Items where Author is "Cuzick, Alayne"

Item Type No Grouping

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics. (2025) Matentzoglu, N., Bello, S. M., Stefancsik, R., Alghamdi, S. M., Anagnostopoulos, A. V., Balhoff, J. P., Balk, M. A., Bradford, Y. M., Bridges, Y., Callahan, T. J., Caufield, H., Cuzick, Alayne, Carmody, L. C., Caron, A. R., Souza, V. D., Engel, S. R., Fey, P., Fisher, M., Gehrke, S., Grove, C., Hansen, P., Harris, N. L., Harris, M. A., Harris, L., Ibrahim, A., Jacobsen, J. O., Kohler, S., McMurry, J. A., Munoz-Fuentes, V., Munoz-Torres, M. C., Parkinson, H., Pendlington, Z. M., Pilgrim, C., Robb, S. M., Robinson, P. N., Seager, James, Segerdell, E., Smedley, D., Sollis, E., Toro, S., Vasilevsky, N., Wood, V., Haendel, M. A., Mungall, C. J., McLaughlin, J. A., Osumi-Sutherland, D.

PHI-base - The multi-species Pathogen-Host Interaction Database in 2025. (2024) Urban, Martin, Cuzick, Alayne, Seager, James, Nonavinakere, N., Sahu, J., Sahu, P., Iyer, V. L., Khamari, L., Martinez, M. C., Hammond-Kosack, Kim

A framework for community curation of interspecies interactions literature. (2023) Cuzick, Alayne, Seager, James, Wood, V., Urban, Martin, Rutherford, K., Hammond-Kosack, Kim

The Gene Ontology knowledgebase in 2023. (2023) Aleksander, S. A., Balhoff, J., Carbon, S., Cherry, J. M., Drabkin, H. J., Ebert, D., Feuermann, M., Gaudet, P., Harris, N. L., Hill, D. P., Lee, R., Mi, H., Moxon, S., Mungall, C. J., Muruganugan, A., Mushayahama, T., Sternberg, P. W., Thomas, P. D., Auken, K. V., Ramsey, J., Siegele, D. A., Chisholm, R. L., Fey, P., Aspromonte, M. C., Nugnes, M. V., Quaglia, F., Tosatto, S., Giglio, M., Nadendla, S., Antonazzo, G., Attrill, H., Santos, G. D., Marygold, S., Strelets, V., Tabone, C. J., Thurmond, J., Zhou, P., Ahmed, S. H., Asanitthong, P., Buitrago, D. L., Erdol, M. N., Gage, M. C., Kadhum, M. A., Li, K. Y. C., Long, M., Michalak, A., Pesala, A., Pritazahra, A., Saverimuttu, S. C. C., Su, R., Thurlow, K. E., Lovering, R. C., Logie, C., Oliferenko, S., Blake, J., Christie, K., Corbani, L., Dolan, M. E., Drabkin, H. J., Hill, D. P., Ni, L., Sitnikov, D., Smith, C., Cuzick, Alayne, Seager, James, Cooper, L., Elser, J., Jaiswal, P., Gupta, P., Jaiswal, P., Naithani, S., Lera-Ramirez, M., Rutherford, K., Wood, V., Pons, J. L. D., Dwinell, M. R., Hayman, G. T., Kaldunski, M. L., Kwitek, A. E., Laulederkind, S. J. F., Tutaj, M. A., Vedi, M., Wang, S., D'Eustachio, P., Aimo, L., Axelsen, K., Bridge, A., Hyka-Nouspikel, N., Morgat, A., Aleksander, S. A., Cherry, J. M., Engel, S. R., Karra, K., Miyasato, S. R., Nash, R. S., Skrzypek, M. S., Weng, S., Wong, E. D., Bakker, E., Berardini, T. Z., Reiser, L., Auchincloss, A., Axelsen, K., Argoud-Puy, G., Blatter, M., Boutet, E., Breuza, L., Bridge, A., Casals-Casas, C., Coudert, E., Estreicher, A., Famiglietti, M. L., Feuermann, M., Gos, A., Gruaz-Gumowski, N., Hulo, C., Hyka-Nouspikel, N., Jungo, F., Mercier, P. L., Lieberherr, D., Masson, P., Morgat, A., Pedruzzi, I., Pourcel, L., Poux, S., Rivoire, C., Sundaram, S., Bateman, A., Bowler-Barnett, E., Bye-A-Jee, H., Denny, P., Ignatchenko, A., Ishtiaq, R., Lock, A., Lussi, Y., Magrane, M., Martin, M. J., Orchard, S., Raposo, P., Speretta, E., Tyagi, N., Warner, K., Zaru, R., Diehl, A. D., Lee, R., Chan, J., Diamantakis, S., Raciti, D., Zarowiecki, M., Fisher, M., James-Zorn, C., Ponferrada, V., Zorn, A., Ramachandran, S., Ruzicka, L., Westerfield, M., Gene, Ontology Consortium

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. (2021) Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M, Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, Alayne, Fioretto, L. D. R., Davis, P., Silva, N. H. D., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, Kim, Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, James, Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D., Flicek, P.

PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions. (2021) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., Martinez, M. C., Pedro, H., Yates, A. D., Hammond-Kosack, Kim

PHI-base - the Pathogen–Host Interactions database. (2019) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, Keywan, Hammond-Kosack, Kim

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. (2019) Shefchek, K. A., Harris, N. L., Gargano, M., Matentzoglu, N., Unni, D., Brush, M., Keith, D., Conlin, T., Vasilevsky, N., Zhang, X. A., Balhoff, J. P., Babb, L., Bello, S. M., Blau, H., Bradford, Y., Carbon, S., Carmody, L., Chan, L. E., Cipriani, V., Cuzick, Alayne, Rocca, M. D., Dunn, N., Essaid, S., Fey, P., Grove, C., Gourdine, J., Hamosh, A., Harris, M., Helbig, I., Hoatlin, M., Joachimiak, M., Jupp, S., Lett, K. B., Lewis, S. E., McNamara, C., Pendlington, Z. M., Pilgrim, C., Putman, T., Ravanmehr, V., Reese, J., Riggs, E., Robb, S., Roncaglia, P., Seager, James, Segerdell, E., Similuk, M., Storm, A. L., Thaxon, C., Thessen, A., Jacobsen, J. O. B., McMurry, J. A., Groza, T., Köhler, S., Smedley, D., Robinson, P. N., Mungall, C. J., Haendel, M. A., Munoz-Torres, M. C., Osumi-Sutherland, D.

Ensembl Genomes 2020-enabling non-vertebrate genomic research. (2019) Cuzick, Alayne, Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, Alayne, Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, Kim, Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Wei, S., Ware, D., Williams, G., Yates, A. D., Flicek, P.

The Arabidopsis RRM domain protein EDM3 mediates race-specific disease resistance by controlling H3K9me2-dependent alternative polyadenylation of RPP7 immune receptor transcripts. (2018) Lai, Y., Cuzick, Alayne, Lu, X., Wang, J., Katiyar, N., Tsuchiya, T., Le Roch, K., McDowell, J., Holub, E., Eulgem, T. picture_as_pdf

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. (2016) Urban, Martin, Cuzick, Alayne, Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar, Hammond-Kosack, Kim

Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. (2016) Urban, Martin, Irvine, A., Cuzick, Alayne, Hammond-Kosack, Kim

PhytoPath: an integrative resource for plant pathogen genomics. (2015) Pedro, H., Maheswari, U., Urban, Martin, Irvine, A. G., Cuzick, Alayne, Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, Kim, Kersey, P. J.

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. (2015) Urban, Martin, Irvine, A. G., Cuzick, Alayne, Hammond-Kosack, Kim

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. (2009) Hammond-Kosack, Kim, Freeman, A., Desmouceaux, N., Urban, Martin, Cuzick, Alayne

Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. (2009) Cuzick, Alayne, Maguire, K., Hammond-Kosack, Kim

Molecular and genetic studies on Fusarium Ear Blight disease of wheat. (2009) Hammond-Kosack, Kim, Kanyuka, Kostya, Brown, Neil, Beacham, A. M., Cuzick, Alayne, Antoniw, John, Urban, Martin

Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. (2008) Cuzick, Alayne, Urban, Martin, Hammond-Kosack, Kim

NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. (2008) Cuzick, Alayne, Lee, S., Gezan, S., Hammond-Kosack, Kim

EDM2 is required for RPP7 -dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. (2007) Eulgem, T., Tsuchiya, T., Wang, X-J., Beasley, B., Cuzick, Alayne, Tor, M., Zhu, T., Mcdowell, J. M., Holub, E., Dangl, J. L.

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. (2007) Cuzick, Alayne, Urban, Martin, Maguire, K., Lee, S., Hammond-Kosack, Kim

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue. (2007) Hammond-Kosack, Kim, Cuzick, Alayne, Lee, S., Daudi, A., Bass, C. G., Maguire, K., Urban, Martin

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. (2006) Cuzick, Alayne, Maguire, K., Lee, S., Hammond-Kosack, Kim

The type III pseudomonal exotoxin U activates the c-Jun NH2-terminal kinase pathway and increases human epithelial interleukin-8 production. (2006) Cuzick, Alayne, Stirling, F. R., Lindsay, S. L., Evans, T. J. picture_as_pdf

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. (2005) Cuzick, Alayne, Lee, S., Urban, Martin, Hammond-Kosack, Kim

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. (2005) Cuzick, Alayne, Lee, S., Urban, Martin, Hammond-Kosack, Kim

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. (2005) Cuzick, Alayne, Lee, S., Urban, Martin, Hammond-Kosack, Kim

Segmental duplications and intragenic expansion mould the RPP7 resistance gene cluster. (2005) Cuzick, Alayne, Wang, X-J., Funderberg, N., Loux, R., Dangl, J., Holub, E., Mcdowell, J.