DiseaseNetMiner - A novel tool for mining integrated biological networks of host and pathogen interaction

Project (past)

Project dates01 Sep 2016 to end of 30 Nov 2017
Researchers
Principal InvestigatorKeywan Hassani-Pak
Co-InvestigatorKim Hammond-Kosack
FunderBiotechnology and Biological Sciences Research Council
Project numberS5523
5523
DepartmentComputational and Systems Biology (CSYS)
Research fish codeBB/N022874/1
Grant IDBB/N022874/1

Outputs

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KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species

A - Papers appearing in refereed journals
Hassani-Pak, K., Singh, A., Brandizi, M., Hearnshaw, J., Parsons, J. D., Amberkar, S., Phillips, A. L., Doonan, J. H. and Rawlings, C. J. 2021. KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13583

KnetMaps: a BioJS component to visualize biological knowledge networks

A - Papers appearing in refereed journals
Singh, A., Rawlings, C. J. and Hassani-Pak, K. 2018. KnetMaps: a BioJS component to visualize biological knowledge networks. F1000Research. 7, p. 1651. https://doi.org/10.12688/f1000research.16605.1

Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach

A - Papers appearing in refereed journals
Brandizi, M., Singh, A., Rawlings, C. J. and Hassani-Pak, K. 2018. Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach. Journal of Integrative Bioinformatics. 15 (3), pp. 1-10. https://doi.org/10.1515/jib-2018-0023

KnetMiner - An integrated data platform for gene mining and biological knowledge discovery

F - Theses
Hassani-Pak, K. 2017. KnetMiner - An integrated data platform for gene mining and biological knowledge discovery. F - Theses Rothamsted Research Computational and Analytical Sciences