Publication

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The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. (2019) Shefchek, K. A., Harris, N. L., Gargano, M., Matentzoglu, N., Unni, D., Brush, M., Keith, D., Conlin, T., Vasilevsky, N., Zhang, X. A., Balhoff, J. P., Babb, L., Bello, S. M., Blau, H., Bradford, Y., Carbon, S., Carmody, L., Chan, L. E., Cipriani, V., Cuzick, Alayne, Rocca, M. D., Dunn, N., Essaid, S., Fey, P., Grove, C., Gourdine, J., Hamosh, A., Harris, M., Helbig, I., Hoatlin, M., Joachimiak, M., Jupp, S., Lett, K. B., Lewis, S. E., McNamara, C., Pendlington, Z. M., Pilgrim, C., Putman, T., Ravanmehr, V., Reese, J., Riggs, E., Robb, S., Roncaglia, P., Seager, James, Segerdell, E., Similuk, M., Storm, A. L., Thaxon, C., Thessen, A., Jacobsen, J. O. B., McMurry, J. A., Groza, T., Köhler, S., Smedley, D., Robinson, P. N., Mungall, C. J., Haendel, M. A., Munoz-Torres, M. C., Osumi-Sutherland, D.

Public

DPVweb: a comprehensive database of plant and fungal virus genes and genomes. (2006) Adams, Michael, Antoniw, John

Nucleotide sequences of the two high-molecular-weight glutenin genes from the D-genome of a hexaploid bread wheat, Triticum aestivum L. cv Cheyenne. (1989) Anderson, O. D., Greene, F. C., Yip, R. E., Halford, Nigel, Shewry, Peter, Malpica-Romero, J. M.

Robust counterselection and advanced λRed recombineering enable markerless chromosomal integration of large heterologous constructs. (2022) Bubnov, D. M., Yuzbashev, Tigran, Khozov, A. A., Melkina, O. E., Vybornaya, T. V., Stan, G., Sineoky, S. P.

Ensembl Genomes 2020-enabling non-vertebrate genomic research. (2019) Cuzick, Alayne, Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, Alayne, Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, Kim, Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Wei, S., Ware, D., Williams, G., Yates, A. D., Flicek, P.

The nucleotide sequence of a HMW glutenin subunit gene located on chromosome 1A of wheat (Triticum aestivum L.). (1985) Forde, J., Malpica, J-M., Halford, Nigel, Shewry, Peter, Anderson, O. D., Greene, F. C., Miflin, Benjamin J

MIBiG 2.0: a repository for biosynthetic gene clusters of known function. (2019) Kautsar, S. A., Blin, K., Shaw, S., Navarro-Muñoz, J. C., Terlouw, B. R., van der Hooft, J. J. J., van Santen, J. A., Tracanna, V., Duran, H. G. S., Andreu, V. P., Selem-Mojica, N., Alanjary, M., Robinson, S. L., Lund, George, Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T., Medema, M. H. description

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. (2017) Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, Martin, Hammond-Kosack, Kim, Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M., Yates, A.

Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. (2007) Mitchell, Rowan, Castells, Nathalie, Taubert, J., Verrier, P. J., Leader, D. J., Rawlings, Chris

PhytoPath: an integrative resource for plant pathogen genomics. (2015) Pedro, H., Maheswari, U., Urban, Martin, Irvine, A. G., Cuzick, Alayne, Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, Kim, Kersey, P. J.

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. (2022) Terlouw, B. R., Blin, K., Navarro-Munoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., Santen, J. A. V., Selem-Mojica, N., Torring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., Avitia-Domınguez, L. A., Barona-Gomez, F., Bernaldo-Aguero, J., Bielinski, V. A., Biermann, F., Booth, T. J., Bravo, V. J. C., Castelo-Branco, R., Chagas, F. O., Cruz-Morales, P., Du, C., Duncan, K. R., Gavriilidou, A., Gayrard, D., Gutierrez-Garcıa, K., Haslinger, K., Helfrich, E. J. N., Hooft, J. J. V. D., Jati, A. P., Kalkreuter, E., Kalyvas, N., Kang, K. B., Kautsar, S., Kim, W., Kunjapur, A. M., Lee, W-S., Li, Y., Lin, G., Loureiro, C., Louwen, J. J. R., Louwen, N. L., Lund, George, Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. J. U., Rego, A., Rex, D. A. B., Robinson, S., Rosas-Becerra, L. R., Roxborough, E. T., Schorn, M. A., Scobie, D. J., Sing, K. S., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. P. J. M., Waschulin, V., Williams, S. E., Winter, J. M., Witte, T. E., Yang, H. X. D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R. G., Weber, T., Medema, M. H.

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. (2016) Urban, Martin, Cuzick, Alayne, Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar, Hammond-Kosack, Kim

PHI-base - The multi-species Pathogen-Host Interaction Database in 2025. (2024) Urban, Martin, Cuzick, Alayne, Seager, James, Nonavinakere, N., Sahu, J., Sahu, P., Iyer, V. L., Khamari, L., Martinez, M. C., Hammond-Kosack, Kim

PHI-base - the Pathogen–Host Interactions database. (2019) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, Keywan, Hammond-Kosack, Kim

PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions. (2021) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., Martinez, M. C., Pedro, H., Yates, A. D., Hammond-Kosack, Kim

The Pathogen-Host Interactions database (PHI-base): additions and future developments. (2014) Urban, Martin, Pant, R., Raghunath, A., Irvine, A. G., Pedro, H., Hammond-Kosack, Kim

PHI-base: a new database for pathogen host interactions. (2006) Winnenburg, R., Baldwin, T. K., Urban, Martin, Rawlings, Chris, Koehler, J., Hammond-Kosack, Kim

PHI-base update: additions to the pathogen-host interaction database. (2008) Winnenburg, R., Urban, Martin, Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, Chris, Hammond-Kosack, Kim, Kohler, J.

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. (2021) Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M, Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, Alayne, Fioretto, L. D. R., Davis, P., Silva, N. H. D., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, Kim, Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, James, Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D., Flicek, P.

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. (2025) Zdouc, M. M., Blin, K., Louwen, N. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhuyuk, K. A., Cediel-Becerra, J. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., Rond, T. D., Pup, E. D., Duncan, K. R., Gu, W., Hanif, N., Helfrich, E. J., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, George, Mantri, S., Morgan, K. D., Owen, C., Phan, C., Philmus, B., Reitz, Z. L., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J. M., Aguilar, C., Akiyama, D. Y., Al-Salihi, S. A., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Rojo, M. Y. A., Arishi, A. A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, J. A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Aguero, J., Bettenbuhl, S. M., Bielinski, V. A., Biermann1, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcon, G., Chagas, F. O., Charria-Giron, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Donahey, M. S. C., Collemare, J., Connolly, J. A., Creamer, K. E., Crusemann, M., Cruz, A. A., Cumsille, A., Dallery, J., Damas-Ramos, L. C., Damiani, T., Kruijff, M. D., Martin, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., Gonzalez-Salazar, L. A., Grayson, N. E., Greco, C., Gomez, J. E. G., Guerra, S., Flores, S. G., Gurevich, A., Gutierrez-Garcia, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Hoing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T., Hwang, J., Lacovelli, R., Lftime, D., Lorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovacs, A. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S., Li, Y., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketela, M., Mitchell, D. A., Müller, A. V., Nguyen, G., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliya, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw1, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Torring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., Wezel, G. P. V., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N., Williams, K., Williams, S. E., Witte, T. E., Rocca, S. M. W., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., Hooft, J. J. V. D., Linington, R. G., Weber, T., Medema, M. H.

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An analysis of differential display shows a strong bias towards high copy number mRNAs. (1995) Bertioli, D. J., Schlichter, U. H. A., Adams, Michael, Burrows, P. R., Steinbiss, H-H, Antoniw, John picture_as_pdf

Nucleotide-sequence of a b1-hordein gene and the identification of possible upstream regulatory elements in endosperm storage protein genes from barley, wheat and maize. (1985) Forde, Brian, Heyworth, A., Pywell, J., Kreis, M. picture_as_pdf

Molecular-cloning and analysis of cdna sequences derived from polya+rna from barley endosperm - identification of b-hordein related clones. (1981) Forde, Brian, Kreis, M., Bahramian, M. B., Matthews, J. A., Miflin, Benjamin J, Thompson, R. D., Bartels, D., Flavell, R. B. picture_as_pdf

Efficient transformation of Agrobacterium spp. by high voltage electroporation. (1989) Shen, W-J., Foerde, B. G. picture_as_pdf

5'-flanking sequence of a glutamine synthetase gene specifying the beta subunit of the cytosolic enzyme from Phaseolus vulgaris L. (1988) Turton, J. F., Hopley, A. P., Forde, Brian picture_as_pdf