Number of items: 21.
Article
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks. (2016)
Balaur, I., Mazein, A., Saqi, M., Lysenko, Artem, Rawlings, Chris, Auffray, C.
Developing integrated crop knowledge networks to advance candidate gene discovery. (2016)
Hassani-Pak, Keywan, Castellote, M., Esch, M., Hindle, M. M., Lysenko, Artem, Taubert, J., Rawlings, Chris
EpiGeNet : A graph database of interdependencies between genetic and epigenetic events in colorectal cancer. (2016)
Balaur, I., Saqi, M., Barat, A., Lysenko, Artem, Mazein, A., Ruskin, H. J., Auffray, C., Rawlings, Chris
Representing and querying disease networks using graph databases. (2016)
Lysenko, Artem, Roznovat, I. A., Saqi, M., Mazein, A., Rawlings, Chris, Auffray, C.
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. (2015)
Rudd, Jason, Kanyuka, Kostya, Hassani-Pak, Keywan, Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, Artem, Saqi, M., Desai, N. M., Powers, Stephen, Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, Kim, Dietrich, R. A., Courbot, M.
A novel approach to identify genes that determine grain protein deviation in cereals. (2015)
Mosleth, E. F., Wan, Yongfang, Lysenko, Artem, Chope, G. A., Penson, S. P., Shewry, Peter, Hawkesford, Malcolm
Discovering study-specific gene regulatory networks. (2014)
Bo, V., Curtis, T., Lysenko, Artem, Saqi, M., Swift, S., Tucker, A.
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. (2014)
Graham, N. S., Hammond, J. P., Lysenko, Artem, Mayes, S., O Lochlainn, S., Blasco, B., Bowen, H. C., Rawlings, Chris, Rios, J. J., Welham, Sue, Carion, P. W. C., Dupuy, L. X., King, G. J., White, P. J., Broadley, M. R.
Interactive exploration of integrated biological datasets using context-sensitive workflows. (2014)
Horn, F., Rittweger, M., Taubert, J., Lysenko, Artem, Rawlings, Chris, Guthke, R.
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. (2013)
Lysenko, Artem, Urban, Martin, Bennett, L., Tsoka, S., Janowska-Sejda, E., Rawlings, Chris, Hammond-Kosack, Kim, Saqi, M.
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. (2011)
Defoin-Platel, M., Hindle, M. M., Lysenko, Artem, Powers, Stephen, Habash, D. Z., Rawlings, Chris, Saqi, M.
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. (2011)
Lysenko, Artem, Defoin-Platel, M., Hassani-Pak, Keywan, Taubert, J., Hodgman, C., Rawlings, Chris, Saqi, M.
Analysis and visualisation of RDF resources in Ondex. (2010)
Canevet, C., Lysenko, Artem, Splendiani, A., Pocock, M. J. O., Rawlings, Chris
Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. (2009)
Lysenko, Artem, Hindle, M. M., Taubert, J., Saqi, M., Rawlings, Chris
Graph-based sequence annotation using a data integration approach. (2008)
Pesch, R., Lysenko, Artem, Hindle, M. M., Hassani-Pak, Keywan, Thiele, R., Rawlings, Chris, Kohler, J., Taubert, J.
Book Section
A framework for mining life sciences data on the semantic web in an interactive, graph-based environment. (2014)
Lysenko, Artem, Grzebyta, J., Hindle, M. M., Rawlings, Chris, Splendiani, A.
Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum. (2012)
Bennett, L., Lysenko, Artem, Papageorgiou, L. G., Urban, Martin, Hammond-Kosack, Kim, Rawlings, Chris, Saqi, M., Tsoka, S.
picture_as_pdf
Linking life sciences data using graph-based mapping. (2009)
Taubert, J., Hindle, M. M., Lysenko, Artem, Weile, J., Kohler, J., Rawlings, Chris
picture_as_pdf
Conference or Workshop Item
Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. (2014)
Kanyuka, Kostya, Andongabo, A. E., Hassani-Pak, Keywan, Powers, Stephen, Lysenko, Artem, Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, Kim, Courbot, M., Rudd, Jason
A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. (2014)
Kanyuka, Kostya, Lysenko, Artem, Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, Keywan, Hammond-Kosack, Kim, Courbot, M., Rudd, Jason
Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes. (2013)
Urban, Martin, Antoniw, John, Martins, N., Lysenko, Artem, Grzebyta, J., Janowska-Sedja, E., Saqi, M., Hammond-Kosack, Kim
