Cropping Carbon (CC) [ISPG]

Project (past)

Researchers
Principal InvestigatorAngela Karp
Project numberS5199
S5201
S5214
S6063
S6066
DepartmentRothamsted Research
Research fish codeBB/J004278/1[donotuse]
Grant IDBB/J004278/1

Outputs

Sort by: Date Title

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

A - Papers appearing in refereed journals
Beste, D. J. V., Noh, K., Niedenfuhr, S., Mendum, T. A., Hawkins, N. D., Ward, J. L., Beale, M. H., Wiechert, W. and Mcfadden, J. 2013. 13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis. Chemistry and Biology. 20 (8), pp. 1012-1021. https://doi.org/10.1016/j.chembiol.2013.06.012

A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers

A - Papers appearing in refereed journals
Hanley, S. J., Barker, J. H. A., Van Ooijen, J. W., Aldam, C., Harris, S. L., Ahman, I., Larsson, S. and Karp, A. 2002. A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers. Theoretical and Applied Genetics. 105 (6-7), pp. 1087-1096. https://doi.org/10.1007/s00122-002-0979-0

A genome-wide metabolomic resource for tomato fruit from Solanum pennellii

A - Papers appearing in refereed journals
Perez-Fons, L., Wells, T., Corol, D. I., Ward, J. L., Gerrish, C., Beale, M. H., Seymour, G. B., Bramley, P. M. and Fraser, P. D. 2014. A genome-wide metabolomic resource for tomato fruit from Solanum pennellii. Scientific Reports. 4, p. 3859. https://doi.org/10.1038/srep03859

A high degree of genetic diversity is revealed in Isatis spp. (dyer's woad) by amplified fragment length polymorphism (AFLP)

A - Papers appearing in refereed journals
Gilbert, K. G., Garton, S., Karam, M. A., Arnold, G. M., Karp, A., Edwards, K. J., Cooke, D. T. and Barker, J. H. A. 2002. A high degree of genetic diversity is revealed in Isatis spp. (dyer's woad) by amplified fragment length polymorphism (AFLP). Theoretical and Applied Genetics. 104 (6-7), pp. 1150-1156. https://doi.org/10.1007/s00122-001-0863-3

A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow

A - Papers appearing in refereed journals
Cerasuolo, M., Richter, G. M., Cunniff, J., Purdy, S., Shield, I. F. and Karp, A. 2013. A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow. Agricultural and Forest Meteorology. 173, pp. 127-138. https://doi.org/10.1016/j.agrformet.2012.11.022

A single residue change leads to a hydroxylated product from the class II diterpene cyclization catalyzed by abietadiene synthase

A - Papers appearing in refereed journals
Criswell, J., Potter, K., Shephard, F., Beale, M. H. and Peters, R. J. 2012. A single residue change leads to a hydroxylated product from the class II diterpene cyclization catalyzed by abietadiene synthase. Organic Letters. 14, pp. 5828-5831. https://doi.org/10.1021/ol3026022

A willow UDP-glycosyltransferase involved in salicinoid biosynthesis

A - Papers appearing in refereed journals
Kulasekaran, S., Cerezo-Medina, S., Harflett, C., Lomax, C., DeJong, F., Rendour, A., Ruvo, G., Hanley, S. J., Beale, M. H. and Ward, J. L. 2020. A willow UDP-glycosyltransferase involved in salicinoid biosynthesis. Journal of Experimental Botany. 72 (5), p. 1634–1648. https://doi.org/10.1093/jxb/eraa562

Acutifoliside, a novel benzoic acid glycoside from Salix acutifolia

A - Papers appearing in refereed journals
Wu, Y., Dobermann, D., Beale, M. H. and Ward, J. L. 2016. Acutifoliside, a novel benzoic acid glycoside from Salix acutifolia. Natural Product Research. 30 (15), pp. 1731-1739. https://doi.org/10.1080/14786419.2015.1137571

An assessment of subsoil organic carbon stocks in England and Wales

A - Papers appearing in refereed journals
Gregory, A. S., Kirk, G. J. D., Keay, C. A., Rawlins, B. G., Wallace, P. and Whitmore, A. P. 2014. An assessment of subsoil organic carbon stocks in England and Wales. Soil Use and Management. 30 (1), pp. 10-22. https://doi.org/10.1111/sum.12085

An efficient high throughput metabotyping platform for screening of biomass willows

A - Papers appearing in refereed journals
Corol, D. I., Harflett, C., Beale, M. H. and Ward, J. L. 2014. An efficient high throughput metabotyping platform for screening of biomass willows. Metabolites. 4 (4), pp. 946-976. https://doi.org/10.3390/metabo4040946

Assessing on-farm productivity of Miscanthus crops by combining soil mapping, yield modelling and remote sensing

A - Papers appearing in refereed journals
Richter, G. M., Agostini, F., Barker, A., Costomiris, D. and Qi, A. 2016. Assessing on-farm productivity of Miscanthus crops by combining soil mapping, yield modelling and remote sensing. Biomass & Bioenergy. 85, pp. 252-261. https://doi.org/10.1016/j.biombioe.2015.12.024

Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2

A - Papers appearing in refereed journals
Andresen, L. C., Dungait, J. A. J., Bol, R., Selsted, M. B., Ambus, P. and Michelsen, A. 2014. Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2. PLOS ONE. 9, p. e85070. https://doi.org/10.1371/journal.pone.0085070

Biomarkers of novel ecosystem development in boreal forest soils

A - Papers appearing in refereed journals
Norris, C. E., Dungait, J. A. J., Joynes, A. and Quideau, S. A. 2013. Biomarkers of novel ecosystem development in boreal forest soils. Organic Geochemistry. 64, pp. 9-18. https://doi.org/10.1016/j.orggeochem.2013.08.014

Breeding willow for short rotation coppice energy cropping

B - Book chapters etc edited externally
Shield, I. F., Macalpine, W. J., Hanley, S. J. and Karp, A. 2015. Breeding willow for short rotation coppice energy cropping. in: Cruz, V. M. V. and Dierig, D. A. (ed.) Industrial crops. Handbook of Plant Breeding 9 Springer, New York. pp. 67-80

Bringing non-energy systems and ecosystem services matrix into UK Bioenergy Value Chain Design

C1 - Edited contributions to conferences/learned societies
Shah, N., Guo, M., Richter, G. M., Holland, R., Eigenbrod, F., Taylor, G., Dodds, P., Ekins, P., Mawhood, R., Sabio, N., Slade, R. and Thornley, P. 2015. Bringing non-energy systems and ecosystem services matrix into UK Bioenergy Value Chain Design. Biomass and Energy Crops V. Aspects of Applied Biology 131 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 105-107

C-TOOL: a simple model for simulating whole-profile carbon storage in temperate agricultural soils

A - Papers appearing in refereed journals
Taghizadeh-Toosi, A., Christensen, B. T., Hutchings, N. J., Vejlin, J., Katterer, T., Glendining, M. J. and Olesen, J. E. 2014. C-TOOL: a simple model for simulating whole-profile carbon storage in temperate agricultural soils. Ecological Modelling. 292, pp. 11-25. https://doi.org/10.1016/j.ecolmodel.2014.08.016

Carbon and macronutrient losses during accelerated erosion under different tillage and residue management

A - Papers appearing in refereed journals
Beniston, J. W., Shipitalo, M. J., Lal, R., Dayton, E. A., Hopkins, D. W., Jones, F., Joynes, A. and Dungait, J. A. J. 2015. Carbon and macronutrient losses during accelerated erosion under different tillage and residue management. European Journal of Soil Science. 66 (1), pp. 218-225. https://doi.org/10.1111/ejss.12205

Carbon sequestration by perennial energy crops: is the jury still out?

A - Papers appearing in refereed journals
Agostini, F., Gregory, A. S. and Richter, G. M. 2015. Carbon sequestration by perennial energy crops: is the jury still out? BioEnergy Research. 8 (3), pp. 1057-1080. https://doi.org/10.1007/s12155-014-9571-0

Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England

A - Papers appearing in refereed journals
Collins, A. L., Williams, L. J., Zhang, Y., Marius, M., Dungait, J. A. J., Smallman, D. J., Dixon, E. R., Stringfellow, A., Sear, D. A., Jones, J. I. and Naden, P. S. 2013. Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England. Science of the Total Environment. 456-457 (1 July), pp. 181-195. https://doi.org/10.1016/j.scitotenv.2013.03.093

Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions

A - Papers appearing in refereed journals
Puttock, A., Macleod, C. J. A., Bol, R., Sessford, P., Dungait, J. A. J. and Brazier, R. E. 2013. Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes And Landforms. 38 (13), pp. 1602-1611. https://doi.org/10.1002/esp.3455

Characterisation of the willow phenylalanine ammonia-lyase (Pal) gene family reveals expression differences compared with poplar

A - Papers appearing in refereed journals
De Jong, F., Hanley, S. J., Beale, M. H. and Karp, A. 2015. Characterisation of the willow phenylalanine ammonia-lyase (Pal) gene family reveals expression differences compared with poplar. Phytochemistry. 117 (September), pp. 90-97. https://doi.org/10.1016/j.phytochem.2015.06.005

Characterization of chilling-shock responses in four genotypes of Miscanthus reveals the superior tolerance of M. x giganteus compared with M. sinensis and M. sacchariflorus

A - Papers appearing in refereed journals
Purdy, S. J., Maddison, A. L., Jones, L. E., Webster, R. J., Andralojc, P. J., Donnison, I. and Clifton-Brown, J. 2013. Characterization of chilling-shock responses in four genotypes of Miscanthus reveals the superior tolerance of M. x giganteus compared with M. sinensis and M. sacchariflorus. Annals of Botany. 111 (5), pp. 999-1013. https://doi.org/10.1093/aob/mct059

Comparative evaluation of GHG emissions from the use of Miscanthus for bio-hydrocarbon production via fast pyrolysis and bio-oil upgrading

A - Papers appearing in refereed journals
Shemfe, M. B., Whittaker, C., Gu, S. and Fidalgo, B. 2016. Comparative evaluation of GHG emissions from the use of Miscanthus for bio-hydrocarbon production via fast pyrolysis and bio-oil upgrading. Applied Energy. 176, pp. 22-33. https://doi.org/10.1016/j.apenergy.2016.04.113

Continuous weighing of a pile of poplar wood chips – A comparison of methods to determine the dry matter losses during storage

A - Papers appearing in refereed journals
Lenz, H., Pecenka, R., Idler, C., Dumfort, S., Whittaker, C., Ammon, C. and Hartung, E. 2017. Continuous weighing of a pile of poplar wood chips – A comparison of methods to determine the dry matter losses during storage. Biomass & Bioenergy. 96, pp. 119-129. https://doi.org/10.1016/j.biombioe.2016.11.011

Dedicated biomass crops can enhance biodiversity in the arable landscape

A - Papers appearing in refereed journals
Haughton, A. J., Bohan, D. A., Clark, S. J., Mallott, M. D., Mallott, V., Sage, R. and Karp, A. 2016. Dedicated biomass crops can enhance biodiversity in the arable landscape. Global Change Biology. Bioenergy. 8 (6), pp. 1071-1081. https://doi.org/10.1111/gcbb.12312

Development of a sink-source interaction model for the growth of short-rotation coppice willow and in silico exploration of genotype x environment effects

A - Papers appearing in refereed journals
Cerasuolo, M., Richter, G. M., Richard, B., Cunniff, J., Girbau, S., Shield, I. F., Purdy, S. and Karp, A. 2016. Development of a sink-source interaction model for the growth of short-rotation coppice willow and in silico exploration of genotype x environment effects. Journal of Experimental Botany. 67 (3), pp. 961-977. https://doi.org/10.1093/jxb/erv507

Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip

A - Papers appearing in refereed journals
Whittaker, C., Yates, N. E., Powers, S. J., Misselbrook, T. H. and Shield, I. F. 2016. Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip. BioEnergy Research. 9, pp. 288-302. https://doi.org/10.1007/s12155-015-9686-y

Dry matter losses and methane emissions during wood chip storage: the impact on full life cycle greenhouse gas savings of short rotation coppice willow for heat

A - Papers appearing in refereed journals
Whittaker, C., Macalpine, W. J., Yates, N. E. and Shield, I. F. 2016. Dry matter losses and methane emissions during wood chip storage: the impact on full life cycle greenhouse gas savings of short rotation coppice willow for heat. BioEnergy Research. 9 (3), pp. 820-835. https://doi.org/10.1007/s12155-016-9728-0

Effect of nitrogen fertiliser application on cell wall composition in switchgrass and reed canary grass

A - Papers appearing in refereed journals
Allison, G. G., Morris, C., Lister, S. J., Barraclough, T. J. P., Yates, N. E., Shield, I. F. and Donnison, I. S. 2012. Effect of nitrogen fertiliser application on cell wall composition in switchgrass and reed canary grass. Biomass & Bioenergy. 40, pp. 19-26. https://doi.org/10.1016/j.biombioe.2012.01.034

Efficient method for rapid multiplication of clean and healthy willow clones via in vitro propagation with broad genotype applicability

A - Papers appearing in refereed journals
Palomo-Rios, E., Macalpine, W. J., Shield, I. F., Amey, J. S., Karaoglu, C., West, J., Hanley, S. J., Krygier, R., Karp, A. and Jones, H. D. 2015. Efficient method for rapid multiplication of clean and healthy willow clones via in vitro propagation with broad genotype applicability. Canadian Journal Of Forest Research. 45 (11), pp. 1662-1667. https://doi.org/10.1139/cjfr-2015-0055

Expression of shoot-inducing Ti TL-DNA in differentiated tissues of potato (Solanum tuberosum cv Maris Bard)

A - Papers appearing in refereed journals
Burrell, M. M., Twell, D., Karp, A. and Ooms, G. 1985. Expression of shoot-inducing Ti TL-DNA in differentiated tissues of potato (Solanum tuberosum cv Maris Bard). Plant Molecular Biology. 5 (4), pp. 213-222. https://doi.org/10.1007/bf00020639

Factors affecting wood, energy grass and straw pellet durability – A review

A - Papers appearing in refereed journals
Whittaker, C. and Shield, I. F. 2017. Factors affecting wood, energy grass and straw pellet durability – A review. Renewable & Sustainable Energy Reviews. 71 (May), pp. 1-11. https://doi.org/10.1016/j.rser.2016.12.119

Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene

A - Papers appearing in refereed journals
Salmon, J., Ward, S. P., Hanley, S. J., Leyser, O. and Karp, A. 2014. Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene. Plant Biotechnology Journal. 12 (4), pp. 480-491. https://doi.org/10.1111/pbi.12154

G-fibre cell wall development in willow stems during tension wood induction

A - Papers appearing in refereed journals
Gritsch, C., Wan, Y., Mitchell, R. A. C., Shewry, P. R., Hanley, S. J. and Karp, A. 2015. G-fibre cell wall development in willow stems during tension wood induction. Journal of Experimental Botany. 66 (20), pp. 6447-6459. https://doi.org/10.1093/jxb/erv358

Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)

A - Papers appearing in refereed journals
Berlin, S., Trybush, S. O., Fogelqvist, J., Gyllenstrand, N., Hallingback, H. R., Ahman, I., Nordh, N-E., Shield, I. F., Powers, S. J., Weih, M., Lagercrantz, U., Ronnberg-Wastljung, A-C., Karp, A. and Hanley, S. J. 2014. Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae). Tree Genetics & Genomes. 10 (6), pp. 1595-1610. https://doi.org/10.1007/s11295-014-0782-5

Genetic manipulation in potato with Agrobacterium rhizogenes

A - Papers appearing in refereed journals
Ooms, G., Bossen, M. E., Burrell, M. M. and Karp, A. 1986. Genetic manipulation in potato with Agrobacterium rhizogenes. Potato research. 29 (3), pp. 367-379. https://doi.org/10.1007/bf02359965

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.)

A - Papers appearing in refereed journals
Hanley, S. J. and Karp, A. 2014. Genetic strategies for dissecting complex traits in biomass willows (Salix spp.). Tree Physiology. 34 (11), pp. 1167-1180. https://doi.org/10.1093/treephys/tpt089

Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows

B - Book chapters etc edited externally
Karp, A., Richter, G. M., Shield, I. F. and Hanley, S. J. 2014. Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows. in: McCann, M. C. (ed.) Plants and bioenergy. Advances in Plant Biology, Vol 4 Springer, New York. pp. 107-130

Grass cell wall feruloylation: distribution of bound ferulate and candidate gene expression in Brachypodium distachyon

A - Papers appearing in refereed journals
Molinari, H. B. C., Pellny, T. K., Freeman, J., Shewry, P. R. and Mitchell, R. A. C. 2013. Grass cell wall feruloylation: distribution of bound ferulate and candidate gene expression in Brachypodium distachyon. Frontiers in Plant Science. 4, p. 50 (10pp). https://doi.org/10.3389/fpls.2013.00050

Grass material as a modern process standard for C-14 analysis of n-Alkanes

A - Papers appearing in refereed journals
Cisneros-Dozal, L. M., Xu, X., Bryant, C., Pearson, E. J. and Dungait, J. A. J. 2016. Grass material as a modern process standard for C-14 analysis of n-Alkanes. Radiocarbon. 58 (3), pp. 445-458. https://doi.org/10.1017/rdc.2016.24