[Book review] Managing soil health for sustainable agriculture Edited by D Reicosky. Burleigh Dodds Series in Agriculture Science, Cambridge, UK, 2018. Volume 1: Fundamentals, £200, hardback, ISBN 9781786761880; Volume 2: Monitoring and Management, £160, hardback, ISBN 9781786761927

Haefele, S. M. 2019. [Book review] Managing soil health for sustainable agriculture Edited by D Reicosky. Burleigh Dodds Series in Agriculture Science, Cambridge, UK, 2018. Volume 1: Fundamentals, £200, hardback, ISBN 9781786761880; Volume 2: Monitoring and Management, £160, hardback, ISBN 9781786761927. European Journal of Soil Science. https://doi.org/10.1111/ejss.12870

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Long-term effects of lime and phosphorus application on soil extractable (Olsen) phosphorus differ between two arable UK soils

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Mehlich 3 as an indicator of grain nutrient concentration for five crops in sub-Saharan Africa

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An interlaboratory comparison of mid-infrared spectra acquisition: Instruments and procedures matter

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Climate change mitigation through soil carbon sequestration in working lands: A reality check

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Landscape and Micronutrient Fertilizer Effect on Agro-Fortified Wheat and Teff Grain Nutrient Concentration in Western Amhara.

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Soil Chemical Properties as Affected by Six Crop Rotation Sequences and Four Residue Levels

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Wheat and teff grain mineral micronutrient concentration and field data from GeoNutrition on-farm field experiments in Western Amhara region, Ethiopia

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Spectral soil analysis for fertilizer recommendations by coupling with QUEFTS for maize in East Africa: A sensitivity analysis

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Albano, X., Whitmore, A. P., Sakrabani, O., Thomas, C. L., Sizmur, T., Ritz, K., Harris, J., Pawlett, M., Watts, C. W. and Haefele, S. M. 2023. Effect of different organic amendments on actual and achievable yields in a cereal-based cropping system. Journal of Soil Science and Plant Nutrition. 23, pp. 2122-2137. https://doi.org/10.1007/s42729-023-01167-w

Regional differences in nitrogen balance and nitrogen use efficiency in the rice–livestock system of Uruguay

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Castillo, J., Kirk, G. J. D., Rivero, M. J. and Haefele, S. M. 2023. Regional differences in nitrogen balance and nitrogen use efficiency in the rice–livestock system of Uruguay. Frontiers in Sustainable Food Systems. 7, p. 1104229. https://doi.org/10.3389/fsufs.2023.1104229

A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy

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Breure, T., Haefele, S. M., Hannam, J. A., Corstanje, R., Webster, R., Moreno-Rojas, S. and Milne, A. E. 2022. A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy. Precision Agriculture. 23, pp. 1333 - 1353. https://doi.org/10.1007/s11119-022-09887-2

Cereal grain mineral micronutrient and soil chemistry data from GeoNutrition surveys in Ethiopia and Malawi

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Portable X-ray fluorescence (pXRF) calibration for analysis of nutrient concentrations and trace element contaminants in fertilisers

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Acquah, G., Hernandez-Allica, J., Thomas, C. L., Dunham, S. J., Towett, E. K., Drake, L. B., Shepherd, K. D., McGrath, S. P. and Haefele, S. M. 2022. Portable X-ray fluorescence (pXRF) calibration for analysis of nutrient concentrations and trace element contaminants in fertilisers. PLOS ONE. 17 (1), p. e0262460. https://doi.org/10.1371/journal.pone.0262460

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Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time

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Prout, J. M., Shepherd, K. D., McGrath, S. P., Kirk, G. J. D., Hassall, K. L. and Haefele, S. M. 2022. Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time. Scientific Reports. 12, p. 5162. https://doi.org/10.1038/s41598-022-09101-3

Biofortification of staple crops to eliminate human malnutrition: contributions and potential in developing countries

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Kiran, A., Wakeel, A., Mahmood, K., Mubaraka, R., Haefele, H. and Haefele, S. M. 2022. Biofortification of staple crops to eliminate human malnutrition: contributions and potential in developing countries. Agronomy. 12 (2), p. 452. https://doi.org/10.3390/agronomy12020452

Long-term fertility experiments for irrigated rice in the West African Sahel: Effect on macro- and micronutrient concentrations in plant and soil

A - Papers appearing in refereed journals

Haefele, S. M., Thomas, C. L. and Saito, K. 2022. Long-term fertility experiments for irrigated rice in the West African Sahel: Effect on macro- and micronutrient concentrations in plant and soil. Field Crops Research. 275 (1 Jan), p. 108357. https://doi.org/10.1016/j.fcr.2021.108357

Comparing the effect of different sample conditions and spectral libraries on the prediction accuracy of soil properties from near- and mid-infrared spectra at the field-scale

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Breure, T. S., Prout, J. M., Haefele, S. M., Milne, A. E., Hannam, J. A., Moreno-Rojas, S. and Corstanje, R. 2022. Comparing the effect of different sample conditions and spectral libraries on the prediction accuracy of soil properties from near- and mid-infrared spectra at the field-scale. Soil & Tillage Research. 215, p. 105196. https://doi.org/10.1016/j.still.2021.105196

How have smallholder farmers used digital extension tools? Developer and user voices from Sub-Saharan Africa, South Asia and Southeast Asia

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Coggins, S., McCampbell, M., Sharma, A., Sharma, R., Haefele, S. M., Karki, E., Hetherington, J., Smith, J. and Brown, B. 2021. How have smallholder farmers used digital extension tools? Developer and user voices from Sub-Saharan Africa, South Asia and Southeast Asia. Global Food Security. 32 (March), p. 100577. https://doi.org/10.1016/j.gfs.2021.100577

Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa

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Cairns, J. E., Baudron, F., Hassall, K. L., Ndhlela, T., Nyagumbo, I., McGrath, S. P. and Haefele, S. M. 2021. Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa. Outlook on Agriculture. 51 (2), pp. 178-182. https://doi.org/10.1177/00307270211045410

Grain yield, plant nitrogen content and nitrogen use efficiency as affected by controlled-release urea and straw biochar in a rice field

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Xin, Y., Ping, Y., Jue, L., Yujie, Z., Shuifeng, Y., Xiaotao, M., Jianqiu, C. and Haefele, S. M. 2021. Grain yield, plant nitrogen content and nitrogen use efficiency as affected by controlled-release urea and straw biochar in a rice field. Journal of Plant Nutrition. 45 (9), pp. 1393-1402. https://doi.org/10.1080/01904167.2021.2014884

The distribution of soil micro-nutrients and the effects on herbage micro-nutrient uptake and yield in three different pasture systems

A - Papers appearing in refereed journals

Thomas, C. L., Darch, T., Harris, P., Beaumont, D. A. and Haefele, S. M. 2021. The distribution of soil micro-nutrients and the effects on herbage micro-nutrient uptake and yield in three different pasture systems. Agronomy. 11 (9), p. 1731. https://doi.org/10.3390/agronomy11091731

The nitrogen economy of rice-livestock systems in Uruguay

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Castillo, J., Kirk, G. J. D., Rivero, M. J., Dobermann, A. and Haefele, S. M. 2021. The nitrogen economy of rice-livestock systems in Uruguay. Global Food Security. 30 (September), p. 100566. https://doi.org/10.1016/j.gfs.2021.100566

Continental-scale controls on soil organic carbon across sub-Saharan Africa

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Von Fromm, S. F., Hoyt, A. M, Lange, M., Acquah, G., Aynekulu, E., Berhe, A. A, Haefele, S. M., McGrath, S. P., Shepherd, K. D., Sila, A. M., Six, J., Towett, E. K, Trumbore, S. E., Vagen, T.-G, Weullow, E., Winowiecki, L. A. and Doetterl, S. 2021. Continental-scale controls on soil organic carbon across sub-Saharan Africa. Soil. 7, pp. 305-332. https://doi.org/10.5194/soil-7-305-2021

Optimizing setup of scan number in FTIR spectroscopy using the moment distance index and PLS regression: application to soil spectroscopy

A - Papers appearing in refereed journals

Barra, I., Khiari, L., Haefele, S. M., Sakrabani, R. and Kebede, F. 2021. Optimizing setup of scan number in FTIR spectroscopy using the moment distance index and PLS regression: application to soil spectroscopy. Scientific Reports. 11, p. 13358. https://doi.org/10.1038/s41598-021-92858-w

The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients

A - Papers appearing in refereed journals

Jordan-Meille, L., Holland, J. E., McGrath, S. P., Glendining, M. J., Thomas, C. L. and Haefele, S. M. 2021. The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients. European Journal of Agronomy. 126, p. 126281. https://doi.org/10.1016/j.eja.2021.126281

The nutritional quality of cereals varies geospatially in Ethiopia and Malawi

A - Papers appearing in refereed journals

Gashu, D., Nalivata, P. C., Amede, T., Ander, E. L., Bailey, E. H., Botoman, L., Chagumaira, C., Gameda, S., Haefele, S. M., Hailu, K., Joy, E. J. M., Kalimbira, A. A., Kumssa, D. B., Lark, R. M., Ligowe, I. S., McGrath, S. P., Milne, A. E., Mossa, A. W., Munthali, M., Towett, E. K., Walsh, M. G., Wilson, L., Young, S. D. and Broadley, M. R. 2021. The nutritional quality of cereals varies geospatially in Ethiopia and Malawi. Nature. 594, pp. 71-76. https://doi.org/10.1038/s41586-021-03559-3

African soil properties and nutrients mapped at 30 m spatial resolution using two-scale ensemble machine learning

A - Papers appearing in refereed journals

Hengl, T., Miller, M. A. E., Krizan, J., Shepherd, K. D., Sila, A., Kilibarda, M., Antonijevic, O., Glusica, L., Dobermann, A., Haefele, S. M., McGrath, S. P., Acquah, G., Collinson, J., Parente, L., Sheykmousa, M., Saito, K., Johnson, J-M., Chamberlain, J., Silatsa, F. B. T., Yemefack, M., Wendt, J., MacMillan, R. A., Wheeler, I. and Crouch, J. 2021. African soil properties and nutrients mapped at 30 m spatial resolution using two-scale ensemble machine learning. Scientific Reports. 11, p. 6130. https://doi.org/10.1038/s41598-021-85639-y

Combining host plant defence with targeted nutrition: key to durable control of hemiparasitic Striga in cereals in sub-Saharan Africa?

A - Papers appearing in refereed journals

Mwangangi, I. M., Buchi, L., Haefele, S. M., Bastiaans, L., Runo, S. and Rodenburg, J. 2021. Combining host plant defence with targeted nutrition: key to durable control of hemiparasitic Striga in cereals in sub-Saharan Africa? New Phytologist. 230 (6), pp. 2164-2178. https://doi.org/10.1111/nph.17271

Liming impacts barley yield over a wide concentration range of soil exchangeable cations

A - Papers appearing in refereed journals

Holland, J. E., White, P .J., Thauvin, J. N., Jordan-Meille, L., Haefele, S. M., Thomas, C. L., Goulding, K. W. T. and McGrath, S. P. 2021. Liming impacts barley yield over a wide concentration range of soil exchangeable cations. Nutrient Cycling in Agroecosystems. 120, pp. 131-144. https://doi.org/10.1007/s10705-020-10117-2

Impact of biochar on nutrient supply, crop yield and microbial respiration on sandy soils of northern Germany

A - Papers appearing in refereed journals

Knoblauch, C., Priyadarshani, S. H. R., Haefele, S. M., Schroder, N. and Pfeiffer, E-M. 2021. Impact of biochar on nutrient supply, crop yield and microbial respiration on sandy soils of northern Germany. European Journal of Soil Science. 72 (4), pp. 1885-1901. https://doi.org/10.1111/ejss.13088

In quest of nitrogen use efficient rice genotypes for drought-prone rainfed ecosystems

A - Papers appearing in refereed journals

Karmaker, B., Haefele, S. M., Henry, A., Kabir, M. H., Islam, A. and Biswas, J. C. 2021. In quest of nitrogen use efficient rice genotypes for drought-prone rainfed ecosystems. Frontiers in Agronomy. 2, p. 607792. https://doi.org/10.3389/fagro.2020.607792

Soil spectroscopy with the use of chemometrics, machine learning and pre-processing techniques in soil diagnosis: Recent advances–A review

A - Papers appearing in refereed journals

Barra, I., Haefele, S. M., Sakrabani, R. and Kebede, F. 2021. Soil spectroscopy with the use of chemometrics, machine learning and pre-processing techniques in soil diagnosis: Recent advances–A review. Trends in Analytical Chemistry - TrAC. 135 (February), p. 116166. https://doi.org/10.1016/j.trac.2020.116166

Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia

A - Papers appearing in refereed journals

Desta, M. K., Broadley, M. R., McGrath, S. P., Hernandez-Allica, J., Hassall, K. L., Gameda. S., Amede. T. and Haefele, S. M. 2021. Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia. Plants - Basel. 10 (2), p. 254. https://doi.org/10.3390/plants10020254

A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils

A - Papers appearing in refereed journals

Thomas, C. L., Hernandez, J. M. B., Dunham, S. J., McGrath, S. P. and Haefele, S. M. 2021. A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils. Scientific Reports. 11 (1), p. 16. https://doi.org/10.1038/s41598-020-79618-y

Predicting the growth of lettuce from soil infrared reflectance spectra: the potential for crop management

A - Papers appearing in refereed journals

Breure, T. S., Milne, A. E., Webster, R., Haefele, S. M., Hannam, J. A., Moreno-Rojas, S. and Corstanje, R. 2021. Predicting the growth of lettuce from soil infrared reflectance spectra: the potential for crop management. Precision Agriculture. 22, p. 226–248. https://doi.org/10.1007/s11119-020-09739-x

Data Study Group Network Final Report: Rothamsted Research

A - Papers appearing in refereed journals

Breure, T., Carmona, C. U., Ellisck, S., Evans, B., Fahmi, A., Haefele, S. M., Hassall, K. L., Loning, M., Ruiz, D. P., Shchepanovska, D. and Thomas, C. L. 2020. Data Study Group Network Final Report: Rothamsted Research. Data Study Group Network Final Report: Rothamsted Research. Zenodo. https://doi.org/10.5281/zenodo.3775489

Non‐flooding rice yield response to straw biochar and controlled‐release fertilizer

A - Papers appearing in refereed journals

Yang, X., Liu, H., Mao, X., Deng, J. and Haefele, S. M. 2020. Non‐flooding rice yield response to straw biochar and controlled‐release fertilizer. Agronomy Journal. 112 (6), pp. 4799-4809. https://doi.org/10.1002/agj2.20430

Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning

A - Papers appearing in refereed journals

Towett, E. K., Drake, L. B., Acquah, G., Haefele, S. M., McGrath, S. P. and Shepherd, K. D. 2020. Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning. PLOS ONE. 15 (12), p. e0242821. https://doi.org/10.1371/journal.pone.0242821

What is a good level of soil organic matter? An index based on organic carbon to clay ratio

A - Papers appearing in refereed journals

Prout, J. M., Shepherd, K. D., McGrath, S. P., Kirk, G. J. D. and Haefele, S. M. 2020. What is a good level of soil organic matter? An index based on organic carbon to clay ratio. European Journal of Soil Science. pp. 1-11. https://doi.org/10.1111/ejss.13012

Understanding the interactions between biomass, grain production and grain protein content in high and low protein wheat genotypes under controlled environments.

A - Papers appearing in refereed journals

Eichi, V. R., Okamato, M., Haefele, S. M., Jewell, N., Brien, C., Garnett, T. and Langridge, P. 2019. Understanding the interactions between biomass, grain production and grain protein content in high and low protein wheat genotypes under controlled environments. Agronomy. 9 (11), p. 706. https://doi.org/10.3390/agronomy9110706

The Effect of Different Organic Fertilizers on Yield and Soil and Crop Nutrient Concentrations

A - Papers appearing in refereed journals

Thomas, C. L., Acquah, G., Whitmore, A. P., McGrath, S. P. and Haefele, S. M. 2019. The Effect of Different Organic Fertilizers on Yield and Soil and Crop Nutrient Concentrations. Agronomy. 9 (12), p. 776. https://doi.org/10.3390/agronomy9120776

DREB/CBF expression in wheat and barley using the stress-inducible promoters of HD-Zip I genes: impact on plant development, stress tolerance and yield

A - Papers appearing in refereed journals

Yang, Y., Al-Baidhani, H. H. J., Harris, J., Riboni, M., Li, Y., Mazonka, I., Bazanova, N., Chirkova, L., Hussain, S. S., Hrmova, M., Haefele, S. M., Lopato, S. and Kovalchuk, N. 2019. DREB/CBF expression in wheat and barley using the stress-inducible promoters of HD-Zip I genes: impact on plant development, stress tolerance and yield. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13252

Synergy of reduced gypsum and pressmud – a cost effective approach for sustainable reclamation of degraded sodic lands

A - Papers appearing in refereed journals

Singh, Y. P., Mishra, V. K., Bharadwaj, A. K., Arora, S., Singh, A. K., Singh, S., Singh, U. S., Ismail, A. M. and Haefele, S. M. 2019. Synergy of reduced gypsum and pressmud – a cost effective approach for sustainable reclamation of degraded sodic lands. Indian Journal of Agricultural Sciences. 89 (6).

Genome-wide association mapping of grain yield in a diverse collection of spring wheat (Triticum aestivum L.) evaluated in southern Australia

A - Papers appearing in refereed journals

Garcia, M., Eckermann, P., Haefele, S. M., Satija, S., Sznaidjer, B., Timmins, A., Baumann, U., Wolters, P., Mather, D .E. and Fleury, D. 2019. Genome-wide association mapping of grain yield in a diverse collection of spring wheat (Triticum aestivum L.) evaluated in southern Australia. PLOS ONE. 14 (2), p. e0211730. https://doi.org/10.1371/journal.pone.0211730

Estimation of vegetation indices for high-throughput phenotyping of wheat breeding lines using aerial imaging.

A - Papers appearing in refereed journals

Khan, Z., Rahimi-Eichi, V., Haefele, S. M., Garnett, T. and Miklavcic, S. J. 2018. Estimation of vegetation indices for high-throughput phenotyping of wheat breeding lines using aerial imaging. Plant Methods. 14, p. 20. https://doi.org/10.1186/s13007-018-0287-6

Quantitative Estimation of Wheat Phenotyping Traits Using Ground and Aerial Imagery

A - Papers appearing in refereed journals

Khan, Z., Chopin, J., Cai, J., Rahimi-Fichi, V., Laga, H., Haefele, S. M. and Miklavcic, S. J. 2018. Quantitative Estimation of Wheat Phenotyping Traits Using Ground and Aerial Imagery. Remote Sensing. 10 (6), p. 950. https://doi.org/10.3390/rs10060950

Site-specific nutrient management enhances sink size, a major yield constraint in rainfed lowland rice

A - Papers appearing in refereed journals

Banayo, N. P. M. C., Bueno, C. S., Haefele, S. M., Desamero, N. V. and Kato, Y. 2018. Site-specific nutrient management enhances sink size, a major yield constraint in rainfed lowland rice. Field Crops Research. 224 (1 July), pp. 76-79. https://doi.org/10.1016/j.fcr.2018.05.006

Participatory evaluation guides the development and selection of farmers’ preferred rice varieties for salt- and flood-affected coastal deltas of South and Southeast Asia

A - Papers appearing in refereed journals

Burman, D., Maji, B., Singh, Sudhanshu, Mandal, Subhasis, Sarangi, Sukanta K., Bandyopadhyay, B. K., Bal, A. R., Sharma, D. K., Krishnamurthy, S. L., Singh, H. N., delosReyes, A. S., Villanueva, D., Paris, T., Singh, U. S., Haefele, S. M. and Ismail, Abdelbagi M. 2018. Participatory evaluation guides the development and selection of farmers’ preferred rice varieties for salt- and flood-affected coastal deltas of South and Southeast Asia. Field Crops Research. 220, pp. 67-77. https://doi.org/10.1016/j.fcr.2017.03.009

Overexpression of the class I homeodomain transcription factor TaHDZipI‐5 increases drought and frost tolerance in transgenic wheat

A - Papers appearing in refereed journals

Yang, Y., Luang, S., Harris, J., Riboni, M., Li, Y., Bazanova, N., Hrmova, M., Haefele, S. M., Kovalchuk, N. and Lopato, S. 2017. Overexpression of the class I homeodomain transcription factor TaHDZipI‐5 increases drought and frost tolerance in transgenic wheat. Plant Biotechnology Journal. 16 (6), pp. 1227-1240. https://doi.org/10.1111/pbi.12865

A Survey: Potential Impact of Genetically Modified Maize Tolerant to Drought or Resistant to Stem Borers in Uganda

A - Papers appearing in refereed journals

Wamatsembe, I., Asea, G. and Haefele, S. M. 2017. A Survey: Potential Impact of Genetically Modified Maize Tolerant to Drought or Resistant to Stem Borers in Uganda. Agronomy. 7 (1), p. 24. https://doi.org/10.3390/agronomy7010024

On-farm assessment of site-specific nutrient management for rainfed lowland rice in the Philippines

A - Papers appearing in refereed journals

Banayo, N. P. M. C., Haefele, S. M., Desamero, N. V. and Kato, Y. 2017. On-farm assessment of site-specific nutrient management for rainfed lowland rice in the Philippines. Field Crops Research. 220, pp. 88-96. https://doi.org/10.1016/j.fcr.2017.09.011

Timing of weed management and yield losses due to weeds in irrigated rice in the Sahel

A - Papers appearing in refereed journals

Johnson, D. E., Wopereis, M. C. S., Mbodj, D., Diallo, S., Powers, S. J. and Haefele, S. M. 2004. Timing of weed management and yield losses due to weeds in irrigated rice in the Sahel. Field Crops Research. 85 (1), pp. 31-42. https://doi.org/10.1016/S0378-4290(03)00124-2