Publication

Number of items: 25.

6 January 2025

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. (2025) Zdouc, M. M., Blin, K., Louwen, N. L., Navarro, J., Loureiro, C., Bader, C. D., Bailey, C. B., Barra, L., Booth, T. J., Bozhuyuk, K. A., Cediel-Becerra, J. D., Charlop-Powers, Z., Chevrette, M. G., Chooi, Y. H., D’Agostino, P. M., Rond, T. D., Pup, E. D., Duncan, K. R., Gu, W., Hanif, N., Helfrich, E. J., Jenner, M., Katsuyama, Y., Korenskaia, A., Krug, D., Libis, V., Lund, George, Mantri, S., Morgan, K. D., Owen, C., Phan, C., Philmus, B., Reitz, Z. L., Robinson, S. L., Singh, K. S., Teufel, R., Tong, Y., Tugizimana, F., Ulanova, D., Winter, J. M., Aguilar, C., Akiyama, D. Y., Al-Salihi, S. A., Alanjary, M., Alberti, F., Aleti, G., Alharthi, S. A., Rojo, M. Y. A., Arishi, A. A., Augustijn, H. E., Avalon, N. E., Avelar-Rivas, J. A., Axt, K. K., Barbieri, H. B., Barbosa, J. C. J., Segato, L. G. B., Barrett, S. E., Baunach, M., Beemelmanns, C., Beqaj, D., Berger, T., Bernaldo-Aguero, J., Bettenbuhl, S. M., Bielinski, V. A., Biermann1, F., Borges, R. M., Borriss, R., Breitenbach, M., Bretscher, K. M., Brigham, M. W., Buedenbender, L., Bulcock, B. W., Cano-Prieto, C., Capela, J., Carrion, V. J., Carter, R. S., Castelo-Branco, R., Castro-Falcon, G., Chagas, F. O., Charria-Giron, E., Chaudhri, A. A., Chaudhry, V., Choi, H., Choi, Y., Choupannejad, R., Chromy, J., Donahey, M. S. C., Collemare, J., Connolly, J. A., Creamer, K. E., Crusemann, M., Cruz, A. A., Cumsille, A., Dallery, J., Damas-Ramos, L. C., Damiani, T., Kruijff, M. D., Martin, B. D., Sala, G. D., Dillen, J., Doering, D. T., Dommaraju, S. R., Durusu, S., Egbert, S., Ellerhorst, M., Faussurier, B., Fetter, A., Feuermann, M., Fewer, D. P., Foldi, J., Frediansyah, A., Garza, E. A., Gavriilidou, A., Gentile, A., Gerke, J., Gerstmans, H., Gomez-Escribano, J. P., Gonzalez-Salazar, L. A., Grayson, N. E., Greco, C., Gomez, J. E. G., Guerra, S., Flores, S. G., Gurevich, A., Gutierrez-Garcia, K., Hart, L., Haslinger, K., He, B., Hebra, T., Hemmann, J. L., Hindra, H., Hoing, L., Holland, D. C., Holme, J. E., Horch, T., Hrab, P., Hu, J., Huynh, T., Hwang, J., Lacovelli, R., Lftime, D., Lorio, M., Jayachandran, S., Jeong, E., Jing, J., Jung, J. J., Kakumu, Y., Kalkreuter, E., Kang, K. B., Kang, S., Kim, W., Kim, G. J., Kim, H., Kim, H. U., Klapper, M., Koetsier, R. A., Kollten, C., Kovacs, A. T., Kriukova, Y., Kubach, N., Kunjapur, A. M., Kushnareva, A. K., Kust, A., Lamber, J., Larralde, M., Larsen, N. J., Launay, A. P., Le, N., Lebeer, S., Lee, B. T., Lee, K., Lev, K. L., Li, S., Li, Y., Licona-Cassani, C., Lien, A., Liu, J., Lopez, J. A. V., Machushynets, N. V., Macias, M. I., Mahmud, T., Maleckis, M., Martinez-Martinez, A. M., Mast, Y., Maximo, M. F., McBride, C. M., McLellan, R. M., Bhatt, K. M., Melkonian, C., Merrild, A., Metsä-Ketela, M., Mitchell, D. A., Müller, A. V., Nguyen, G., Nguyen, H. T., Niedermeyer, T. H. J., O’Hare, J. H., Ossowicki, A., Ostash, B. O., Otani, H., Padva, L., Paliya, S., Pan, X., Panghal, M., Parade, D. S., Park, J., Parra, J., Rubio, M. P., Pham, H. T., Pidot, S. J., Piel, J., Pourmohsenin, B., Rakhmanov, M., Ramesh, S., Rasmussen, M. H., Rego, A., Reher, R., Rice, A. J., Rigolet, A., Romero-Otero, A., Rosas-Becerra, L. R., Rosiles, P. Y., Rutz, A., Ryu, B., Sahadeo, L., Saldanha, M., Salvi, L., Sánchez-Carvajal, E., Santos-Medellin, C., Sbaraini, N., Schoellhorn, S. M., Schumm, C., Sehnal, L., Selem, N., Shah, A. D., Shishido, T. K., Sieber, S., Silviani, V., Singh, G., Singh, H., Sokolova, N., Sonnenschein, E. C., Sosio, M., Sowa, S. T., Steffen, K., Stegmann, E., Streiff, A. B., Strüder, A., Surup, F., Svenningsen, T., Sweeney, D., Szenei, J., Tagirdzhanov, A., Tan, B., Tarnowski, M. J., Terlouw1, B. R., Rey, T., Thome, N. U., Ortega, L. R. T., Torring, T., Trindade, M., Truman, A. W., Tvilum, M., Udwary, D. W., Ulbricht, C., Vader, L., Wezel, G. P. V., Walmsley, M., Warnasinghe, R., Weddeling, H. G., Weir, A. N., Williams, K., Williams, S. E., Witte, T. E., Rocca, S. M. W., Yamada, K., Yang, D., Yang, D., Yu, J., Zhou, Z., Ziemert, N., Zimmer, L., Zimmermann, A., Zimmermann, C., Hooft, J. J. V. D., Linington, R. G., Weber, T., Medema, M. H.

26 November 2024

PHI-base - The multi-species Pathogen-Host Interaction Database in 2025. (2024) Urban, Martin, Cuzick, Alayne, Seager, James, Nonavinakere, N., Sahu, J., Sahu, P., Iyer, V. L., Khamari, L., Martinez, M. C., Hammond-Kosack, Kim

18 November 2022

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. (2022) Terlouw, B. R., Blin, K., Navarro-Munoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., Santen, J. A. V., Selem-Mojica, N., Torring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., Avitia-Domınguez, L. A., Barona-Gomez, F., Bernaldo-Aguero, J., Bielinski, V. A., Biermann, F., Booth, T. J., Bravo, V. J. C., Castelo-Branco, R., Chagas, F. O., Cruz-Morales, P., Du, C., Duncan, K. R., Gavriilidou, A., Gayrard, D., Gutierrez-Garcıa, K., Haslinger, K., Helfrich, E. J. N., Hooft, J. J. V. D., Jati, A. P., Kalkreuter, E., Kalyvas, N., Kang, K. B., Kautsar, S., Kim, W., Kunjapur, A. M., Lee, W-S., Li, Y., Lin, G., Loureiro, C., Louwen, J. J. R., Louwen, N. L., Lund, George, Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. J. U., Rego, A., Rex, D. A. B., Robinson, S., Rosas-Becerra, L. R., Roxborough, E. T., Schorn, M. A., Scobie, D. J., Sing, K. S., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. P. J. M., Waschulin, V., Williams, S. E., Winter, J. M., Witte, T. E., Yang, H. X. D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R. G., Weber, T., Medema, M. H.

3 August 2022

Robust counterselection and advanced λRed recombineering enable markerless chromosomal integration of large heterologous constructs. (2022) Bubnov, D. M., Yuzbashev, Tigran, Khozov, A. A., Melkina, O. E., Vybornaya, T. V., Stan, G., Sineoky, S. P.

13 November 2021

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. (2021) Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M, Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, Alayne, Fioretto, L. D. R., Davis, P., Silva, N. H. D., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, Kim, Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, James, Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D., Flicek, P.

12 November 2021

PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions. (2021) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., Martinez, M. C., Pedro, H., Yates, A. D., Hammond-Kosack, Kim

16 November 2019

PHI-base - the Pathogen–Host Interactions database. (2019) Urban, Martin, Cuzick, Alayne, Seager, James, Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, Keywan, Hammond-Kosack, Kim

8 November 2019

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. (2019) Shefchek, K. A., Harris, N. L., Gargano, M., Matentzoglu, N., Unni, D., Brush, M., Keith, D., Conlin, T., Vasilevsky, N., Zhang, X. A., Balhoff, J. P., Babb, L., Bello, S. M., Blau, H., Bradford, Y., Carbon, S., Carmody, L., Chan, L. E., Cipriani, V., Cuzick, Alayne, Rocca, M. D., Dunn, N., Essaid, S., Fey, P., Grove, C., Gourdine, J., Hamosh, A., Harris, M., Helbig, I., Hoatlin, M., Joachimiak, M., Jupp, S., Lett, K. B., Lewis, S. E., McNamara, C., Pendlington, Z. M., Pilgrim, C., Putman, T., Ravanmehr, V., Reese, J., Riggs, E., Robb, S., Roncaglia, P., Seager, James, Segerdell, E., Similuk, M., Storm, A. L., Thaxon, C., Thessen, A., Jacobsen, J. O. B., McMurry, J. A., Groza, T., Köhler, S., Smedley, D., Robinson, P. N., Mungall, C. J., Haendel, M. A., Munoz-Torres, M. C., Osumi-Sutherland, D.

15 October 2019

MIBiG 2.0: a repository for biosynthetic gene clusters of known function. (2019) Kautsar, S. A., Blin, K., Shaw, S., Navarro-Muñoz, J. C., Terlouw, B. R., van der Hooft, J. J. J., van Santen, J. A., Tracanna, V., Duran, H. G. S., Andreu, V. P., Selem-Mojica, N., Alanjary, M., Robinson, S. L., Lund, George, Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T., Medema, M. H.

10 October 2019

Ensembl Genomes 2020-enabling non-vertebrate genomic research. (2019) Cuzick, Alayne, Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, Alayne, Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, Kim, Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, Martin, Wei, S., Ware, D., Williams, G., Yates, A. D., Flicek, P.

30 October 2017

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. (2017) Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, Martin, Hammond-Kosack, Kim, Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M., Yates, A.

3 December 2016

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. (2016) Urban, Martin, Cuzick, Alayne, Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar, Hammond-Kosack, Kim

17 October 2015

PhytoPath: an integrative resource for plant pathogen genomics. (2015) Pedro, H., Maheswari, U., Urban, Martin, Irvine, A. G., Cuzick, Alayne, Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, Kim, Kersey, P. J.

20 November 2014

The Pathogen-Host Interactions database (PHI-base): additions and future developments. (2014) Urban, Martin, Pant, R., Raghunath, A., Irvine, A. G., Pedro, H., Hammond-Kosack, Kim

2008

PHI-base update: additions to the pathogen-host interaction database. (2008) Winnenburg, R., Urban, Martin, Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, Chris, Hammond-Kosack, Kim, Kohler, J.

2007

Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. (2007) Mitchell, Rowan, Castells, Nathalie, Taubert, J., Verrier, P. J., Leader, D. J., Rawlings, Chris

1 January 2006

PHI-base: a new database for pathogen host interactions. (2006) Winnenburg, R., Baldwin, T. K., Urban, Martin, Rawlings, Chris, Koehler, J., Hammond-Kosack, Kim

2006

DPVweb: a comprehensive database of plant and fungal virus genes and genomes. (2006) Adams, Michael, Antoniw, John

1995

An analysis of differential display shows a strong bias towards high copy number mRNAs. (1995) Bertioli, D. J., Schlichter, U. H. A., Adams, Michael, Burrows, P. R., Steinbiss, H-H, Antoniw, John

11 January 1989

Nucleotide sequences of the two high-molecular-weight glutenin genes from the D-genome of a hexaploid bread wheat, Triticum aestivum L. cv Cheyenne. (1989) Anderson, O. D., Greene, F. C., Yip, R. E., Halford, Nigel, Shewry, Peter, Malpica-Romero, J. M.

1989

Efficient transformation of Agrobacterium spp. by high voltage electroporation. (1989) Shen, W-J., Foerde, B. G.

1988

5'-flanking sequence of a glutamine synthetase gene specifying the beta subunit of the cytosolic enzyme from Phaseolus vulgaris L. (1988) Turton, J. F., Hopley, A. P., Forde, Brian

11 October 1985

The nucleotide sequence of a HMW glutenin subunit gene located on chromosome 1A of wheat (Triticum aestivum L.). (1985) Forde, J., Malpica, J-M., Halford, Nigel, Shewry, Peter, Anderson, O. D., Greene, F. C., Miflin, Benjamin J

1985

Nucleotide-sequence of a b1-hordein gene and the identification of possible upstream regulatory elements in endosperm storage protein genes from barley, wheat and maize. (1985) Forde, Brian, Heyworth, A., Pywell, J., Kreis, M.

1981

Molecular-cloning and analysis of cdna sequences derived from polya+rna from barley endosperm - identification of b-hordein related clones. (1981) Forde, Brian, Kreis, M., Bahramian, M. B., Matthews, J. A., Miflin, Benjamin J, Thompson, R. D., Bartels, D., Flavell, R. B.