Application of statistical methods to predictive biology

Project (past)

Project dates01 Apr 2008 to end of 31 Mar 2012
FunderBiotechnology and Biological Sciences Research Council
Project number4937
S4937
DepartmentBiomathematics and Bioinformatics (BAB)
Research fish codeBBS/E/C/00004937
Grant IDBBS/E/C/00004937

Outputs

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Analysis of leaf appearance, leaf death and phoma leaf spot, caused by Leptosphaeria maculans, on oilseed rape (Brassica napus) cultivars

A - Papers appearing in refereed journals
Powers, S. J., Pirie, E. J., Latunde-Dada, A. O. and Fitt, B. D. L. 2010. Analysis of leaf appearance, leaf death and phoma leaf spot, caused by Leptosphaeria maculans, on oilseed rape (Brassica napus) cultivars. Annals of Applied Biology - AAB. 157 (1), pp. 55-70. https://doi.org/10.1111/j.1744-7348.2010.00409.x

The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome

C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .

A numerical optimization method to estimate the spatial distribution of an epidemic

C2 - Non-edited contributions to conferences
Parnell, S. R., Gottwald, T. R. and Van Den Bosch, F. 2009. A numerical optimization method to estimate the spatial distribution of an epidemic. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Real-time quantitative RT-PCR: design, calculations and statistics

A - Papers appearing in refereed journals
Rieu, I. and Powers, S. J. 2009. Real-time quantitative RT-PCR: design, calculations and statistics. The Plant Cell. 21, pp. 1031-1033. https://doi.org/10.1105/tpc.109.066001

Effects of genotype and environment on free amino acid levels in wheat grain: implications for acrylamide formation during processing

A - Papers appearing in refereed journals
Curtis, T. Y., Muttucumaru, N., Shewry, P. R., Parry, M. A. J., Powers, S. J., Elmore, J. S., Mottram, D. S., Hook, S. and Halford, N. G. 2009. Effects of genotype and environment on free amino acid levels in wheat grain: implications for acrylamide formation during processing. Journal of Agricultural and Food Chemistry - JAFC. 57, pp. 1013-1021. https://doi.org/10.1021/jf8031292

Establishing substantial equivalence: transcriptomics

B - Book chapters etc edited externally
Baudo, M. M., Powers, S. J. and Mitchell, R. A. C. 2008. Establishing substantial equivalence: transcriptomics. in: Shewry, P. R. and Jones, H. D. (ed.) Transgenic wheat, barley and oats. Methods in molecular biology, vol. 478 Humana Press, New York. pp. 247-272

GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis

A - Papers appearing in refereed journals
Zhang, Y., Wang, Y., Kanyuka, K., Parry, M. A. J., Powers, S. J. and Halford, N. G. 2008. GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis. Journal of Experimental Botany. 59 (11), pp. 3131-3141. https://doi.org/10.1093/jxb/ern169

The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis lifecycle

A - Papers appearing in refereed journals
Rieu, I., Ruiz-Rivero, O., Fernandez-Garcia, N., Griffiths, J., Powers, S. J., Gong, F., Linhartova, T., Eriksson, S., Nilsson, O., Thomas, S. G., Phillips, A. L. and Hedden, P. 2008. The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis lifecycle. The Plant Journal. 53 (3), pp. 488-504. https://doi.org/10.1111/j.1365-313X.2007.03356.x