Genome-Wide In Silico Analysis of Leucine-Rich Repeat R-Genes in Perilla citriodora: Classification and Expression Insights

A - Papers appearing in refereed journals

Bae, S.-H., Zoclanclounon, A., Park, G-H., Lee, J-D. and Kim, T-H. 2025. Genome-Wide In Silico Analysis of Leucine-Rich Repeat R-Genes in Perilla citriodora: Classification and Expression Insights. Genes. 16 (2), p. 200. https://doi.org/10.3390/genes16020200

AuthorsBae, S.-H., Zoclanclounon, A., Park, G-H., Lee, J-D. and Kim, T-H.
Abstract

Background: Resistance (R) genes are crucial for defending Perilla against pathogens like anthracnose, downy mildew, and phytophthora blight. Nucleotide-binding site leucine-rich repeat (NBS-LRR) genes, the largest R-gene family, play a central role in immunity. This study aimed to identify and characterize NBS-LRR genes in P. citriodora ‘Jeju17’.

Methods: Previously conducted genome-wide data for ‘Jeju17’ were analyzed in silico to identify NBS-LRR genes.
Results: A total of 535 NBS-LRR genes were identified,with clusters on chromosomes 2, 4, and 10. A unique RPW8-type R-gene was located on chromosome 7.

Conclusions: This study provides insights into
the NBS-LRR gene family in ‘Je-ju17’, highlighting its role in disease resistance and evolutionary dynamics. By identifying candidate R-genes, this research supports breeding programs to develop disease-resistant cultivars and improves our understanding of plant immunity.

KeywordsDisease resistance; Nucleotide-binding site leucine-rich repeat (NBS-LRR); Resistance genes (R-genes); Genomic distribution; Tissue-specific expression; Perilla citriodora genome
Year of Publication2025
JournalGenes
Journal citation16 (2), p. 200
Digital Object Identifier (DOI)https://doi.org/10.3390/genes16020200
Open accessPublished as ‘gold’ (paid) open access
Publisher's version
Output statusPublished
Publication dates
Online06 Feb 2025
Publication process dates
Accepted25 Jan 2025
PublisherMDPI
ISSN2073-4425

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