Optimisation of nutrients in soil-plant systems: How can we control nitrogen cycling in soil?
Project (past)
| Project dates | 01 Apr 2012 to end of 31 Mar 2017 |
|---|---|
| Researchers | |
| Principal Investigator | Penny Hirsch |
| Funder | Biotechnology and Biological Sciences Research Council |
| Project number | S5196 |
| 5196 | |
| Department | Agroecology (AGEC) |
| Research fish code | BBS/E/C/00005196 |
| Grant ID | BBS/E/C/00005196 |
Outputs
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A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Devonshire, J., Ward, E. and Hirsch, P. R. 2014. A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia. Nematology. 16, pp. 1059-1067. https://doi.org/10.1163/15685411-00002830
A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Armenise, E., White, Robin P., Hirsch, P. R. and Goulding, K. W. T. 2013. A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts. Soil Biology and Biochemistry. 67, pp. 166-173. https://doi.org/10.1016/j.soilbio.2013.08.017
Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities
A - Papers appearing in refereed journals
De Vries, F. T., Manning, P., Tallowin, J. R. B., Mortimer, S. R., Pilgrim, E. S., Harrison, K. A., Hobbs, P. J., Quirk, H., Shipley, B., Cornelissen, J. H. C., Kattge, J. and Bardgett, R. D. 2012. Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities. Ecology Letters. 15 (11), pp. 1230-1239. https://doi.org/10.1111/j.1461-0248.2012.01844.x
Ammonia volatilization following dairy slurry application to a permanent grassland on a volcanic soil
A - Papers appearing in refereed journals
Martinez-Lagos, J., Salazar, F., Alfaro, M. and Misselbrook, T. H. 2013. Ammonia volatilization following dairy slurry application to a permanent grassland on a volcanic soil. Atmospheric Environment. 80, pp. 226-231. https://doi.org/10.1016/j.atmosenv.2013.08.005
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038
An enhanced software tool to support better use of manure nutrients: MANNER- NPK
A - Papers appearing in refereed journals
Nicholson, F. A., Bhogal, A., Chadwick, D. R., Gill, E., Gooday, R. D., Lord, E., Misselbrook, T. H., Rollett, A. J., Sagoo, E., Smith, K. A., Thorman, R. E., Williams, J. R. and Chambers, B. J. 2013. An enhanced software tool to support better use of manure nutrients: MANNER- NPK. Soil Use and Management. 29 (4), pp. 473-484. https://doi.org/10.1111/sum.12078
Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Roberts, R., Powers, S. J. and Hirsch, P. R. 2014. Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods. Letters in Applied Microbiology. 59 (2), pp. 238-246. https://doi.org/10.1111/lam.12270
Base cations and micronutrients in soil aggregates as affected by enhanced nitrogen and water inputs in a semi-arid steppe grassland
A - Papers appearing in refereed journals
Wang, R. Z., Dungait, J. A. J., Buss, H. L., Yang, S., Zhang, Y. G., Xu, Z. W. and Jiang, Y. 2017. Base cations and micronutrients in soil aggregates as affected by enhanced nitrogen and water inputs in a semi-arid steppe grassland. Science of the Total Environment. 575 (1 January), pp. 564-572. https://doi.org/10.1016/j.scitotenv.2016.09.018
Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere
A - Papers appearing in refereed journals
Neal, A. L., Ahmad, S., Gordon-Weeks, R. and Ton, J. 2012. Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLOS ONE. 7, p. e35498 (10pp). https://doi.org/10.1371/journal.pone.0035498
Biodiesel co-product (BCP) decreases soil nitrogen (N) losses to groundwater
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Armenise, E., Hirsch, P. R. and Brookes, P. C. 2014. Biodiesel co-product (BCP) decreases soil nitrogen (N) losses to groundwater. Water Air And Soil Pollution. 225, p. 1831. https://doi.org/10.1007/s11270-013-1831-7
Biology and host-parasite interactions
B - Book chapters etc edited externally
Perry, R. N. and Tovar-Soto, A. 2012. Biology and host-parasite interactions. in: Manzanilla-Lopez, R. H. and Marban-Mendoza, N. (ed.) Practical plant nematology Biblioteca Basica de Agricultura, Montecillo. pp. 1-24
Brazilian Microbiome Project: revealing the unexplored microbial diversity - challenges and prospects
A - Papers appearing in refereed journals
Pylro, V. S., Roesch, L. F. W., Ortega, J. M., Do Amaral, A. M., Totola, M. R., Hirsch, P. R., Rosado, A. S., Goes-Neto, A., Da Costa Da Silva, A. L., Rosa, C. A., Morais, D. K., Andreote, F. D., Duarte, G. F., De Melo, I. S., Seldin, L., Lambais, M. R., Hungria, M., Peixoto, R. S., Kruger, R. H., Tsai, S. M. and Azevedo, V. 2014. Brazilian Microbiome Project: revealing the unexplored microbial diversity - challenges and prospects. Microbial Ecology. 67, pp. 237-241. https://doi.org/10.1007/s00248-013-0302-4
Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments
A - Papers appearing in refereed journals
Zhalnina, K., De Quadros, P. D., Gano, K. A., Davis-Richardson, A., Fagen, J. R., Brown, C. T., Giongo, A., Drew, J. C., Sayavedra-Soto, L. A., Arp, D. J., Camargo, F. A. O., Daroub, S. H., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2013. Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments. Frontiers in Microbiology. 4, p. 104. https://doi.org/10.3389/fmicb.2013.00104
Carbon and nitrogen dynamics in soil aggregates under long-term nitrogen and water addition in a temperate steppe
A - Papers appearing in refereed journals
Wang, R., Dungait, J. A. J., Creamer, C. A., Cai, J., Li, B., Xu, Z., Zhang, Y., Ma, Y. and Jiang, Y. 2015. Carbon and nitrogen dynamics in soil aggregates under long-term nitrogen and water addition in a temperate steppe. Soil Science Society of America Journal. 79 (2), pp. 527-535. https://doi.org/10.2136/sssaj2014.09.0351
Carbon and nitrogen in soil and vine roots in harrowed and grass-covered vineyards
A - Papers appearing in refereed journals
Agnelli, A., Bol, R., Trumbore, S. E., Dixon, E. R., Cocco, S. and Corti, G. 2014. Carbon and nitrogen in soil and vine roots in harrowed and grass-covered vineyards. Agriculture, Ecosystems & Environment. 193, pp. 70-82. https://doi.org/10.1016/j.agee.2014.04.023
Case study: Reducing the environmental impacts of excessive nitrogen fertiliser use in China
D1 - Technical reports: non-confidential
Powlson, D. S. 2013. Case study: Reducing the environmental impacts of excessive nitrogen fertiliser use in China. Centre for Ecology & Hydrology (CEH), Edinburgh .
Changes in soil organic matter over 70 years in continuous arable and ley–arable rotations on a sandy loam soil in England
A - Papers appearing in refereed journals
Johnston, A. E., Poulton, P. R., Coleman, K., Macdonald, A. J. and White, R. P. 2017. Changes in soil organic matter over 70 years in continuous arable and ley–arable rotations on a sandy loam soil in England. European Journal of Soil Science. 68 (3), pp. 305-316. https://doi.org/10.1111/ejss.12415
Chemical and non-chemical tactics to control plant-parasitic nematodes
B - Book chapters etc edited externally
Marban-Mendoza, N. and Manzanilla-Lopez, R. H. 2012. Chemical and non-chemical tactics to control plant-parasitic nematodes. in: Manzanilla-Lopez, R. H. and Marban-Mendoza, N. (ed.) Practical plant nematology Biblioteca Basica de Agricultura, Montecillo. pp. 729-759
Comparing N2O fluxes from recently created extensive grasslands and sites remaining under intensive agricultural management
A - Papers appearing in refereed journals
Horrocks, C. A., Dungait, J. A. J., Heal, K. V. and Cardenas, L. M. 2015. Comparing N2O fluxes from recently created extensive grasslands and sites remaining under intensive agricultural management. Agriculture, Ecosystems & Environment. 199, pp. 77-84. https://doi.org/10.1016/j.agee.2014.08.018
Contribution of improved nitrogen fertilizer use to development of a low carbon economy in China
G - Articles in popular magazines and other technical publications
Powlson, D. S., Norse, D., Chadwick, D. R., Lu, Y., Zhang, W., Zhang, F., Huang, J. and Jia, X. 2014. Contribution of improved nitrogen fertilizer use to development of a low carbon economy in China. World Agriculture. 4 (2), pp. 10-18.
Data analysis for 16S microbial profiling from different benchtop sequencing platforms
A - Papers appearing in refereed journals
Pylro, V. S., Roesch, L. F. W., Morais, D. K., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2014. Data analysis for 16S microbial profiling from different benchtop sequencing platforms. Journal of Microbiological Methods. 107 (December), pp. 30-37. https://doi.org/10.1016/j.mimet.2014.08.018
Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat
N - Datasets
Reid, T., Kavamura, V. N., Torres-Ballesteros, A., Smith, M., Abadie, M., Pawlett, M., Clark, I. M., Harris, J. A. and Mauchline, T. H. 2024. Data for: Agricultural intensification reduces selection of putative plant growth-promoting rhizobacteria in wheat. https://doi.org/10.23637/rothamsted.98zz7
Defining the wheat microbiome: towards microbiome-facilitated crop production
A - Papers appearing in refereed journals
Kavamura, V. N., Mendes, R., Bargaz, A. and Mauchline, T. H. 2021. Defining the wheat microbiome: towards microbiome-facilitated crop production. Computational and structural biotechnology journal. 19, pp. 1200-1213. https://doi.org/10.1016/j.csbj.2021.01.045
Differences in one-, two- and three-dimensional modeling of root growth for estimating water and nutrient uptake and the carbon cycle
B - Book chapters etc edited externally
Wu, L. and Bingham, I. J. 2013. Differences in one-, two- and three-dimensional modeling of root growth for estimating water and nutrient uptake and the carbon cycle. in: Ahuja, L. R. and Timlin, D. (ed.) Enhancing understanding and quantification of soil-root growth interactions. (Advances in Agricultural Systems Modeling 4) American Society of Agronomy (ASA) Madison Wisconsin. pp. 119-153
Disaggregated N2O emission factors in China based on cropping parameters create a robust approach to the IPCC Tier 2 methodology
A - Papers appearing in refereed journals
Shepherd, A., Yan, X., Nayak, D., Newbold, J., Moran, D., Dhanoa, M. S., Goulding, K. W. T., Smith, P. and Cardenas, L. M. 2015. Disaggregated N2O emission factors in China based on cropping parameters create a robust approach to the IPCC Tier 2 methodology. Atmospheric Environment. 122, pp. 272-281. https://doi.org/10.1016/j.atmosenv.2015.09.054
Editorial: Chinese virtual issue
A - Papers appearing in refereed journals
Pan, B., Wang, Q. and Zhao, F-J. 2012. Editorial: Chinese virtual issue. European Journal of Soil Science. 63 (6), pp. 773-775. https://doi.org/10.1111/ejss.12011
Effect in vitro of tomato root diffusate on Pochonia chlamydosporia growth and Meloidogyne incognita egg parasitism
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H. and Powers, S. J. 2013. Effect in vitro of tomato root diffusate on Pochonia chlamydosporia growth and Meloidogyne incognita egg parasitism. Abstracts ONTA XLV Annual Meeting, La Serena, Chile, 20-25 October 2013 . pp. 64
Effect of land use on the abundance and diversity of autotrophic bacteria as measured by ribulose-1,5-biphosphate carboxylase/oxygenase (RubisCO) large subunit gene abundance in soils
A - Papers appearing in refereed journals
Yuan, H., Ge, T., Zou, S., Wu, X., Liu, S., Zhou, P., Chen, X., Brookes, P. C. and Wu, J. 2013. Effect of land use on the abundance and diversity of autotrophic bacteria as measured by ribulose-1,5-biphosphate carboxylase/oxygenase (RubisCO) large subunit gene abundance in soils. Biology And Fertility Of Soils. 49, pp. 609-616. https://doi.org/10.1007/s00374-012-0750-x
Effect of temperature, pH, carbon and nitrogen ratios on the parasitic activity of Pochonia chlamydosporia on Meloidogyne incognita
A - Papers appearing in refereed journals
Luambano, N. D., Manzanilla-Lopez, R. H., Kimenju, J. W., Powers, S. J., Narla, R. D., Wanjohi, W. J. and Kerry, B. R. 2015. Effect of temperature, pH, carbon and nitrogen ratios on the parasitic activity of Pochonia chlamydosporia on Meloidogyne incognita. Biological Control. 80, pp. 23-29. https://doi.org/10.1016/j.biocontrol.2014.09.003
Effectiveness of urease inhibition on the abatement of ammonia, nitrous oxide and nitric acid emissions in a non-irrigated Mediterranean barley field
A - Papers appearing in refereed journals
Abalos, D., Sanz-Cobena, A., Misselbrook, T. H. and Vallejo, A. 2012. Effectiveness of urease inhibition on the abatement of ammonia, nitrous oxide and nitric acid emissions in a non-irrigated Mediterranean barley field. Chemosphere. 89, pp. 310-318. https://doi.org/10.1016/j.chemosphere.2012.04.043
Effecto de extractos vegetales en crudo en el parasitismo de Pochonia chlamydosporia var. chlamydosporia sobre Meloidogyne incognita
A - Papers appearing in refereed journals
Vilchis-Martinez, K., Manzanilla-Lopez, R. H., Powers, S. J. and Montes-Belmont, R. 2013. Effecto de extractos vegetales en crudo en el parasitismo de Pochonia chlamydosporia var. chlamydosporia sobre Meloidogyne incognita. Nematropica. 43, pp. 254-260.
Effects of a winter or spring sowing date on soil nitrogen utilisation and yield of barley following a forage crop of red clover, lucerne or hybrid ryegrass
A - Papers appearing in refereed journals
Marley, C. L., Fychan, R., Theobald, V. J., Cuttle, S. P. and Sanderson, R. 2013. Effects of a winter or spring sowing date on soil nitrogen utilisation and yield of barley following a forage crop of red clover, lucerne or hybrid ryegrass. Agriculture, Ecosystems & Environment. 181, pp. 213-222. https://doi.org/10.1016/j.agee.2013.10.006
Effects of temperature and dairy cattle excreta characteristics on potential ammonia and greenhouse gas emissions from housing - A laboratory study
A - Papers appearing in refereed journals
Pereira, J., Misselbrook, T. H., Chadwick, D., Coutinho, J. and Trindade, H. 2012. Effects of temperature and dairy cattle excreta characteristics on potential ammonia and greenhouse gas emissions from housing - A laboratory study. Biosystems Engineering. 112 (2), pp. 138-150. https://doi.org/10.1016/j.biosystemseng.2012.03.011
Effluent quality and ammonia emissions from out-wintering pads in England, Wales and Ireland
A - Papers appearing in refereed journals
Dumont, P. A., Chadwick, D. R., Misselbrook, T. H., Robinson, J. S., Smith, K. A., Sagoo, E., Camp, V., Murray, R., French, P., Hill, R. A. and Scott, A. 2012. Effluent quality and ammonia emissions from out-wintering pads in England, Wales and Ireland. Agriculture, Ecosystems & Environment. 160, pp. 82-90. https://doi.org/10.1016/j.agee.2012.04.019
Engineering soil organic matter quality: Biodiesel Co-Product (BCP) stimulates exudation of nitrogenous microbial biopolymers
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Evershed, R. P., Kuhl, A., Armenise, E., White, Robin P., Hirsch, P. R., Goulding, K. W. T. and Brookes, P. C. 2015. Engineering soil organic matter quality: Biodiesel Co-Product (BCP) stimulates exudation of nitrogenous microbial biopolymers. Geoderma. 259-260, pp. 205-212. https://doi.org/10.1016/j.geoderma.2015.06.006
Enhanced nitrogen deposition over China
A - Papers appearing in refereed journals
Liu, X., Zhang, Y., Han, W., Tang, A., Shen, J., Cui, J., Vitousek, P., Erisman, J. W., Goulding, K. W. T., Christie, P., Fangmeier, A. and Zhang, F. 2013. Enhanced nitrogen deposition over China. Nature. 494, pp. 459-463. https://doi.org/10.1038/nature11917
Exploitation of endophytes for sustainable agricultural intensification Exploitation of endophytes
A - Papers appearing in refereed journals
Le Cocq, K., Gurr, S. J., Hirsch, P. R. and Mauchline, T. H. 2017. Exploitation of endophytes for sustainable agricultural intensification Exploitation of endophytes. Molecular Plant Pathology. 18 (3), pp. 469-473. https://doi.org/10.1111/mpp.12483
Farmer awareness of plant-parasitic nematodes
G - Articles in popular magazines and other technical publications
Manzanilla-Lopez, R. H. 2012. Farmer awareness of plant-parasitic nematodes.
First 20 years of DNDC (DeNitrification DeComposition): model evolution
A - Papers appearing in refereed journals
Gilhespy, S. L., Anthony, S., Cardenas, L. M., Chadwick, D., Del Prado, A., Li, C., Misselbrook, T. H., Rees, R. M., Salas, W., Sanz-Cobena, A., Smith, P., Tilston, E. L., Topp, C. F. E., Vetter, S. and Yeluripati, J. B. 2014. First 20 years of DNDC (DeNitrification DeComposition): model evolution. Ecological Modelling. 292, pp. 51-62. https://doi.org/10.1016/j.ecolmodel.2014.09.004
First 20 years of DNDC: model evolution and GRAMP
C2 - Non-edited contributions to conferences
Gilhespy, S. L., Anthony, S. G., Cardenas, L. M., Chadwick, D. R., Del Prado, A., Li, C., Misselbrook, T. H., Rees, R., Salas, W., Sanz-Cobena, A., Smith, P., Tilston, E. L., Topp, K., Vetter, S. H. and Yeluripati, J. 2014. First 20 years of DNDC: model evolution and GRAMP. Cordovil, C. M. d. S. (ed.) Abstracts 18th Nitrogen Workshop, Lisbon, 30 June- 3 July 2014 . pp. 100-103