SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs
A - Papers appearing in refereed journals
Norton, G. J., Aitkenhead, M. J., Khowaja, F. S., Whalley, W. R. and Price, A. H. 2008. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Genomics. 92 (5), pp. 344-352. https://doi.org/10.1016/j.ygeno.2008.07.002
A case study: the soil ecosystem
C2 - Non-edited contributions to conferences
Hirsch, P. R. 2003. A case study: the soil ecosystem. Abstracts Royal Society Discussion Meeting on GM Crops, Modern Agriculture and the Environment, London, 11 February 2003 .
A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Devonshire, J., Ward, E. and Hirsch, P. R. 2014. A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia. Nematology. 16, pp. 1059-1067. https://doi.org/10.1163/15685411-00002830
A comparison between water uptake and root length density in winter wheat: effects of root density and rhizosphere properties
A - Papers appearing in refereed journals
Whalley, W. R., Zhang, X., Whalley, P. A., Ashton, R. W., Evans, J., Hawkesford, M. J., Griffiths, G., Huang, Z. D., Zhou, H. and Mooney, S. J. 2020. A comparison between water uptake and root length density in winter wheat: effects of root density and rhizosphere properties . Plant and Soil. 451, pp. 345-356. https://doi.org/10.1007/s11104-020-04530-3
A comparison of GPR early-time signal approaches for mapping changes in shallow soil water content
A - Papers appearing in refereed journals
Algeo, J., Slater, L., Binley, A., Van Dam, R. L. and Watts, C. W. 2018. A comparison of GPR early-time signal approaches for mapping changes in shallow soil water content. Vadose Zone Journal. 17 (1), pp. 1-11. https://doi.org/10.2136/vzj2018.01.0001
A comparison of kriging, cubic splines and classification for predicting soil properties from sample information
A - Papers appearing in refereed journals
Voltz, M. and Webster, R. 1990. A comparison of kriging, cubic splines and classification for predicting soil properties from sample information. Journal of Soil Science. 41 (3), pp. 473-490. https://doi.org/10.1111/j.1365-2389.1990.tb00080.x
A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Armenise, E., White, Robin P., Hirsch, P. R. and Goulding, K. W. T. 2013. A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts. Soil Biology and Biochemistry. 67, pp. 166-173. https://doi.org/10.1016/j.soilbio.2013.08.017
A computer program for evaluating risks in constructing choropleth maps by point sampling along transects.
A - Papers appearing in refereed journals
Burgess, T. M. and Webster, R. 1986. A computer program for evaluating risks in constructing choropleth maps by point sampling along transects. Computers & Geosciences. 12, pp. 107-127.
A dual porous model to predict the effects of soil structure on denitrification and N2O emission
C2 - Non-edited contributions to conferences
Laudone, G. M., Matthews, G. P., Bird, N. R. A., Whalley, W. R., Cardenas, L. M. and Gregory, A. S. 2012. A dual porous model to predict the effects of soil structure on denitrification and N2O emission. Abstracts 4th International Congress Eurosoil 2012, Bari, 2-6 July 2012 .
A dual-porous, biophysical void structure model of soil for the understanding of the conditions causing nitrous oxide emission
C2 - Non-edited contributions to conferences
Matthews, G. P., Laudone, G. M., Whalley, W. R., Bird, N. R. A., Gregory, A. S., Cardenas, L. M. and Misselbrook, T. H. 2010. A dual-porous, biophysical void structure model of soil for the understanding of the conditions causing nitrous oxide emission. European Geosciences Union (EGU).
A dual-porous, inverse model of water retention to study biological and hydrological interactions in soil
A - Papers appearing in refereed journals
Laudone, G. M., Matthews, G. P., Gregory, A. S., Bird, N. R. A. and Whalley, W. R. 2013. A dual-porous, inverse model of water retention to study biological and hydrological interactions in soil. European Journal of Soil Science. 64 (3), pp. 345-356. https://doi.org/10.1111/ejss.12055
A general text translation program for coded descriptions
A - Papers appearing in refereed journals
Lessells, C. M. and Webster, R. 1984. A general text translation program for coded descriptions. Computers & Geosciences. 10 (2-3), pp. 211-236. https://doi.org/10.1016/0098-3004(84)90022-0
A genomic network to monitor Earth
G - Articles in popular magazines and other technical publications
Davies, N., Field, D. and Hirsch, P. R. 2012. A genomic network to monitor Earth. Nature. 481 (7380), p. 145. https://doi.org/10.1038/481145a
A geostatistical basis for spatial weighting in multivariate classification
A - Papers appearing in refereed journals
Oliver, M. A. and Webster, R. 1989. A geostatistical basis for spatial weighting in multivariate classification. Mathematical geology. 21 (1), pp. 15-35. https://doi.org/10.1007/BF00897238
A geostatistical method for segmenting multivariate sequences of soil data.
B - Book chapters etc edited externally
Wackernagel, H., Webster, R. and Oliver, M. A. 1988. A geostatistical method for segmenting multivariate sequences of soil data. in: Classification and related methods of data analysis . Ed. H.H. Bock. Amsterdam : Elsevier/North Holland pp. 641-650
A geostatistical study of topsoil properties in zhangwu county, china
A - Papers appearing in refereed journals
Xu, J. Y. and Webster, R. 1984. A geostatistical study of topsoil properties in zhangwu county, china. Catena. 11 (1), pp. 13-26. https://doi.org/10.1016/s0341-8162(84)80002-8
A gradual rather than abrupt increase in soil strength gives better root penetration of strong layers
A - Papers appearing in refereed journals
Clark, L. J., Ferraris, S., Price, A. H. and Whalley, W. R. 2008. A gradual rather than abrupt increase in soil strength gives better root penetration of strong layers. Plant and Soil. 307, pp. 235-242. https://doi.org/10.1007/s11104-008-9602-8
A herbicide safener-induced MRP homologue from wheat
C2 - Non-edited contributions to conferences
Theodoulou, F. L., Clark, I. M., Pallett, K. E. and Hallahan, D. L. 1998. A herbicide safener-induced MRP homologue from wheat. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 77
A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution
A - Papers appearing in refereed journals
Chen, S., Liang, Z., Webster, R., Zhang, G., Zhou, Y., Teng, H., Hi, B., Arrouays, D. and Shi, Z. 2019. A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution. Science of the Total Environment. 655, pp. 273-283. https://doi.org/10.1016/j.scitotenv.2018.11.230
A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media
A - Papers appearing in refereed journals
Lia, H., Lei, H., Yang, Z., Wu, J., Zhang, X. and Li, S. 2022. A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media. Computer Methods in Applied Mechanics and Engineering. 399, p. 115451. https://doi.org/10.1016/j.cma.2022.115451
A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application
A - Papers appearing in refereed journals
Wang, F., Zhang, X., Shen, X. and Sun, J, 2018. A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application . Journal of Hydrology. 564 (564), pp. 246-255. https://doi.org/10.1016/j.jhydrol.2018.06.083
A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils
A - Papers appearing in refereed journals
Zhang, X., Crawford, J. W. and Young, I. M. 2016. A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils. Journal of Hydrology. 538, pp. 152-160. https://doi.org/10.1016/j.jhydrol.2016.04.013
A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy
A - Papers appearing in refereed journals
Breure, T., Haefele, S. M., Hannam, J. A., Corstanje, R., Webster, R., Moreno-Rojas, S. and Milne, A. E. 2022. A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy. Precision Agriculture. 23, pp. 1333 - 1353. https://doi.org/10.1007/s11119-022-09887-2
A method for release and multiple strand amplification of small quantities of DNA from endospores of the fastidious bacterium Pasteuria penetrans
A - Papers appearing in refereed journals
Mauchline, T. H., Mohan, S., Davies, K. G., Schaff, J. E., Opperman, C. H., Kerry, B. R. and Hirsch, P. R. 2010. A method for release and multiple strand amplification of small quantities of DNA from endospores of the fastidious bacterium Pasteuria penetrans. Letters in Applied Microbiology. 50 (5), pp. 515-521. https://doi.org/10.1111/j.1472-765X.2010.02830.x
A model to predict the effects of soil structure on denitrification and N2O emission
A - Papers appearing in refereed journals
Laudone, G. M., Matthews, G. P., Bird, N. R. A., Whalley, W. R., Cardenas, L. M. and Gregory, A. S. 2011. A model to predict the effects of soil structure on denitrification and N2O emission. Journal of Hydrology. 409, pp. 283-290. https://doi.org/10.1016/j.jhydrol.2011.08.026
A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials
A - Papers appearing in refereed journals
Zhang, X. X., Crawford, J. W., Flavel, R. J. and Young, I. M. 2016. A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials. Journal of Hydrology. 541 (Part B), pp. 1020-1029. https://doi.org/10.1016/j.jhydrol.2016.08.013
A multivariate method for matching soil classification systems, with an Australian example
A - Papers appearing in refereed journals
Teng, H. F., Viscarra, Rossel, R. A. and Webster, R. 2020. A multivariate method for matching soil classification systems, with an Australian example. Soil Research. 58 (6), pp. 519-527. https://doi.org/10.1071/SR19320
A nation that rebuilds its soils rebuilds itself- an engineer’s perspective
A - Papers appearing in refereed journals
Johnson, K. L., Gray, N. D., Stone, W., Kelly, B. F. J., Fitzsimons, M., Clarke, C., Blake, L., Chivasa, S., Mtambanengwe, F., Mapfumo, P., Baker, A., Beckmann, S., Dominelli, L., Neal, A. L. and Gwandu, T. 2022. A nation that rebuilds its soils rebuilds itself- an engineer’s perspective. Soil Security. 7, p. 100060. https://doi.org/10.1016/j.soisec.2022.100060
A new Rothamsted long-term field experiment for the twenty-first century - principles and practice
A - Papers appearing in refereed journals
Li, X., Storkey, J., Mead, A., Shield, I. F., Clark, I. M., Ostler, R., Roberts, B. and Dobermann, A. 2023. A new Rothamsted long-term field experiment for the twenty-first century - principles and practice. Agronomy for Sustainable Development - ASD. 43 (5), p. 60. https://doi.org/10.1007/s13593-023-00914-8
A novel approach to estimate soil penetrometer resistance from water content, bulk density, and shear wave velocity: A laboratory study on a loamy sand soil
A - Papers appearing in refereed journals
Zhang, W., Gao, W., Ren, T. and Whalley, W. R. 2020. A novel approach to estimate soil penetrometer resistance from water content, bulk density, and shear wave velocity: A laboratory study on a loamy sand soil. Geoderma. 368 (1 June), p. 114276. https://doi.org/10.1016/j.geoderma.2020.114276
A novel dielectric tensiometer enabling precision PID-based irrigation control of polytunnel-grown strawberries in coir
A - Papers appearing in refereed journals
Goodchild, M. S., Jenkins, M. D., Whalley, W. R. and Watts, C. W. 2018. A novel dielectric tensiometer enabling precision PID-based irrigation control of polytunnel-grown strawberries in coir. Biosystems Engineering. 165 (January), pp. 70-76. https://doi.org/10.1016/j.biosystemseng.2017.10.018
A novel grass hybrid to reduce flood generation in temperate regions
A - Papers appearing in refereed journals
Macleod, C. J. A., Humphreys, M. W., Whalley, W. R., Turner, L., Binley, A., Watts, C. W., Skot, L., Joynes, A., Hawkins, S., King, I. P., O'donovan, S. and Haygarth, P. M. 2013. A novel grass hybrid to reduce flood generation in temperate regions. Scientific Reports. 3, p. 1683. https://doi.org/10.1038/srep01683
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale
A - Papers appearing in refereed journals
Dennis, P. G., Miller, A. J., Clark, I. M., Taylor, R. G., Valsami-Jones, E. and Hirsch, P. R. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75, pp. 12-18. https://doi.org/10.1016/j.mimet.2008.04.013
A Novel Method to Quantify Soil Aggregate Stability by Measuring Aggregate Bond Energies
A - Papers appearing in refereed journals
Efrat, R., Rawlins, B. G., Quinton, J. N., Watts, C. W. and Whitmore, A. P. 2016. A Novel Method to Quantify Soil Aggregate Stability by Measuring Aggregate Bond Energies. Geophysical Research Abstracts. 18, pp. EGU2016-513-3.
A physical map of pPH1JI and pJB4JI
A - Papers appearing in refereed journals
Hirsch, P. R. and Beringer, J. E. 1984. A physical map of pPH1JI and pJB4JI. Plasmid. 12 (2), pp. 139-141. https://doi.org/10.1016/0147-619x(84)90059-3
A pore-scale model for simulating water flow in unsaturated soil
A - Papers appearing in refereed journals
Hu, W., Guofeng, L. and Zhang, X. 2018. A pore-scale model for simulating water flow in unsaturated soil . Microfluidics and Nanofluidics. 22 (7), p. 22:71. https://doi.org/10.1007/s10404-018-2090-0
A porous-matrix sensor to measure the matric potential of soil water in the field
A - Papers appearing in refereed journals
Whalley, W. R., Clark, L. J., Take, W. A., Bird, N. R. A., Leech, P. K., Cope, R. E. and Watts, C. W. 2007. A porous-matrix sensor to measure the matric potential of soil water in the field. European Journal of Soil Science. 58 (1), pp. 18-25. https://doi.org/10.1111/j.1365-2389.00790.x
A rapid method for release and multiple strand amplification of small quantities of DNA from Pasteuria penetrans endospores
C2 - Non-edited contributions to conferences
Mauchline, T. H., Mohan, S., Davies, K. G., Kerry, B. R. and Hirsch, P. R. 2009. A rapid method for release and multiple strand amplification of small quantities of DNA from Pasteuria penetrans endospores. Abstracts AAB Conference on Advances in Nematology, London, 15 December 2009 .
A rational strategy for determining the number of cores for bulked sampling of soil
C1 - Edited contributions to conferences/learned societies
Oliver, M. A., Frogbrook, Z., Webster, R. and Dawson, C. J. 1997. A rational strategy for determining the number of cores for bulked sampling of soil. Precision Agriculture 1997: Proceedings 1st European Conference on Precision Agriculture, Warwick, September 1997 . BIOS Scientific Publishers Limited. pp. 155-162
A re-examination of the evidence for a Plio-Pleistocene marine transgression on the Chiltern Hills. I. Structures and surfaces.
A - Papers appearing in refereed journals
Moffat, A. J., Catt, J. A., Webster, R. and Brown, E. H. 1986. A re-examination of the evidence for a Plio-Pleistocene marine transgression on the Chiltern Hills. I. Structures and surfaces. Earth Surface Processes And Landforms. 11 (1), pp. 95-106. https://doi.org/10.1002/esp.3290110110