The BioPAX community standard for pathway data sharing

Demire, E., Cary, M. P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G., D'eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martinez-Flores, I., Hu, Z., Jimenez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., Lopez-Fuentes, A. C., Mi, H., Pichler, E., Rodchenkov, I. and Splendiani, A. 2010. The BioPAX community standard for pathway data sharing. Nature Biotechnology. 28, pp. 935-942. https://doi.org/10.1038/nbt.1666

Related outputs

A framework for mining life sciences data on the semantic web in an interactive, graph-based environment

B - Book chapters etc edited externally

Lysenko, A., Grzebyta, J., Hindle, M. M., Rawlings, C. J. and Splendiani, A. 2014. A framework for mining life sciences data on the semantic web in an interactive, graph-based environment. in: Formenti, E., Wit, E. and Tagliaferri, R. (ed.) Computational intelligence methods for bioinformatics and biostatistics. Lecture Notes in Computer Science, Vol. 8452 Springer, Dordrecht. pp. 225-237

Towards linked open gene mutations data

C1 - Edited contributions to conferences/learned societies

Zappa, A., Splendiani, A. and Romano, P. 2012. Towards linked open gene mutations data. BMC. https://doi.org/10.1186/1471-2105-13-S4-S7

Gauging triple stores with actual biological data

C1 - Edited contributions to conferences/learned societies

Mironov, V., Seethappan, N., Blonde, W., Antezana, E., Splendiani, A. and Kuiper, M. 2012. Gauging triple stores with actual biological data. https://doi.org/10.1186/1471-2105-13-S1-S3

Semantic Web applications and tools for the life sciences: SWAT4LS 2010

A - Papers appearing in refereed journals

Burger, A., Paschke, A., Romano, P., Marshall, M. S. and Splendiani, A. 2012. Semantic Web applications and tools for the life sciences: SWAT4LS 2010. BMC Bioinformatics. 13 (Supplement 1), p. 2505. https://doi.org/10.1186/1471-2105-13-S1-S1

Lost in translation: data integration tools meet the Semantic Web

C1 - Edited contributions to conferences/learned societies

Splendiani, A., Rawlings, C. J., Kuo, S-C., Stevens, R. and Lord, P. 2011. Lost in translation: data integration tools meet the Semantic Web. Proceedings 1st IRAST International Conference on Data Engineering and Internet Technology (DEIT), Bali, 15-17 March 2011 . IEEE. pp. 621-625

Knowledge sharing and collaboration in translational research, and the DC-THERA Directory

A - Papers appearing in refereed journals

Splendiani, A., Gundel, M., Austyn, J. M., Cavalieri, D., Scognamiglio, C. and Brandizi, M. 2011. Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. Briefings in Bioinformatics. 12, pp. 562-575. https://doi.org/10.1093/bib/bbr051

Biomedical semantics in the semantic web

C1 - Edited contributions to conferences/learned societies

Splendiani, A., Burger, A., Paschke, A., Romano, P. and Marshall, M. S. 2011. Biomedical semantics in the semantic web. Biomed Central Ltd. https://doi.org/10.1186/2041-1480-2-S1-S1

Analysis and visualisation of RDF resources in Ondex

G - Articles in popular magazines and other technical publications

Canevet, C., Lysenko, A., Splendiani, A., Pocock, M. J. O. and Rawlings, C. J. 2010. Analysis and visualisation of RDF resources in Ondex. Nature Precedings. https://doi.org/10.1038/npre.2010.5430

Ondex: Data integration and visualisation for the Semantic Web

C2 - Non-edited contributions to conferences

Canevet, C., Splendiani, A., Kuo, S-C., Stevens, R., Lord, P. and Rawlings, C. J. 2009. Ondex: Data integration and visualisation for the Semantic Web. In: CEUR Workshop Proceedings vol. 559, CEUR-WS.org, Workshop on Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2009, Amsterdam, 1/07/2009. . CEUR-WS.org.

NETTAB 2009: 9th Annual Workshop on Network Tools and Applications in Biology: Technologies, Tools and Appliations for Collaborative and Social Bioinformatics Research and Development, Catania, 10-12 June 2009

E - Books edited/written by staff member, alone/with others

Romano, P., Giugno, R., Pulvirenti, A., Splendiani, A. and Ferro, A. 2009. NETTAB 2009: 9th Annual Workshop on Network Tools and Applications in Biology: Technologies, Tools and Appliations for Collaborative and Social Bioinformatics Research and Development, Catania, 10-12 June 2009. Liberodiscrivere, Genoa.

Semantic web applications and tools for life sciences SWAT4LS 2008 (CEUR Workshop Proceedings, Vol. 435)

E - Books edited/written by staff member, alone/with others

Burger, A., Paschke, A., Romano, P. and Splendiani, A. 2009. Semantic web applications and tools for life sciences SWAT4LS 2008 (CEUR Workshop Proceedings, Vol. 435). CEUR-WS, Aachen.

Semantic web applications and tools for life sciences, 2008 Edinburgh, UK, 28 November 2008 (BMC Bioibnformatics, Vol 10, Supplement 10)

E - Books edited/written by staff member, alone/with others

Burger, A., Romano, P., Paschke, A. and Splendiani, A. 2009. Semantic web applications and tools for life sciences, 2008 Edinburgh, UK, 28 November 2008 (BMC Bioibnformatics, Vol 10, Supplement 10).

Toward a new paradigm for user interaction on the semantic web to support life sciences investigation

C2 - Non-edited contributions to conferences

Splendiani, A., Kuiper, M. and Rawlings, C. J. 2009. Toward a new paradigm for user interaction on the semantic web to support life sciences investigation. Proceedings Workshop on Semantic Web User Interaction: Sharing Ideas for Complex Problems in User Interaction (SWUI2009), Washington DC, 25 October 2009 .

Semantic web applications and tools for life sciences, 2008 - introduction

G - Articles in popular magazines and other technical publications

Burger, A., Romano, P., Paschke, A. and Splendiani, A. 2009. Semantic web applications and tools for life sciences, 2008 - introduction. BMC Bioinformatics. 10(Suppl. 10), p. S1. https://doi.org/10.1186/1471-2105-10-S10-S1