Unraveling the mechanistic complexity of Alzheimer's disease through systems biology

Rollo, J. L., Banihashemi, N., Vafaee, F., Crawford, J. W., Kuncic, Z. and Holsinger, R. M. D. 2016. Unraveling the mechanistic complexity of Alzheimer's disease through systems biology. Alzheimers & Dementia. 12 (6), pp. 708-718. https://doi.org/10.1016/j.jalz.2015.10.010

Related outputs

Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype

A - Papers appearing in refereed journals

Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. 4, pp. 51-60. https://doi.org/10.1038/s43016-022-00671-z

Causal Modeling of Soil Processes for Improved Generalization

Conference paper

Neal, A. L., Sharma, S., Crawford, J. W., Kiciman, E., Malvar, S., Rodriguez, E. and Chandra, R. 2022. Causal Modeling of Soil Processes for Improved Generalization. NeurIPS 2022. New Orleans Conference Center 28 Nov 2022

Evolution of the transport properties of soil aggregates and their relationship with soil organic carbon following land use changes

A - Papers appearing in refereed journals

Wang, F., Zhang, X., Neal, A. L., Crawford, J. W., Mooney, S. and Bacq-Lebreuil, A. 2022. Evolution of the transport properties of soil aggregates and their relationship with soil organic carbon following land use changes. Soil & Tillage Research. 215, p. 105226. https://doi.org/10.1016/j.still.2021.105226

Enterotype-like microbiome stratification as emergent structure in complex adaptive systems: A mathematical model

A - Papers appearing in refereed journals

Martin, M. A., Crawford, J. W., Neal, A. L. and Garcia-Gutierrez-Baez, C. 2021. Enterotype-like microbiome stratification as emergent structure in complex adaptive systems: A mathematical model. Fractals: Complex Geometry, Patterns, and Scaling in Nature and Society. https://doi.org/10.1142/S0218348X21502108

Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen

A - Papers appearing in refereed journals

Zhang, X., Gregory, A. S., Whalley, W. R., Coleman, K., Neal, A. L., Bacq-Labreuil, A., Mooney, S. J., Crawford, J. W., Soga, K. and Illangasekare, T. H. 2021. Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen. Geoderma. 403, p. 115370. https://doi.org/10.1016/j.geoderma.2021.115370

The effects of long-term fertilizations on soil hydraulic properties vary with scales

A - Papers appearing in refereed journals

Zhang, X., Neal, A. L., Crawford, J. W., Bacq-Labreuil, A., Akkari, E. and Rickard, W. 2021. The effects of long-term fertilizations on soil hydraulic properties vary with scales. Journal of Hydrology. 539, p. 125890. https://doi.org/10.1016/j.jhydrol.2020.125890

Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Neal, A. L., Crawford, J. W., Mooney, S. J., Akkari, E., Zhang, X., Clark, I. M. and Ritz, K. 2020. Significant structural evolution of a long-term fallow soil in response to agricultural management practices requires at least 10 years after conversion. European Journal of Soil Science. https://doi.org/10.1111/ejss.13037

Soil as an Extended Composite Phenotype of the Microbial Metagenome

A - Papers appearing in refereed journals

Neal, A. L., Bacq-Labreuil, A., Zhang, X., Clark, I. M., Coleman, K., Mooney, S. J., Ritz, K. and Crawford, J. W. 2020. Soil as an Extended Composite Phenotype of the Microbial Metagenome. Scientific Reports. 10, p. 10649. https://doi.org/10.1038/s41598-020-67631-0

Learning to love the world's most hated crop

A - Papers appearing in refereed journals

Jackson, T. A., Crawford, J. W., Traeholt, C. and Sanders, T. A. B. 2019. Learning to love the world's most hated crop. Journal of Oil Palm Research. 31 (September), pp. 331-347. https://doi.org/10.21894/jopr.2019.0046

Exploring future food provision scenarios for China

A - Papers appearing in refereed journals

Ma, L., Bai, Z., Ma, M., Guo, M., Jiang, R., Liu, J., Oenema, O., Velthof, G. L., Whitmore, A. P., Crawford, J. W., Dobermann, A., Schwoob, M. and Zhang, F. 2019. Exploring future food provision scenarios for China. Environmental Science & Technology. 53 (3), pp. 1385-1393. https://doi.org/10.1021/acs.est.8b04375

Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture. Plant and Soil. 441 (1-2), p. 543–554. https://doi.org/10.1007/s11104-019-04144-4

Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports. 9 (7473). https://doi.org/10.1038/s41598-019-43937-6

Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture.

A - Papers appearing in refereed journals

Bacq-Labreuila, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., McAuliffe, C., Zhang, X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002

Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak

A - Papers appearing in refereed journals

Feng, S., Hossain, L., Crawford, J. W. and Bossomaier, T. 2018. Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak. Disaster Medicine and Public Health Preparedness. 12 (1), pp. 26-37. https://doi.org/10.1017/dmp.2017.29

Water flow across the interface of contrasting materials: Pressure discontinuity and its implications

A - Papers appearing in refereed journals

Li, Z., Wang, D., Zhang, X. and Crawford, J. W. 2018. Water flow across the interface of contrasting materials: Pressure discontinuity and its implications . Journal of Hydrology. 566, pp. 435-440. https://doi.org/10.1016/j.jhydrol.2018.09.029

Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture

A - Papers appearing in refereed journals

Baco-Labreuil, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., Mcauliffe, C., Zhang, X. X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002

A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials

A - Papers appearing in refereed journals

Zhang, X. X., Crawford, J. W., Flavel, R. J. and Young, I. M. 2016. A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials. Journal of Hydrology. 541 (Part B), pp. 1020-1029. https://doi.org/10.1016/j.jhydrol.2016.08.013

A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils

A - Papers appearing in refereed journals

Zhang, X., Crawford, J. W. and Young, I. M. 2016. A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils. Journal of Hydrology. 538, pp. 152-160. https://doi.org/10.1016/j.jhydrol.2016.04.013

Combining micro-bottom-up and macro-top-down modelling responses to nutrient cycles in complex agricultural systems

A - Papers appearing in refereed journals

Burdock, R. P. and Crawford, J. W. 2015. Combining micro-bottom-up and macro-top-down modelling responses to nutrient cycles in complex agricultural systems. Nutrient Cycling in Agroecosystems. 103, pp. 257-278. https://doi.org/10.1007/s10705-015-9739-9

Evolutionary longitudinal network dynamics of global zoonotic research

A - Papers appearing in refereed journals

Hossain, L., Karimi, F., Wigand, R. T. and Crawford, J. W. 2015. Evolutionary longitudinal network dynamics of global zoonotic research. Scientometrics. 103, pp. 337-353. https://doi.org/10.1007/s11192-015-1557-y

Networks of preparedness and response during Australian H1N1 outbreak

A - Papers appearing in refereed journals

Hossain, L., Bdeir, F., Crawford, J. W. and Wigand, R. T. 2015. Networks of preparedness and response during Australian H1N1 outbreak. Disaster Medicine and Public Health Preparedness. 9, pp. 155-165. https://doi.org/10.1017/dmp.2014.88

The knowns, known unknowns and unknowns of sequestration of soil organic carbon

A - Papers appearing in refereed journals

Stockmann, U., Adams, M. A., Crawford, J. W., Field, D. J., Henakaarchchi, N., Jenkins, M., Minasny, B., McBratney, A. B., De Remy De Courcelles, V., Singh, K., Wheeler, I., Abbott, L., Angers, D. A., Baldock, J., Bird, M., Brookes, P. C., Chenu, C., Jastrow, J. D., Lal, R., Lehmann, J., O'donnell, A. G., Parton, W. J., Whitehead, D. and Zimmermann, M. 2013. The knowns, known unknowns and unknowns of sequestration of soil organic carbon. Agriculture, Ecosystems & Environment. 164, pp. 80-99. https://doi.org/10.1016/j.agee.2012.10.001

Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation

A - Papers appearing in refereed journals

Wang, J., Zhang, X., Bengough, A. G. and Crawford, J. W. 2008. Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat and Fluid Flow. 18, pp. 656-672. https://doi.org/10.1108/09615530810879765

Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems

A - Papers appearing in refereed journals

Johnson, S. N., Crawford, J. W., Gregory, P. J., Grinev, D. V., Mankin, R. W., Masters, G. J., Murray, P. J., Wall, D. H. and Xhang, X. X. 2007. Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9 (1), pp. 39-46. https://doi.org/10.1111/j.1461-9563.2006.00315.x

Effects of carbon dioxide on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae)

A - Papers appearing in refereed journals

Johnson, S. N., Zhou, X., Crawford, J. W., Gregory, P. J., Hix, N. J., Jarvis, S. C., Murray, P. J. and Young, I. M. 2006. Effects of carbon dioxide on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96 (4), pp. 361-366. https://doi.org/10.1079/BER2006436

Modelling the movement and survival of the root feeding clover weevil, Sitona lepidus , in the root-zone of white clover

A - Papers appearing in refereed journals

Zhang, X., Johnson, S. N., Gregory, P. J., Crawford, J. W., Young, I. M., Murray, P. J. and Jarvis, S. C. 2006. Modelling the movement and survival of the root feeding clover weevil, Sitona lepidus , in the root-zone of white clover. Ecological Modelling. 190 (1-2), pp. 133-146. https://doi.org/10.1016/j.ecolmodel.2005.01.063

How soil properties affect egg development and larval longevity of a grassland insect pest - an empirically based model

C1 - Edited contributions to conferences/learned societies

Johnson, S. N., Zhang, X., Crawford, J. W., Gregory, P. J. and Young, I. M. 2005. How soil properties affect egg development and larval longevity of a grassland insect pest - an empirically based model. Jarvis, S. C., Murray, P. J. and Roker, J. A. (ed.) Optimisation of nutrient cycling and soil quality for sustainable grasslands. Wageningen Academic Publishers, Wageningen, Netherlands. pp. p63 https://doi.org/10.3920/978-90-8686-556-7