Cropping Carbon (CC) [ISPG]

Project (past)

Researchers
Principal InvestigatorAngela Karp
Project numberS5199
S5201
S5214
S6063
S6066
DepartmentRothamsted Research
Research fish codeBB/J004278/1[donotuse]
Grant IDBB/J004278/1

Outputs

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Investigating the relationship between unsaturated hydraulic conductivity curve and confined compression curve

A - Papers appearing in refereed journals
Bayat, H., Sedaghat, A., Sinegani, A. A. S. and Gregory, A. S. 2015. Investigating the relationship between unsaturated hydraulic conductivity curve and confined compression curve. Journal of Hydrology. 522, pp. 353-368. https://doi.org/10.1016/j.jhydrol.2014.12.050

The yield and quality response of the energy grass Miscanthus x giganteus to fertiliser applications of nitrogen, potassium and sulphur

A - Papers appearing in refereed journals
Shield, I. F., Barraclough, T. J. P., Riche, A. B. and Yates, N. E. 2014. The yield and quality response of the energy grass Miscanthus x giganteus to fertiliser applications of nitrogen, potassium and sulphur. Biomass & Bioenergy. 68, pp. 185-194. https://doi.org/10.1016/j.biombioe.2014.06.007

Opposite variations in fumarate and malate dominate metabolic phenotypes of Arabidopsis salicylate mutants with abnormal biomass under chilling

A - Papers appearing in refereed journals
Scott, I. M., Ward, J. L., Miller, S. J. and Beale, M. H. 2014. Opposite variations in fumarate and malate dominate metabolic phenotypes of Arabidopsis salicylate mutants with abnormal biomass under chilling. Physiologia Plantarum. 152 (4), pp. 660-674. https://doi.org/10.1111/ppl.12210

An efficient high throughput metabotyping platform for screening of biomass willows

A - Papers appearing in refereed journals
Corol, D. I., Harflett, C., Beale, M. H. and Ward, J. L. 2014. An efficient high throughput metabotyping platform for screening of biomass willows. Metabolites. 4 (4), pp. 946-976. https://doi.org/10.3390/metabo4040946

Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)

A - Papers appearing in refereed journals
Berlin, S., Trybush, S. O., Fogelqvist, J., Gyllenstrand, N., Hallingback, H. R., Ahman, I., Nordh, N-E., Shield, I. F., Powers, S. J., Weih, M., Lagercrantz, U., Ronnberg-Wastljung, A-C., Karp, A. and Hanley, S. J. 2014. Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae). Tree Genetics & Genomes. 10 (6), pp. 1595-1610. https://doi.org/10.1007/s11295-014-0782-5

Photosynthesis and growth in diverse willow genotypes

A - Papers appearing in refereed journals
Andralojc, P. J., Bencze, S., Madgwick, P. J., Philippe, H., Powers, S. J., Shield, I. F., Karp, A. and Parry, M. A. J. 2014. Photosynthesis and growth in diverse willow genotypes. Food and Energy Security. 3, pp. 69-85. https://doi.org/10.1002/fes3.47

C-TOOL: a simple model for simulating whole-profile carbon storage in temperate agricultural soils

A - Papers appearing in refereed journals
Taghizadeh-Toosi, A., Christensen, B. T., Hutchings, N. J., Vejlin, J., Katterer, T., Glendining, M. J. and Olesen, J. E. 2014. C-TOOL: a simple model for simulating whole-profile carbon storage in temperate agricultural soils. Ecological Modelling. 292, pp. 11-25. https://doi.org/10.1016/j.ecolmodel.2014.08.016

Nitrogen fertilization affects silicon concentration, cell wall composition and biofuel potential of wheat straw

A - Papers appearing in refereed journals
Murozuka, E., Laursen, K. H., Lindedam, J., Shield, I. F., Bruun, S., Magid, J., Moller, I. S. and Schjoerring, J. K. 2014. Nitrogen fertilization affects silicon concentration, cell wall composition and biofuel potential of wheat straw. Biomass & Bioenergy. 64, pp. 291-298. https://doi.org/10.1016/j.biombioe.2014.03.034

Temperature sensitivity of soil respiration rates enhanced by microbial community response

A - Papers appearing in refereed journals
Karhu, K., Auffret, M. D., Dungait, J. A. J., Hopkins, D. W., Prosser, J. I., Singh, B. K., Subke, J-A., Wookey, P. A., Agren, G. I., Sebastia, M-T., Gouriveau, F., Bergkvist, G., Meir, P., Nottingham, A. T., Salinas, N. and Hartley, I. P. 2014. Temperature sensitivity of soil respiration rates enhanced by microbial community response. Nature. 513, pp. 81-84. https://doi.org/10.1038/nature13604

Limited potential of no-till agriculture for climate change mitigation

A - Papers appearing in refereed journals
Powlson, D. S., Stirling, C. M., Jat, M. L., Gerard, B. G., Palm, C. A., Sanchez, P. A. and Cassman, K. G. 2014. Limited potential of no-till agriculture for climate change mitigation. Nature Climate Change. 4 (8), pp. 678-683. https://doi.org/10.1038/nclimate2292

Soil organic carbon dynamics 75 years after land-use change in perennial grassland and annual wheat agricultural systems

A - Papers appearing in refereed journals
Beniston, J. W., Dupont, S. T., Glover, J. D., Lal, R. and Dungait, J. A. J. 2014. Soil organic carbon dynamics 75 years after land-use change in perennial grassland and annual wheat agricultural systems. Biogeochemistry. 120, pp. 37-49. https://doi.org/10.1007/s10533-014-9980-3

Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2014

C2 - Non-edited contributions to conferences
Macalpine, W. J., Shield, I. F., Walsh, L. R. E., Johnston, C., Mccracken, A. R., Gilliland, J., Wilson, H., Finnan, J., Power, R., Hartmann, H., Weitz, M., White, Robin P. and Karp, A. 2014. Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2014. Proceedings 22nd European Biomass Conference and Exhibition, Setting the Course for a Biobased Economy, Hamburg, 23-26 June 2014 . pp. 116-121

Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene

A - Papers appearing in refereed journals
Salmon, J., Ward, S. P., Hanley, S. J., Leyser, O. and Karp, A. 2014. Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene. Plant Biotechnology Journal. 12 (4), pp. 480-491. https://doi.org/10.1111/pbi.12154

Primary production and links to carbon cycling in Antarctic soils

B - Book chapters etc edited externally
Hopkins, D. W., Newsham, K. K. and Dungait, J. A. J. 2014. Primary production and links to carbon cycling in Antarctic soils. in: Cowan, D. A. (ed.) Antarctic terrestrial microbiology: physical and biological properties of Antarctic soils Berlin Springer. pp. 233-248

A genome-wide metabolomic resource for tomato fruit from Solanum pennellii

A - Papers appearing in refereed journals
Perez-Fons, L., Wells, T., Corol, D. I., Ward, J. L., Gerrish, C., Beale, M. H., Seymour, G. B., Bramley, P. M. and Fraser, P. D. 2014. A genome-wide metabolomic resource for tomato fruit from Solanum pennellii. Scientific Reports. 4, p. 3859. https://doi.org/10.1038/srep03859

An assessment of subsoil organic carbon stocks in England and Wales

A - Papers appearing in refereed journals
Gregory, A. S., Kirk, G. J. D., Keay, C. A., Rawlins, B. G., Wallace, P. and Whitmore, A. P. 2014. An assessment of subsoil organic carbon stocks in England and Wales. Soil Use and Management. 30 (1), pp. 10-22. https://doi.org/10.1111/sum.12085

Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems

A - Papers appearing in refereed journals
Wan, Y., Gritsch, C., Tryfona, T., Ray, M. J., Andongabo, A. E., Hassani-Pak, K., Jones, H. D., Dupree, P., Karp, A., Shewry, P. R. and Mitchell, R. A. C. 2014. Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems. Planta. 239, pp. 1041-1053. https://doi.org/10.1007/s00425-014-2034-1

Willows as a source of renewable fuels and diverse products

B - Book chapters etc edited externally
Karp, A. 2014. Willows as a source of renewable fuels and diverse products. in: Fenning, T. (ed.) Challenges and opportunities for the world's forests in the 21st century (Forestry Sciences 81) Springer, Dordrecht. pp. 617-641

Miscanthus combustion properties and variations with Miscanthus agronomy

A - Papers appearing in refereed journals
Baxter, X. C., Darvell, L. I., Jones, J. M., Barraclough, T. J. P., Yates, N. E. and Shield, I. F. 2014. Miscanthus combustion properties and variations with Miscanthus agronomy. Fuel. 117 (Part A), pp. 851-869. https://doi.org/10.1016/j.fuel.2013.09.003

Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2

A - Papers appearing in refereed journals
Andresen, L. C., Dungait, J. A. J., Bol, R., Selsted, M. B., Ambus, P. and Michelsen, A. 2014. Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2. PLOS ONE. 9, p. e85070. https://doi.org/10.1371/journal.pone.0085070

Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows

B - Book chapters etc edited externally
Karp, A., Richter, G. M., Shield, I. F. and Hanley, S. J. 2014. Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows. in: McCann, M. C. (ed.) Plants and bioenergy. Advances in Plant Biology, Vol 4 Springer, New York. pp. 107-130

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.)

A - Papers appearing in refereed journals
Hanley, S. J. and Karp, A. 2014. Genetic strategies for dissecting complex traits in biomass willows (Salix spp.). Tree Physiology. 34 (11), pp. 1167-1180. https://doi.org/10.1093/treephys/tpt089

Insights into nitrogen allocation and recycling from nitrogen elemental analysis and 15N isotope labelling in 14 genotypes of willow

A - Papers appearing in refereed journals
Brereton, N. J. B., Pitre, F. E., Shield, I. F., Hanley, S. J., Ray, M. J., Murphy, R. J. and Karp, A. 2014. Insights into nitrogen allocation and recycling from nitrogen elemental analysis and 15N isotope labelling in 14 genotypes of willow. Tree Physiology. 34 (11), pp. 1252-1262. https://doi.org/10.1093/treephys/tpt081

Reviewing models of land availability and dynamics for biofuel crops in the United States and the European Union

A - Papers appearing in refereed journals
Li, R., Di Virgilio, N., Guan, Q., Feng, S. and Richter, G. M. 2013. Reviewing models of land availability and dynamics for biofuel crops in the United States and the European Union. Biofuels, Bioproducts and Biorefining - BIOFPR. 7 (6), pp. 666-683. https://doi.org/10.1002/bbb.1419

Biomarkers of novel ecosystem development in boreal forest soils

A - Papers appearing in refereed journals
Norris, C. E., Dungait, J. A. J., Joynes, A. and Quideau, S. A. 2013. Biomarkers of novel ecosystem development in boreal forest soils. Organic Geochemistry. 64, pp. 9-18. https://doi.org/10.1016/j.orggeochem.2013.08.014

Investigation of photosynthate-C allocation 27 days after 13C-pulse labeling of Zea mays L. at different growth stages

A - Papers appearing in refereed journals
Meng, F., Dungait, J. A. J., Zhang, X., He, M., Guo, Y. and Wu, W. 2013. Investigation of photosynthate-C allocation 27 days after 13C-pulse labeling of Zea mays L. at different growth stages. Plant and Soil. 373, pp. 755-764. https://doi.org/10.1007/s11104-013-1841-7

Modeling long-term yield trends of Miscanthus x giganteus using experimental data from across Europe

A - Papers appearing in refereed journals
Lesur, C., Jeuffroy, M-H., Makowski, D., Riche, A. B., Shield, I. F., Yates, N. E., Fritz, M., Formowitz, B., Grunert, M., Jorgensen, U., Laerke, P. E. and Loyce, C. 2013. Modeling long-term yield trends of Miscanthus x giganteus using experimental data from across Europe. Field Crops Research. 149, pp. 252-260. https://doi.org/10.1016/j.fcr.2013.05.004

The influence of harvest and storage on the properties of and fast pyrolysis products from Miscanthus giganteus

A - Papers appearing in refereed journals
Greenhalf, C. E., Nowakowski, D. J., Yates, N. E., Shield, I. F. and Bridgwater, A. V. 2013. The influence of harvest and storage on the properties of and fast pyrolysis products from Miscanthus giganteus. Biomass & Bioenergy. 56, pp. 247-259. https://doi.org/10.1016/j.biombioe.2013.05.007

Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture - insights from genomics

A - Papers appearing in refereed journals
Studholme, D. J., Harris, B., Le Cocq, K., Winsbury, R., Perera, V., Ryder, L., Ward, J. L., Beale, M. H., Thornton, C. R. and Grant, M. 2013. Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture - insights from genomics. Frontiers in Plant Science. 4, p. 258 (13pp). https://doi.org/10.3389/fpls.2013.00258

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

A - Papers appearing in refereed journals
Beste, D. J. V., Noh, K., Niedenfuhr, S., Mendum, T. A., Hawkins, N. D., Ward, J. L., Beale, M. H., Wiechert, W. and Mcfadden, J. 2013. 13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis. Chemistry and Biology. 20 (8), pp. 1012-1021. https://doi.org/10.1016/j.chembiol.2013.06.012

Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions

A - Papers appearing in refereed journals
Puttock, A., Macleod, C. J. A., Bol, R., Sessford, P., Dungait, J. A. J. and Brazier, R. E. 2013. Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes And Landforms. 38 (13), pp. 1602-1611. https://doi.org/10.1002/esp.3455

Organic farming gives no climate change benefit through soil carbon sequestration

A - Papers appearing in refereed journals
Leifeld, J., Angers, D. A., Chenu, C., Fuhrer, J., Katterer, T. and Powlson, D. S. 2013. Organic farming gives no climate change benefit through soil carbon sequestration. Proceedings of the National Academy of Sciences. 110, p. E984. https://doi.org/10.1073/pnas.1220724110

Microbial phototrophic fixation of atmospheric CO2 in China subtropical upland and paddy soils

A - Papers appearing in refereed journals
Ge, T., Wu, X., Chen, X., Yuan, H., Zou, Z., Li, B., Zhou, P., Liu, S., Tong, C., Brookes, P. C. and Wu, J. 2013. Microbial phototrophic fixation of atmospheric CO2 in China subtropical upland and paddy soils. Geochimica et Cosmochimica Acta. 113, pp. 70-78. https://doi.org/10.1016/j.gca.2013.03.020

Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England

A - Papers appearing in refereed journals
Collins, A. L., Williams, L. J., Zhang, Y., Marius, M., Dungait, J. A. J., Smallman, D. J., Dixon, E. R., Stringfellow, A., Sear, D. A., Jones, J. I. and Naden, P. S. 2013. Catchment source contributions to the sediment-bound organic matter degrading salmonid spawning gravels in a lowland river, southern England. Science of the Total Environment. 456-457 (1 July), pp. 181-195. https://doi.org/10.1016/j.scitotenv.2013.03.093

A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow

A - Papers appearing in refereed journals
Cerasuolo, M., Richter, G. M., Cunniff, J., Purdy, S., Shield, I. F. and Karp, A. 2013. A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow. Agricultural and Forest Meteorology. 173, pp. 127-138. https://doi.org/10.1016/j.agrformet.2012.11.022

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

A - Papers appearing in refereed journals
Bernillon, S., Biais, B., Deborde, C., Maucourt, M., Cabasson, C., Gibon, Y., Hansen, T. H., Husted, S., De Vos, R. C. H., Mumm, R., Jonker, H., Ward, J. L., Miller, S. J., Baker, J. M., Burger, J., Tadmor, Y., Beale, M. H., Schjoerring, J. K., Schaffer, A. A., Rolin, D., Hall, R. D. and Moing, A. 2013. Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics. 9, pp. 57-77. https://doi.org/10.1007/s11306-012-0429-1

Characterization of chilling-shock responses in four genotypes of Miscanthus reveals the superior tolerance of M. x giganteus compared with M. sinensis and M. sacchariflorus

A - Papers appearing in refereed journals
Purdy, S. J., Maddison, A. L., Jones, L. E., Webster, R. J., Andralojc, P. J., Donnison, I. and Clifton-Brown, J. 2013. Characterization of chilling-shock responses in four genotypes of Miscanthus reveals the superior tolerance of M. x giganteus compared with M. sinensis and M. sacchariflorus. Annals of Botany. 111 (5), pp. 999-1013. https://doi.org/10.1093/aob/mct059

The variable response of soil microorganisms to trace concentrations of low molecular weight organic substrates of increasing complexity

A - Papers appearing in refereed journals
Dungait, J. A. J., Kemmitt, S. J., Michallon, L., Guo, S., Wen, Q., Brookes, P. C. and Evershed, R. P. 2013. The variable response of soil microorganisms to trace concentrations of low molecular weight organic substrates of increasing complexity. Soil Biology and Biochemistry. 64, pp. 57-64. https://doi.org/10.1016/j.soilbio.2013.03.036

Grass cell wall feruloylation: distribution of bound ferulate and candidate gene expression in Brachypodium distachyon

A - Papers appearing in refereed journals
Molinari, H. B. C., Pellny, T. K., Freeman, J., Shewry, P. R. and Mitchell, R. A. C. 2013. Grass cell wall feruloylation: distribution of bound ferulate and candidate gene expression in Brachypodium distachyon. Frontiers in Plant Science. 4, p. 50 (10pp). https://doi.org/10.3389/fpls.2013.00050

Microbial biomass growth, following incorporation of biochars produced at 350 degrees C or 700 degrees C, in a silty-clay loam soil of high and low pH

A - Papers appearing in refereed journals
Luo, Y., Durenkamp, M., De Nobili, M., Lin, Q., Devonshire, B. J. and Brookes, P. C. 2013. Microbial biomass growth, following incorporation of biochars produced at 350 degrees C or 700 degrees C, in a silty-clay loam soil of high and low pH. Soil Biology and Biochemistry. 57, pp. 513-523. https://doi.org/10.1016/j.soilbio.2012.10.033