Interactive exploration of integrated biological datasets using context-sensitive workflows

Horn, F., Rittweger, M., Taubert, J., Lysenko, A., Rawlings, C. J. and Guthke, R. 2014. Interactive exploration of integrated biological datasets using context-sensitive workflows. Frontiers in Genetics. 5, p. 21. https://doi.org/10.3389/fgene.2014.00021

Authors	Horn, F., Rittweger, M., Taubert, J., Lysenko, A., Rawlings, C. J. and Guthke, R.
Year of Publication	2014
Journal	Frontiers in Genetics
Journal citation	5, p. 21
Digital Object Identifier (DOI)	https://doi.org/10.3389/fgene.2014.00021
Open access	Published as ‘gold’ (paid) open access
Funder	Biotechnology and Biological Sciences Research Council
Funder project or code	QTLNetMiner: Mining Candidate Gene Networks From Genetic Studies of Crops and Animals
Publisher's version	Horn-2014-Interactive-exploration-of-integrat.pdf
Publisher	Frontiers Media SA
ISSN	1664-8021

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Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX

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Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E. 2008. Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX.

Graph-based sequence annotation using a data integration approach

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Pesch, R., Lysenko, A., Hindle, M. M., Hassani-Pak, K., Thiele, R., Rawlings, C. J., Kohler, J. and Taubert, J. 2008. Graph-based sequence annotation using a data integration approach. Journal of Integrative Bioinformatics. 5(2):94, p. 15pp. https://doi.org/10.2390/biecoll-jib-2008-94

PHI-base update: additions to the pathogen-host interaction database

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Winnenburg, R., Urban, M., Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, C. J., Hammond-Kosack, K. E. and Kohler, J. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Research. 36, pp. D572-D576. https://doi.org/10.1093/nar/gkm858

PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Beacham, A., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2007. PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence

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Mitchell, R. A. C., Castells-Brooke, N. I. D., Taubert, J., Verrier, P. J., Leader, D. J. and Rawlings, C. J. 2007. Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. Nucleic Acids Research. 35(Web Server issue), pp. W148-W151. https://doi.org/10.1093/nar/gkm220

The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity

A - Papers appearing in refereed journals

Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Molecular Plant-Microbe Interactions. 19 (12), pp. 1451-1462. https://doi.org/10.1094/MPMI-19-1451

Graph-based analysis and visualization of experimental results with ONDEX

A - Papers appearing in refereed journals

Koehler, J., Baumbach, J., Taubert, J., Specht, M., Skusa, A., Ruegg, A., Rawlings, C. J., Verrier, P. J. and Philippi, S. 2006. Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics. 22 (11), pp. 1383-1390. https://doi.org/10.1093/bioinformatics/btl081

PHI-base: a new database for pathogen host interactions

A - Papers appearing in refereed journals

Winnenburg, R., Baldwin, T. K., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. PHI-base: a new database for pathogen host interactions. Nucleic Acids Research. 34 (1), pp. D459-D464. https://doi.org/10.1093/nar/gkj047

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures

A - Papers appearing in refereed journals

Koehler, J., Rawlings, C. J., Verrier, P. J., Mitchell, R. A. C., Skusa, A., Ruegg, A. and Philippi, S. 2004. Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures. In Silico Biology. 5 (1), pp. 33-44.