Kim Hammond-Kosack

NameKim Hammond-Kosack
Job titleDiscovery Leader
Email addresskim.hammond-kosack@rothamsted.ac.uk
DepartmentProtecting Crops and the Environment
Research clusterBCP: Wheat Pathogenomics
ORCIDhttps://orcid.org/0000-0002-9699-485X
Preferred citationHammond-Kosack, K. E.
OfficeHarpenden

Research outputs

Starship giant transposable elements cluster by host taxonomy using k-mer-based phylogenetics

Hill, R., Smith, D., Canning, G., Grey, M., Hammond-Kosack, K. E. and McMullan, M. 2025. Starship giant transposable elements cluster by host taxonomy using k-mer-based phylogenetics. G3-Genes Genomes Genetics. p. JKAF082. https://doi.org/10.1093/g3journal/jkaf082

The Fusarium graminearum Effector Protease FgTPP1 Suppresses Immune Responses and Facilitates Fusarium Head Blight Disease

Darino, M., Jaiswal, N., Darma, R., Kroll, E., Urban, M., Xiang, Y., Kim, H., Myers, A., Scofield, S., Innes, R. W., Hammond-Kosack, K. E. and Helm, M. 2025. The Fusarium graminearum Effector Protease FgTPP1 Suppresses Immune Responses and Facilitates Fusarium Head Blight Disease. Molecular Plant-Microbe Interactions. 38 (2), pp. 297-314. https://doi.org/10.1094/MPMI-08-24-0103-FI

Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces

Hammond-Kosack, K. E., Hill, R., Grey, M., Fedi, M. O., Smith, D. P., Ward, S. J., Canning, G., Irish, N., Smith, J., Mcmillan, V. E., Hammond, J., Osborne, S., Chancellor, T., Swarbreck, D., Hall, N., Palma-Guerrero, J. and McMullan, M. 2025. Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces. BMC Genomics. 26, p. 239. https://doi.org/10.1186/s12864-025-11432-0

Improved Extraction Methods to Isolate High Molecular Weight DNA From Magnaporthaceae and Other Grass Root Fungi for Long-Read Whole Genome Sequencing

Grey, M. J., Freeman, J., Rudd, J. J., Irish, N., Canning, G., Chancellor, T., Palma-Guerrero, J., Hill, R., Hall, N., Hammond-Kosack, K. E. and McMullan, M. 2025. Improved Extraction Methods to Isolate High Molecular Weight DNA From Magnaporthaceae and Other Grass Root Fungi for Long-Read Whole Genome Sequencing. Bio-protocol. 15 (6), p. e5245. https://doi.org/10.21769/BioProtoc.5245

A conserved fungal Knr4/Smi1 protein is crucial for maintaining cell wall stress tolerance and host plant pathogenesis

Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2025. A conserved fungal Knr4/Smi1 protein is crucial for maintaining cell wall stress tolerance and host plant pathogenesis. PLOS Pathogens. 21 (1), p. e1012769. https://doi.org/10.1371/journal.ppat.1012769

PHI-base - The multi-species Pathogen-Host Interaction Database in 2025

Urban, M., Cuzick, A., Seager, J., Nonavinakere, N., Sahu, J., Sahu, P., Iyer, V. L., Khamari, L., Martinez, M. C. and Hammond-Kosack, K. E. 2024. PHI-base - The multi-species Pathogen-Host Interaction Database in 2025. Nucleic Acids Research. 53 (D1), p. D826–D838. https://doi.org/10.1093/nar/gkae1084

A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease

Chancellor, T., Smith, D. P., Chen, W., Clark, S. J., Venter, E., Halsey, K., Carrera, E., Mcmillan, V. E., Canning, G., Armer, V., Hammond-Kosack, K. E. and Palma-Guerrero, J. 2024. A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease. Frontiers in Plant Science. 15, p. 1444271. https://doi.org/10.3389/fpls.2024.1444271

Navigating the Fusarium species complex: Host-range plasticity and genome variations

Armer, V., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Navigating the Fusarium species complex: Host-range plasticity and genome variations. Fungal Biology. 128 (8B), pp. 2439-2459. https://doi.org/10.1016/j.funbio.2024.07.004

The trichothecene mycotoxin deoxynivalenol facilitates cell-to-cell invasion during wheat-tissue colonization by Fusarium graminearum

Armer, V., Urban, M., Ashfield, T., Deeks, M. J. and Hammond-Kosack, K. E. 2024. The trichothecene mycotoxin deoxynivalenol facilitates cell-to-cell invasion during wheat-tissue colonization by Fusarium graminearum. Molecular Plant Pathology. 25 (6), p. e13485. https://doi.org/10.1111/mpp.13485

Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat

Srivastava, M., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat. Molecular Plant-Microbe Interactions. 37 (5 supplement), p. S1.24. https://doi.org/10.1094/MPMI-37-5-S1.1

Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes.

Hammond-Kosack, K. E., Rudd, J. J. and Kanja, C. 2024. Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes. Molecular Plant-Microbe Interactions. 37 (5 supplement), p. S1.65. https://doi.org/10.1094/MPMI-37-5-S1.1

A Fusarium graminearum trichothecene mycotoxin facilitates plasmodesmatal crossings by hyphae during wheat infection.

Armer, V., Deeks, M. J. and Hammond-Kosack, K. E. 2024. A Fusarium graminearum trichothecene mycotoxin facilitates plasmodesmatal crossings by hyphae during wheat infection. Molecular Plant-Microbe Interactions. 37 (5 supplement), p. S1.138. https://doi.org/10.1094/MPMI-37-5-S1.118

Identification and functional characterisation of a locus for target site integration in Fusarium graminearum

Darino, M., Urban, M., Kaur, N., Wood, A. K. M., Smith, D., Grimwade-Mann, M., Beacham, A. and Hammond-Kosack, K. E. 2024. Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology. 11 (2), pp. 1-21. https://doi.org/10.1186/s40694-024-00171-8

Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis

Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2024. Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis. Rothamsted Research. https://doi.org/10.23637/rothamsted.99163

Characterising the Influence of First-Year Wheat Cultivar on Pseudomonas Selection and Function in a Take-All Infected Field

Zadjali, M. A., Rabiey, M., Mcmillan, V. E., Shaw, L. J., Hammond-Kosack, K. E., Malone, J. G., Mauchline, T. H. and Jackson, R. W. 2023. Characterising the Influence of First-Year Wheat Cultivar on Pseudomonas Selection and Function in a Take-All Infected Field. Crops. 3 (3), pp. 195-208. https://doi.org/10.3390/crops3030019

A framework for community curation of interspecies interactions literature

Cuzick, A., Seager, J., Wood, V., Urban, M., Rutherford, K. and Hammond-Kosack, K. E. 2023. A framework for community curation of interspecies interactions literature. eLife. 12, p. e84658. https://doi.org/10.7554/eLife.84658

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2023. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. BMC Biology. 21, p. 24. https://doi.org/10.1186/s12915-023-01520-6

Apoplastic and vascular defences

Darino, M., Kanyuka, K. and Hammond-Kosack, K. E. 2022. Apoplastic and vascular defences. Essays in Biochemistry. 66 (5), pp. 595-605. https://doi.org/10.1042/EBC20220159

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M, Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, A., Fioretto, L. D. R., Davis, P., Silva, N. H. D., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, K. E., Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, J., Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D. and Flicek, P. 2022. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Research. 50 (D1), pp. D996-D1003. https://doi.org/10.1093/nar/gkab1007

PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions

Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., Venkatesh, S. Y., Sahu, J., Iyer, S. V., Khamari, L., De Silva, N., Martinez, M. C., Pedro, H., Yates, A. D. and Hammond-Kosack, K. E. 2021. PHI-base in 2022 a multi-species phenotype database for Pathogen–Host Interactions. Nucleic Acids Research. 50, pp. D837-D847. https://doi.org/10.1093/nar/gkab1037

WAKsing plant immunity, waning diseases

Stephens, C., Hammond-Kosack, K. E. and Kanyuka, K. 2021. WAKsing plant immunity, waning diseases. Journal of Experimental Botany. 73 (1), pp. 22-37. https://doi.org/10.1093/jxb/erab422

Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex.

Geiser, D. M., Al-Hatmi, A. M. S., Aoki, T., Arie, T., Balmas, V., Barnes, I., Bergstrom, G. C., Bhattacharyya, M. K., Blomquist, C. L., Bowden, R. L., Brankovics, B., Brown, D. W., Burgess, L. W., Bushley, K., Busman, M., Cano-Lira, J. F., Carrillo, J. D., Chang, H., Chen, C., Chen, W., Chilvers, M., Chulze, S., Coleman, J. J., Cuomo, C. A., De Beer, Z. W., De Hoog, G. S., Del Castillo-Munera, J., Del Ponte, E. M., Dieguez-Uribeondo, J., Di Pietro, A., Edel-Hermann, V., Elmer, W. H., Epstein, L., Eskalen, A., Esposto, M. C., Everts, K. L., Fernandez-Pavía, S. P., Ferreira-Da-Silva, G., Foroud, N. A., Fourie, G., Frandsen, R. J. N., Freeman, S., Freitag, M., Frenkel, O., Fuller, K. K., Gagkaeva, T., Gardiner, D. M., Glenn, A. E., Gold, S. E., Gordon, T. R., Gregory, N. F., Gryzenhout, M., Guarro, J., Gugino, B. K., Gutierrez, S., Hammond-Kosack, K. E., Harris, L. J., Homa, M., Hong, C., Hornok, L., Huang, J., Ilkit, M., Jacobs, A., Jacobs, K., Jiang, C., Del Mar Jimenez-Gasco, M., Kang, S., Kasson, M. T., Kazan, K., Kennell, J. C., Kim, H., Kistler, H. C., Kuldau, G. A., Kulik, T., Kurzai, O., Laraba, I., Laurence, M. H., Lee, T., Lee, Y., Lee, Y., Leslie, J. F., Liew, E. C. Y., Lofton, L. W., Logrieco, A. F., Lopez-Berges, M. S., Luque, A. G., Lysoe, E., Ma, L., Marra, R. E., Martin, F. N., May, S. R., McCormick, S. P., McGee, C., Meis, J. F., Migheli, Q., Nor, N. M. I. M., Monod, M., Moretti, A., Mostert, D., Mule, G., Munaut, F., Munkvold, G. P., Nicholson, P., Nucci, M., O’Donnell, K., Pasquali, M., Pfenning, L. H., Prigitano, A., Proctor, R. H., Ranque, S., Rehner, S. A., Rep, M., Rodriguez-Alvarado, G., Rose, L. J., Roth, M. G., Ruiz-Roldan, C., Saleh, A. A., Salleh, B., Sang, H., Scandiani, M. M., Scauflaire, J., Schmale, D. G. III., Short, D. P. G., Sisic, A., Smith, J. A., Smyth, C. W., Son, H., Spahr, E., Stajich, J. E., Steenkamp, E., Steinberg, C., Subramaniam, R., Suga, H., Summerell, B. A., Susca, A., Swett, C. L., Toomajian, C., Torres-Cruz, T. J., Tortorano, A. M., Urban, M., Vaillancourt, L. J., Vallad, G. E., Van Der Lee, T. A. J., Vanderpool, D., VanDiepeningen, A. D., Vaughan, M. M., Venter, E., Vermeulen, M., Verweij, P. E., Viljoen, A., Waalwijk, C., Wallace, E. C., Walther, G., Wang, J., Ward, T. J., Wickes, B. L., Wiederhold, N. P., Wingfield, M. J., Wood, A. K. M., Xu, J., Yang, X., Yli-Mattila, T., Yun, S., Zakaria, L., Zhang, H., Zhang, N., Zhang, S. X. and Zhang, X. 2021. Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani species complex. Phytopathology. 111 (7), pp. 1064-1079. https://doi.org/10.1094/PHYTO-08-20-0330-LE

Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat

Hammond-Kosack, M., King, R., Kanyuka, K. and Hammond-Kosack, K. E. 2021. Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13672

Identifying aphid resistance in the ancestral wheat Triticum monococcum under field conditions.

Simon, A. L., Caulfield, J. C., Hammond-Kosack, K. E., Field, L. M. and Aradottir, G. I. 2021. Identifying aphid resistance in the ancestral wheat Triticum monococcum under field conditions. Scientific Reports. 11, p. 13495. https://doi.org/10.1038/s41598-021-92883-9

The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection

Wood, A. K. M., Panwar, V., Grimwade-Mann, M., Ashfield, T., Hammond-Kosack, K. E. and Kanyuka, K. 2021. The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection. Journal of Experimental Botany. 72 (13), pp. 5010-5023. https://doi.org/10.1093/jxb/erab170

Take-all disease: New insights into an important wheat root pathogen

Palma-Guerrero, J., Chancellor, T., Spong, J., Canning, G., Hammond, J., McMillan, V. E. and Hammond-Kosack, K. E. 2021. Take-all disease: New insights into an important wheat root pathogen. Trends in Plant Science. 26 (8), pp. 836-848. https://doi.org/10.1016/j.tplants.2021.02.009

Proteinaceous effector discovery and characterisation in filamentous plant pathogens

Kanja, C. and Hammond-Kosack, K. E. 2020. Proteinaceous effector discovery and characterisation in filamentous plant pathogens. Molecular Plant Pathology. 21 (10), pp. 1353-1376. https://doi.org/10.1111/mpp.12980

Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum

Machado, A., Walker, C., Lee, W., Urban, M. and Hammond-Kosack, K. E. 2020. Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum . Fungal Biology. 124 (9), pp. 753-765. https://doi.org/10.1016/j.funbio.2020.05.001

Genome Sequence of Fusarium graminearum strain CML3066 isolated from a wheat spike in Southern Brazil

Wood, A. K. M., King, R., Urban, M., Nicolli, C. P., Del Ponte, E. M. and Hammond-Kosack, K. E. 2020. Genome Sequence of Fusarium graminearum strain CML3066 isolated from a wheat spike in Southern Brazil. Microbiology Resource Announcements. 9 (19), pp. e00157-20. https://doi.org/10.1128/MRA.00157-20

PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets

Janowska-Seja, E. I., Lysenko, A., Urban, M., Rawlings, C. J., Toska, S. and Hammond-Kosack, K. E. 2019. PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. Frontiers in Microbiology. 10 (2721). https://doi.org/10.3389/fmicb.2019.02721

PHI-base - the Pathogen–Host Interactions database

Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, K. and Hammond-Kosack, K. E. 2020. PHI-base - the Pathogen–Host Interactions database . Nucleic Acids Research. 48 (Database issue D1), pp. D613-D620. https://doi.org/10.1093/nar/gkz904

Ensembl Genomes 2020-enabling non-vertebrate genomic research

Cuzick, A., Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, A., Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, K. E., Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Wei, S., Ware, D., Williams, G., Yates, A. D. and Flicek, P. 2020. Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Research. 48 (D1), pp. D689-D695. https://doi.org/10.1093/nar/gkz890

sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem. Frontiers in Plant Science. 10 (892). https://doi.org/10.3389/fpls.2019.00892

Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat

Dilks, T., Halsey, K., De Vos, R., Hammond-Kosack, K. E. and Brown, N. A. 2019. Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat. PLOS Pathogens. 15 (4), p. e1007666. https://doi.org/10.1371/journal.ppat.1007666

WGIN Stakeholders' Newsletter [April 2019]

Hammond-Kosack, K. E., Riche, A. B., Mcmillan, V. E., Aradottir, G. I., Hammond-Kosack, M., Lister, C. and Griffiths, S. 2019. WGIN Stakeholders' Newsletter [April 2019]. WGIN Stakeholders' Newsletter.

Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

Saving Plants From Disease

Hammond-Kosack, K. E. 2019. Saving Plants From Disease. FuturumCareers. pp. 1-6. https://doi.org/10.33424/FUTURUM12

Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions

Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2018. Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions. bioRxiv. https://doi.org/10.1101/501650

Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat

Derbyshire, M. C., Gohari, A. M., Mehrabi, R., Kilaru, S., Steinberg, G., Ali, S., Bailey, A., Hammond-Kosack, K. E., Kema, G. H. J. and Rudd, J. J. 2018. Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat. Scientific Reports. 8 (17069). https://doi.org/10.1038/s41598-018-35223-8

The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

Hellin, P., King, R., Urban, M., Hammond-Kosack, K. E. and Legreve, A 2018. The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1). Frontiers in Microbiology. 9 (1385). https://doi.org/10.3389/fmicb.2018.01385

Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen

Mcmillan, V. E., Canning, G., Moughan, J., White, R. P., Gutteridge, R. J. and Hammond-Kosack, K. E. 2018. Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen. Scientific Reports. 8 (9550), pp. 1-13. https://doi.org/10.1038/s41598-018-25511-8

Foxtail mosaic virus: a new viral vector for protein expression in cereals

Bouton, C., King, R., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E. and Kanyuka, K. 2018. Foxtail mosaic virus: a new viral vector for protein expression in cereals. Plant Physiology. 177 (4), pp. 1352-1367. https://doi.org/10.1104/pp.17.01679

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

King, R., Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2018. Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics. 19, p. 269. https://doi.org/10.1186/s12864-018-4612-2

Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi

Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115. https://doi.org/10.1093/jxb/ery136

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x

Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb)

Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. and Bregitzer, P. P. 2018. Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb). Fungal Genetics and Biology. 115 (June), pp. 90-93. https://doi.org/10.1016/j.fgb.2018.01.002

Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome

Machado, A., King, R., Urban, M., Del Ponte, E. M., Tessmann, D. J., Kanyuka, K. and Hammond-Kosack, K. E. 2018. Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-108-10-S1.1

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808. https://doi.org/10.1093/nar/gkx1011

A review of wheat diseases – a field perspective

Figueroa, M., Hammond-Kosack, K. E. and Solomon, P. S. 2017. A review of wheat diseases – a field perspective. Molecular Plant Pathology. 19 (6), pp. 1523-1536. https://doi.org/10.1111/mpp.12618

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672

RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals

Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799. https://doi.org/10.1002/ps.4748

Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains

Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection

Brown, N. A., Evans, J., Mead, A. and Hammond-Kosack, K. E. 2017. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. Molecular Plant Pathology. 18 (9), pp. 1295-1312. https://doi.org/10.1111/mpp.12564

Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields

Kanyuka, K., Machado, A., Urban, M., Lee, W. S., Brown, N. J., King, R. A., Lau, E. Y., Sparks, C. A., Bonato, A. L. V., Tibola, C. S., Martins, N. F., Aragao, F. J., West, J., Fernandes, J. M. C. and Hammond-Kosack, K. E. 2017. Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields. 1st COST iPlanta Conferernce; "Creating the plant RNAi research network CA15223", La Sapienza - CNR Headquarter , Rome, Italy, 15-17 February 2017.

Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat

Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713

Annotation of Fusarium graminearum (PH-1) version 5.0

King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16. https://doi.org/10.1128/genomeA.01479-16

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

Urban, M., Cuzick, A., Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar and Hammond-Kosack, K. E. 2017. PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. Nucleic Acids Research. 45 (D1), pp. D604-D610. https://doi.org/10.1093/nar/gkw1089

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3). https://doi.org/10.1111/pbi.12631

First draft genome sequence of a UK strain (UK99) of Fusarium culmorum

Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16. https://doi.org/10.1128/genomeA.00771-16

The genome of the emerging barley pathogen Ramularia collo-cygni

McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584. https://doi.org/10.1186/s12864-016-2928-3

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease

Bresso, E., Leroux, V., Urban, M., Hammond-Kosack, K. E., Maigret, B. and Martins, N. F. 2016. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease. Journal Of Molecular Modeling. 22, p. 163. https://doi.org/10.1007/s00894-016-3021-1

Publishing FAIR data: an exemplar methodology utilizing PHI-base

Rodriguez-Iglesias, A., Rodriguez-Gonzales, A., Irvine, A. G., Sesma, A., Urban, M., Hammond-Kosack, K. E. and Wilkinson, M. D. 2016. Publishing FAIR data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science. 7, p. 641. https://doi.org/10.3389/fpls.2016.00641

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.

Bresso, E., Togawa, R., Hammond-Kosack, K. E., Urban, M., Maigret, B. and Martins, N. F. 2016. GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics. 17 (Suppl 18), p. 463. https://doi.org/10.1186/s12859-016-1342-9

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen

Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

Resurrecting a 750-year-old plant virus

Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.

A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley

Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680

Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes

Urban, M., Irvine, A., Cuzick, A. and Hammond-Kosack, K. E. 2016. Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. Proceedings 5th ISFHB - 2nd IWWB Symposium, 5-10, Florianopolis, Brasil.

A role for BAK1 in the Zymoseptoria tritici-wheat interaction

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

The trans-kingdom identification of negative regulators of pathogen hypervirulence

Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2016. The trans-kingdom identification of negative regulators of pathogen hypervirulence. FEMS Microbiology Reviews. 40 (1), pp. 19-40. https://doi.org/10.1093/femsre/fuv042

PhytoPath: an integrative resource for plant pathogen genomics

Pedro, H., Maheswari, U., Urban, M., Irvine, A. G., Cuzick, A., Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, K. E. and Kersey, P. J. 2016. PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Research. 44 (D1), pp. D688-D693. https://doi.org/10.1093/nar/gkv1052

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence

Urban, M., Irvine, A. G., Cuzick, A. and Hammond-Kosack, K. E. 2015. Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. Frontiers in Plant Science. 6, p. 605. https://doi.org/10.3389/fpls.2015.00605

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544. https://doi.org/10.1186/s12864-015-1756-1

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition

Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927

Secreted biomolecules in fungal plant pathogenesis

Brown, N. A. and Hammond-Kosack, K. E. 2015. Secreted biomolecules in fungal plant pathogenesis. in: Gupta, V. K., Sreenivasaprasad, S. and Mach, R. L. (ed.) Fungal biomolecules: sources, applications and recent developments John Wiley & Sons Chichester, West Sussex. pp. 263-310

Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops

Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90

Exploring the susceptibility of cereal species to Phialophora fungi

Osborne, S., Mcmillan, V. E., Whalley, W. R., Foulkes, J. and Hammond-Kosack, K. E. 2015. Exploring the susceptibility of cereal species to Phialophora fungi. Abstracts Molecular Biology of Plant Pathogens Conference (MBPP), University of West England, Bristol, 8-9 April, 2015. pp. 56

Plant fungal resistance gene. WO2017103582 (A1)

Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).

Responses to plant pathogens

Hammond-Kosack, K. E. and Jones, J. D. G. 2015. Responses to plant pathogens. in: Jones, R. L., Buchanan, B. B. and Gruissem, W. (ed.) Biochemistry and molecular biology of plants, 2nd ed John Wiley & Sons Chichester, West Sussex. pp. 984-1050

Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars

Baggs, E., Moughan, J., Mcmillan, V. E. and Hammond-Kosack, K. E. 2015. Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars. BSPP News. 78, pp. 34-35.

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota

Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038

Host to a stranger: Arabidopsis and Fusarium ear blight

Brewer, H. C. and Hammond-Kosack, K. E. 2015. Host to a stranger: Arabidopsis and Fusarium ear blight. Trends in Plant Science. 20, pp. 651-663. https://doi.org/10.1016/j.tplants.2015.06.011

An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions

Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261. https://doi.org/10.1186/s12864-015-1412-9

Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat

Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions. 28, pp. 590-604. https://doi.org/10.1094/MPMI-10-14-0346-R

In planta transient expression systems for monocots

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432

Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici

Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605. https://doi.org/10.1111/nph.13323

The Pathogen-Host Interactions database (PHI-base): additions and future developments

Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H. and Hammond-Kosack, K. E. 2015. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Research. 43, pp. D645-D655. https://doi.org/10.1093/nar/gku1165

Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species

Mcmillan, V. E., Gutteridge, R. J. and Hammond-Kosack, K. E. 2014. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biology. 14, p. 212. https://doi.org/10.1186/s12870-014-0212-8

Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum

Brewer, H. C., Hammond-Kosack, K. E. and Hawkins, N. D. 2014. Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biology. 14, p. 317. https://doi.org/10.1186/s12870-014-0317-0

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703

A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences

Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069

Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction

Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .

Rhynchosporium commune effector compliment and their role in pathogenicity on barley

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335

Rhynchosporium commune effectors identification and exploitation

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .

Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .

From Rhynchosporium commune genome sequence to barley resistance

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .

Biotechnology: plant protection

Hammond-Kosack, K. E. 2014. Biotechnology: plant protection. in: Vanalfen, N. K. (ed.) Encyclopedia of agriculture and food systems, Vol. 2 Elsevier, San Diego. pp. 134-152

The role of chitin signalling in defence against Zymoseptoria tritici in wheat

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .

WGIN Stakeholders' Newsletter [April 2014]

Hammond-Kosack, K. E., Hawkesford, M. J., Mcmillan, V. E., Hammond-Kosack, M., Shepherd, G., Griffiths, S. and Foulkes, J. 2014. WGIN Stakeholders' Newsletter [April 2014]. WGIN Stakeholders' Newsletter. April.

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .

Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions. 27 (3), pp. 236-243. https://doi.org/10.1094/MPMI-07-13-0201-R

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

Lysenko, A., Urban, M., Bennett, L., Tsoka, S., Janowska-Sejda, E., Rawlings, C. J., Hammond-Kosack, K. E. and Saqi, M. 2013. Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PLOS ONE. 8, p. e67926. https://doi.org/10.1371/journal.pone.0067926

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

Lawler, K., Hammond-Kosack, K. E., Brazma, A. and Coulson, R. M. R. 2013. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC Systems Biology. 7, p. 52. https://doi.org/10.1186/1752-0509-7-52

Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytologist. 198 (3), pp. 821-835. https://doi.org/10.1111/nph.12193

New developments in identification and quantification of airborne inoculum

West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.

Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79

BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2013. Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola. Abstracts 5th Congress of European Microbiologists (FEMS), Leipzig, 21-25 July 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

Avrova, A., Berepiki, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection

Kanyuka, K., Lee, W-S., Hammond-Kosack, K. E. and Rudd, J. J. 2013. Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection. Abstracts 12th International Wheat Genetics Symposium (IWGS), Yokohama, 8-14 September 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts 1st Annual Meeting COST Action FA 1208 Pathogen-informed Strategies for Sustainable Broad-Spectrum Crop Resistance, Birnam, 9-11 October 2013 .

Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.

Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .

BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .

Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue

Urban, M. and Hammond-Kosack, K. E. 2013. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. in: Brown, D. W. and Proctor, R. H. (ed.) Fusarium: genomics, molecular and cellular biology Caister Academic Press, Norwich, Norfolk. pp. 43-79

Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes

Urban, M., Antoniw, J. F., Martins, N., Lysenko, A., Grzebyta, J., Janowska-Sedja, E., Saqi, M. and Hammond-Kosack, K. E. 2013. Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 177

Exploring the metabolome of cereal infecting fusaria

Hammond-Kosack, K. E., Lowe, R. G. T., Canning, G., Urban, M., Beale, M. H. and Ward, J. L. 2013. Exploring the metabolome of cereal infecting fusaria. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 21

Characterisation of stuA homologue in Fusarium culmorum

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hammond-Kosack, K. E., Hoffmann, L., Beyer, M. and Migheli, Q. 2013. Characterisation of stuA homologue in Fusarium culmorum. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 185

FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner

Pasquali, M., Spanu, F., Scherm, B., Balmas, V., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2013. FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner. PLOS ONE. 8, p. e57429 (14pp). https://doi.org/10.1371/journal.pone.0057429

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use

Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., Freeman, S., Gagkaeva, T., Glenn, A. E., Gordon, T. R., Gregory, N. F. and Hammond-Kosack, K. E. 2013. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. 103 (5), pp. 400-408. https://doi.org/10.1094/PHYTO-07-12-0150-LE

Exploitation of genomics in fungicide research: current status and future perspectives

Cools, H. J. and Hammond-Kosack, K. E. 2013. Exploitation of genomics in fungicide research: current status and future perspectives. Molecular Plant Pathology. 14 (2), pp. 197-210. https://doi.org/10.1111/mpp.12001

Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2012. Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group. Nature Reviews Drug Discovery. 10, p. 661. https://doi.org/10.1038/nrd3503-c2

Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum

Bennett, L., Lysenko, A., Papageorgiou, L. G., Urban, M., Hammond-Kosack, K. E., Rawlings, C. J., Saqi, M. and Tsoka, S. 2012. Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum. in: Gilbert, D. and Heiner, M. (ed.) Computational Methods in Systems Biology Springer-Verlag Berlin Heidelberg.

Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species

Lucas, J. A., Amaral, A., Hammond-Kosack, K. E. and Rudd, J. J. 2012. Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species. Abstracts 4th Brazilian Congress of Biotechnology, Guaruja, 28 October - 1 November 2012 . pp. 30

Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2012. Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 98

Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum

Martins, N. F. and Hammond-Kosack, K. E. 2012. Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum. Abstracts 1st Meeting EMBRAPA Researchers and Engineers in Europe, Montpellier, 18 October 2012 .

Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2012. Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein. Plant Physiology. 160, pp. 582-590. https://doi.org/10.1104/pp.112.203489

Phytopath - A new bioinformatics resource for plant pathogens

Pedro, H., Grzebyta, J., Urban, M., Saqi, M., Kerhornou, A., Maheswari, U., Kersey, P. and Hammond-Kosack, K. E. 2012. Phytopath - A new bioinformatics resource for plant pathogens. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 138

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp). https://doi.org/10.1371/journal.pone.0049904

A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola. Abstracts IS-MPMI 2012 15th International Congress, Kyoto, 29 July - 2 August 2012 . pp. 104

Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola

Lee, W-S., Marshall, R., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2012. Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola. Abstracts Plant Biology Congress, Freiburg, 29 July-3 August 2012 . pp. 709

Phytopath: new pathogen resource launched

Kersey, P., Pedro, H., Maheswari, U., Hammond-Kosack, K. E., Urban, M., Saqi, M. and Grzebyta, J. 2012. Phytopath: new pathogen resource launched. GARNish Newsletter. 17, p. 8.

The role of chitin signalling in the wheat - M. graminicola interaction

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Rank Prize Funds Mini-Symposium on New Horizons in Plant-Pathogen Interactions, Grasmere, 30 April-3 May 2012 .

Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes

Oliver, R. P., Williams, A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes. Abstracts Dothideomycetes Satellite Meeting, Marburg, 3 April 2012 .

The role of chitin signalling in the wheat - M. graminicola interaction

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Molecular Biology of Plant Pathogens, Reading, 16-17 April 2012 .

Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears

Hammond-Kosack, K. E., Brown, N. A., Urban, M. and Antoniw, J. F. 2012. Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 74

Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2012. Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 233

The top 10 fungal pathogens in molecular plant pathology

Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G. D. 2012. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13 (4), pp. 414-430. https://doi.org/10.1111/j.1364-3703.2011.00783.x

The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis

Brown, N. A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLOS ONE. 7, p. e33731 (14pp). https://doi.org/10.1371/journal.pone.0033731

Confidential report to Syngenta, January 2012

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2012. Confidential report to Syngenta, January 2012.

The induction of mycotoxins by trichothecene producing Fusarium species

Lowe, R., Jubault, M., Canning, G., Urban, M. and Hammond-Kosack, K. E. 2012. The induction of mycotoxins by trichothecene producing Fusarium species. in: Thomma, B. P. H. J. and Bolton, M. D. (ed.) Plant fungal pathogens: methods and protocols (Methods in Molecular Biology, Vol 835) Springer, Berlin. pp. 439-455

OmniMapFree a unified tool to visualise and explore sequenced genomes

Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp). https://doi.org/10.1186/1471-2105-12-447

WGIN Stakeholder's Newsletter [November 2011]

Hammond-Kosack, K. E. 2011. WGIN Stakeholder's Newsletter [November 2011]. WGIN Stakeholders' Newsletter. November.

The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum

Merhej, J., Urban, M., Dufresne, M., Hammond-Kosack, K. E., Richard-Forget, F. and Barreau, C. 2012. The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Molecular Plant Pathology. 13 (4), pp. 363-374. https://doi.org/10.1111/j.1364-3703.2011.00755.x

Minimum information about a bioactive entity (MIABE)

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2011. Minimum information about a bioactive entity (MIABE). Nature Reviews Drug Discovery. 10, pp. 661-669. https://doi.org/10.1038/nrd3503

Characterisation of the Fusarium graminearum-wheat floral interaction

Brown, N. A., Bass, C. G., Baldwin, T. K., Chen, Huaigu, Massot, F., Carion, P. W. C., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2011. Characterisation of the Fusarium graminearum-wheat floral interaction. Journal of Pathogens. 2011, p. 626345. https://doi.org/10.4061/2011/626345

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070

Virus-induced gene silencing system for functional genomics studies in wheat and related cereals

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14

Reducing take-all inoculum build-up during a first wheat crop

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat

Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347

Infection of the wheat ear by the fungus Fusarium culmorum

Van De Meene, A., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2011. Infection of the wheat ear by the fungus Fusarium culmorum. Abstracts Botanical Microscopy Conference, Wageningen, 16-21 April 2011 .

A new approach to reduce the risk of Take-all disease

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.

The unseen threat of symptomless Fusarium wheat ear infection

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2011. The unseen threat of symptomless Fusarium wheat ear infection. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 143-149

Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment

Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves

Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71. https://doi.org/10.1016/j.jplph.2010.05.024

Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206. https://doi.org/10.1111/j.1365-3059.2010.02375.x

The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears

Brown, N. A., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2010. The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biology. 114 (7), pp. 555-571. https://doi.org/10.1016/j.funbio.2010.04.006

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

The unseen threat to UK wheat production from Fusarium ear blight

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. The unseen threat to UK wheat production from Fusarium ear blight. Abstracts CropWorld, London, 1-3 November 2010 .

Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight. Abstracts 9th International Mycological Congress: the Biology of Fungi, Edinburgh, 1-6 August 2010 .

A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp

Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions. 23 (12), pp. 1605-1618. https://doi.org/10.1094/MPMI-04-10-0092

The Fusaria

Hammond-Kosack, K. E. 2010. The Fusaria.

A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum

Baldwin, T. K., Gaffoor, I., Antoniw, J. F., Andries, C., Guenther, J., Urban, M., Hallen-Adams, H. E., Pitkin, J., Hammond-Kosack, K. E. and Trail, F. 2010. A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Molecular Plant-Microbe Interactions. 23 (8), pp. 1083-1096. https://doi.org/10.1094/MPMI-23-8-1083

The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome

Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .

A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation

Baldwin, T. K., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2010. A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Molecular Plant-Microbe Interactions. 23 (5), pp. 566-577. https://doi.org/10.1094/MPMI-23-5-0566

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Ma, L-J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W-B., Woloshuk, C., Xie, X., Xu, J-R., Antoniw, J. F., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P., Danchin, E. G. J., Diener, A., Gale, L. R. and Hammond-Kosack, K. E. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464, pp. 367-373. https://doi.org/10.1038/nature08850

Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats

Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009

Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec

Walton, J. D., Avis, T. J., Alfano, J. R., Gijzen, M., Spanu, P., Hammond-Kosack, K. E. and Sanchez, M. 2009. Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec. Molecular Plant-Microbe Interactions. 22 (12), pp. 1479-1483. https://doi.org/10.1094/MPMI-22-12-1479

Pest wars - press paper

Lucas, J. A., Field, L. M., Cools, H. J. and Hammond-Kosack, K. E. 2009. Pest wars - press paper. Pest Wars: British Science Festival, Guildford, 8 September 2009 .

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue

Hammond-Kosack, K. E., Freeman, A., Desmouceaux, N., Urban, M. and Cuzick, A. 2009. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 .

Molecular and genetic studies on Fusarium Ear Blight disease of wheat

Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .

Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .

A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18

Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .

Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research

Hammond-Kosack, K. E., Urban, M., Franklin, J. F. and Taberer, R. 2009. Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research.

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum

Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp). https://doi.org/10.1186/1471-2164-10-458

High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley

Hofinger, B. J., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics. 119, pp. 851-865. https://doi.org/10.1007/s00122-009-1094-2

High resolution melting curve analysis for mutation detection in plants: a case study in barley

Hofinger, B. J., Bass, C. G., Baldwin, T., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High resolution melting curve analysis for mutation detection in plants: a case study in barley. Abstracts Monogram Network Workshop, Bristol, 29 April-1 May 2009 . pp. 28

Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola

Motteram, J., Kufner, I., Deller, S., Brunner, F., Hammond-Kosack, K. E., Nurnberger, T. and Rudd, J. J. 2009. Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Molecular Plant-Microbe Interactions. 22 (7), pp. 790-799. https://doi.org/10.1094/MPMI-22-7-0790

Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues

Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions. 22 (5), pp. 560-574. https://doi.org/10.1094/MPMI-22-5-0560

Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers

Cuzick, A., Maguire, K. and Hammond-Kosack, K. E. 2009. Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. New Phytologist. 181, pp. 901-912. https://doi.org/10.1111/j.1469-8137.2008.02712.x

Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5. WGIN Stakeholders' Newsletter. October, pp. 1-4.

Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction

Jing, H-C., Lovell, D. J., Gutteridge, R. J., Jenk, D., Kornyukhin, D., Mitrofanova, O., Kema, G. H. J. and Hammond-Kosack, K. E. 2008. Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytologist. 179, pp. 1121-1132. https://doi.org/10.1111/j.1469-8137.2008.02526.x

Take-all and the Wheat Genetic Improvement Network (WGIN)

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Take-all and the Wheat Genetic Improvement Network (WGIN). RRA Newsletter. 27, pp. 1-2.

Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Gordon Research Conference on Cellular and Molecular Fungal Biology, Holderness, New Hampshire, 29 June - 4 July 2008 .

Genomic analysis of transcriptional regulators of Fusarium graminearum

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Genomic analysis of transcriptional regulators of Fusarium graminearum.

Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains

Urban, M., Lowe, R., Allwood, W., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2008. Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains.

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Pathogenicity determinants of Fusarium graminearum on wheat ears

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts BSPP Presidentail Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 11

Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX

Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E. 2008. Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX.

Pathogenicity determinants of Fusarium graminearum on wheat ears

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, 22 September 2008 .

Pathogenicity determinants of Fusarium graminearum on wheat ears

Beacham, A. M., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Asbtracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 . pp. PR1.24

Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor

Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor.

How can molecular genetic informtion on plant pathogens benefit disease management?

Hammond-Kosack, K. E. 2008. How can molecular genetic informtion on plant pathogens benefit disease management? Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 5

Plant resistance signalling hijacked by a necrotrophic fungal pathogen

Hammond-Kosack, K. E. and Rudd, J. J. 2008. Plant resistance signalling hijacked by a necrotrophic fungal pathogen. Plant Signaling and Behavior. 3, pp. 993-995.

Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts BSPP Preseidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 9

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 13

Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease

Jing, H-C., Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease. RRA Newsletter. 27, pp. 3-4.

Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection

Rudd, J. J., Keon, J. P. R., Motteram, J., Pirie, E. J. and Hammond-Kosack, K. E. 2008. Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Investigating resistance mechanisms to furoviruses in wheat and barley

Lyons, R., Yilmaz, N. D. K., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Investigating resistance mechanisms to furoviruses in wheat and barley. Abstracts 14th International Congress of Virology, Istanbul, 10-15 August 2008 .

Characterisation of resistance to furoviruses in wheat and barley

Lyons, R., Yilmaz, N. D. K., Zlatska, A., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Characterisation of resistance to furoviruses in wheat and barley. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 .

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Molecular Biology of Plant Pathogens, Birnam, 17-19 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Molecular Plant-Microbe Interactions. 21 (9), pp. 1193-1204. https://doi.org/10.1094/MPMI-21-9-1193

Exploring resistance in wheat to Fusarium ear blight disease

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to Fusarium ear blight disease.

Exploring resistance in wheat to fusarium ear blight disease

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to fusarium ear blight disease. Abstracts 10th International Fusarium Workshop, Alghero, 30 August-2 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers

Cuzick, A., Lee, S., Gezan, S. and Hammond-Kosack, K. E. 2008. NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. Molecular Plant Pathology. 9 (5), pp. 697-704. https://doi.org/10.1111/J.1364-3703.2008.00488.X

Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley. Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .

The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola

Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815. https://doi.org/10.1104/pp.108.119511

Resistance genes (R genes) in plants

Hammond-Kosack, K. E. and Kanyuka, K. 2008. Resistance genes (R genes) in plants. in: Encyclopedia of life sciences John Wiley & Sons Chichester, West Sussex.

Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat

Kanyuka, K. and Hammond-Kosack, K. E. 2008. Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat. Abstracts 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008 .

The infection biology of Fusarium graminearum single gene deletion strains

Brown, N. A., Baldwin, T., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology of Fusarium graminearum single gene deletion strains. Abstracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 .

PHI-base update: additions to the pathogen-host interaction database

Winnenburg, R., Urban, M., Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, C. J., Hammond-Kosack, K. E. and Kohler, J. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Research. 36, pp. D572-D576. https://doi.org/10.1093/nar/gkm858

Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue

Cuzick, A., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. New Phytologist. 177 (4), pp. 990-1000. https://doi.org/10.1111/j.1469-8137.2007.02333.x

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6)

Jing, H-C., Gutteridge, R. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6). WGIN Stakeholders' Newsletter. October, pp. 3-6.

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

Cuomo, C. A., Guldener, U., Xu, J-R., Trail, F., Turgeon, B. G., Di Pietro, A., Walton, J. D., Ma, L-J., Baker, S. E., Rep, M., Adam, G., Antoniw, J. F., Baldwin, T., Calvo, S., Chang, Y-L., Decaprio, D., Gale, L. R., Gnerre, S., Goswami, R. S., Hammond-Kosack, K. E., Harris, L. J., Hilburn, K., Kennell, J. C., Kroken, S., Magnuson, J. K., Mannhaupt, G., Mauceli, E., Mewes, H-W., Mitterbauer, R., Munsterkotter, M., Nelson, D., O'donnell, K., Ouellet, T., Qi, W., Quesneville, H., Roncero, M. I. G., Seong, K-Y., Tetko, I. V., Urban, M., Waalwijk, C., Ward, T. J., Yao, J., Birren, B. W. and Kistler, H. C. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science. 317, pp. 1400-1402. https://doi.org/10.1126/science.1143708

Molecular genetic and genomic analysis of wheat-pathogen interactions

Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6

Jing, H-C. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6. Special WGIN Resources Newsletter. March 2007, pp. 2-6.

Wheat pathogens affecting yield and quality

Hammond-Kosack, K. E. 2007. Wheat pathogens affecting yield and quality. Abstracts China-UK Wheat Workshop, Beijing, 10-11 December 2007 . pp. 20-21

Can information on the mode of pathogen attack be used to formulate novel crop protection strategies?

Rudd, J. J., Jing, H-C. and Hammond-Kosack, K. E. 2007. Can information on the mode of pathogen attack be used to formulate novel crop protection strategies? Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 706-707

Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions

Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Triticum monococcum as a reference species for wheat genetics and genomics

Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

A re-emerging threat to wheat crops - Black Stem Rust

Hammond-Kosack, K. E. 2007. A re-emerging threat to wheat crops - Black Stem Rust. RRA Newsletter. Issue 24, p. 2.

Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant

Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

Cuzick, A., Urban, M., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2007. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 52

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue

Hammond-Kosack, K. E., Cuzick, A., Lee, S., Daudi, A., Bass, C. G., Maguire, K. and Urban, M. 2007. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 107-108

Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum

Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764. https://doi.org/10.1093/jxb/erm225

DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective

Lowe, R., Allwood, J. W., Urban, M., Beale, M. H., Ward, J. L. and Hammond-Kosack, K. E. 2007. DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 64

Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum

Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms

Jing, H-C. and Hammond-Kosack, K. E. 2007. Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 377-378

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Grain fungus genome published

Antoniw, J. F., Baldwin, T., Urban, M. and Hammond-Kosack, K. E. 2007. Grain fungus genome published. EPSO News. No. 3.

Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat

Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 53

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

Identifying resistance to Fusarium Ear Blight in wheat

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2007. Identifying resistance to Fusarium Ear Blight in wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Exploring resistance to Fusarium ear blight

Lee, S. and Hammond-Kosack, K. E. 2007. Exploring resistance to Fusarium ear blight. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants

Baldwin, T. K., Winnenburg, R., Beacham, A., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2007. PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm

Zlatska, A., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm. Abstracts 15th International Conference on Plant and Animal Genomes, San Diego, 13-17 January 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts 24th Fungal Genetics Conference, Asilomar, 20-25 March 2007 . pp. 152

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions. 20 (2), pp. 178-193. https://doi.org/10.1094/MPMI-20-2-0178

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

Jing, H-C and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. April, pp. 2-3.

Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum

Bass, C. G., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum. Abstracts 8th European Conference of Fungal Genetics, Vienna, 8-11 April 2006 . pp. 364

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Hammond-Kosack, K. E. and Rudd, J. J. 2006. The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 351

Building trans-Atlantic links in fight against plant pathogen

Hammond-Kosack, K. E. 2006. Building trans-Atlantic links in fight against plant pathogen. BBSRC Business. October 2006, p. 4.

The host: Resistance gene isolation and realising the potential

Hammond-Kosack, K. E. 2006. The host: Resistance gene isolation and realising the potential. Abstracts British Society for Plant Pathology 25th Anniversary Celebratory Meeting, London, 19 December 2006 .

BIOEXPLOIT Project

Hammond-Kosack, K. E., Tomas, J. and Smant, G. 2006. BIOEXPLOIT Project. EUCARPIA Bulletin. 33, pp. 32-35.

To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2

Hammond-Kosack, K. E. 2006. To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2.

Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2

Hammond-Kosack, K. E. 2006. Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2.

Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene

Barker, C. L., Baillie, B. K., Hammond-Kosack, K. E., Jones, J. D. G. and Jones, D. A. 2006. Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal. 46, pp. 385-399. https://doi.org/10.1111/j.1365-313X.2006.02699.x

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

Baldwin, T. K., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. In %Abstracts Syngenta Postgraduate Symposium, Bracknell, 14 September 2006 .

Forward genetics for gene discovery in wheat

Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

Baldwin, T. K., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts 9th International Fungal Biology Conference and 16th New Phytologist Symposium on Impact of Genomics on Fungal Biology, Nancy, 18-20 September 2006 . pp. 17-18

Triticum monococcum, the ancient grain which turned stone age nomads into farmers

Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13

The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity

Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Molecular Plant-Microbe Interactions. 19 (12), pp. 1451-1462. https://doi.org/10.1094/MPMI-19-1451

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

Cuzick, A., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2006. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts 17th International Conference on Arabidopsis Research, Madison, 28 June-2 July 2006 .

The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2006. The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome. 49, pp. 1140-1148. https://doi.org/10.1139/G06-064

Improving the diversity of resistance in wheat to Fusarium ear blight disease

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of resistance in wheat to Fusarium ear blight disease. Abstracts 9th European Fusarium Seminar, Wageningen, 19-22 September 2006 . pp. 100

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens Meeting, Birnam, 18-20 September 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Annual Scientific Meeting of the British Mycological Society, Birmingham, 4-7 September 2006 . pp. 68

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Biology and Bioscience CASE PhD Open Day, Bracknell, 14 September 2006 .

Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease. Abstracts Cranfield University Postgraduate Conference, Cranfield, 29 June 2006 .

Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2006. Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus. Abstracts International Conference on Advances in Plant Virology, Warwick, 5-7 April 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 355

PHI-base: a new database for pathogen host interactions

Winnenburg, R., Baldwin, T. K., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. PHI-base: a new database for pathogen host interactions. Nucleic Acids Research. 34 (1), pp. D459-D464. https://doi.org/10.1093/nar/gkj047

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts Molecular Biology of Plant Pathogens Meeting, Ambleside, 19-21 September 2005 .

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts ESF-EMBO Symposium on the Comparative Genomics of Eukaryotic Microorganisms, Sant Feliu de Guixols, 12-17 November 2005 .

The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2005. The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 113

Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 137

Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

New approaches for durable disease resistance in wheat

Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970

Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling

Keon, J. P. R., Rudd, J. J., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling. Molecular Plant Pathology. 6 (5), pp. 527-540. https://doi.org/10.1111/J.1364-3703.2005.00304.X

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts LAMP (London Area Molecular Plant Sciences) Meeting, Wye, 5 October 2005 .

Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp

Eckert, M., Maguire, K. L., Urban, M., Foster, S. J., Fitt, B. D. L., Lucas, J. A. and Hammond-Kosack, K. E. 2005. Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp. FEMS Microbiology Letters. 253, pp. 67-74. https://doi.org/10.1016/j.femsle.2005.09.041

Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1

Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 4th Plant Genomics European Meetings (Plant-GEMs 4), Amsterdam, 20-23 September 2005 .

Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2005. Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Lovain-la-Neuve, 12-14 September 2005 .

Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus

Lyons, R., Hammond-Kosack, K. E., Dickinson, M. and Kanyuka, K. 2005. Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Louvain-la-Neuve, 12-14 September 2005 . pp. 57

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 16th International Conference on Arabidopsis Research, Madison, 15-19 June 2005 . pp. No 530

Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici)

Keon, J. P. R., Antoniw, J. F., Rudd, J. J., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici). Fungal Genetics and Biology. 42, pp. 376-389. https://doi.org/10.1016/j.fgb.2004.12.005

DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004)

Hammond-Kosack, K. E. 2004. DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004).

Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi

Maguire, K., Dickinson, M., Bowyer, P., Perrone, S., Lucas, J. A. and Hammond-Kosack, K. E. 2004. Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi. Abstracts 7th European Conference on Fungal Genetics, Copenhagen, 17-20 April 2004 .

Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens

Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. 2004. Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 54

Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops

Hammond-Kosack, K. E., Urban, M., Baldwin, T., Daudi, A., Rudd, J. J., Keon, J., Lucas, J. A., Magiure, K., Kornyukhin, D., Jing, H-C., Bass, C. G. and Antoniw, J. F. 2004. Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26 September-1 October 2004 . Regional Institute, Gosford. pp. www.cropscience.org.au

A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance

Kanyuka, K., Lovell, D. J., Mitrofanova, O. P., Hammond-Kosack, K. E. and Adams, M. J. 2004. A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance. Plant Pathology. 53 (2), pp. 154-160. https://doi.org/10.1111/j.1365-3059.2004.01000.x

The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia

Urban, M., Mott, E., Farley, T. and Hammond-Kosack, K. E. 2003. The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia. Molecular Plant Pathology. 4 (5), pp. 347-359. https://doi.org/10.1046/J.1364-3703.2003.00183.X

Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi

Maguire, K., Dickinson, M., Bowyer, P., Lucas, J. A. and Hammond-Kosack, K. E. 2003. Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi. Abstracts BSPP Presidential Meeting 2003: Plant Pathogen Genomics - from Sequence to Application, Nottingham, 15-18 December 2003 . pp. 42-43

p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens

Von Roepenack-Lahaye, E., Newman, M-A., Schornack, S., Hammond-Kosack, K. E., Lahaye, T., Jones, J. D. G., Daniels, M. J. and Dow, J. M. 2003. p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens. Journal of Biological Chemistry. 278, pp. 43373-43383.

Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding

Hammond-Kosack, K. E. and Parker, J. E. 2003. Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology. 14, pp. 177-193.

Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum

Daudi, A., Urban, M. and Hammond-Kosack, K. E. 2003. Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum. Abstracts SCI Student Conference on Advances in Fungal Control Strategies, Bracknell, 29 April 2003 .

Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum

Urban, M., Daniels, S., Mott, E. and Hammond-Kosack, K. E. 2002. Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum. The Plant Journal. 32 (6), pp. 961-973. https://doi.org/10.1046/j.1365-313X.2002.01480.x

Projects

[20:20 Wheat] Protecting yield potential of wheat

A FAIR community resource for pathogens, hosts and their interactions to enhance global food security and human health

BBSRC Embrapa - Using HIGS and si-RNA technologies to explore and control Fusarium Head Scab disease in wheat fields

Defining the signalling network linking pathogen infection and asparagine accumulation in wheat grain

Delivering Sustainable Wheat

DFW - Designing Future Wheat - Work package 2 (WP2) - Added value and resilience

DiseaseNetMiner - A novel tool for mining integrated biological networks of host and pathogen interaction

Functional genomic analysis of interactions between Mycoshaerella graminicola & wheat plants: investigating genes related to early stages of infection

Fungal effectors as activators of novel resistances in cereals

Pathogen-Host Interactions Database: PHI Database [2012-2017]

PhytoPath, an infrastructure for hundreds of plant pathogen genomes

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