Plant Physiology

Journal

TitlePlant Physiology
ISSN0032-0889
PublisherOxford University Press (OUP)
American Society of Plant Biologists (ASPB)
Web address (URL)http://www.plantphysiol.org/

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Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome

A - Papers appearing in refereed journals
Pellny, T. K., Lovegrove, A., Freeman, J., Tosi, P., Love, C. G., Knox, J. P., Shewry, P. R. and Mitchell, R. A. C. 2012. Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. Plant Physiology. 158, pp. 612-627. https://doi.org/10.1104/pp.111.189191

Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat

A - Papers appearing in refereed journals
Pearce, S., Saville, R., Vaughan, S. P., Chandler, P. M., Wilhelm, E. P., Sparks, C. A., Al-Kaff, N., Korolev, A., Boulton, M. I., Phillips, A. L., Hedden, P., Nicholson, P. and Thomas, S. G. 2011. Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat. Plant Physiology. 157, pp. 1820-1831. https://doi.org/10.1104/pp.111.183657

Targeted enhancement of glutamate-to-gamma-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner

A - Papers appearing in refereed journals
Fait, A., Nunes Nesi, A., Angelovici, R., Lehmann, M., Anh Pham, P., Song, L., Haslam, R. P., Napier, J. A., Galili, G. and Fernie, A. R. 2011. Targeted enhancement of glutamate-to-gamma-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiology. 157, pp. 1026-1042. https://doi.org/10.1104/pp.111.179986

A comparison of sulfate and selenium accumulation in relation to the expression of sulfate transporter genes in Astragalus species

A - Papers appearing in refereed journals
Cabannes, E., Buchner, P. H., Broadley, M. R. and Hawkesford, M. J. 2011. A comparison of sulfate and selenium accumulation in relation to the expression of sulfate transporter genes in Astragalus species. Plant Physiology. 157, pp. 2227-2239. https://doi.org/10.1104/pp.111.183897

Heterosis in rice seedlings: its relationship to gibberellin content and expression of gibberellin metabolism and signaling genes

A - Papers appearing in refereed journals
Ma, Q., Hedden, P. and Zhang, Q. 2011. Heterosis in rice seedlings: its relationship to gibberellin content and expression of gibberellin metabolism and signaling genes. Plant Physiology. 156, pp. 1905-1920. https://doi.org/10.1104/pp.111.178046

Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa

A - Papers appearing in refereed journals
Hammond, J. P., Mayes, S., Bowen, H. C., Graham, N. S., Hayden, R. M., Love, C. G., Spracklen, W. P., Wang, J., Welham, S. J., White, P. J., King, G. J. and Broadley, M. R. 2011. Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156, pp. 1230-1241. https://doi.org/10.1104/pp.111.175612

Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses

A - Papers appearing in refereed journals
Bourdenx, B., Bernard, A., Domergue, F., Pascal, S., Leger, A., Roby, D., Pervent, M., Vile, D., Haslam, R. P., Napier, J. A., Lessire, R. and Joubes, J. 2011. Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses. Plant Physiology. 156, pp. 29-45. https://doi.org/10.1104/pp.111.172320

Benzoxazinoid metabolites regulate innate immunity against aphids and fungi in maize

A - Papers appearing in refereed journals
Ahmad, S., Veyrat, N., Gordon-Weeks, R., Zhang, Y., Martin, J. L., Smart, L. E., Glauser, G., Erb, M., Flors, V., Frey, M. and Ton, J. 2011. Benzoxazinoid metabolites regulate innate immunity against aphids and fungi in maize. Plant Physiology. 157, pp. 317-327. https://doi.org/10.1104/pp.111.180224

Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice

A - Papers appearing in refereed journals
Wu, Z., Ren, H., McGrath, S. P., Wu, P. and Zhao, F-J. 2011. Investigating the contribution of the phosphate transport pathway to arsenic accumulation in rice. Plant Physiology. 157, pp. 498-508. https://doi.org/10.1104/pp.111.178921

Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway

A - Papers appearing in refereed journals
Delatte, T. L., Sedijani, P., Kondou, Y., Matsui, M., De Jong, G. J., Somsen, G. W., Wiese-Klinkenberg, A., Primavesi, L. F., Paul, M. J. and Schluepmann, H. 2011. Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway. Plant Physiology. 157 (1), pp. 160-174. https://doi.org/10.1104/pp.111.180422

High-resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots

A - Papers appearing in refereed journals
Moore, K. L., Schroder, M., Wu, Z., Martin, B. G. H., Hawes, C. R., McGrath, S. P., Hawkesford, M. J., Ma, J. F., Zhao, F-J. and Grovenor, C. R. M. 2011. High-resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots. Plant Physiology. 156, pp. 913-924. https://doi.org/10.1104/pp.111.173088

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat

A - Papers appearing in refereed journals
Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347

Reactivation of meristem activity and sprout growth in potato tubers require both cytokinin and gibberellin

A - Papers appearing in refereed journals
Hartmann, A., Senning, M., Hedden, P., Sonnewald, U. and Sonnewald, S. 2011. Reactivation of meristem activity and sprout growth in potato tubers require both cytokinin and gibberellin. Plant Physiology. 155, pp. 776-796. https://doi.org/10.1104/pp.110.168252

Wheat grain development is characterized by remarkable trehalose 6-phosphate accumulation pregrain filling: tissue distribution and relationship to SNF1-related protein kinase1 activity

A - Papers appearing in refereed journals
Martinez-Barajas, E., Delatte, T., Schluepmann, H., De Jong, G. J., Somsen, G. W., Nunes, C., Primavesi, L. F., Coello, P., Mitchell, R. A. C. and Paul, M. J. 2011. Wheat grain development is characterized by remarkable trehalose 6-phosphate accumulation pregrain filling: tissue distribution and relationship to SNF1-related protein kinase1 activity. Plant Physiology. 156, pp. 373-381. https://doi.org/10.1104/pp.111.174524

Arsenic speciation in phloem and xylem exudates of castor bean

A - Papers appearing in refereed journals
Ye, W-L., Wood, B. A., Stroud, J. L., Andralojc, P. J., Raab, A., McGrath, S. P., Feldmann, J. and Zhao, F-J. 2010. Arsenic speciation in phloem and xylem exudates of castor bean. Plant Physiology. 154, pp. 1505-1513. https://doi.org/10.1104/pp.110.163261

A SQUAMOSA MADS box gene involved in the regulation of anthocyanin accumulation in bilberry fruits

A - Papers appearing in refereed journals
Jaakola, L., Poole, M., Jones, M. O., Kamarainen-Karppinen, T., Koskimaki, J. J., Hohtola, A., Haggman, H., Fraser, P. D., Manning, K., King, G. J., Thomson, H. and Seymour, G. B. 2010. A SQUAMOSA MADS box gene involved in the regulation of anthocyanin accumulation in bilberry fruits. Plant Physiology. 153, pp. 1619-1629. https://doi.org/10.1104/pp.110.158279

Enhancement of plant metabolite fingerprinting by machine learning

A - Papers appearing in refereed journals
Scott, I. M., Vermeer, C. P., Liakata, M., Corol, D. I., Ward, J. L., Lin, W., Johnson, H. E., Whitehead, L., Kular, B., Baker, J. M., Walsh, S., Dave, A., Larson, T. R., Graham, I. A., Wang, T. L., King, R. D., Draper, J. and Beale, M. H. 2010. Enhancement of plant metabolite fingerprinting by machine learning. Plant Physiology. 153, pp. 1506-1520. https://doi.org/10.1104/pp.109.150524

Molecular mechanisms of selenium tolerance and hyperaccumulation in Stanleya pinnata

A - Papers appearing in refereed journals
Freeman, J. L., Tamaoki, M., Stushnoff, C., Quinn, C. F., Cappa, J. J., Devonshire, J., Fakra, S. C., Marcus, M. A., McGrath, S. P., Van Hoewyk, D. and Pilon-Smits, E. A. H. 2010. Molecular mechanisms of selenium tolerance and hyperaccumulation in Stanleya pinnata. Plant Physiology. 153, pp. 1630-1652. https://doi.org/10.1104/pp.110.156570

Influence of sulfur deficiency on the expression of specific sulfate transporters and the distribution of sulfur, selenium and molybdenum in wheat

A - Papers appearing in refereed journals
Shinmachi, F., Buchner, P. H., Stroud, J. L., Parmar, S., Zhao, F-J., McGrath, S. P. and Hawkesford, M. J. 2010. Influence of sulfur deficiency on the expression of specific sulfate transporters and the distribution of sulfur, selenium and molybdenum in wheat. Plant Physiology. 153 (1), pp. 327-336. https://doi.org/10.1104/pp.110.153759

Complexation of arsenite with phytochelatins reduces arsenite efflux and translocation from roots to shoots in Arabidopsis

A - Papers appearing in refereed journals
Liu, W-J., Wood, B. A., Raab, A., McGrath, S. P., Zhao, F-J. and Feldmann, J. 2010. Complexation of arsenite with phytochelatins reduces arsenite efflux and translocation from roots to shoots in Arabidopsis. Plant Physiology. 152, pp. 2211-2221. https://doi.org/10.1104/pp.109.150862

Down-regulation of the CSLF6 gene results in decreased (1,3;1,4)-beta-D-glucan in endosperm of wheat

A - Papers appearing in refereed journals
Nemeth, C., Freeman, J., Jones, H. D., Sparks, C. A., Pellny, T. K., Wilkinson, M. D., Dunwell, J., Andersson, A. A. M., Aman, P., Guillon, F., Saulnier, L., Mitchell, R. A. C. and Shewry, P. R. 2010. Down-regulation of the CSLF6 gene results in decreased (1,3;1,4)-beta-D-glucan in endosperm of wheat. Plant Physiology. 152, pp. 1209-1218. https://doi.org/10.1104/pp.109.151712

Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots

A - Papers appearing in refereed journals
Armengaud, P., Sulpice, R., Miller, A. J., Stitt, M., Amtmann, A. and Gibon, Y. 2009. Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiology. 150, pp. 772-785. https://doi.org/10.1104/pp.108.133629

Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase

A - Papers appearing in refereed journals
Beaudoin, F., Wu, X., Li, F., Haslam, R. P., Markham, J. E., Zheng, H., Napier, J. A. and Kunst, L. 2009. Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase. Plant Physiology. 150, pp. 1174-1191. https://doi.org/10.1104/pp.109.137497

The rice aquaporin Lsi1 mediates uptake of methylated arsenic species

A - Papers appearing in refereed journals
Li, R-Y., Ago, Y., Liu, W-J., Mitani, N., Feldmann, J., McGrath, S. P., Ma, J. F. and Zhao, F-J. 2009. The rice aquaporin Lsi1 mediates uptake of methylated arsenic species. Plant Physiology. 150, pp. 2071-2080. https://doi.org/10.1104/pp.109.140350

Inhibition of SNF1-related protein kinase1 activity and regulation of metabolic pathways by trehalose-6-phosphate

A - Papers appearing in refereed journals
Zhang, Y., Primavesi, L. F., Jhurreea, D., Andralojc, P. J., Mitchell, R. A. C., Powers, S. J., Schluepmann, H., Delatte, T., Wingler, A. and Paul, M. J. 2009. Inhibition of SNF1-related protein kinase1 activity and regulation of metabolic pathways by trehalose-6-phosphate. Plant Physiology. 149 (4), pp. 1860-1871. https://doi.org/10.1104/pp.108.133934

Functional characterization of a higher plant sphingolipid delta4-desaturase: defining the role of sphingosine and sphingosine-1-phosphate in Arabidopsis

A - Papers appearing in refereed journals
Michaelson, L. V., Zauner, S., Markham, J. E., Haslam, R. P., Desikan, R., Mugford, S., Albrecht, S., Warnecke, D., Sperling, P., Heinz, E. and Napier, J. A. 2009. Functional characterization of a higher plant sphingolipid delta4-desaturase: defining the role of sphingosine and sphingosine-1-phosphate in Arabidopsis. Plant Physiology. 149, pp. 487-498. https://doi.org/10.1104/pp.108.129411

Regulation of respiration and oxygen diffusion barrier in soybean protect symbiotic nitrogen fixation from chilling- induced inhibition and shoots from premature senescence

A - Papers appearing in refereed journals
Van Heerden, P. D. R., Kiddle, G., Pellny, T. K., Mokwala, P. W., Jordaan, A., Strauss, A. J., De Beer, M., Schluter, U., Kunert, K. J. and Foyer, C. H. 2008. Regulation of respiration and oxygen diffusion barrier in soybean protect symbiotic nitrogen fixation from chilling- induced inhibition and shoots from premature senescence. Plant Physiology. 148, pp. 316-327. https://doi.org/10.1104/pp.108.123422

Interactions between arthropod-induced aboveground and belowground defenses in plants

A - Papers appearing in refereed journals
Erb, M., Ton, J., Degenhardt, J. and Turlings, T. C. J. 2008. Interactions between arthropod-induced aboveground and belowground defenses in plants. Plant Physiology. 146, pp. 867-874. https://doi.org/10.1104/pp.107.112169

The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola

A - Papers appearing in refereed journals
Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815. https://doi.org/10.1104/pp.108.119511

Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea

A - Papers appearing in refereed journals
Broadley, M. R., Hammond, J. P., King, G. J., Astley, D., Bowen, H. C., Meacham, M. C., Mead, A., Pink, D. A. C., Teakle, G. R., Hayden, R. M., Spracklen, W. P. and White, P. J. 2008. Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146, pp. 1707-1720. https://doi.org/10.1104/pp.107.114645

Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice

A - Papers appearing in refereed journals
Cheng, L., Wang, F., Shou, H., Huang, F., Zheng, L., He, F., Li, J., Zhao, F-J., Ueno, D., Ma, J. F. and Wu, P. 2007. Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice. Plant Physiology. 145, pp. 1647-1657. https://doi.org/10.1104/pp.107.107912

Novel insights into seed fatty acid synthesis and modification pathways from genetic diversity and quantitative trait loci analysis of the Brassica C genome

A - Papers appearing in refereed journals
Barker, G. C., Larson, T. R., Graham, I. A., Lynn, J. R. and King, G. J. 2007. Novel insights into seed fatty acid synthesis and modification pathways from genetic diversity and quantitative trait loci analysis of the Brassica C genome. Plant Physiology. 144, pp. 1827-1842. https://doi.org/10.1104/pp.107.096172

The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis

A - Papers appearing in refereed journals
Footitt, S., Dietrich, D., Fait, A., Fernie, A. R., Holdsworth, M. J., Baker, A. and Theodoulou, F. L. 2007. The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis. Plant Physiology. 144 (July), pp. 1467-1480. https://doi.org/10.1104/pp.107.099903

Cloning and characterization of unusual fatty acid desaturases from Anemone leveillei: identification of an acyl-coenzyme A C20 delta5-desaturase responsible for the synthesis of sciadonic acid

A - Papers appearing in refereed journals
Sayanova, O. V., Haslam, R. P., Venegas Caleron, M. and Napier, J. A. 2007. Cloning and characterization of unusual fatty acid desaturases from Anemone leveillei: identification of an acyl-coenzyme A C20 delta5-desaturase responsible for the synthesis of sciadonic acid. Plant Physiology. 144, pp. 455-467. https://doi.org/10.1104/pp.107.098202

Characterization of lipid rafts from Medicago truncatula root plasma membranes: a proteomic study reveals the presence of a raft-associated redox system

A - Papers appearing in refereed journals
Lefebvre, B., Furt, F., Hartmann, M-A., Michaelson, L. V., Carde, J-P., Sargueil-Boiron, F., Rossignol, M., Napier, J. A., Cullimore, J., Bessoule, J-J. and Mongrand, S. 2007. Characterization of lipid rafts from Medicago truncatula root plasma membranes: a proteomic study reveals the presence of a raft-associated redox system. Plant Physiology. 144, pp. 402-418. https://doi.org/10.1104/pp.106.094102

The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism

A - Papers appearing in refereed journals
Dai, M., Zhao, Y., Ma, Q., Hu, Y., Hedden, P., Zhang, Q. and Zhou, D-X. 2007. The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiology. 144, pp. 121-133. https://doi.org/10.1104/pp.107.096586

A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan

A - Papers appearing in refereed journals
Mitchell, R. A. C., Dupree, P. and Shewry, P. R. 2007. A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan. Plant Physiology. 144 (May), pp. 43-53. https://doi.org/10.1104/pp.106.094995

Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination

A - Papers appearing in refereed journals
Carrera, E., Holman, T., Medhurst, A., Peer, W., Schmuths, H., Footitt, S., Theodoulou, F. L. and Holdsworth, M. J. 2007. Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination. Plant Physiology. 143, pp. 1669-1679. https://doi.org/10.1104/pp.107.096057

Characterization of a two-component high-affinity nitrate uptake system in Arabidopsis. Physiology and protein-protein interaction

A - Papers appearing in refereed journals
Orsel, M., Chopin, F., Leleu, O., Smith, S. J., Krapp, A., Daniel-Vedele, F. and Miller, A. J. 2006. Characterization of a two-component high-affinity nitrate uptake system in Arabidopsis. Physiology and protein-protein interaction. Plant Physiology. 142, pp. 1304-1317. https://doi.org/10.1104/pp.106.085209

Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis

A - Papers appearing in refereed journals
Frigerio, M., Alabadi, D., Perez-Gomez, J., Garcia-Carcel, L., Phillips, A. L., Hedden, P. and Blazquez, M. A. 2006. Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis. Plant Physiology. 142, pp. 553-563. https://doi.org/10.1104/pp.106.084871