SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Advantages of the metagenomic approach for soil exploration: reply from Vogel et al
A - Papers appearing in refereed journals
Vogel, T. M., Hirsch, P. R., Simonet, P., Jansson, J. K., Tiedje, J. M., Van Elsas, J. D., Nalin, R., Philippot, L. and Bailey, M. J. 2009. Advantages of the metagenomic approach for soil exploration: reply from Vogel et al. Nature Reviews Microbiology. 7, pp. 756-757. https://doi.org/10.1038/nrmicro2119-c3
Physical effects of soil drying on roots and crop growth
A - Papers appearing in refereed journals
Whitmore, A. P. and Whalley, W. R. 2009. Physical effects of soil drying on roots and crop growth. Journal of Experimental Botany. 60, pp. 2845-2857. https://doi.org/10.1093/jxb/erp200
The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England
A - Papers appearing in refereed journals
Gregory, A. S., Watts, C. W., Griffiths, B. S., Hallett, P. D., Kuan, H. L. and Whitmore, A. P. 2009. The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153, pp. 172-185. https://doi.org/10.1016/j.geoderma.2009.08.002
Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities
A - Papers appearing in refereed journals
Hirsch, P. R., Gilliam, L. M., Sohi, S. P., Williams, J. K., Clark, I. M. and Murray, P. J. 2009. Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities. Soil Biology and Biochemistry. 41 (9), pp. 2021-2024. https://doi.org/10.1016/j.soilbio.2009.07.011
Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia
A - Papers appearing in refereed journals
Atkins, S. D., Peteira, B., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia. Annals of Applied Biology - AAB. 155, pp. 143-152. https://doi.org/10.1111/j.1744-7348.2009.00333.x
Caracterizacion del hongo nematofago cepa IMI SD 187 de Pochonia chlamydosporia var. catenulata (Kamyscho ex Barron y Onions) Zare y Gams
C2 - Non-edited contributions to conferences
Peteira, B., Hidalgo, L., Esteves, I., Montes De Oca, N., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2009. Caracterizacion del hongo nematofago cepa IMI SD 187 de Pochonia chlamydosporia var. catenulata (Kamyscho ex Barron y Onions) Zare y Gams.
Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Atkins, S. D., Clark, I. M., Kerry, B. R. and Hirsch, P. R. 2009. Measuring abundance, diversity and parasitic ability in two populations of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia. Biocontrol Science and Technology. 19, pp. 391-406. https://doi.org/10.1080/09583150902783793
Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S., Hirsch, P. R. and Kerry, B. R. 2009. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control. Abstracts IOBC 5th Meeting on Multitrophic Interactions in Soil, Uppsala, 11-13 June 2009 . pp. 27
Arsenic uptake and speciation in the rootless duckweed Wolffia globosa
A - Papers appearing in refereed journals
Zhang, X., Zhao, F-J., Huang, Q., Williams, P. N., Sun, G-X. and Zhu, Y-G. 2009. Arsenic uptake and speciation in the rootless duckweed Wolffia globosa. New Phytologist. 182 (2), pp. 421-428. https://doi.org/10.1111/j.1469-8137.2008.02758.x
TerraGenome: a consortium for the sequencing of a soil metagenome
A - Papers appearing in refereed journals
Vogel, T. M., Simonet, P., Jansson, J. K., Hirsch, P. R., Tiedje, J. M., Van Elsas, J. D., Bailey, M. J., Nalin, R. and Philippot, L. 2009. TerraGenome: a consortium for the sequencing of a soil metagenome. Nature Reviews Microbiology. 7, p. 252. https://doi.org/10.1038/nrmicro2119
Modeling dynamic fragmentation of soil
A - Papers appearing in refereed journals
Bird, N. R. A., Watts, C. W., Tarquis, A. M. and Whitmore, A. P. 2009. Modeling dynamic fragmentation of soil. Vadose Zone Journal. 8 (1), pp. 197-201. https://doi.org/10.2136/vzj2008.0046
Estimating particle-size fractions of soil dominated by silicate minerals from geochemistry
A - Papers appearing in refereed journals
Rawlins, B. G., Webster, R., Tye, A. M., Lawley, R. and O'hara, S. L. 2009. Estimating particle-size fractions of soil dominated by silicate minerals from geochemistry. European Journal of Soil Science. 60 (1), pp. 116-126. https://doi.org/10.1111/j.1365-2389.2008.01112.x
Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2009. Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres. Letters in Applied Microbiology. 48 (1), pp. 71-76. https://doi.org/10.1111/j.1472-765X.2008.02489.x
Linking rhizoplane pH and bacterial density at the microhabitat scale
A - Papers appearing in refereed journals
Dennis, P. G., Hirsch, P. R., Smith, S. J., Taylor, R. G., Valsami-Jones, E. and Miller, A. J. 2009. Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76, pp. 101-104. https://doi.org/10.1016/j.mimet.2008.09.013
El muestreo en los estudios del suelo
E - Books edited/written by staff member, alone/with others
Webster, R. 2008. El muestreo en los estudios del suelo. Universidad Nacional Autonoma de Mexico, Coyoacan, Mexico.
Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type
C2 - Non-edited contributions to conferences
Macdonald, C., Yang, X., Clark, I. M., Hirsch, P. R. and McGrath, S. P. 2008. Long-term impacts of metal-rich sludge additions on soil microbial communities - effects of metal source and soil type. Abstracts 12th International Symposium on Microbial Ecology (ISME12): Microbial Diversity - Sustaining the Blue Planet, Cairns, 17-22 August 2008 .
Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation
A - Papers appearing in refereed journals
Wang, J., Zhang, X., Bengough, A. G. and Crawford, J. W. 2008. Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat and Fluid Flow. 18, pp. 656-672. https://doi.org/10.1108/09615530810879765
Mapping soil salinity from sample data and remote sensing in the former Lake Texcoco, Mexico
B - Book chapters etc edited externally
Fernandez Buces, N., Siebe, C., Palacio Prieto, J. L. and Webster, R. 2008. Mapping soil salinity from sample data and remote sensing in the former Lake Texcoco, Mexico. in: Metternicht, G. and Zinck, J. A. (ed.) Remote sensing of soil salinization: impact on land management CRC Press, Boca Raton, Florida. pp. 291-304
Evidence from near-isogenic lines that root penetration increases with root diameter and bending stiffness in rice
A - Papers appearing in refereed journals
Clark, L. J., Price, A. H., Steele, K. A. and Whalley, W. R. 2008. Evidence from near-isogenic lines that root penetration increases with root diameter and bending stiffness in rice. Functional Plant Biology. 35, pp. 1163-1171. https://doi.org/10.1071/FP08132
Arsenic accumulation by the aquatic fern Azolla : comparison of arsenate uptake, speciation and efflux by A. caroliniana and A. filiculoides
A - Papers appearing in refereed journals
Zhang, X., Lin, A-J., Zhao, F-J., Xu, G-Z., Duan, G-L. and Zhu, Y-G. 2008. Arsenic accumulation by the aquatic fern Azolla : comparison of arsenate uptake, speciation and efflux by A. caroliniana and A. filiculoides. Environmental Pollution. 156, pp. 1149-1155. https://doi.org/10.1016/j.envpol.2008.04.002
Soil science and geostatistics (an extended and improved translation of the text published in Russian in 'Geostatistics and soil geography', Moscow, Nauka Publ. p8-18)
B - Book chapters etc edited externally
Webster, R. 2008. Soil science and geostatistics (an extended and improved translation of the text published in Russian in 'Geostatistics and soil geography', Moscow, Nauka Publ. p8-18). in: Montanarella, L., Krasilnikov, P. and Carre, F. (ed.) Soil geography and geostatistics: concepts and applications EUR 23290 European Commission, Luxembourg. pp. 1-11
A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs
A - Papers appearing in refereed journals
Norton, G. J., Aitkenhead, M. J., Khowaja, F. S., Whalley, W. R. and Price, A. H. 2008. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Genomics. 92 (5), pp. 344-352. https://doi.org/10.1016/j.ygeno.2008.07.002
Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent
C2 - Non-edited contributions to conferences
Kerry, B. R., Clark, I. M., Esteves, I., Finetti, M., Hirsch, P. R., Gomez-Gil, L., Manzanilla-Lopez, R. H. and Rosso, L. C. 2008. Interactions on roots and the efficacy of Pochonia chlamydosporia as a biological control agent. Abstracts 6th Seminario Cientifico Internacional de Sanidad Vegetal, Habana, 22-26 September 2008 .
New approaches to an old problem: linking soil quality and microbial communities
C2 - Non-edited contributions to conferences
Hirsch, P. R. 2008. New approaches to an old problem: linking soil quality and microbial communities. Abstracts BSSS Autumn Meeting on Something Old, Something New: Integrating Molecular Biology with Other Techniques in Soil Science, Harpenden, 17 September 2008 .
Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment
C2 - Non-edited contributions to conferences
Clark, I. M. 2008. Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment. Abstracts BSSS Autumn Meeting on Something Old, Something New: Integrating Molecular Biology with Other Techniques in Soil Science, Harpenden, 17 September 2008 .
Bacterial diversity of the Broadbalk 'Classical' winter wheat experiment in relation to long-term fertilizer inputs
A - Papers appearing in refereed journals
Ogilvie, L. A., Hirsch, P. R. and Johnston, A. W. B. 2008. Bacterial diversity of the Broadbalk 'Classical' winter wheat experiment in relation to long-term fertilizer inputs. Microbial Ecology. 56, pp. 525-537. https://doi.org/10.1007/s00248-008-9372-0
Wetting of agricultural soil measured by a simplified capillary rise technique
A - Papers appearing in refereed journals
Matthews, G. P., Watts, C. W., Powlson, D. S., Price, J. C. and Whalley, W. R. 2008. Wetting of agricultural soil measured by a simplified capillary rise technique. European Journal of Soil Science. 59 (4), pp. 817-823. https://doi.org/10.1111/j.1365-2389.2008.01039.x
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale
A - Papers appearing in refereed journals
Dennis, P. G., Miller, A. J., Clark, I. M., Taylor, R. G., Valsami-Jones, E. and Hirsch, P. R. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75, pp. 12-18. https://doi.org/10.1016/j.mimet.2008.04.013
Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition
C2 - Non-edited contributions to conferences
Finetti-Sialer, M., Hirsch, P. R., Kerry, B. R. and Clark, I. M. 2008. Gene expression profiles in Pochonia chlamydosporia in conditions of saprotrophic-to-parasite transition. Abstracts 5th International Congress of Nematology, Brisbane, 13-18 July 2008 .
Ecology of Pochonia chlamydosporia in the rhizosphere
C2 - Non-edited contributions to conferences
Kerry, B. R. and Hirsch, P. R. 2008. Ecology of Pochonia chlamydosporia in the rhizosphere. Abstracts 5th International Congress of Nematology, Brisbane, 13-18 July 2008 . pp. 153
Mapping aerial metal deposition in metropolitan areas from tree bark: a case study in Sheffield, England
A - Papers appearing in refereed journals
Schelle, E., Rawlins, B. G., Lark, R. M., Webster, R., Staton, I. and Mcleod, C. W. 2008. Mapping aerial metal deposition in metropolitan areas from tree bark: a case study in Sheffield, England. Environmental Pollution. 155, pp. 164-173. https://doi.org/10.1016/j.envpol.2007.10.036
Geostatistics
B - Book chapters etc edited externally
Webster, R. 2008. Geostatistics. in: Webster, R., Ringrose-Voase, A. J., Mckenzie, N. J. and Grundy, M. J. (ed.) Guidelines for surveying soil and land resources, 2nd ed CSIRO, Melbourne, Australia. pp. 369-382
The effects of simulated rain on the erosion threshold and biogeochemical properties of intertidal sediments
A - Papers appearing in refereed journals
Tolhurst, T. J., Watts, C. W., Vardy, S., Saunders, J. E., Consalvey, M. C. and Paterson, D. M. 2008. The effects of simulated rain on the erosion threshold and biogeochemical properties of intertidal sediments. Continental Shelf Research. 28, pp. 1217-1230. https://doi.org/10.1016/j.csr.2008.01.005
What can be inferred from bacterium-nanoparticle interactions about the potential consequences of environmental exposure to nanoparticles?
A - Papers appearing in refereed journals
Neal, A. L. 2008. What can be inferred from bacterium-nanoparticle interactions about the potential consequences of environmental exposure to nanoparticles? Ecotoxicology. 17, pp. 362-371. https://doi.org/10.1007/s10646-008-0217-x
Sampling using statistical methods
B - Book chapters etc edited externally
Ryan, P. J. 2008. Sampling using statistical methods. in: Webster, R., Ringrose-Voase, A. J., Mckenzie, N. J. and Grundy, M. J. (ed.) Guidelines for surveying soil and land resources, 2nd ed CSIRO, Melbourne, Australia. pp. 319-326
Guidelines for surveying soil and land resources, 2nd ed
E - Books edited/written by staff member, alone/with others
Mckenzie, N. J., Grundy, M. J. and Webster, R. Ringrose-Voase, A. J. (ed.) 2008. Guidelines for surveying soil and land resources, 2nd ed. CSIRO, Melbourne, Australia.
Statistical analysis
B - Book chapters etc edited externally
Henderson, B. L. 2008. Statistical analysis. in: Webster, R., Ringrose-Voase, A. J., Mckenzie, N. J. and Grundy, M. J. (ed.) Guidelines for surveying soil and land resources, 2nd ed CSIRO, Melbourne, Australia. pp. 327-347
A gradual rather than abrupt increase in soil strength gives better root penetration of strong layers
A - Papers appearing in refereed journals
Clark, L. J., Ferraris, S., Price, A. H. and Whalley, W. R. 2008. A gradual rather than abrupt increase in soil strength gives better root penetration of strong layers. Plant and Soil. 307, pp. 235-242. https://doi.org/10.1007/s11104-008-9602-8
Functional resilience of soil microbial communities depends on both soil structure and microbial community composition
A - Papers appearing in refereed journals
Griffiths, B. S., Hallett, P. D., Kuan, H. L., Gregory, A. S., Watts, C. W. and Whitmore, A. P. 2008. Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology And Fertility Of Soils. 44, pp. 745-754. https://doi.org/10.1007/s00374-007-0257-z
The effect of soil strength on yield of wheat
A - Papers appearing in refereed journals
Whalley, W. R., Watts, C. W., Gregory, A. S., Mooney, S. J., Clark, L. J. and Whitmore, A. P. 2008. The effect of soil strength on yield of wheat. Plant and Soil. 306, pp. 237-247. https://doi.org/10.1007/s11104-008-9577-5