Biology, Holderness, New Hampshire, 29 June - 4 July 2008 .

Plant resistance signalling hijacked by a necrotrophic fungal pathogen

A - Papers appearing in refereed journals

Hammond-Kosack, K. E. and Rudd, J. J. 2008. Plant resistance signalling hijacked by a necrotrophic fungal pathogen. Plant Signaling and Behavior. 3, pp. 993-995.

Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts BSPP Preseidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 9

Importance of diagnostic markers for the management of soil-borne viral diseases of barley and wheat

C1 - Edited contributions to conferences/learned societies

Perovic, D., Tyrka, M., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R. L., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2008. Importance of diagnostic markers for the management of soil-borne viral diseases of barley and wheat. Kobiljski, B. (ed.) Proceedings International Conference on Conventional and Molecular Breeding of Field and Vegetable Crops, Novi Sad, Serbia, 24-27 November 2008 . Institute of Field and Vegetable Crops, Novi Sad. pp. 233-237

Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Motteram, J., Pirie, E. J. and Hammond-Kosack, K. E. 2008. Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Investigating resistance mechanisms to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Investigating resistance mechanisms to furoviruses in wheat and barley. Abstracts 14th International Congress of Virology, Istanbul, 10-15 August 2008 .

Characterisation of resistance to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Zlatska, A., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Characterisation of resistance to furoviruses in wheat and barley. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 .

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Molecular Biology of Plant Pathogens, Birnam, 17-19 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis

A - Papers appearing in refereed journals

Zhang, Y., Wang, Y., Kanyuka, K., Parry, M. A. J., Powers, S. J. and Halford, N. G. 2008. GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis. Journal of Experimental Botany. 59 (11), pp. 3131-3141. https://doi.org/10.1093/jxb/ern169

Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley

A - Papers appearing in refereed journals

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Molecular Plant-Microbe Interactions - MPMI. 21 (9), pp. 1193-1204. https://doi.org/10.1094/MPMI-21-9-1193

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley. Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .

Exploring eIF4E-based recessive resistance in barley to the bymoviruses Barley yellow mosiac virus (BaYMV) and Barley mild mosaic virus (BaMMV)

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T. and Kanyuka, K. 2008. Exploring eIF4E-based recessive resistance in barley to the bymoviruses Barley yellow mosiac virus (BaYMV) and Barley mild mosaic virus (BaMMV). Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .

The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola

A - Papers appearing in refereed journals

Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815. https://doi.org/10.1104/pp.108.119511

Resistance genes (R genes) in plants

B - Book chapters etc edited externally

Hammond-Kosack, K. E. and Kanyuka, K. 2008. Resistance genes (R genes) in plants. in: Encyclopedia of life sciences John Wiley & Sons Chichester, West Sussex.

Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat

C2 - Non-edited contributions to conferences

Kanyuka, K. and Hammond-Kosack, K. E. 2008. Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat. Abstracts 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008 .

Molecular genetic and genomic analysis of wheat-pathogen interactions

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13

Can information on the mode of pathogen attack be used to formulate novel crop protection strategies?

C1 - Edited contributions to conferences/learned societies

Rudd, J. J., Jing, H-C. and Hammond-Kosack, K. E. 2007. Can information on the mode of pathogen attack be used to formulate novel crop protection strategies? Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 706-707

Septoria leaf blotch benefits from the suicidal tendencies of wheat leaves

G - Articles in popular magazines and other technical publications

Rudd, J. J. 2007. Septoria leaf blotch benefits from the suicidal tendencies of wheat leaves. RRA Newsletter. Issue 24, p. 4.

Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions

C2 - Non-edited contributions to conferences

Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Triticum monococcum as a reference species for wheat genetics and genomics

C2 - Non-edited contributions to conferences

Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764. https://doi.org/10.1093/jxb/erm225

Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat

C2 - Non-edited contributions to conferences

Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54

Using natural barley resources to discover novel alleles of eIF4E which can provide resistance against bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T. and Kanyuka, K. 2007. Using natural barley resources to discover novel alleles of eIF4E which can provide resistance against bymoviruses. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 53

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

Barley eIF4E recessive resistance genes to soil-borne mosaic viruses

C2 - Non-edited contributions to conferences

Kanyuka, K. 2007. Barley eIF4E recessive resistance genes to soil-borne mosaic viruses. Abstracts 4th UK Small Grain Cereals Genetic and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

Identification of variant natural and chemically induced alleles of EIF4E in barley for control of bymoviruses

C2 - Non-edited contributions to conferences

Bass, C. G., Baldwin, T., Tymon, A. and Kanyuka, K. 2007. Identification of variant natural and chemically induced alleles of EIF4E in barley for control of bymoviruses. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 287

Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm

C2 - Non-edited contributions to conferences

Zlatska, A., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm. Abstracts 15th International Conference on Plant and Animal Genomes, San Diego, 13-17 January 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts 24th Fungal Genetics Conference, Asilomar, 20-25 March 2007 . pp. 152

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions - MPMI. 20 (2), pp. 178-193. https://doi.org/10.1094/MPMI-20-2-0178

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Hammond-Kosack, K. E. and Rudd, J. J. 2006. The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 351

Self-incompatibility in Papaver targets soluble inorganic pyrophosphatases in pollen

A - Papers appearing in refereed journals

De Graaf, B. H. J., Rudd, J. J., Wheeler, M. J., Perry, R. M., Bell, E. M., Osman, K., Franklin, F. C. H. and Franklin-Tong, V. E. 2006. Self-incompatibility in Papaver targets soluble inorganic pyrophosphatases in pollen. Nature. 444, pp. 490-493. https://doi.org/10.1038/nature05311

Forward genetics for gene discovery in wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22

Triticum monococcum, the ancient grain which turned stone age nomads into farmers

C2 - Non-edited contributions to conferences

Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat

A - Papers appearing in refereed journals

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2006. The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome. 49, pp. 1140-1148. https://doi.org/10.1139/G06-064

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens Meeting, Birnam, 18-20 September 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Annual Scientific Meeting of the British Mycological Society, Birmingham, 4-7 September 2006 . pp. 68

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Biology and Bioscience CASE PhD Open Day, Bracknell, 14 September 2006 .

Functionality of resistance gene Hero which controls plant root-infecting potato cyst nematodes, in leaves of tomato

A - Papers appearing in refereed journals

Caberera Poch, H. L., Manzanilla-Lopez, R. H. and Kanyuka, K. 2006. Functionality of resistance gene Hero which controls plant root-infecting potato cyst nematodes, in leaves of tomato. Plant, Cell and Environment. 29 (7), pp. 1372-1378. https://doi.org/10.1111/j.1365-3040.2006.01517.x

Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2006. Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus. Abstracts International Conference on Advances in Plant Virology, Warwick, 5-7 April 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 355

Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 137

The use of PCR methods for Polymyxa graminis to study intraspecific variation, phylogeny and inoculum levels

C2 - Non-edited contributions to conferences

Ward, E., Motteram, J., Kanyuka, K. and Adams, M. J. 2005. The use of PCR methods for Polymyxa graminis to study intraspecific variation, phylogeny and inoculum levels. Abstracts 6th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Bologna, 5-7 September 2005 .

The umb 1 mutant of Arabidopsis provides evidence for a role of BIG protein in metabolism and nutrient signalling

C2 - Non-edited contributions to conferences

Ghneim, T., Kanyuka, K., Smirnoff, N. and Hooley, R. 2005. The umb 1 mutant of Arabidopsis provides evidence for a role of BIG protein in metabolism and nutrient signalling. Abstracts Plant Biology 2005: Annual Meeting of the American Society of Plant Biologists, Seattle, 16-20 July 2005 .

Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

New approaches for durable disease resistance in wheat

C1 - Edited contributions to conferences/learned societies

Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970

Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling

A - Papers appearing in refereed journals

Keon, J. P. R., Rudd, J. J., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling. Molecular Plant Pathology. 6 (5), pp. 527-540. https://doi.org/10.1111/J.1364-3703.2005.00304.X

Natural and induced barley e1F4E gene mutants provide resistance to bymoviruses: a conserved antiviral resistance mechanism in plants

C2 - Non-edited contributions to conferences

Kanyuka, K., Druka, A., Caldwell, D. G., Tymon, A., Mccallum, N., Waugh, R. and Adams, M. J. 2005. Natural and induced barley e1F4E gene mutants provide resistance to bymoviruses: a conserved antiviral resistance mechanism in plants. Abstracts 6th Symposium International Working Group on Plant Viruses with Fungal Vectors (IWGPVFV), Bologna, 5-7 September 2005 .

Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1

C2 - Non-edited contributions to conferences

Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .

Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat

C2 - Non-edited contributions to conferences

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2005. Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Lovain-la-Neuve, 12-14 September 2005 .

Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E., Dickinson, M. and Kanyuka, K. 2005. Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Louvain-la-Neuve, 12-14 September 2005 . pp. 57

Evidence that the recessive bymovirus resistance locus rym 4 in barley corresponds to the eukaryotic translation initiation factor 4E gene

A - Papers appearing in refereed journals

Kanyuka, K., Druka, A., Caldwell, D. G., Tymon, A., Mccallum, N., Waugh, R. and Adams, M. J. 2005. Evidence that the recessive bymovirus resistance locus rym 4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Molecular Plant Pathology. 6 (4), pp. 449-458. https://doi.org/10.1111/J.1364-3703.2005.00294.X

Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici)

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Rudd, J. J., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici). Fungal Genetics and Biology. 42, pp. 376-389. https://doi.org/10.1016/j.fgb.2004.12.005

The use of conventional and quantitative real-time PCR assays for Polymyxa graminis to examine host plant resistance, inoculum levels and intraspecific variation

A - Papers appearing in refereed journals

Ward, E., Kanyuka, K., Motteram, J., Kornyukhin, D. and Adams, M. J. 2005. The use of conventional and quantitative real-time PCR assays for Polymyxa graminis to examine host plant resistance, inoculum levels and intraspecific variation. New Phytologist. 165 (3), pp. 875-885. https://doi.org/10.1111/j.1469-8137.2004.01291.x

Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens

C2 - Non-edited contributions to conferences

Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. 2004. Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 54

Can biotechnology and genomics offer better routes to crop protection?

G - Articles in popular magazines and other technical publications

Jones, H. D. and Kanyuka, K. 2004. Can biotechnology and genomics offer better routes to crop protection? Outlooks on Pest Management. 15, pp. 217-221.

Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops

C1 - Edited contributions to conferences/learned societies

Hammond-Kosack, K. E., Urban, M., Baldwin, T., Daudi, A., Rudd, J. J., Keon, J., Lucas, J. A., Magiure, K., Kornyukhin, D., Jing, H-C., Bass, C. G. and Antoniw, J. F. 2004. Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26 September-1 October 2004 . Regional Institute, Gosford. pp. www.cropscience.org.au

A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance

A - Papers appearing in refereed journals

Kanyuka, K., Lovell, D. J., Mitrofanova, O. P., Hammond-Kosack, K. E. and Adams, M. J. 2004. A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance. Plant Pathology. 53 (2), pp. 154-160. https://doi.org/10.1111/j.1365-3059.2004.01000.x

Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene

A - Papers appearing in refereed journals

Kanyuka, K., Mcgrann, G. R. D., Alhudaib, K., Hariri, D. and Adams, M. J. 2004. Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene. Archives of Virology. 149, pp. 1469-1480.

Polymyxa graminis and the cereal viruses it transmits: a research challenge

A - Papers appearing in refereed journals

Kanyuka, K., Ward, E. and Adams, M. J. 2003. Polymyxa graminis and the cereal viruses it transmits: a research challenge. Molecular Plant Pathology. 4 (5), pp. 393-406. https://doi.org/10.1046/J.1364-3703.2003.00177.X

The ability of a bymovirus to overcome the rym4- mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1

A - Papers appearing in refereed journals

Kuhne, T., Shi, N., Proeseler, G., Adams, M. J. and Kanyuka, K. 2003. The ability of a bymovirus to overcome the rym4- mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1. Journal of General Virology. 84 (10), pp. 2853-2859. https://doi.org/10.1099/vir.0.19347-0

Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses

A - Papers appearing in refereed journals

Kanyuka, K., Praekelt, U., Franklin, K. A., Billingham, O. E., Hooley, R., Whitelam, G. C. and Halliday, K. J. 2003. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. The Plant Journal. 35 (1), pp. 57-70. https://doi.org/10.1046/j.1365-313X.2003.01779.x