Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens
C2 - Non-edited contributions to conferences
Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. 2004. Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 54
| Authors | Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. |
|---|---|
| Type | C2 - Non-edited contributions to conferences |
| Year of Publication | 2004 |
| Funder project or code | 505 |
| Page range | 54 |
Related outputs
A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS)
B - Book chapters etc edited externally
Desjardins, S., Kanyuka, K. and Higgins, J. D. 2020. A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS). in: Pradillo, M. and Heckmann, S. (ed.) Plant Meiosis. Methods in Molecular Biology, vol 2061. New York, NY Humana Press Inc. pp. 319-330
A roadmap for gene functional characterisation in wheat
A - Papers appearing in refereed journals
Adamski, N. M., Borril, P., Brinton, J., Harrington, S. A., Marchal, C., Bentley, A. R., Bovill, W. D., Cattivelli, L., Cockram, J., Contreras-Moreira, B., Ford, B., Ghosh, S., Harwood, W., Hassani-Pak, K., Hayta, S., Hickey, L. T., Kanyuka, K., King, J., Maccaferri, M., Naamati, G., Pozniak, C. J., Ramirez-Gonzalez, R. H., Sansaloni, C., Trevaskis, B., Wingen, L. U., Wulff, B. B. H. and Uauy, C. 2019. A roadmap for gene functional characterisation in wheat. PeerJ. 7, p. e26877v2.
PHI-base - the Pathogen–Host Interactions database
A - Papers appearing in refereed journals
Urban, M., Cuzick, A., Seager, J., Wood, V., Rutherford, K., De Silva, N., Venkatesh, S. Y, Martinez, M. C., Pedro, H., Yates, A. D., Hassani-Pak, K. and Hammond-Kosack, K. E. 2019. PHI-base - the Pathogen–Host Interactions database . Nucleic Acids Research. Database issue.
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets
A - Papers appearing in refereed journals
Janowska-Seja, E. I., Lysenko, A., Urban, M., Rawlings, C. J., Toska, S. and Hammond-Kosack, K. E. 2019. PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. Frontiers in Microbiology. 10 (2721).
Improving disease resistance in mungbean - A combined genetic and biotechnological approach
Conference poster
Bansal, A., Nekrasov, V., Rout, G. R., Rudd, J. J., Slavov, G., Chand, R. and Kanyuka, K. 2019. Improving disease resistance in mungbean - A combined genetic and biotechnological approach. BSPP 2019: Arms race: Evolution of plant pathogens and their hosts. Exhibition and Conference Centre, University of West England, Bristol, UK 02 Sep 2019
Characteristics and distribution of Colletotrichum species in coffee plantations in Hainan, China
A - Papers appearing in refereed journals
Cao, X. R., Xu, X. M., Che, H. Y., West, J. S. and Luo, D. Q. 2019. Characteristics and distribution of Colletotrichum species in coffee plantations in Hainan, China. Plant Pathology. 68 (6), pp. 1146-1156.
sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem
A - Papers appearing in refereed journals
Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem. Frontiers in Plant Science. 10 (892).
First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus
A - Papers appearing in refereed journals
King, K. M., Hawkins, N. J., Atkins, S. L., Dyer, P. S., West, J. S. and Fraaije, B. A. 2019. First application of loop-mediated isothermal amplification (LAMP) assays for rapid identification of mating type in the heterothallic fungus Aspergillus fumigatus . Mycoses.
Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat
A - Papers appearing in refereed journals
Dilks, T., Halsey, K., De Vos, R., Hammond-Kosack, K. E. and Brown, N. A. 2019. Non-canonical fungal G-protein coupled receptors promote Fusarium head blight on wheat. PLOS Pathogens. 15 (4), p. e1007666.
WGIN Stakeholders' Newsletter [April 2019]
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E., Riche, A. B., Mcmillan, V. E., Aradottir, G. I., Hammond-Kosack, M., Lister, C. and Griffiths, S. 2019. WGIN Stakeholders' Newsletter [April 2019]. WGIN Stakeholders' Newsletter.
The Challenges Posed by Global Broadacre Crops in Delivering Smart Agri- Robotic Solutions: A Fundamental Rethink is Required
A - Papers appearing in refereed journals
Grieve, B. D., Duckett, T., Collinson, M., Boyd, L., West, J. S., Yin, H., Arvin, F. and Pearson, S. 2019. The Challenges Posed by Global Broadacre Crops in Delivering Smart Agri- Robotic Solutions: A Fundamental Rethink is Required. Global Food Security. 23, pp. 116-124.
Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction
C2 - Non-edited contributions to conferences
Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019
GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis
A - Papers appearing in refereed journals
Chakraborty, N., Kanyuka, K., Kumar Jaiswal, D., Kumar, A., Arora, V., Malik, A., Gupta, N., Hooley, R. and Raghuram, N. 2019. GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis. Scientific Reports. 9, p. 5838.
Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici
C2 - Non-edited contributions to conferences
Dodds, P., Upadhyaya, N., Ortiz, D., Li, F., Chen, J., Miller, M., Luo, M., Mago, R., Ellis, J., Sperschneider, J., Nguyen-Phuc, H., Bouton, C., Steffenson, B., Hirsch, C., Silverstein, K., Park, R., Kanyuka, K. and Figueroa, M. 2019. Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019
Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici
Conference paper
Stephens, C., Blyth, H., Olmez, F., Turgay, E. B., Chen, H., McDonald, M., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2019. Dramatic recent changes in the population genetic diversity of avirulence gene AvrStb6 in the pathogenic fungus Zymoseptoria tritici. Molecular Biology of Plant Pathogens (MBPP) Conference. John Innes Centre, Norwich, UK 18 Mar 2019
Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat.
Conference poster
Tidd, H., Bryant, R and Kanyuka, K. 2019. Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat. International Symposium on Cereal Leaf Blights 2019. University College Dublin, Dublin, Ireland 22 May 2019
Cell surface immune receptors: the guardians of the plant’s extracellular spaces
A - Papers appearing in refereed journals
Kanyuka, K. and Rudd, J. J. 2019. Cell surface immune receptors: the guardians of the plant’s extracellular spaces. Current Opinion in Plant Biology. 50, pp. 1-8.
The role of photoprotection in disease resistance to Septoria tritici blotch in wheat
C2 - Non-edited contributions to conferences
Angelopoulou, D., Kanyuka, K., Murchie, E. and Ray, R. 2019. The role of photoprotection in disease resistance to Septoria tritici blotch in wheat. International Symposium on Cereal Leaf Blights 2019. University College Dublin, Dublin, Ireland 22 May 2019
Knocking down wheat meiotic genes through Virus-induced gene-silencing (VIGS)
C2 - Non-edited contributions to conferences
Desjardins, S., Kanyuka, K. and Higgins, J. D. 2019. Knocking down wheat meiotic genes through Virus-induced gene-silencing (VIGS). The Plant and Animal Genome XXVII Conference (PAG). San Diego, CA, USA 12 Jan 2019
MSH2 is required for obligate crossover formation in wheat
C2 - Non-edited contributions to conferences
Ogle, D., Desjardins, S., Gutterman, I., Simmonds, J., Uauy, C., Kanyuka, K. and Higgins, J. D. 2019. MSH2 is required for obligate crossover formation in wheat. The Plant and Animal Genome XXVII Conference (PAG). San Diego, CA, USA 12 Jan 2019
A loop-mediated isothermal amplification (LAMP) assay for rapid and specific detection of airborne inoculum of Uromyces betae (sugar beet rust)
A - Papers appearing in refereed journals
Kaczmarek, A. M., King, K. M., West, J. S., Stevens, M., Sparkes, D. and Dickinson, M. 2019. A loop-mediated isothermal amplification (LAMP) assay for rapid and specific detection of airborne inoculum of Uromyces betae (sugar beet rust). Plant Disease. 103 (3), pp. 417-421.
Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome
C1 - Edited contributions to conferences/learned societies
Machado, A., King, R., Urban, M., Del Ponte, E. M., Tessmann, D. J., Kanyuka, K. and Hammond-Kosack, K. E. 2018. Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). doi:10.1094/PHYTO-108-10-S1.1
Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici
C2 - Non-edited contributions to conferences
Upadhyaya, N. M., Ortiz, D., Chen, J., Ellis, J., Li, F., Mago, R., Kanyuka, K., Figueroa, M., Park, R. F. and Dodds, P. 2018. Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). doi:10.1094/PHYTO-108-10-S1.1
Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions
A - Papers appearing in refereed journals
Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2018. Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions. bioRxiv.
Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas)
A - Papers appearing in refereed journals
King, K. M., Krivova, V., Canning, G. G. M., Hawkins, N. J., Kaczmarek, A. M., Perryman, S. A. M., Dyer, P. S., Fraaije, B. A. and West, J. S. 2018. Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas). Plant Pathology. 67 (1), pp. 167-174.
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
A - Papers appearing in refereed journals
Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808.
Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici
A - Papers appearing in refereed journals
Kettles, G. J., Bayon, C., Sparks, C. A., Canning, G., Kanyuka, K. and Rudd, J. J. 2018. Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici. New Phytologist. 217 (1), pp. 320-331.
Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat
A - Papers appearing in refereed journals
Derbyshire, M. C., Gohari, A. M., Mehrabi, R., Kilaru, S., Steinberg, G., Ali, S., Bailey, A., Hammond-Kosack, K. E., Kema, G. H. J. and Rudd, J. J. 2018. Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat. Scientific Reports. 8 (17069).
Detecting Wheat Powdery Mildew and Predicting Grain Yield Using Unmanned Aerial Photography
A - Papers appearing in refereed journals
Liu, W., Cao, X., Fan, J, Wang, Z., Yan, Z., Luo, Y., West, J. S., Xu, X. and Zhou, Y. 2018. Detecting Wheat Powdery Mildew and Predicting Grain Yield Using Unmanned Aerial Photography. Plant Disease. 102, pp. 1981-1988.
Forecasting sclerotinia infection in UK oilseed rape
C1 - Edited contributions to conferences/learned societies
Young, C., Canning, G. and West, J. S. 2018. Forecasting sclerotinia infection in UK oilseed rape. Iobc.
The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).
A - Papers appearing in refereed journals
Hellin, P., King, R., Urban, M., Hammond-Kosack, K. E. and Legreve, A 2018. The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1). Frontiers in Microbiology. 9 (1385).
Arable Crop Disease Alert System - AHDB Project Report 594
D1 - Technical reports: non-confidential
West, J. S., Canning, G., King, K. M., Fraaije, B. A. and Wili, S. 2018. Arable Crop Disease Alert System - AHDB Project Report 594. Stoneleigh Home Grown Cereals Authority (HGCA).
Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum
A - Papers appearing in refereed journals
King, R., Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2018. Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics. 19, p. 269.
Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi
A - Papers appearing in refereed journals
Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115.
Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen
A - Papers appearing in refereed journals
Mcmillan, V. E., Canning, G., Moughan, J., White, R. P., Gutteridge, R. J. and Hammond-Kosack, K. E. 2018. Exploring the resilience of wheat crops grown in short rotations through minimising the build-up of an important soil-borne fungal pathogen. Scientific Reports. 8 (9550), pp. 1-13.
Foxtail mosaic virus: a new viral vector for protein expression in cereals
A - Papers appearing in refereed journals
Bouton, C., King, R., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E. and Kanyuka, K. 2018. Foxtail mosaic virus: a new viral vector for protein expression in cereals. Plant Physiology. 177 (4), pp. 1352-1367.
Shifting the limits in wheat research and breeding using a fully annotated reference genome
A - Papers appearing in refereed journals
International Wheat Genome Sequencing Consortium (IWGSC), Kanyuka, K. and King, R. 2018. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science - AAAS. 361 (6403), p. eaar7191.
Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China
A - Papers appearing in refereed journals
Cao, X., Xu, X., Che, H., West, J. S. and Luo, D. 2018. Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China. Plant Disease. 103 (1), pp. 117-124.
Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb)
A - Papers appearing in refereed journals
Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. and Bregitzer, P. P. 2018. Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb). Fungal Genetics and Biology. 115 (June), pp. 90-93.
Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici
A - Papers appearing in refereed journals
Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374.
Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU
A - Papers appearing in refereed journals
Van Bruggen, A. H. C., West, J. S., Van der Werf, W., Potting, R. P. J., Gardi, C., Koufakis, I., Zelenev, V. V., Narouei-Khandan, H., Schilder, A. and Harmon, P. 2018. Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU. Annals of Applied Biology. 172 (2), pp. 126-147.
Inoculum potential of Sclerotinia sclerotiorum sclerotia depends on isolate and host plant
A - Papers appearing in refereed journals
Taylor, A., Coventry, E., Handy, C., West, J. S., Young, C. S. and Clarkson, J. P. 2018. Inoculum potential of Sclerotinia sclerotiorum sclerotia depends on isolate and host plant. Plant Pathology. 67 (6), pp. 1286-1295.
The potential of fluorescence imaging to distinguish insect pest and non-pest species
A - Papers appearing in refereed journals
Perryman, S. A. M., Shortall, C. R., Halsey, K. and West, J. S. 2018. The potential of fluorescence imaging to distinguish insect pest and non-pest species.
Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America
C2 - Non-edited contributions to conferences
Carmody, S., King, K. M., Classen, B., Fraaije, B. A., West, J. S., Ocamb, C. M. and du Toit, L. 2017. Genetic analysis of Pyrenopeziza brassicae, cause of light leaf spot of brassicas, in the European Union, Oceania, and North America. APS Annual Meeting, San Antonio, Texas, USA, August 5-9, 2017. American Phytopathological Society (APS). doi:10.1094/PHYTO-107-12-S5.1
Detection of biotic and abiotic stresses in crops by using hierarchical self organizing classifiers
A - Papers appearing in refereed journals
Pantazi, X., Dimitrios, M., Oberti, R., West, J. S., Mouazen, A. and Bochtis, D. 2017. Detection of biotic and abiotic stresses in crops by using hierarchical self organizing classifiers. Precision Agriculture. 18 (3), p. 383–393.
Identification of pest and disease resistance in the UK OREGIN Brassica biodiversity collection
C1 - Edited contributions to conferences/learned societies
Huang, Y. J., West, J. S., Mitrousia, G. K., Wood, T. and Fitt, B. D. L. 2017. Identification of pest and disease resistance in the UK OREGIN Brassica biodiversity collection. Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .
Distribution and Fungicide Sensitivity of Colletotrichum Species Complexes from Rubber Tree in Hainan, China
A - Papers appearing in refereed journals
Cao, X. R., Xu, X. M., Che, H. Y., West, J. S. and Luo, D. Q. 2017. Distribution and Fungicide Sensitivity of Colletotrichum Species Complexes from Rubber Tree in Hainan, China. Plant Disease. 101 (10), pp. 1774-1780.
Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains
C2 - Non-edited contributions to conferences
Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.
Precision disease protection systems for agriculture and horticulture
C1 - Edited contributions to conferences/learned societies
West, J. S., Canning, G., Perryman, S. A. M., Kaczmarek, A. and King, K. M. 2017. Precision disease protection systems for agriculture and horticulture. In : Precision systems in agricultural and horticultural production 2017, AAB135. Association of Applied Biologists (AAB).
Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat
C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713
Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields
C2 - Non-edited contributions to conferences
Kanyuka, K., Machado, A., Urban, M., Lee, W. S., Brown, N. J., King, R. A., Lau, E. Y., Sparks, C. A., Bonato, A. L. V., Tibola, C. S., Martins, N. F., Aragao, F. J., West, J., Fernandes, J. M. C. and Hammond-Kosack, K. E. 2017. Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields. 1st COST iPlanta Conferernce; "Creating the plant RNAi research network CA15223", La Sapienza - CNR Headquarter , Rome, Italy, 15-17 February 2017.
Pest categorisation of Ips sexdentatus
D1 - Technical reports: non-confidential
EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M. and Grégoire, J-C. 2017. Pest categorisation of Ips sexdentatus. doi:10.2903/j.efsa.2017.4999
Pest categorisation of Pseudocercospora pini-densiflorae
D1 - Technical reports: non-confidential
EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P. and Pautasso, M. 2017. Pest categorisation of Pseudocercospora pini-densiflorae. doi:10.2903/j.efsa.2017.5029
Pest categorisation of Gremmeniella abietina
D1 - Technical reports: non-confidential
EFSA Panel on Plant Health (PLH), Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P. and Pautasso, M. 2017. Pest categorisation of Gremmeniella abietina. doi:10.2903/j.efsa.2017.5030
Citrus junos as a host of citrus bacterial canker
D1 - Technical reports: non-confidential
Jeger, M., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Pruvost, O., Kozelska, S., Guajardo, I. M., Bragard, C. and EFSA Panel on Plant Health (PLH) 2017. Citrus junos as a host of citrus bacterial canker. doi:10.2903/j.efsa.2017.4876
Pest categorisation of Entoleuca mammata
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Gonthier, P., Pautasso, M. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Entoleuca mammata. doi:10.2903/j.efsa.2017.4925
Pest categorisation of Dendroctonus micans
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Dendroctonus micans. doi:10.2903/j.efsa.2017.4880
Pest risk assessment of Atropellis spp. for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Boberg, J., Puglia, A. P., Vettraino, A. M., Pautasso, M., Rossi, V. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Atropellis spp. for the EU territory. doi:10.2903/j.efsa.2017.4877
Pest categorisation of Anthonomus signatus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Czwienczek, E., Aukhojee, M., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Anthonomus signatus. doi:10.2903/j.efsa.2017.4882
Pest categorisation of Pseudocercospora angolensis
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Anton, J., Miret, J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gonzalez-Dominguez, E., Vicent, A., Vloutoglou, I., Bottex, B., Rossi, V. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Pseudocercospora angolensis. doi:10.2903/j.efsa.2017.4883
Pest categorisation of Ips typographus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips typographus. doi:10.2903/j.efsa.2017.4881
Pest categorisation of Spodoptera frugiperda
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Aukhojee, M., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Spodoptera frugiperda. doi:10.2903/j.efsa.2017.4927
Pest categorisation of Little cherry pathogen (non-EU isolates)
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Little cherry pathogen (non-EU isolates). doi:10.2903/j.efsa.2017.4926
Pest categorisation of Cadang-Cadang viroid
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Werf, W. V. D., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Cadang-Cadang viroid. doi:10.2903/j.efsa.2017.4928
Pest risk assessment of Radopholus similis for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Schans, J., Kozelska, S., Mosbach-Schulz, O., Urek, G. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Radopholus similis for the EU territory. doi:10.2903/j.efsa.2017.4879
Pest risk assessment of Diaporthe vaccinii for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Mosbach-Schulz, O., Koufakis, I., Van Bruggen, A. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Diaporthe vaccinii for the EU territory. doi:10.2903/j.efsa.2017.4924
Pest risk assessment of Eotetranychuslewisi for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Bergeretti, F., Bjorklund, N., Mosbach-Schulz, O., Vos, S., Navajas Navarro, M. and EFSA Panel on Plant Health (PLH) 2017. Pest risk assessment of Eotetranychuslewisi for the EU territory. doi:10.2903/j.efsa.2017.4878
Pest categorisation of Beet curly top virus (non-EU isolates)
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Beet curly top virus (non-EU isolates). doi:10.2903/j.efsa.2017.4998
Pest categorisation of Witches' broom disease of lime (Citrus aurantifolia) phytoplasma
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Dickinson, M., Marzachi, C., Hollo, G., Caffier, D. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Witches' broom disease of lime (Citrus aurantifolia) phytoplasma. doi:10.2903/j.efsa.2017.5027
Pest categorisation of Palm lethal yellowing phytoplasmas
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Dickinson, M., Marzachi, C., Hollo, G., Caffier, D. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Palm lethal yellowing phytoplasmas. doi:10.2903/j.efsa.2017.5028
Pest categorisation of Satsuma dwarf virus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Satsuma dwarf virus. doi:10.2903/j.efsa.2017.5032
Pest categorisation of Tatter leaf virus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Tatter leaf virus. doi:10.2903/j.efsa.2017.5033
Pest categorisation of Citrus tristeza virus (non-European isolates)
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Chatzivassiliou, E., Winter, S., Catara, A., Duran-Vila, N., Hollo, G., Candresse, T. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Citrus tristeza virus (non-European isolates). doi:10.2903/j.efsa.2017.5031
Pest categorisation of Hishimonus phycitis
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Jaques Miret, J. A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Gardi, C., Aukhojee, M., Bergeretti, F., MacLeod, A. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Hishimonus phycitis. doi:10.2903/j.efsa.2017.5037
Pest categorisation of Ips duplicatus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips duplicatus. doi:10.2903/j.efsa.2017.5040
Pest categorisation of Ips amitinus
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Kertesz, V., Aukhojee, M., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2017. Pest categorisation of Ips amitinus. doi:10.2903/j.efsa.2017.5038
RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals
A - Papers appearing in refereed journals
Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799.
A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection
A - Papers appearing in refereed journals
Brown, N. A., Evans, J., Mead, A. and Hammond-Kosack, K. E. 2017. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. Molecular Plant Pathology. 18 (9), pp. 1295-1312.
A review of wheat diseases – a field perspective
A - Papers appearing in refereed journals
Figueroa, M., Hammond-Kosack, K. E. and Solomon, P. S. 2017. A review of wheat diseases – a field perspective. Molecular Plant Pathology. 19 (6), pp. 1523-1536.
Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe
A - Papers appearing in refereed journals
Nicolaisen, M., West, J. S., Sapkota, R., Canning, G., Schoen, C. and Justesen, A. F. 2017. Fungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe. Frontiers in Microbiology. 8 (1729).
A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae
A - Papers appearing in refereed journals
Franco-Orozco, B., Berepiki, A., Ruiz, O., Gamble, L., Griffe, L. L., Wang, S., Birch, P. R. J., Kanyuka, K. and Avrova, A. 2017. A new proteinaceous pathogen-associated molecular pattern (PAMP) identified in Ascomycete fungi induces cell death in Solanaceae. New Phytologist. 214 (4), pp. 1657-1672.
Intra-diurnal and daily changes in Didymella ascospore concentrations in the air of an urban site
A - Papers appearing in refereed journals
Sadys, M. and West, J. S. 2017. Intra-diurnal and daily changes in Didymella ascospore concentrations in the air of an urban site. Fungal Ecology. 27A (June), pp. 87-95.
PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database
A - Papers appearing in refereed journals
Urban, M., Cuzick, A., Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar and Hammond-Kosack, K. E. 2017. PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. Nucleic Acids Research. 45 (D1), pp. D604-D610.
Novel technologies for the detection of Fusarium head blight disease and airborne inoculum
A - Papers appearing in refereed journals
West, J. S., Canning, G., Perryman, S. A. M. and King, K. M. 2017. Novel technologies for the detection of Fusarium head blight disease and airborne inoculum. Tropical Plant Pathology. 42 (3), pp. 203-209.
mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach
A - Papers appearing in refereed journals
Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3).
Annotation of Fusarium graminearum (PH-1) version 5.0
A - Papers appearing in refereed journals
King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16.
Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia
A - Papers appearing in refereed journals
Yang, P., Habekuss, A., Hofinger, Bernhard J., Kanyuka, K., Kilian, B., Graner, Andreas, Ordon, Frank and Stein, Nils 2017. Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theoretical and Applied Genetics. 130 (2), pp. 331-344.
Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana
A - Papers appearing in refereed journals
Kettles, G. J., Bayon, C., Canning, G., Rudd, J. J. and Kanyuka, K. 2017. Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana. New Phytologist. 213 (1), pp. 338-350.
A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces
A - Papers appearing in refereed journals
King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672.
Science protecting plant health conference (SPPH2017); 26-28 September, Brisbane, Australia
G - Articles in popular magazines and other technical publications
West, J. S. 2017. Science protecting plant health conference (SPPH2017); 26-28 September, Brisbane, Australia. Outlooks on Pest Management.
Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat
A - Papers appearing in refereed journals
Chen, J., Upadhyaya, N. M., Ortiz, D., Sperschneider, J., Li, F., Bouton, C., Breen, S., Dong, C., Xu, B., Zhang, X., Mago, R., Newell, K., Xia, X., Bernoux, M., Taylor, J. M., Steffenson, B., Jin, Y., Zhang, P., Kanyuka, K., Figueroa, M., Ellis, J. G., Park, R. F. and Dodds, P. N. 2017. Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat. Science - AAAS. 358 (6370), pp. 1607-1610.
Scientific opinion on four statements questioning the EU control strategy against Xylella fastidiosa
D1 - Technical reports: non-confidential
Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Scientific opinion on four statements questioning the EU control strategy against Xylella fastidiosa. doi:10.2903/j.efsa.2016.4450
Treatment solutions to cure Xylella fastidiosa diseased plants
D1 - Technical reports: non-confidential
Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Treatment solutions to cure Xylella fastidiosa diseased plants. doi:10.2903/j.efsa.2016.4456
Evaluation of new scientific information on Phyllosticta citricarpa in relation to the EFSA PLH Panel (2014) Scientific Opinion on the plant health risk to the EU
D1 - Technical reports: non-confidential
Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Evaluation of new scientific information on Phyllosticta citricarpa in relation to the EFSA PLH Panel (2014) Scientific Opinion on the plant health risk to the EU. doi:10.2903/j.efsa.2016.4513
Statement on diversity of Xylella fastidiosa subsp. pauca in Apulia EFSA Panel on Plant Health (PLH)
D1 - Technical reports: non-confidential
Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., Jeger, M., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S. and EFSA Panel on Plant Health (PLH) 2016. Statement on diversity of Xylella fastidiosa subsp. pauca in Apulia EFSA Panel on Plant Health (PLH). doi:10.2903/j.efsa.2016.4542
Susceptibility of Citrus spp., Quercus ilex and Vitis spp. to Xylella fastidiosa strain CoDiRO
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., De La Fuente, L., Lopes, J. R. S., Tramontini, S., Andueza, M., Candresse, T. and EFSA Panel on Plant Health (PLH) 2016. Susceptibility of Citrus spp., Quercus ilex and Vitis spp. to Xylella fastidiosa strain CoDiRO. doi:10.2903/j.efsa.2016.4601
Susceptibility of Phoenix roebelenii to Xylella fastidiosa
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Gregoire, J. C., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Tramontini, S., Andueza, M., Candresse, T. and EFSA Panel on Plant Health (PLH) 2016. Susceptibility of Phoenix roebelenii to Xylella fastidiosa. doi:10.2903/j.efsa.2016.4600
Risk to plant health of Flavescence doree for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Bosco, D., Foissac, X., Strauss, G., Hollo, G., Mosbach-Schulz, O., Gregoire, J. C. and EFSA Panel on Plant Health (PLH) 2016. Risk to plant health of Flavescence doree for the EU territory. Wiley. doi:10.2903/j.efsa.2016.4603
Risk assessment and reduction options for Ceratocystis platani in the EU
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Miret, J. A. J., MacLeod, A., Navarro, M. N., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Santini, A., Tsopelas, P., Vloutoglou, I., Pautasso, M., Rossi, V. and EFSA Panel on Plant Health (PLH) 2016. Risk assessment and reduction options for Ceratocystis platani in the EU. Wiley. doi:10.2903/j.efsa.2016.4640
Risk to plant health of Ditylenchus destructor for the EU territory
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Caffier, D., Candresse, T., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Grégoire, J-C., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Rossi, V., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Mosbach-Schulz, O. and Urek, G. 2016. Risk to plant health of Ditylenchus destructor for the EU territory. Wiley. doi:10.2903/j.efsa.2016.4602
Risk assessment and reduction options for Cryphonectria parasitica in the EU
D1 - Technical reports: non-confidential
Jeger, M., Bragard, C., Chatzivassiliou, E., Dehnen-Schmutz, K., Gilioli, G., Jaques Miret, J. A., MacLeod, A., Navajas Navarro, M., Niere, B., Parnell, S., Potting, R., Rafoss, T., Urek, G., Van Bruggen, A., Van Der Werf, W., West, J. S., Winter, S., Maresi, G., Prospero, S., Vettraino, A. M., Vloutoglou, I., Pautasso, M. and Rossi, V. 2016. Risk assessment and reduction options for Cryphonectria parasitica in the EU. doi:10.2903/j.efsa.2016.4641
GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.
A - Papers appearing in refereed journals
Bresso, E., Togawa, R., Hammond-Kosack, K. E., Urban, M., Maigret, B. and Martins, N. F. 2016. GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics. 17 (Suppl 18), p. 463.
Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen
A - Papers appearing in refereed journals
Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6.
An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat
C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22
Plans for a pest risk assessment of Diaporthe vaccinii in the European Union by the Plant Health Panel of the European Food Safety Authority
C1 - Edited contributions to conferences/learned societies
Van Bruggen, A., Gardi, C., Gilioli, G., Koufakis, I., Van Der Werf, W. and West, J. S. 2016. Plans for a pest risk assessment of Diaporthe vaccinii in the European Union by the Plant Health Panel of the European Food Safety Authority. Acta Horticulturae XI International Vaccination Sympoium, Orlando, Florida, USA, 10-14 April, 2016. pp. 182
Evolution of recessive resistance genes against the bymovirus disease of barley
C2 - Non-edited contributions to conferences
Yang, P., Habekuss, A., Hofinger, B. J., Kanyuka, K., Kilian, B., Graner, A., Ordon, F. and Stein, N. 2016. Evolution of recessive resistance genes against the bymovirus disease of barley. Abstacts 12th International Barely Genetics Symposium, Minneapolis, Minnesota, USA, 26-30 June, 2016. pp. Poster 215
A detailed curation of the Zymoseptoria tritici IPO323 gene annotation
C2 - Non-edited contributions to conferences
King, R., Rudd, J. J. and Kanyuka, K. 2016. A detailed curation of the Zymoseptoria tritici IPO323 gene annotation. Abstracts 9th International Symposium on Septoria Diseases of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. P0927
Resurrecting a 750-year-old plant virus
C2 - Non-edited contributions to conferences
Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.
A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley
C2 - Non-edited contributions to conferences
Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39
A cytotoxic effector from the wheat pathogen Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Kettles, G. J., Kanyuka, K. and Rudd, J. J. 2016. A cytotoxic effector from the wheat pathogen Zymoseptoria tritici. Abstract IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract No P6-144
Solanaceous species recognise a novel PAMP from Rhynchosporium commune
C2 - Non-edited contributions to conferences
Franco, B., Berepiki, A., Birch, P. R. J., Kanyuka, K. and Avrova, A. 2016. Solanaceous species recognise a novel PAMP from Rhynchosporium commune. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract No P7-170
The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein
C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434
Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants
C2 - Non-edited contributions to conferences
Kettles, G. J., King, R., Hooper, J., Skinner, W., Hargreaves, J., Kanyuka, K., Fraaije, B. A. and Rudd, J. J. 2016. Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants. IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number S6-3
Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680
Neotrophic effectors from Zymoseptoria tritici
C1 - Edited contributions to conferences/learned societies
Kettles, G. J., Kanyuka, K. and Rudd, J. J. 2016. Neotrophic effectors from Zymoseptoria tritici. 9th International Symposium of Septoria Disease of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. Speaker Abstracts Session 4 : Cell biology and host-pathogen interactions
A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots
C1 - Edited contributions to conferences/learned societies
Avrova, A., Franco, B., Berepiki, A., Birch, P. and Kanyuka, K. 2016. A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots. Abstracts 9th International Symposium on Spetoria Disease of Cereals (ISSDSC), Paris, France, 7-9 April, 2016.
Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes
C1 - Edited contributions to conferences/learned societies
Urban, M., Irvine, A., Cuzick, A. and Hammond-Kosack, K. E. 2016. Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. Proceedings 5th ISFHB - 2nd IWWB Symposium, 5-10, Florianopolis, Brasil.
Pollen dispersal in a hybrid cereal canopy
C1 - Edited contributions to conferences/learned societies
Sadys, M., West, J. S., Spiller, M., Melichar, G., Stiewe, G. and Reynolds, A. M. 2016. Pollen dispersal in a hybrid cereal canopy. In : Proceedings 6th European Symposium on Aerobiology, At Lyon, France, 18-22 July, 2016 . pp. Oral 2315
First draft genome sequence of a UK strain (UK99) of Fusarium culmorum
A - Papers appearing in refereed journals
Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16.
The genome of the emerging barley pathogen Ramularia collo-cygni
A - Papers appearing in refereed journals
McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584.
A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness
A - Papers appearing in refereed journals
Hen-Avivi, S., Savin, O., Racovita, R. C., Lee, W-S., Adamski, N. M., Malitsky, S., Almekias-Siegl, E., Levy, M., Vautrin, S., Berges, H., Friedlander, G., Kartvelishvily, E., Ben-Zvi, G., Alkan, N., Uauy, C., Kanyuka, K., Jetter, R., Distelfeld, A. and Aharoni, A. 2016. A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness. The Plant Cell. 28 (6), pp. 1440-1460.
A role for BAK1 in the Zymoseptoria tritici-wheat interaction
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.
Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease
A - Papers appearing in refereed journals
Bresso, E., Leroux, V., Urban, M., Hammond-Kosack, K. E., Maigret, B. and Martins, N. F. 2016. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease. Journal Of Molecular Modeling. 22, p. 163.
Publishing FAIR data: an exemplar methodology utilizing PHI-base
A - Papers appearing in refereed journals
Rodriguez-Iglesias, A., Rodriguez-Gonzales, A., Irvine, A. G., Sesma, A., Urban, M., Hammond-Kosack, K. E. and Wilkinson, M. D. 2016. Publishing FAIR data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science. 7, p. 641.
Detection and quantification of airborne inoculum of Blumeria graminis f. sp. tritici using quantitative PCR
A - Papers appearing in refereed journals
Cao, X., Yao, D., Zhou, Y., West, J. S., Xu, X., Luo, Y., Ding, K., Fan, J. and Duan, X. 2016. Detection and quantification of airborne inoculum of Blumeria graminis f. sp. tritici using quantitative PCR. European Journal of Plant Pathology. 146, pp. 225-229.
Annual Project Report March 2015 to Feb 2016. Report to AHDB on Project RD-2140022105: Arable Crop Diease Alert System
D1 - Technical reports: non-confidential
West, J. S., Canning, G. and Wili, S. 2016. Annual Project Report March 2015 to Feb 2016. Report to AHDB on Project RD-2140022105: Arable Crop Diease Alert System.
Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease
C2 - Non-edited contributions to conferences
Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.
Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici
A - Papers appearing in refereed journals
Kettles, G. J. and Kanyuka, K. 2016. Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici. Frontiers in Plant Science. 7, p. 508.
Potential impact of climate change on fungal distributions: analysis of 2 years of contrasting weather in the UK
A - Papers appearing in refereed journals
Sadys, M., Kennedy, R. and West, J. S. 2016. Potential impact of climate change on fungal distributions: analysis of 2 years of contrasting weather in the UK. Aerobiologia. 32, pp. 127-137.
PhytoPath: an integrative resource for plant pathogen genomics
A - Papers appearing in refereed journals
Pedro, H., Maheswari, U., Urban, M., Irvine, A. G., Cuzick, A., Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, K. E. and Kersey, P. J. 2016. PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Research. 44 (D1), pp. D688-D693.
The trans-kingdom identification of negative regulators of pathogen hypervirulence
A - Papers appearing in refereed journals
Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2016. The trans-kingdom identification of negative regulators of pathogen hypervirulence. FEMS Microbiology Reviews. 40 (1), pp. 19-40.
Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops
C1 - Edited contributions to conferences/learned societies
Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90
Exploring the susceptibility of cereal species to Phialophora fungi
C1 - Edited contributions to conferences/learned societies
Osborne, S., Mcmillan, V. E., Whalley, W. R., Foulkes, J. and Hammond-Kosack, K. E. 2015. Exploring the susceptibility of cereal species to Phialophora fungi. Abstracts Molecular Biology of Plant Pathogens Conference (MBPP), University of West England, Bristol, 8-9 April, 2015. pp. 56
Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant
C2 - Non-edited contributions to conferences
Jedryczka, M., Kaczmarek, J., Dawidziuk, A., Aubertot, J. N., Latunde-Dada, A. O., West, J. S., Sadys, M., Kennedy, R., Gilski, M., Grinn-Gofron, A. and Strzelczak, A. 2015. Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant. Abstracts 14th International Rapeseed Congress, Saskatoon, 5-9 July 2015 . pp. 98
Toxic effectors from the wheat pathogen Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2015. Toxic effectors from the wheat pathogen Zymoseptoria tritici. Abstracts MonoGram 2015, Harpenden, 29 April-1 May 2015 .
Candidate necrotrophic effectors from the wheat pathogen Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2015. Candidate necrotrophic effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 28th Fungal Genetics Conference, Pacific Grove, 17-22 March 2015 . pp. 134
Plant fungal resistance gene. WO2017103582 (A1)
H1 - Patents granted
Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).
Responses to plant pathogens
B - Book chapters etc edited externally
Hammond-Kosack, K. E. and Jones, J. D. G. 2015. Responses to plant pathogens. in: Jones, R. L., Buchanan, B. B. and Gruissem, W. (ed.) Biochemistry and molecular biology of plants, 2nd ed John Wiley & Sons Chichester, West Sussex. pp. 984-1050
Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars
G - Articles in popular magazines and other technical publications
Baggs, E., Moughan, J., Mcmillan, V. E. and Hammond-Kosack, K. E. 2015. Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars. BSPP News. 78, pp. 34-35.
Secreted biomolecules in fungal plant pathogenesis
B - Book chapters etc edited externally
Brown, N. A. and Hammond-Kosack, K. E. 2015. Secreted biomolecules in fungal plant pathogenesis. in: Gupta, V. K., Sreenivasaprasad, S. and Mach, R. L. (ed.) Fungal biomolecules: sources, applications and recent developments John Wiley & Sons Chichester, West Sussex. pp. 263-310
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778.
Host to a stranger: Arabidopsis and Fusarium ear blight
A - Papers appearing in refereed journals
Brewer, H. C. and Hammond-Kosack, K. E. 2015. Host to a stranger: Arabidopsis and Fusarium ear blight. Trends in Plant Science. 20, pp. 651-663.
Impact of climate change on diseases in sustainable arable crop systems: CLIMDIS (HGCA Project Report No. 539)
D1 - Technical reports: non-confidential
West, J. S., Fitt, B. D. L., Townsend, J. A., Stevens, M., Edwards, S. G., Turner, J. A., Ellerton, D., Flind, A., King, J., Hasler, J., Werner, C. P., Tapsell, C., Holdgate, S., Summers, R., Angus, B. and Edmonds, J. 2015. Impact of climate change on diseases in sustainable arable crop systems: CLIMDIS (HGCA Project Report No. 539). Home Grown Cereals Authority (HGCA) Stoneleigh.
G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana
A - Papers appearing in refereed journals
Chakroborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. and Raghuram, N. 2015. G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana. Plant Molecular Biology. 89, pp. 559-576.
Scientific opinion on hot water treatment of Vitis sp. for Xylella fastidiosa
D1 - Technical reports: non-confidential
EFSA Panel on Plant Health (PLH), Parnell, S. and West, J. S. 2015. Scientific opinion on hot water treatment of Vitis sp. for Xylella fastidiosa. European Food Safety Authority,. doi:10.2903/j.efsa.2015.4225
Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence
A - Papers appearing in refereed journals
Urban, M., Irvine, A. G., Cuzick, A. and Hammond-Kosack, K. E. 2015. Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. Frontiers in Plant Science. 6, p. 605.
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum
A - Papers appearing in refereed journals
King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544.
Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence
A - Papers appearing in refereed journals
Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84.
An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea
A - Papers appearing in refereed journals
Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534.
Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions
A - Papers appearing in refereed journals
Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261.
Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance
A - Papers appearing in refereed journals
Lee, W-S., Rudd, J. J. and Kanyuka, K. 2015. Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance. Fungal Genetics and Biology. 79 (June), pp. 84-88.
Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat
A - Papers appearing in refereed journals
Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions - MPMI. 28, pp. 590-604.
Differences in MAT gene distribution and expression between Rhynchosporium species on grasses
A - Papers appearing in refereed journals
King, K. M., West, J. S., Fitt, B. D. L. and Dyer, P. S. 2015. Differences in MAT gene distribution and expression between Rhynchosporium species on grasses. Plant Pathology. 64 (2), pp. 344-354.
Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance
A - Papers appearing in refereed journals
Cao, X., Luo, Y., Zhou, Y., Fan, J., Xu, X., West, J. S., Duan, X. and Cheng, D. 2015. Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance. PLOS ONE. 10, p. e0121462.
In planta transient expression systems for monocots
B - Book chapters etc edited externally
Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432
Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody
A - Papers appearing in refereed journals
Jobsri, J., Allen, A., Rajagopal, D., Shipton, M., Kanyuka, K., Lomonossoff, G. P., Ottensmeier, C., Diebold, S. S., Stevenson, F. K. and Savelyeva, N. 2015. Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody. PLOS ONE. 10, p. e0118096.
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition
A - Papers appearing in refereed journals
Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185.
Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation
A - Papers appearing in refereed journals
Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. A. and Raghuram, N. 2015. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLOS ONE. 10, p. e0117819.
Innovations in air sampling to detect plant pathogens
A - Papers appearing in refereed journals
West, J. S. and Kimber, R. B. E. 2015. Innovations in air sampling to detect plant pathogens. Annals of Applied Biology. 166 (1), pp. 4-17.
Optical sensing of crop diseases for phenotyping and early detection
C2 - Non-edited contributions to conferences
West, J. S. 2015. Optical sensing of crop diseases for phenotyping and early detection. Abstracts Workshop on Advances and Challenges of Phenotyping Biotic and Abiotic Stress: from Lab to Field, Sheffield, 12-13 January 2015 .
Airborne sampling and optical sensing methods for macro scale mapping
C2 - Non-edited contributions to conferences
West, J. S., Canning, G., Heard, S., Fraaije, B. A., Bonants, P., Van Gent-Pelzer, M., Nicolaisen, M., Justesen, A. F. and Wili, S. G. 2015. Airborne sampling and optical sensing methods for macro scale mapping. Abstracts IPM Innovation in Europe, Poznan, 14-16 January 2015 . pp. 57
The Pathogen-Host Interactions database (PHI-base): additions and future developments
A - Papers appearing in refereed journals
Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H. and Hammond-Kosack, K. E. 2015. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Research. 43, pp. D645-D655.
Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici
A - Papers appearing in refereed journals
Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605.
Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2014. Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Rhodes, 6-10 July 2014 . pp. P310
Air Sampling Device. GB2496995 (B)
H1 - Patents granted
Wili, S. and West, J. S. 2014. Air Sampling Device. GB2496995 (B).
Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit (EFSA Supporting Publication 2014:EN-560)
D1 - Technical reports: non-confidential
Perryman, S. A. M. and West, J. S. 2014. Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit (EFSA Supporting Publication 2014:EN-560). European Food Safety Authority, Parma.
Monitoring air and rain for plant pathogens
C2 - Non-edited contributions to conferences
West, J. S. 2014. Monitoring air and rain for plant pathogens. Abstracts EFSA/EPPO Joint Workshop on Data Collection and Information Sharing in Plant Health, Parma, 1-3 April 2014 . pp. 12
Precision disease detection to enhance crop protection decisions in a changing climate
C1 - Edited contributions to conferences/learned societies
West, J. S. 2014. Precision disease detection to enhance crop protection decisions in a changing climate. Agronomic Decision Making in an Uncertain Climate. Aspects of Applied Biology 125 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 95-98
Healthy air - healthy plants - healthy people: methods for detection of air-borne pathogens and allergens
C2 - Non-edited contributions to conferences
Jedryczka, M., West, J. S., Kaczmarek, J., Latunde-Dada, A. O., Karolewski, Z. and Fitt, B. D. L. 2014. Healthy air - healthy plants - healthy people: methods for detection of air-borne pathogens and allergens. Abstracts 11th Conference of the European Foundation for Plant Pathology, Krakow, 8-13 September 2014 . pp. 101
New developments in identification and quantification of airborne inoculum
B - Book chapters etc edited externally
Heard, S. and West, J. S. 2014. New developments in identification and quantification of airborne inoculum. in: Gullino, M. L. and Bonants, P. J. M. (ed.) Detection and diagnostics of plant pathogens (Plant Pathology in the 21st Century 5) Springer, Dordrecht. pp. 3-19
Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum
A - Papers appearing in refereed journals
Brewer, H. C., Hammond-Kosack, K. E. and Hawkins, N. D. 2014. Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biology. 14, p. 317.
Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703
Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit
A - Papers appearing in refereed journals
Perryman, S. A. M., Clark, S. J. and West, J. S. 2014. Splash dispersal of Phyllosticta citricarpa conidia from infected citrus fruit. Scientific Reports. 4, p. 6568.
Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae
A - Papers appearing in refereed journals
Carter, H. E., Fraaije, B. A., West, J. S., Kelly, S. L., Mehl, A., Shaw, M. W. and Cools, H. J. 2014. Alterations in the predicted regulatory and coding regions of the sterol 14alpha-demethylase gene (CYP51) confer decreased azole sensitivity in the oilseed rape pathogen Pyrenopeziza brassicae. Molecular Plant Pathology. 15 (5), pp. 513-522.
A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences
C2 - Non-edited contributions to conferences
Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069
Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction
C2 - Non-edited contributions to conferences
Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .
Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance
C2 - Non-edited contributions to conferences
Gamble, L., Lynott, J., Berepiki, A., Kanyuka, K., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A. C., Birch, P. R. J. and Avrova, A. 2014. Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P332
Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat
C2 - Non-edited contributions to conferences
Cambon, F., Lasserre-Zuber, P., Langin, T., Kanyuka, K. and Saintenac, C. 2014. Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat. Abstracts Mycosphaerella Research Community Meeting, Exeter, 11-12 September 2014 .
Rhynchosporium commune effector compliment and their role in pathogenicity on barley
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335
Rhynchosporium commune effectors identification and exploitation
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .
Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .
From Rhynchosporium commune genome sequence to barley resistance
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .
Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species
A - Papers appearing in refereed journals
Mcmillan, V. E., Gutteridge, R. J. and Hammond-Kosack, K. E. 2014. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biology. 14, p. 212.
Biotechnology: plant protection
B - Book chapters etc edited externally
Hammond-Kosack, K. E. 2014. Biotechnology: plant protection. in: Vanalfen, N. K. (ed.) Encyclopedia of agriculture and food systems, Vol. 2 Elsevier, San Diego. pp. 134-152
Plant pathogen dispersal
B - Book chapters etc edited externally
West, J. S. 2014. Plant pathogen dispersal. in: eLS John Wiley & Sons Chichester, West Sussex.
The role of chitin signalling in defence against Zymoseptoria tritici in wheat
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .
WGIN Stakeholders' Newsletter [April 2014]
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E., Hawkesford, M. J., Mcmillan, V. E., Hammond-Kosack, M., Shepherd, G., Griffiths, S. and Foulkes, J. 2014. WGIN Stakeholders' Newsletter [April 2014]. WGIN Stakeholders' Newsletter. April.
Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .
Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV)
A - Papers appearing in refereed journals
Perovic, D., Kramer, I., Habekuss, A., Perner, K., Pickering, R., Proeseler, G., Kanyuka, K. and Ordon, F. 2014. Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV). Theoretical and Applied Genetics. 127, pp. 1061-1071.
Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat
A - Papers appearing in refereed journals
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions - MPMI. 27 (3), pp. 236-243.
Virus-induced gene silencing as a useful tool for functional genomics in wheat
C2 - Non-edited contributions to conferences
Kanyuka, K. 2014. Virus-induced gene silencing as a useful tool for functional genomics in wheat. International Conference on Translational Cereal Genomics, Vienna, 9-11 February 2014 . pp. 22
Detection and quantification of airborne ascospores of Sclerotinia sclerotiorum by quantitative-PCR
C1 - Edited contributions to conferences/learned societies
Rogers, S. L., Atkins, S. D., Latunde-Dada, A. O., Stonard, J. F. and West, J. S. 2013. Detection and quantification of airborne ascospores of Sclerotinia sclerotiorum by quantitative-PCR. IOBC.
New developments in identification and quantification of airborne inoculum
C2 - Non-edited contributions to conferences
West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.
Detecting airborne inoculum to forecast oilseed rape diseases
C1 - Edited contributions to conferences/learned societies
West, J. S., Atkins, S. D., Mccartney, A., Evans, N. and Fitt, B. D. L. 2013. Detecting airborne inoculum to forecast oilseed rape diseases. IOBC.
Activity of enzymes associated with asparagine synthesis and breakdown in wheat under biotic and abiotic stress conditions
C1 - Edited contributions to conferences/learned societies
Kudiyarova, Z. S., Muttucumaru, N., West, J. S. and Halford, N. G. 2013. Activity of enzymes associated with asparagine synthesis and breakdown in wheat under biotic and abiotic stress conditions. Acrylamide, furans and other food-borne contaminants, from plant science to food chemistry. Aspects of Applied Biology 116 . pp. 119-124
Arable crop disease control, climate change and food security
C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J. and West, J. S. 2013. Arable crop disease control, climate change and food security.
R gene-mediated resistance in Brassica napus that limits asexual sporulation but allows sexual sporulation by Pyrenopeziza brassicae (light leaf spot)
C2 - Non-edited contributions to conferences
Boys, E. F., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2013. R gene-mediated resistance in Brassica napus that limits asexual sporulation but allows sexual sporulation by Pyrenopeziza brassicae (light leaf spot).
Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79
BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta
C2 - Non-edited contributions to conferences
Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .
Identification and characterisation of effectors from barley pathogen Rhynchosporium commune
C2 - Non-edited contributions to conferences
Griffe, L., Gamble, L., Lynott, J., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Identification and characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 4th Dissemination Event, Cambridge, 15-16 May 2013 .
Characterisation of effectors from barley pathogen Rhynchosporium commune
C2 - Non-edited contributions to conferences
Griffe, L., Gamble, L., Berepiki, A., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .
Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2013. Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola. Abstracts 5th Congress of European Microbiologists (FEMS), Leipzig, 21-25 July 2013 .
Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune
C2 - Non-edited contributions to conferences
Avrova, A., Berepiki, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .
Potential impact of a changing climate on Phoma stem canker and light leaf spot of oilseed rape in the UK
C1 - Edited contributions to conferences/learned societies
Evans, N., Fitt, B. D. L., Gladders, P., Huang, Y-J. and West, J. S. 2013. Potential impact of a changing climate on Phoma stem canker and light leaf spot of oilseed rape in the UK. IOBC.
Automated detection of airborne plant pathogen spores
C2 - Non-edited contributions to conferences
West, J. S. 2013. Automated detection of airborne plant pathogen spores. Abstracts Ciclo de Conferencias: Panorama Actual de las Ciencias Atmosfericas, Mexico City, 29 July - 9 August 2013 .
Precision pathology: the technological options
C2 - Non-edited contributions to conferences
West, J. S. 2013. Precision pathology: the technological options. Abstracts Visions of Plant Disease Management in 2050: Metropolis, Arcadia or Dystopia? BSPP Presidential Meeting 2013, Birmingham, 17-18 December 2013 .
DNA analysis for plant pathogen detection in air samples
C2 - Non-edited contributions to conferences
West, J. S., Canning, G., Bonants, P., Van Gent-Pelzer, M., Nicolaisen, M. and Justesen, A. 2013. DNA analysis for plant pathogen detection in air samples. Abstracts Future IPM in Europe, Riva del Garda, 19-21 March 2013 .
Comparative transcriptome analysis of single and double mutants of GPA1 and GCR1 reveals their combinatorial genomewide roles in G-protein signaling in Arabidopsis thaliana
C2 - Non-edited contributions to conferences
Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Pillai, B., Choudhury, D., Hooley, R. and Raghuram, N. 2013. Comparative transcriptome analysis of single and double mutants of GPA1 and GCR1 reveals their combinatorial genomewide roles in G-protein signaling in Arabidopsis thaliana. Abstracts Indraprastha International Conference on Biotechnology, New Delhi, 22-25 October 2013 . pp. 155-156
Biocontrol of stem-base infection by mycotoxin-producing Fusarium species by Fusarium equiseti and other fungal antagonists
C1 - Edited contributions to conferences/learned societies
Perryman, S. A. M. and West, J. S. 2013. Biocontrol of stem-base infection by mycotoxin-producing Fusarium species by Fusarium equiseti and other fungal antagonists. Postitive plant microbial interactions: their role in maintaining sustainable and natural ecosystems. Aspects of Applied Biology 120 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 15-21
Identification and characterisation of effectors from barley pathogen Rhynchosporium commune
C2 - Non-edited contributions to conferences
Griffe, L., Gamble, L., Lynott, J., Munsterkotter, M., Knogge, W., Newton, A., Hein, I., Birch, P., Kanyuka, K. and Avrova, A. 2013. Identification and characterisation of effectors from barley pathogen Rhynchosporium commune. Abstracts Effectome 2013, Montpelier, 25-27 September 2013 .
Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex
A - Papers appearing in refereed journals
Fernandez-Ortuno, D., Waalwijk, C., Van Der Lee, T., Fan, J., Atkins, S., West, J. S. and Fraaije, B. A. 2013. Simultaneous real-time PCR detection of Fusarium asiaticum, F. ussurianum and F. vorosii, representing the Asian clade of the F. graminearum species complex. International Journal of Food MicroBiology. 166, pp. 148-154.
SYield - a risk alert system for Sclerotinia in oilseed rape
C2 - Non-edited contributions to conferences
West, J. S., Wili, S., Canning, G., Heard, S., Weiss, S., Jackman, P., Coldrick, Z., Mortimer, A., Drago, G., Johnson, G., Grieve, B., Norman, K., Elsom, K., Kozan, K., Easton, C., Jobling, G., Magri, B., Armstrong, S., Perfect, S., Scuffell, D. and Singh, S. 2013. SYield - a risk alert system for Sclerotinia in oilseed rape. Abstracts Bi-annual Meeting IOBC-ICOC Working Group on Integrated Control in Oilseed Crops, Belvaux, 8-10 October 2013 . pp. 49
Final report: Contract no NP/EFSA/PLH/2013/01-CTI
D1 - Technical reports: non-confidential
West, J. S. and Perryman, S. A. M. 2013. Final report: Contract no NP/EFSA/PLH/2013/01-CTI.
Evolutionary relationships between Rhynchosporium lolii sp. nov. and other Rhynchosporium species on grasses
A - Papers appearing in refereed journals
King, K. M., West, J. S., Brunner, P. C., Dyer, P. S. and Fitt, B. D. L. 2013. Evolutionary relationships between Rhynchosporium lolii sp. nov. and other Rhynchosporium species on grasses. PLOS ONE. 8, p. e72536.
Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection
C2 - Non-edited contributions to conferences
Kanyuka, K., Lee, W-S., Hammond-Kosack, K. E. and Rudd, J. J. 2013. Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection. Abstracts 12th International Wheat Genetics Symposium (IWGS), Yokohama, 8-14 September 2013 .
Sustainable agriculture and greenhouse gas emissions
B - Book chapters etc edited externally
West, J. S. 2013. Sustainable agriculture and greenhouse gas emissions. in: Korres, N. E., O'Kiely, P., Benzie, J. A. H. and West, J. S. (ed.) Bioenergy production by anaerobic digestion Routledge. pp. 3-7
Bioenergy production by anaerobic digestion: using agricultural biomass and organic wastes
E - Books edited/written by staff member, alone/with others
Korres, N. E., O'Kiely, P., Benzie, J. A. H. and West, J. S. 2013. Bioenergy production by anaerobic digestion: using agricultural biomass and organic wastes. Routledge Abingdon.
Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates
A - Papers appearing in refereed journals
Carter, H. E., Cools, H. J., West, J. S., Shaw, M. W. and Fraaije, B. A. 2013. Detection and molecular characterisation of Pyrenopeziza brassicae isolates resistant to methyl benzimidazole carbamates. Pest Management Science. 69 (9), pp. 1040-1048.
Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts 1st Annual Meeting COST Action FA 1208 Pathogen-informed Strategies for Sustainable Broad-Spectrum Crop Resistance, Birnam, 9-11 October 2013 .
Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases
C2 - Non-edited contributions to conferences
Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.
Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .
Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum
A - Papers appearing in refereed journals
Lawler, K., Hammond-Kosack, K. E., Brazma, A. and Coulson, R. M. R. 2013. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC Systems Biology. 7, p. 52.
BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta
C2 - Non-edited contributions to conferences
Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .
Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue
B - Book chapters etc edited externally
Urban, M. and Hammond-Kosack, K. E. 2013. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. in: Brown, D. W. and Proctor, R. H. (ed.) Fusarium: genomics, molecular and cellular biology Caister Academic Press, Norwich, Norfolk. pp. 43-79
Future IPM in Europe - the PURE project's first stakeholder congress
G - Articles in popular magazines and other technical publications
West, J. S. 2013. Future IPM in Europe - the PURE project's first stakeholder congress. Outlooks on Pest Management. 24(3), p. 128.
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum
A - Papers appearing in refereed journals
Lysenko, A., Urban, M., Bennett, L., Tsoka, S., Janowska-Sejda, E., Rawlings, C. J., Hammond-Kosack, K. E. and Saqi, M. 2013. Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PLOS ONE. 8, p. e67926.
Food security: a systems approach. White paper presented at EU Science: Global Challenges and Global Collaboration, Brussels, 6 March 2013
G - Articles in popular magazines and other technical publications
Mcmurray, G., Arruda, C., Britton, D., Eidenberger, T., Evans, S., Gibney, M., Mccarthy, U., Moran, L., Opara, L., Saner, S. and West, J. S. 2013. Food security: a systems approach. White paper presented at EU Science: Global Challenges and Global Collaboration, Brussels, 6 March 2013.
Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes
C2 - Non-edited contributions to conferences
Urban, M., Antoniw, J. F., Martins, N., Lysenko, A., Grzebyta, J., Janowska-Sedja, E., Saqi, M. and Hammond-Kosack, K. E. 2013. Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 177
Exploring the metabolome of cereal infecting fusaria
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Lowe, R. G. T., Canning, G., Urban, M., Beale, M. H. and Ward, J. L. 2013. Exploring the metabolome of cereal infecting fusaria. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 21
Characterisation of stuA homologue in Fusarium culmorum
C2 - Non-edited contributions to conferences
Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hammond-Kosack, K. E., Hoffmann, L., Beyer, M. and Migheli, Q. 2013. Characterisation of stuA homologue in Fusarium culmorum. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 185
FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner
A - Papers appearing in refereed journals
Pasquali, M., Spanu, F., Scherm, B., Balmas, V., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2013. FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner. PLOS ONE. 8, p. e57429 (14pp).
One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use
A - Papers appearing in refereed journals
Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., Freeman, S., Gagkaeva, T., Glenn, A. E., Gordon, T. R., Gregory, N. F. and Hammond-Kosack, K. E. 2013. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. 103 (5), pp. 400-408.
Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function
A - Papers appearing in refereed journals
Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytologist. 198 (3), pp. 821-835.
Development of the Miniature Virtual Impactor - MVI - for long-term and automated air sampling to detect plant pathogen spores
C2 - Non-edited contributions to conferences
West, J. S., Canning, G., Heard, S. and Wili, S. G. 2013. Development of the Miniature Virtual Impactor - MVI - for long-term and automated air sampling to detect plant pathogen spores. Abstracts EU PURE Project Conference on Future IPM in Europe, Riva del Garda, 19-21 March 2013 .
Exploitation of genomics in fungicide research: current status and future perspectives
A - Papers appearing in refereed journals
Cools, H. J. and Hammond-Kosack, K. E. 2013. Exploitation of genomics in fungicide research: current status and future perspectives. Molecular Plant Pathology. 14 (2), pp. 197-210.
Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum
B - Book chapters etc edited externally
Bennett, L., Lysenko, A., Papageorgiou, L. G., Urban, M., Hammond-Kosack, K. E., Rawlings, C. J., Saqi, M. and Tsoka, S. 2012. Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum. in: Gilbert, D. and Heiner, M. (ed.) Computational Methods in Systems Biology Springer-Verlag Berlin Heidelberg.
Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae
C2 - Non-edited contributions to conferences
Carter, H. E., Cools, H. J., West, J. S., Shaw, M., Mehl, A. and Fraaije, B. A. 2012. Reduced azole sensitivity in the oilseed rape pathogen Pyrenopziza brassicae. American Phytopathological Society (APS).
Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species
C2 - Non-edited contributions to conferences
Lucas, J. A., Amaral, A., Hammond-Kosack, K. E. and Rudd, J. J. 2012. Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species. Abstracts 4th Brazilian Congress of Biotechnology, Guaruja, 28 October - 1 November 2012 . pp. 30
New air sampler developed to study plant pathogen spores
G - Articles in popular magazines and other technical publications
Wili, S. G. and West, J. S. 2012. New air sampler developed to study plant pathogen spores. PURE Newsletter.
Aerobiology and air sampling in plant pathology
C1 - Edited contributions to conferences/learned societies
West, J. S. 2012. Aerobiology and air sampling in plant pathology.
Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot
C2 - Non-edited contributions to conferences
Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2012. Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 98
Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group
G - Articles in popular magazines and other technical publications
Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2012. Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group. Nature Reviews Drug Discovery. 10, p. 661.
Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum
C2 - Non-edited contributions to conferences
Martins, N. F. and Hammond-Kosack, K. E. 2012. Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum. Abstracts 1st Meeting EMBRAPA Researchers and Engineers in Europe, Montpellier, 18 October 2012 .
Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein
A - Papers appearing in refereed journals
Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2012. Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein. Plant Physiology. 160, pp. 582-590.
Phytopath - A new bioinformatics resource for plant pathogens
C2 - Non-edited contributions to conferences
Pedro, H., Grzebyta, J., Urban, M., Saqi, M., Kerhornou, A., Maheswari, U., Kersey, P. and Hammond-Kosack, K. E. 2012. Phytopath - A new bioinformatics resource for plant pathogens. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 138
Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola
A - Papers appearing in refereed journals
Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp).
A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola. Abstracts IS-MPMI 2012 15th International Congress, Kyoto, 29 July - 2 August 2012 . pp. 104
Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Lee, W-S., Marshall, R., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2012. Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola. Abstracts Plant Biology Congress, Freiburg, 29 July-3 August 2012 . pp. 709
Phytopath: new pathogen resource launched
G - Articles in popular magazines and other technical publications
Kersey, P., Pedro, H., Maheswari, U., Hammond-Kosack, K. E., Urban, M., Saqi, M. and Grzebyta, J. 2012. Phytopath: new pathogen resource launched. GARNish Newsletter. 17, p. 8.
Effects of climate change on sugar beet and arable crop diseases in the UK
G - Articles in popular magazines and other technical publications
West, J. S. and Stevens, M. 2012. Effects of climate change on sugar beet and arable crop diseases in the UK. British Sugar Beet Review. 80(1), pp. 24-27.
The role of chitin signalling in the wheat - M. graminicola interaction
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Rank Prize Funds Mini-Symposium on New Horizons in Plant-Pathogen Interactions, Grasmere, 30 April-3 May 2012 .
Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes
C2 - Non-edited contributions to conferences
Oliver, R. P., Williams, A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes. Abstracts Dothideomycetes Satellite Meeting, Marburg, 3 April 2012 .
The role of chitin signalling in the wheat - M. graminicola interaction
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Molecular Biology of Plant Pathogens, Reading, 16-17 April 2012 .
Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Brown, N. A., Urban, M. and Antoniw, J. F. 2012. Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 74
Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2012. Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 233
The top 10 fungal pathogens in molecular plant pathology
A - Papers appearing in refereed journals
Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G. D. 2012. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13 (4), pp. 414-430.
Effects of R gene-mediated resistance in Brassica napus (oilseed rape) on asexual and sexual sporulation of Pyrenopeziza brassicae (light leaf spot)
A - Papers appearing in refereed journals
Boys, E. F., Roques, S. E., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2012. Effects of R gene-mediated resistance in Brassica napus (oilseed rape) on asexual and sexual sporulation of Pyrenopeziza brassicae (light leaf spot). Plant Pathology. 61 (3), pp. 543-554.
Comparative biology of different plant pathogens to estimate effects of climate change on crop diseases in Europe
A - Papers appearing in refereed journals
West, J. S., Townsend, J. A., Stevens, M. and Fitt, B. D. L. 2012. Comparative biology of different plant pathogens to estimate effects of climate change on crop diseases in Europe. European Journal of Plant Pathology. 133, pp. 315-331.
The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum
A - Papers appearing in refereed journals
Merhej, J., Urban, M., Dufresne, M., Hammond-Kosack, K. E., Richard-Forget, F. and Barreau, C. 2012. The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Molecular Plant Pathology. 13 (4), pp. 363-374.
A comparison of GHG emissions from UK field crop production under selected arable systems with reference to disease control
A - Papers appearing in refereed journals
Carlton, R. R., West, J. S., Smith, P. and Fitt, B. D. L. 2012. A comparison of GHG emissions from UK field crop production under selected arable systems with reference to disease control. European Journal of Plant Pathology. 133, pp. 333-351.
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis
A - Papers appearing in refereed journals
Brown, N. A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLOS ONE. 7, p. e33731 (14pp).
Confidential report to Syngenta, January 2012
D1 - Technical reports: non-confidential
Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2012. Confidential report to Syngenta, January 2012.
Impacts of changing climate and agronomic factors on fusarium ear blight of wheat in the UK
A - Papers appearing in refereed journals
West, J. S., Holdgate, S., Townsend, J. A., Edwards, S. G., Jennings, P. and Fitt, B. D. L. 2012. Impacts of changing climate and agronomic factors on fusarium ear blight of wheat in the UK. Fungal Ecology. 5 (1), pp. 53-61.
The induction of mycotoxins by trichothecene producing Fusarium species
B - Book chapters etc edited externally
Lowe, R., Jubault, M., Canning, G., Urban, M. and Hammond-Kosack, K. E. 2012. The induction of mycotoxins by trichothecene producing Fusarium species. in: Thomma, B. P. H. J. and Bolton, M. D. (ed.) Plant fungal pathogens: methods and protocols (Methods in Molecular Biology, Vol 835) Springer, Berlin. pp. 439-455
Temporal and spatial transgene expression using a heat-shock promoter in transgenic wheat
C1 - Edited contributions to conferences/learned societies
Freeman, J., Sparks, C. A., West, J. S., Shewry, P. R. and Jones, H. D. 2011. Temporal and spatial transgene expression using a heat-shock promoter in transgenic wheat. GM Crops: from Basic Research to Application. Aspects of Applied Biology 110 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 85-91
Both mating types are present in Rhynchosporium commune, R. agropyri and R. secalis populations
C2 - Non-edited contributions to conferences
King, K. M., West, J. S., Stefansson, T. S., Mcdonald, B. A., Knogge, W., Dyer, P. S. and Fitt, B. D. L. 2011. Both mating types are present in Rhynchosporium commune, R. agropyri and R. secalis populations. Abstracts 4th International Workshop on Barley Leaf Blights, Dundee, 27-29 June 2011 .
Development of typical and atypical Rynchosporium lesions on different grass hosts
C1 - Edited contributions to conferences/learned societies
King, K. M., West, J. S., Dyer, P. S. and Fitt, B. D. L. 2011. Development of typical and atypical Rynchosporium lesions on different grass hosts. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 1-6
Virus-induced gene silencing system for functional genomics studies in wheat and related cereals
C2 - Non-edited contributions to conferences
Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14
WGIN Stakeholder's Newsletter [November 2011]
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2011. WGIN Stakeholder's Newsletter [November 2011]. WGIN Stakeholders' Newsletter. November.
Reducing take-all inoculum build-up during a first wheat crop
C2 - Non-edited contributions to conferences
Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).
OmniMapFree: a unified tool to visualise and explore sequenced genomes
A - Papers appearing in refereed journals
Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree: a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp).
Optical sensing of symptoms for early detection of crop disease
C2 - Non-edited contributions to conferences
West, J. S. 2011. Optical sensing of symptoms for early detection of crop disease. Abstracts One Day Workshop on New Technologies for Early Pest and Disease Detection, Marston, 12 October 2011 .
Potential for air sampling for early detection of crop disease
C2 - Non-edited contributions to conferences
West, J. S. 2011. Potential for air sampling for early detection of crop disease. Abstracts One Day Workshop on New Technologies for Early Pest and Disease Detection, Marston, 12 October 2011 .
Climate change and arable crop disease control: mitigation and adaptation
C1 - Edited contributions to conferences/learned societies
Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Madgwick, J. W., Jeger, M. J., Townsend, J. A., Turner, J. A. and West, J. S. 2011. Climate change and arable crop disease control: mitigation and adaptation. Deising, H. B., Lyr, H., Russell, P. E., Kuck, K. H., Gisi, U. and Dehne, H. W. (ed.) Modern Fungicides and Antifungal Compounds VI: Proceedings 16th Reinhardsbrunn Symposium, Friedrichroda, 25-29 April 2010 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 17-26
Characterisation of the Fusarium graminearum-wheat floral interaction
A - Papers appearing in refereed journals
Brown, N. A., Bass, C. G., Baldwin, T. K., Chen, Huaigu, Massot, F., Carion, P. W. C., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2011. Characterisation of the Fusarium graminearum-wheat floral interaction. Journal of Pathogens. 2011, p. 626345.
Minimum information about a bioactive entity (MIABE)
A - Papers appearing in refereed journals
Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2011. Minimum information about a bioactive entity (MIABE). Nature Reviews Drug Discovery. 10, pp. 661-669.
Disease control on UK winter oilseed rape contributes to climate change mitigation
C2 - Non-edited contributions to conferences
Mahmuti, M., West, J. S., Watts, J., Gladders, P., Hughes, D. J. and Fitt, B. D. L. 2011. Disease control on UK winter oilseed rape contributes to climate change mitigation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1330-1333
Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production
A - Papers appearing in refereed journals
Hughes, D. J., West, J. S., Atkins, S. D., Gladders, P., Jeger, M. J. and Fitt, B. D. L. 2011. Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production. Pest Management Science. 67 (9), pp. 1082-1092.
Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape
C2 - Non-edited contributions to conferences
Huang, Y-J., Balesdent, M., Van De Wouw, A., Stonard, J., Evans, N., West, J. S., Rouxel, T. and Fitt, B. D. L. 2011. Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1181-1184
An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations
A - Papers appearing in refereed journals
Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668.
Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape
C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Huang, Y-J., West, J. S. and Gladders, P. 2011. Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1226-1229
Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation
C2 - Non-edited contributions to conferences
Boys, E. F., Roques, S., West, J. S., Werner, C. P., King, G. J., Dyer, P. S., Hughes, D. J. and Fitt, B. D. L. 2011. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 .
The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola)
C2 - Non-edited contributions to conferences
West, J. S. 2011. The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola). Abstracts 2nd Congreso Argentino de Fitopatologia, Mar del Plata, 1-3 June 2011 . pp. 11-13
Corrigendum: Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR
A - Papers appearing in refereed journals
Rogers, S. L., Atkins, S. D. and West, J. S. 2011. Corrigendum: Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR. Plant Pathology. 60 (4), p. 800.
Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola
A - Papers appearing in refereed journals
Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular MicroBiology. 81 (2), pp. 415-433.
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis
A - Papers appearing in refereed journals
Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp).
Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat
A - Papers appearing in refereed journals
Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769.
Infection of the wheat ear by the fungus Fusarium culmorum
C2 - Non-edited contributions to conferences
Van De Meene, A., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2011. Infection of the wheat ear by the fungus Fusarium culmorum. Abstracts Botanical Microscopy Conference, Wageningen, 16-21 April 2011 .
A new approach to reduce the risk of Take-all disease
G - Articles in popular magazines and other technical publications
Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.
Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey
A - Papers appearing in refereed journals
Yilmaz, N. D. K., Lyons, R. L., Smith, M. J. and Kanyuka, K. 2011. Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey. European Journal of Plant Pathology. 130, pp. 59-72.
Erratum: The impact of climate change on disease constraints on production of oilseed rape
A - Papers appearing in refereed journals
Evans, N., Butterworth, M. H., Baierl, A., Semenov, M. A., West, J. S., Barnes, A., Moran, D. and Fitt, B. D. L. 2011. Erratum: The impact of climate change on disease constraints on production of oilseed rape. Food Security. 3 (1), pp. 117-120.
Intelligent multi-sensor system for the detection and treatment of fungal diseases in arable crops
A - Papers appearing in refereed journals
Moshou, D., Bravo, C., Oberti, R., West, J. S., Ramon, H., Vougioukas, S. and Bochtis, D. 2011. Intelligent multi-sensor system for the detection and treatment of fungal diseases in arable crops. Biosystems Engineering. 108, pp. 311-321.
Impacts of climate change on wheat anthesis and fusarium ear blight in the UK
A - Papers appearing in refereed journals
Madgwick, J. W., West, J. S., Wright, R. P., Semenov, M. A., Townsend, J. A., Turner, J. A. and Fitt, B. D. L. 2011. Impacts of climate change on wheat anthesis and fusarium ear blight in the UK. European Journal of Plant Pathology. 130 (1), pp. 117-131.
Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop
A - Papers appearing in refereed journals
Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206.
Arable crop disease control, climate change and food security
C1 - Edited contributions to conferences/learned societies
Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Jeger, M. J., Turner, J. A. and West, J. S. 2011. Arable crop disease control, climate change and food security. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 161-169
The unseen threat of symptomless Fusarium wheat ear infection
C1 - Edited contributions to conferences/learned societies
Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2011. The unseen threat of symptomless Fusarium wheat ear infection. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 143-149
Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment
A - Papers appearing in refereed journals
Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687.
The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves
A - Papers appearing in refereed journals
Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71.
Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71
The unseen threat to UK wheat production from Fusarium ear blight
C2 - Non-edited contributions to conferences
Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. The unseen threat to UK wheat production from Fusarium ear blight. Abstracts CropWorld, London, 1-3 November 2010 .
Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight
C2 - Non-edited contributions to conferences
Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight. Abstracts 9th International Mycological Congress: the Biology of Fungi, Edinburgh, 1-6 August 2010 .
A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp
A - Papers appearing in refereed journals
Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions - MPMI. 23 (12), pp. 1605-1618.
The Fusaria
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2010. The Fusaria.
Detection of fungal diseases optically and pathogen inoculum by air sampling
B - Book chapters etc edited externally
West, J. S., Bravo, C., Oberti, R., Moshou, D., Ramon, H. and McCartney, H. A. 2010. Detection of fungal diseases optically and pathogen inoculum by air sampling. in: Sikora, R. A., Oerke, E-C., Menz, G. and Gerhards, R. (ed.) Precision crop protection - the challenge and use of heterogeneity Springer, Berlin. pp. 135-149
Determining frequencies of avirulent alleles in airborne Leptosphaeria maculans inoculum using quantitative PCR
A - Papers appearing in refereed journals
Van De Wouw, A. P., Stonard, J. F., Howlett, B. J., West, J. S., Fitt, B. D. L. and Atkins, S. D. 2010. Determining frequencies of avirulent alleles in airborne Leptosphaeria maculans inoculum using quantitative PCR. Plant Pathology. 59 (5), pp. 809-818.
The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears
A - Papers appearing in refereed journals
Brown, N. A., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2010. The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biology. 114 (7), pp. 555-571.
A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum
A - Papers appearing in refereed journals
Baldwin, T. K., Gaffoor, I., Antoniw, J. F., Andries, C., Guenther, J., Urban, M., Hallen-Adams, H. E., Pitkin, J., Hammond-Kosack, K. E. and Trail, F. 2010. A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Molecular Plant-Microbe Interactions - MPMI. 23 (8), pp. 1083-1096.
The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .
Climate change and arable crop disease control: mitigation and adaptation
C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Gladders, P., Hughes, D. J., Madgwick, J. W., Jeger, J., Townsend, J. A., Turner, J. A. and West, J. S. 2010. Climate change and arable crop disease control: mitigation and adaptation. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 . pp. 18
The impact of climate change on disease constraints on production of oilseed rape
A - Papers appearing in refereed journals
Evans, N., Butterworth, M. H., Baierl, A., Semenov, M. A., West, J. S., Barnes, A., Moran, D. and Fitt, B. D. L. 2010. The impact of climate change on disease constraints on production of oilseed rape. Food Security. 2 (2), pp. 143-156.
A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation
A - Papers appearing in refereed journals
Baldwin, T. K., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2010. A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Molecular Plant-Microbe Interactions - MPMI. 23 (5), pp. 566-577.
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
A - Papers appearing in refereed journals
Ma, L-J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W-B., Woloshuk, C., Xie, X., Xu, J-R., Antoniw, J. F., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P., Danchin, E. G. J., Diener, A., Gale, L. R. and Hammond-Kosack, K. E. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464, pp. 367-373.
Use of QPCR techniques to predict light leaf spot resistance of oilseed rape varieties
C2 - Non-edited contributions to conferences
Booth, E. J., West, J. S., Fitt, B. D. L., Rodgers, S. L., White, Robin P., Todd, A. D., Latunde-Dada, A. O., Thomas, J. E. and Gladders, P. 2010. Use of QPCR techniques to predict light leaf spot resistance of oilseed rape varieties. Proceedings Dundee Conference on Crop Protection in Northern Britain, Dundee, 23-24 February 2010 . pp. 87-90
Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol)
D1 - Technical reports: non-confidential
Perovic, D., Kanyuka, K. and Ordon, F. 2010. Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol).
Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats
A - Papers appearing in refereed journals
Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32.
Geographic variation in severity of phoma stem canker and Leptosphaeria maculans/L.biglobosa populations on UK winter oilseed rape (Brassica napus)
A - Papers appearing in refereed journals
Stonard, J. F., Latunde-Dada, A. O., Huang, Y-J., West, J. S., Evans, N. and Fitt, B. D. L. 2010. Geographic variation in severity of phoma stem canker and Leptosphaeria maculans/L.biglobosa populations on UK winter oilseed rape (Brassica napus). European Journal of Plant Pathology. 126, pp. 97-109.
North-South divide: contrasting impacts of climate change on crop yields in Scotland and England
A - Papers appearing in refereed journals
Butterworth, M. H., Semenov, M. A., Barnes, A., Moran, D., West, J. S. and Fitt, B. D. L. 2010. North-South divide: contrasting impacts of climate change on crop yields in Scotland and England. Journal of the Royal Society Interface. 7, pp. 123-130.
Controlling crop disease to mitigate climate change
C1 - Edited contributions to conferences/learned societies
West, J. S., Mahmuti, M., Watts, J., Townsend, J. A., Gladders, P. and Fitt, B. D. L. 2009. Controlling crop disease to mitigate climate change. Measuring and Marketing the Environmental Costs and Benefits of Agricultural Practice. Aspects of Applied Biology 95 . pp. 25-31
Pest wars - press paper
C2 - Non-edited contributions to conferences
Lucas, J. A., Field, L. M., Cools, H. J. and Hammond-Kosack, K. E. 2009. Pest wars - press paper. Pest Wars: British Science Festival, Guildford, 8 September 2009 .
Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Freeman, A., Desmouceaux, N., Urban, M. and Cuzick, A. 2009. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 .
Molecular and genetic studies on Fusarium Ear Blight disease of wheat
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .
Determining frequencies of avirulent alleles in airborne inoculum of Leptosphaeria maculans using molecular assays
C2 - Non-edited contributions to conferences
Van De Wouw, A. P., Stonard, J. F., Atkins, S. D., Howlett, B. J., West, J. S. and Fitt, B. D. L. 2009. Determining frequencies of avirulent alleles in airborne inoculum of Leptosphaeria maculans using molecular assays. Proceedings 16th Australian Research Assembly on Brassicas, Ballarat, 14-16 September 2009 . pp. 150-153
North-south divide: contrasting impacts of climate change on crop yields in Scotland and England
C2 - Non-edited contributions to conferences
Butterworth, M. H., Semenov, M. A., Barnes, A., Moran, D., West, J. S. and Fitt, B. D. L. 2009. North-south divide: contrasting impacts of climate change on crop yields in Scotland and England. doi:10.1088/1755-1307/6/7/372051
The importance of weeds in the epidemiology of crop diseases
D1 - Technical reports: non-confidential
West, J. S. 2009. The importance of weeds in the epidemiology of crop diseases.
Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .
A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34
Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18
Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .
Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research
D1 - Technical reports: non-confidential
Hammond-Kosack, K. E., Urban, M., Franklin, J. F. and Taberer, R. 2009. Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research.
Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec
G - Articles in popular magazines and other technical publications
Walton, J. D., Avis, T. J., Alfano, J. R., Gijzen, M., Spanu, P., Hammond-Kosack, K. E. and Sanchez, M. 2009. Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec. Molecular Plant-Microbe Interactions - MPMI. 22 (12), pp. 1479-1483.
DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum
A - Papers appearing in refereed journals
Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp).
Controlling crop disease contributes to both food security and climate change mitigation
A - Papers appearing in refereed journals
Mahmuti, M., West, J. S., Watts, J., Gladders, P. and Fitt, B. D. L. 2009. Controlling crop disease contributes to both food security and climate change mitigation. International Journal of Agricultural Sustainability. 7, pp. 189-202.
High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley
A - Papers appearing in refereed journals
Hofinger, B. J., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics. 119, pp. 851-865.
High resolution melting curve analysis for mutation detection in plants: a case study in barley
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C. G., Baldwin, T., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High resolution melting curve analysis for mutation detection in plants: a case study in barley. Abstracts Monogram Network Workshop, Bristol, 29 April-1 May 2009 . pp. 28
Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola
A - Papers appearing in refereed journals
Motteram, J., Kufner, I., Deller, S., Brunner, F., Hammond-Kosack, K. E., Nurnberger, T. and Rudd, J. J. 2009. Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Molecular Plant-Microbe Interactions - MPMI. 22 (7), pp. 790-799.
Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in bread wheat
A - Papers appearing in refereed journals
Perovic, D., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2009. Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in bread wheat. Molecular Breeding. 23, pp. 641-653.
Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues
A - Papers appearing in refereed journals
Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions - MPMI. 22 (5), pp. 560-574.
Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR
A - Papers appearing in refereed journals
Rogers, S. L., Atkins, S. D. and West, J. S. 2009. Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR. Plant Pathology. 58 (2), pp. 324-331.
Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers
A - Papers appearing in refereed journals
Cuzick, A., Maguire, K. and Hammond-Kosack, K. E. 2009. Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. New Phytologist. 181, pp. 901-912.
Detection of airborne plant pathogens: halting epidemics before they start
G - Articles in popular magazines and other technical publications
West, J. S., Atkins, S. D. and Fitt, B. D. L. 2009. Detection of airborne plant pathogens: halting epidemics before they start. Outlooks on Pest Management. 20, pp. 11-14.
Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in wheat
C2 - Non-edited contributions to conferences
Perovic, D., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2008. Mapping and diagnostic marker development for Soil-borne cereal mosaic virus resistance in wheat. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlingburg, 1-4 September 2008 . pp. 24
Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Gordon Research Conference on Cellular and Molecular Fungal Biology, Holderness, New Hampshire, 29 June - 4 July 2008 .
Genomic analysis of transcriptional regulators of Fusarium graminearum
C2 - Non-edited contributions to conferences
Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Genomic analysis of transcriptional regulators of Fusarium graminearum.
Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains
C2 - Non-edited contributions to conferences
Urban, M., Lowe, R., Allwood, W., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2008. Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains.
The infection biology and transcriptome of wheat pathogen Fusarium graminearum
C2 - Non-edited contributions to conferences
Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .
Pathogenicity determinants of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts BSPP Presidentail Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 11
Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX
C2 - Non-edited contributions to conferences
Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E. 2008. Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX.
Pathogenicity determinants of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, 22 September 2008 .
Pathogenicity determinants of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A. M., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Asbtracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 . pp. PR1.24
Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor
D1 - Technical reports: non-confidential
Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor.
Components of resistance to diseases in winter oilseed rape cultivars: CORDISOR (HGCA Project Report No. 446)
D1 - Technical reports: non-confidential
West, J. S., Fitt, B. D. L., Rogers, S. L., White, Robin P., Todd, A. D., Latunde-Dada, A. O., Gladders, P., Thomas, J., Booth, E., Jennaway, R., Clarke, M., Padbury, N., Bowman, J., Nightingale, M., Werner, P. and Jellis, G. 2008. Components of resistance to diseases in winter oilseed rape cultivars: CORDISOR (HGCA Project Report No. 446). Home Grown Cereals Authority (HGCA) London.
A quantitative-PCR method to detect and quantify airborne ascospores of Sclerotinia sclerotiorum
C1 - Edited contributions to conferences/learned societies
Rogers, S. L., Atkins, S. D., Latunde-Dada, A. O., Stonard, J. F. and West, J. S. 2008. A quantitative-PCR method to detect and quantify airborne ascospores of Sclerotinia sclerotiorum. Applied Aspects of Aerobiology. Asepcts of Applied Biology 89 . pp. 77-79
Preharvest qPCR diagnostics for better management of phoma stem canker and light leaf spot in oilseed rape
C2 - Non-edited contributions to conferences
Latunde-Dada, A. O., Downes, K., Stonard, J. F., Rogers, S. L., West, J. S. and Fitt, B. D. L. 2008. Preharvest qPCR diagnostics for better management of phoma stem canker and light leaf spot in oilseed rape. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 .
How can molecular genetic informtion on plant pathogens benefit disease management?
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E. 2008. How can molecular genetic informtion on plant pathogens benefit disease management? Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 5
Plant resistance signalling hijacked by a necrotrophic fungal pathogen
A - Papers appearing in refereed journals
Hammond-Kosack, K. E. and Rudd, J. J. 2008. Plant resistance signalling hijacked by a necrotrophic fungal pathogen. Plant Signaling & Behavior. 3, pp. 993-995.
Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts BSPP Preseidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 9
The infection biology and transcriptome of wheat pathogen Fusarium graminearum
C2 - Non-edited contributions to conferences
Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 13
Importance of diagnostic markers for the management of soil-borne viral diseases of barley and wheat
C1 - Edited contributions to conferences/learned societies
Perovic, D., Tyrka, M., Forster, J., Devaux, P., Hariri, D., Guilleroux, M., Kanyuka, K., Lyons, R. L., Weyen, J., Feuerhelm, D., Kastirr, U., Sourdille, P., Roder, M. and Ordon, F. 2008. Importance of diagnostic markers for the management of soil-borne viral diseases of barley and wheat. Kobiljski, B. (ed.) Proceedings International Conference on Conventional and Molecular Breeding of Field and Vegetable Crops, Novi Sad, Serbia, 24-27 November 2008 . Institute of Field and Vegetable Crops, Novi Sad. pp. 233-237
Detecting airborne inoculum to forecast arable crop diseases
C1 - Edited contributions to conferences/learned societies
West, J. S., Atkins, S. D., McCartney, H. A. and Fitt, B. D. L. 2008. Detecting airborne inoculum to forecast arable crop diseases. Applied aspects of aerobiology. Aspects of Applied Biology 89 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 1-6
Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease
G - Articles in popular magazines and other technical publications
Jing, H-C., Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease. RRA Newsletter. 27, pp. 3-4.
Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction
A - Papers appearing in refereed journals
Jing, H-C., Lovell, D. J., Gutteridge, R. J., Jenk, D., Kornyukhin, D., Mitrofanova, O., Kema, G. H. J. and Hammond-Kosack, K. E. 2008. Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytologist. 179, pp. 1121-1132.
Take-all and the Wheat Genetic Improvement Network (WGIN)
G - Articles in popular magazines and other technical publications
Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Take-all and the Wheat Genetic Improvement Network (WGIN). RRA Newsletter. 27, pp. 1-2.
Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5
G - Articles in popular magazines and other technical publications
Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5. WGIN Stakeholders' Newsletter. October, pp. 1-4.
Phoma stem canker and light leaf spot on oilseed rape in a changing climate
C1 - Edited contributions to conferences/learned societies
Fitt, B. D. L., Evans, N., Gladders, P., Huang, Y-J. and West, J. S. 2008. Phoma stem canker and light leaf spot on oilseed rape in a changing climate. Effects of Climate Change on Plants: Implications for Agriculture. Aspects of Applied Biology 88 . pp. 143-145
Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection
C2 - Non-edited contributions to conferences
Rudd, J. J., Keon, J. P. R., Motteram, J., Pirie, E. J. and Hammond-Kosack, K. E. 2008. Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .
Investigating resistance mechanisms to furoviruses in wheat and barley
C2 - Non-edited contributions to conferences
Lyons, R., Yilmaz, N. D. K., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Investigating resistance mechanisms to furoviruses in wheat and barley. Abstracts 14th International Congress of Virology, Istanbul, 10-15 August 2008 .
Characterisation of resistance to furoviruses in wheat and barley
C2 - Non-edited contributions to conferences
Lyons, R., Yilmaz, N. D. K., Zlatska, A., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Characterisation of resistance to furoviruses in wheat and barley. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 .
Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29
Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Molecular Biology of Plant Pathogens, Birnam, 17-19 September 2008 .
Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .
PCR to predict risk of airborne disease
A - Papers appearing in refereed journals
West, J. S., Atkins, S. D., Emberlin, J. and Fitt, B. D. L. 2008. PCR to predict risk of airborne disease. Trends in MicroBiology. 16, pp. 380-387.
Data, not only in aerobiology: how normal is the normal distribution?
A - Papers appearing in refereed journals
Limpert, E., Burke, J., Galan, C., Del Mar Trigo, M., West, J. S. and Stahel, W. A. 2008. Data, not only in aerobiology: how normal is the normal distribution? Aerobiologia. 24, pp. 121-124.
GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis
A - Papers appearing in refereed journals
Zhang, Y., Wang, Y., Kanyuka, K., Parry, M. A. J., Powers, S. J. and Halford, N. G. 2008. GCN2-dependent phosphorylation of eukaryotic translation initiation factor 2-alpha in Arabidopsis. Journal of Experimental Botany. 59 (11), pp. 3131-3141.
Quantifying DNA of Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape tissues using QPCR
C2 - Non-edited contributions to conferences
West, J. S., Rogers, S. L., Latunde-Dada, A. O., Pirie, E. J., Stonard, J. F., Huang, Y. J., Atkins, S. D. and Fitt, B. D. L. 2008. Quantifying DNA of Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape tissues using QPCR.
Detection and monitoring of airborne pathogens by optical reflectance and air sampling
C2 - Non-edited contributions to conferences
West, J. S., Rogers, S. L., Atkins, S. D. and Fitt, B. D. L. 2008. Detection and monitoring of airborne pathogens by optical reflectance and air sampling.
Detection and quantification of airborne ascopores of Sclerotinia sclerotiorum by QPCR
C2 - Non-edited contributions to conferences
Rogers, S. L., Atkins, S. D., West, J. S. and Fitt, B. D. L. 2008. Detection and quantification of airborne ascopores of Sclerotinia sclerotiorum by QPCR.
Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley
A - Papers appearing in refereed journals
Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Molecular Plant-Microbe Interactions - MPMI. 21 (9), pp. 1193-1204.
Exploring resistance in wheat to Fusarium ear blight disease
C2 - Non-edited contributions to conferences
Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to Fusarium ear blight disease.
Exploring resistance in wheat to fusarium ear blight disease
C2 - Non-edited contributions to conferences
Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to fusarium ear blight disease. Abstracts 10th International Fusarium Workshop, Alghero, 30 August-2 September 2008 .
Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .
NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers
A - Papers appearing in refereed journals
Cuzick, A., Lee, S., Gezan, S. and Hammond-Kosack, K. E. 2008. NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. Molecular Plant Pathology. 9 (5), pp. 697-704.
Molecular detection of airborne Sclerotinia sclerotiorum spores on Mexican crops
C2 - Non-edited contributions to conferences
Calderon-Ezquerro, C., Guerrero-Parra, H. A., Reyes-Montes, R., Toriello-Najera, C., West, J. S. and Atkins, J. 2008. Molecular detection of airborne Sclerotinia sclerotiorum spores on Mexican crops.
Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (winter oilseed rape)
C2 - Non-edited contributions to conferences
Boys, E. F., West, J. S., Werner, C. P., King, G. J., Dyer, P. S. and Fitt, B. D. L. 2008. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (winter oilseed rape).
Investigating the phenotype of a major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus
C2 - Non-edited contributions to conferences
Boys, E. F., Reilly, K. H., West, J. S., Werner, C. P., Dyer, P. S. and Fitt, B. D. L. 2008. Investigating the phenotype of a major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus.
Phoma stem canker and light leaf spot on oilseed rape in a changing climate
C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Gladders, P., Huang, Y. J. and West, J. S. 2008. Phoma stem canker and light leaf spot on oilseed rape in a changing climate. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 3
Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley
C2 - Non-edited contributions to conferences
Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley. Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .
Exploring eIF4E-based recessive resistance in barley to the bymoviruses Barley yellow mosiac virus (BaYMV) and Barley mild mosaic virus (BaMMV)
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C. G., Baldwin, T. and Kanyuka, K. 2008. Exploring eIF4E-based recessive resistance in barley to the bymoviruses Barley yellow mosiac virus (BaYMV) and Barley mild mosaic virus (BaMMV). Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .
Forecasting oilseed rape diseases from airborne inoculum
C2 - Non-edited contributions to conferences
West, J. S., Atkins, S. D., Rogers, S. L. and Fitt, B. D. L. 2008. Forecasting oilseed rape diseases from airborne inoculum. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 4
Factors affecting canker and light leaf spot severity in oilseed rape
C2 - Non-edited contributions to conferences
West, J. S., Gladders, P., Booth, E., Thomas, J., Jennaway, R., Werner, P., Bowman, J., Nightingale, M., Padbury, N., Clarke, M., Rogers, S. L., Kenyon, D., Atkins, S. D., Boys, E. F., Huang, Y-J., Evans, N., Latunde-Dada, A. O., Li, Q. and Fitt, B. D. L. 2008. Factors affecting canker and light leaf spot severity in oilseed rape. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 . pp. 16
Development of a quantitative-PCR method to understand the epidemiology of sclerotinia stem rot of oilseed rape
C2 - Non-edited contributions to conferences
Rogers, S. L., Atkins, S. D. and West, J. S. 2008. Development of a quantitative-PCR method to understand the epidemiology of sclerotinia stem rot of oilseed rape. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 .
Investigating the phenotype of major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus
C2 - Non-edited contributions to conferences
Boys, E. F., Reilly, K. H., West, J. S., Werner, C. P., Dyer, P. S. and Fitt, B. D. L. 2008. Investigating the phenotype of major gene-mediated resistance to Pyrenopeziza brassicae in Brassica napus. Abstracts BSPP Workshop on Break Crops, Peterborough, 24 June 2008 .
The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola
A - Papers appearing in refereed journals
Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815.
Resistance genes (R genes) in plants
B - Book chapters etc edited externally
Hammond-Kosack, K. E. and Kanyuka, K. 2008. Resistance genes (R genes) in plants. in: Encyclopedia of life sciences John Wiley & Sons Chichester, West Sussex.
Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat
C2 - Non-edited contributions to conferences
Kanyuka, K. and Hammond-Kosack, K. E. 2008. Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat. Abstracts 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008 .
The infection biology of Fusarium graminearum single gene deletion strains
C2 - Non-edited contributions to conferences
Brown, N. A., Baldwin, T., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology of Fusarium graminearum single gene deletion strains. Abstracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 .
PHI-base update: additions to the pathogen-host interaction database
A - Papers appearing in refereed journals
Winnenburg, R., Urban, M., Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, C. J., Hammond-Kosack, K. E. and Kohler, J. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Research. 36, pp. D572-D576.
Climate change set to worsen severity of stem canker
C2 - Non-edited contributions to conferences
West, J. S., Rogers, S., Gladders, P. and Fitt, B. D. L. 2008. Climate change set to worsen severity of stem canker. Abstracts HGCA R&D Conference on Arable Cropping in a Changing Climate, Belton Woods, 23-24 January 2008 . pp. 135
Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue
A - Papers appearing in refereed journals
Cuzick, A., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. New Phytologist. 177 (4), pp. 990-1000.
Dispersal of fungal spores through the air
B - Book chapters etc edited externally
McCartney, H. A. and West, J. S. 2007. Dispersal of fungal spores through the air. in: Samson, R. A. and Dijksterhuis, J. (ed.) Food mycology: a multifaceted approach to fungi and food Boca Raton, Florida CRC Press. pp. 65-81
Molecular genetic and genomic analysis of wheat-pathogen interactions
C2 - Non-edited contributions to conferences
Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13
Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6)
G - Articles in popular magazines and other technical publications
Jing, H-C., Gutteridge, R. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6). WGIN Stakeholders' Newsletter. October, pp. 3-6.
Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6
G - Articles in popular magazines and other technical publications
Jing, H-C. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6. Special WGIN Resources Newsletter. March 2007, pp. 2-6.
Wheat pathogens affecting yield and quality
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E. 2007. Wheat pathogens affecting yield and quality. Abstracts China-UK Wheat Workshop, Beijing, 10-11 December 2007 . pp. 20-21
Can information on the mode of pathogen attack be used to formulate novel crop protection strategies?
C1 - Edited contributions to conferences/learned societies
Rudd, J. J., Jing, H-C. and Hammond-Kosack, K. E. 2007. Can information on the mode of pathogen attack be used to formulate novel crop protection strategies? Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 706-707
Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions
C2 - Non-edited contributions to conferences
Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .
Triticum monococcum as a reference species for wheat genetics and genomics
C2 - Non-edited contributions to conferences
Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .
A re-emerging threat to wheat crops - Black Stem Rust
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2007. A re-emerging threat to wheat crops - Black Stem Rust. RRA Newsletter. Issue 24, p. 2.
Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant
C2 - Non-edited contributions to conferences
Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212
Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis
C2 - Non-edited contributions to conferences
Cuzick, A., Urban, M., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2007. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 52
Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Cuzick, A., Lee, S., Daudi, A., Bass, C. G., Maguire, K. and Urban, M. 2007. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 107-108
Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum
A - Papers appearing in refereed journals
Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764.
DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective
C2 - Non-edited contributions to conferences
Lowe, R., Allwood, J. W., Urban, M., Beale, M. H., Ward, J. L. and Hammond-Kosack, K. E. 2007. DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 64
Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum
C2 - Non-edited contributions to conferences
Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .
Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms
C2 - Non-edited contributions to conferences
Jing, H-C. and Hammond-Kosack, K. E. 2007. Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 377-378
Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley
C2 - Non-edited contributions to conferences
Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .
Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley
C2 - Non-edited contributions to conferences
Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .
Grain fungus genome published
G - Articles in popular magazines and other technical publications
Antoniw, J. F., Baldwin, T., Urban, M. and Hammond-Kosack, K. E. 2007. Grain fungus genome published. EPSO News. No. 3.
Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat
C2 - Non-edited contributions to conferences
Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54
Using natural barley resources to discover novel alleles of eIF4E which can provide resistance against bymoviruses
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C. G., Baldwin, T. and Kanyuka, K. 2007. Using natural barley resources to discover novel alleles of eIF4E which can provide resistance against bymoviruses. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .
Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .
Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 53
Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .
Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .
Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .
Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears
C2 - Non-edited contributions to conferences
Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .
The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
A - Papers appearing in refereed journals
Cuomo, C. A., Guldener, U., Xu, J-R., Trail, F., Turgeon, B. G., Di Pietro, A., Walton, J. D., Ma, L-J., Baker, S. E., Rep, M., Adam, G., Antoniw, J. F., Baldwin, T., Calvo, S., Chang, Y-L., Decaprio, D., Gale, L. R., Gnerre, S., Goswami, R. S., Hammond-Kosack, K. E., Harris, L. J., Hilburn, K., Kennell, J. C., Kroken, S., Magnuson, J. K., Mannhaupt, G., Mauceli, E., Mewes, H-W., Mitterbauer, R., Munsterkotter, M., Nelson, D., O'donnell, K., Ouellet, T., Qi, W., Quesneville, H., Roncero, M. I. G., Seong, K-Y., Tetko, I. V., Urban, M., Waalwijk, C., Ward, T. J., Yao, J., Birren, B. W. and Kistler, H. C. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science - AAAS. 317, pp. 1400-1402.
Identifying resistance to Fusarium Ear Blight in wheat
C2 - Non-edited contributions to conferences
Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2007. Identifying resistance to Fusarium Ear Blight in wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .
Exploring resistance to Fusarium ear blight
C2 - Non-edited contributions to conferences
Lee, S. and Hammond-Kosack, K. E. 2007. Exploring resistance to Fusarium ear blight. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .
Barley eIF4E recessive resistance genes to soil-borne mosaic viruses
C2 - Non-edited contributions to conferences
Kanyuka, K. 2007. Barley eIF4E recessive resistance genes to soil-borne mosaic viruses. Abstracts 4th UK Small Grain Cereals Genetic and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .
Identification of variant natural and chemically induced alleles of EIF4E in barley for control of bymoviruses
C2 - Non-edited contributions to conferences
Bass, C. G., Baldwin, T., Tymon, A. and Kanyuka, K. 2007. Identification of variant natural and chemically induced alleles of EIF4E in barley for control of bymoviruses. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 287
New methods to understand quantitative resistance to Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape
C2 - Non-edited contributions to conferences
Latunde-Dada, A. O., West, J. S., Measures, S., Huang, Y-J., Pirie, E. J. and Fitt, B. D. L. 2007. New methods to understand quantitative resistance to Leptosphaeria maculans and Pyrenopeziza brassicae in oilseed rape. Abstracts 12th International Rapeseed Congress, Wuhan, 26-30 March 2007 .
Effects of temperature and rainfall on date of release of ascospores of Leptosphaeria maculans (phoma stem canker) from winter oilseed rape (Brassica napus) debris in the UK
A - Papers appearing in refereed journals
Huang, Y-J., Liu, Z., West, J. S., Todd, A. D., Hall, A. M. and Fitt, B. D. L. 2007. Effects of temperature and rainfall on date of release of ascospores of Leptosphaeria maculans (phoma stem canker) from winter oilseed rape (Brassica napus) debris in the UK. Annals of Applied Biology. 151 (1), pp. 99-111.
Resistance to infection by stealth: Brassica napus (winter oilseed rape) and Pyrenopeziza brassicae (light leaf spot)
A - Papers appearing in refereed journals
Boys, E. F., Roques, S. E., Ashby, A. M., Evans, N., Latunde-Dada, A. O., Thomas, J. E., West, J. S. and Fitt, B. D. L. 2007. Resistance to infection by stealth: Brassica napus (winter oilseed rape) and Pyrenopeziza brassicae (light leaf spot). European Journal of Plant Pathology. 118, pp. 307-321.
PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants
C2 - Non-edited contributions to conferences
Baldwin, T. K., Winnenburg, R., Beacham, A., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2007. PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .
Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm
C2 - Non-edited contributions to conferences
Zlatska, A., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm. Abstracts 15th International Conference on Plant and Animal Genomes, San Diego, 13-17 January 2007 .
Understanding Sclerotinia infection in oilseed rape to improve risk assessment and disease escape
C1 - Edited contributions to conferences/learned societies
Young, C. S., Werner, C. P., West, J. S., Smith, J. A. and Rogers, S. L. 2007. Understanding Sclerotinia infection in oilseed rape to improve risk assessment and disease escape. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 140-143
Leptosphaeria maculans avirulence management for durable control of phoma stem canker on oilseed rape
C1 - Edited contributions to conferences/learned societies
West, J. S., Latunde-Dada, A. O., Rogers, S. L., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2007. Leptosphaeria maculans avirulence management for durable control of phoma stem canker on oilseed rape. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 2-4
Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts 24th Fungal Genetics Conference, Asilomar, 20-25 March 2007 . pp. 152
Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host
A - Papers appearing in refereed journals
Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions - MPMI. 20 (2), pp. 178-193.
Integration of molecular diagnostics and air sampling to study plant pathogens
C2 - Non-edited contributions to conferences
West, J. S., Fraaije, B. A., Motteram, J., Rogers, S. L., Lacey, M. E. and Lucas, J. A. 2006. Integration of molecular diagnostics and air sampling to study plant pathogens. Abstracts 8th International Congress on Aerobiology, Neuchatel, 21-25 August 2006 . pp. 260
Simultaneous identification of plant stresses and diseases in arable crops using proximal optical sensing and self-organising maps
A - Papers appearing in refereed journals
Moshou, D., Bravo, C., Wahlen, S., West, J. S., McCartney, H. A., De Baerdemaeker, J. and Ramon, H. 2006. Simultaneous identification of plant stresses and diseases in arable crops using proximal optical sensing and self-organising maps. Precision Agriculture. 7, pp. 149-164.
Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum
C2 - Non-edited contributions to conferences
Bass, C. G., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum. Abstracts 8th European Conference of Fungal Genetics, Vienna, 8-11 April 2006 . pp. 364
Avirulence management for durable control of stem canker of oilseed rape in Europe
C1 - Edited contributions to conferences/learned societies
West, J. S., Latunde-Dada, A. O., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2006. Avirulence management for durable control of stem canker of oilseed rape in Europe. Delivering Sustainability within Profitable Farming Systems - is it Possible? Aspects of Applied Biology 80 . pp. 171-176
Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host
C2 - Non-edited contributions to conferences
Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .
The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host
C2 - Non-edited contributions to conferences
Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Hammond-Kosack, K. E. and Rudd, J. J. 2006. The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 351
Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships
G - Articles in popular magazines and other technical publications
Jing, H-C and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. April, pp. 2-3.
Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships
G - Articles in popular magazines and other technical publications
Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.
Building trans-Atlantic links in fight against plant pathogen
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2006. Building trans-Atlantic links in fight against plant pathogen. BBSRC Business. October 2006, p. 4.
The host: Resistance gene isolation and realising the potential
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E. 2006. The host: Resistance gene isolation and realising the potential. Abstracts British Society for Plant Pathology 25th Anniversary Celebratory Meeting, London, 19 December 2006 .
BIOEXPLOIT Project
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E., Tomas, J. and Smant, G. 2006. BIOEXPLOIT Project. EUCARPIA Bulletin. 33, pp. 32-35.
To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2
D1 - Technical reports: non-confidential
Hammond-Kosack, K. E. 2006. To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2.
Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2
D1 - Technical reports: non-confidential
Hammond-Kosack, K. E. 2006. Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2.
Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene
A - Papers appearing in refereed journals
Barker, C. L., Baillie, B. K., Hammond-Kosack, K. E., Jones, J. D. G. and Jones, D. A. 2006. Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal. 46, pp. 385-399.
Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Baldwin, T. K., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. In %Abstracts Syngenta Postgraduate Symposium, Bracknell, 14 September 2006 .
Forward genetics for gene discovery in wheat
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22
Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Baldwin, T. K., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts 9th International Fungal Biology Conference and 16th New Phytologist Symposium on Impact of Genomics on Fungal Biology, Nancy, 18-20 September 2006 . pp. 17-18
Triticum monococcum, the ancient grain which turned stone age nomads into farmers
C2 - Non-edited contributions to conferences
Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13
The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity
A - Papers appearing in refereed journals
Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Molecular Plant-Microbe Interactions - MPMI. 19 (12), pp. 1451-1462.
Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .
Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis
C2 - Non-edited contributions to conferences
Cuzick, A., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2006. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts 17th International Conference on Arabidopsis Research, Madison, 28 June-2 July 2006 .
The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat
A - Papers appearing in refereed journals
Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2006. The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome. 49, pp. 1140-1148.
Improving the diversity of resistance in wheat to Fusarium ear blight disease
C2 - Non-edited contributions to conferences
Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of resistance in wheat to Fusarium ear blight disease. Abstracts 9th European Fusarium Seminar, Wageningen, 19-22 September 2006 . pp. 100
The air spora: a manual for catching and identifying airborne biological particles
E - Books edited/written by staff member, alone/with others
Lacey, M. E. and West, J. S. 2006. The air spora: a manual for catching and identifying airborne biological particles. Springer, Dordrecht.
Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens Meeting, Birnam, 18-20 September 2006 .
Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Annual Scientific Meeting of the British Mycological Society, Birmingham, 4-7 September 2006 . pp. 68
Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Biology and Bioscience CASE PhD Open Day, Bracknell, 14 September 2006 .
Coexistence of related pathogen species on arable crops in space and time
A - Papers appearing in refereed journals
Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F. and West, J. S. 2006. Coexistence of related pathogen species on arable crops in space and time. Annual Review of Phytopathology. 44, pp. 163-182.
Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease
C2 - Non-edited contributions to conferences
Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease. Abstracts Cranfield University Postgraduate Conference, Cranfield, 29 June 2006 .
Functionality of resistance gene Hero which controls plant root-infecting potato cyst nematodes, in leaves of tomato
A - Papers appearing in refereed journals
Caberera Poch, H. L., Manzanilla-Lopez, R. H. and Kanyuka, K. 2006. Functionality of resistance gene Hero which controls plant root-infecting potato cyst nematodes, in leaves of tomato. Plant, Cell and Environment. 29 (7), pp. 1372-1378.
Dispersal of foliar plant pathogens: mechanisms, gradients and spatial patterns
B - Book chapters etc edited externally
McCartney, H. A., Fitt, B. D. L. and West, J. S. 2006. Dispersal of foliar plant pathogens: mechanisms, gradients and spatial patterns. in: Cooke, B. M., Kaye, B. and Gareth-Jones, D. (ed.) Epidemiology of plant diseases, 2nd ed. Springer, Amsterdam. pp. 159-192
Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus
C2 - Non-edited contributions to conferences
Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2006. Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus. Abstracts International Conference on Advances in Plant Virology, Warwick, 5-7 April 2006 .
Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat
C2 - Non-edited contributions to conferences
Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 355
Improved resistance management for durable disease control: a case study of phoma stem canker of oilseed rape (Brassica napus)
A - Papers appearing in refereed journals
Aubertot, J. N., West, J. S., Bousset-Vaslin, L., Salam, M. U., Barbetti, M. J. and Diggle, A. J. 2006. Improved resistance management for durable disease control: a case study of phoma stem canker of oilseed rape (Brassica napus). European Journal of Plant Pathology. 114, pp. 91-106.
PHI-base: a new database for pathogen host interactions
A - Papers appearing in refereed journals
Winnenburg, R., Baldwin, T. K., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. PHI-base: a new database for pathogen host interactions. Nucleic Acids Research. 34 (1), pp. D459-D464.
Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts Molecular Biology of Plant Pathogens Meeting, Ambleside, 19-21 September 2005 .
Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears
C2 - Non-edited contributions to conferences
Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts ESF-EMBO Symposium on the Comparative Genomics of Eukaryotic Microorganisms, Sant Feliu de Guixols, 12-17 November 2005 .
Plant disease detection based on data fusion of hyper-spectral and multi-spectral fluorescence imaging using Kohonen maps
A - Papers appearing in refereed journals
Moshou, D., Bravo, C., Oberti, R., West, J. S., Bodria, L., McCartney, H. A. and Ramon, H. 2005. Plant disease detection based on data fusion of hyper-spectral and multi-spectral fluorescence imaging using Kohonen maps. Real-Time Imaging. 11, pp. 75-83.
The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses
C2 - Non-edited contributions to conferences
Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2005. The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 113
Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola
C2 - Non-edited contributions to conferences
Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 137
The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola
A - Papers appearing in refereed journals
Fraaije, B. A., Cools, H. J., Fountaine, J., Lovell, D. J., Motteram, J., West, J. S. and Lucas, J. A. 2005. The role of ascospores in further spread of QoI-resistant cytochrome b alleles (G143A) in field populations of Mycosphaerella graminicola. Phytopathology. 95 (8), pp. 933-941.
The use of PCR methods for Polymyxa graminis to study intraspecific variation, phylogeny and inoculum levels
C2 - Non-edited contributions to conferences
Ward, E., Motteram, J., Kanyuka, K. and Adams, M. J. 2005. The use of PCR methods for Polymyxa graminis to study intraspecific variation, phylogeny and inoculum levels. Abstracts 6th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Bologna, 5-7 September 2005 .
The umb 1 mutant of Arabidopsis provides evidence for a role of BIG protein in metabolism and nutrient signalling
C2 - Non-edited contributions to conferences
Ghneim, T., Kanyuka, K., Smirnoff, N. and Hooley, R. 2005. The umb 1 mutant of Arabidopsis provides evidence for a role of BIG protein in metabolism and nutrient signalling. Abstracts Plant Biology 2005: Annual Meeting of the American Society of Plant Biologists, Seattle, 16-20 July 2005 .
Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling
C2 - Non-edited contributions to conferences
Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .
New approaches for durable disease resistance in wheat
C1 - Edited contributions to conferences/learned societies
Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970
Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling
A - Papers appearing in refereed journals
Keon, J. P. R., Rudd, J. J., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling. Molecular Plant Pathology. 6 (5), pp. 527-540.
Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis
C2 - Non-edited contributions to conferences
Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts LAMP (London Area Molecular Plant Sciences) Meeting, Wye, 5 October 2005 .
Population dynamics and dispersal of Leptosphaeria maculans (blackleg of canola)
A - Papers appearing in refereed journals
West, J. S. and Fitt, B. D. L. 2005. Population dynamics and dispersal of Leptosphaeria maculans (blackleg of canola). Australasian plant pathology. 34, pp. 457-461.
Factors affecting co-existence of related pathogen species on arable crops
C2 - Non-edited contributions to conferences
West, J. S., Huang, Y-J., Van Den Bosch, F. and Fitt, B. D. L. 2005. Factors affecting co-existence of related pathogen species on arable crops. Abstracts 15th Biennial Australasian Plant Pathology Society Conference, Geelong, Australia, 26-29 September 2005 . pp. 92
Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp
A - Papers appearing in refereed journals
Eckert, M., Maguire, K. L., Urban, M., Foster, S. J., Fitt, B. D. L., Lucas, J. A. and Hammond-Kosack, K. E. 2005. Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp. FEMS Microbiology Letters. 253, pp. 67-74.
Enhanced avirulence management for durable control of blackleg in Europe
C1 - Edited contributions to conferences/learned societies
West, J. S., Latunde-Dada, A. O., Huang, Y-J., Evans, N. and Fitt, B. D. L. 2005. Enhanced avirulence management for durable control of blackleg in Europe. Proceedings 14th Australian Research Assembly on Brassicas, Port Lincoln, South Australia, 3-7 October 2005 . pp. 76-81
Towards a sustainable whole-farm approach to the control of ergot
G - Articles in popular magazines and other technical publications
West, J. S. 2005. Towards a sustainable whole-farm approach to the control of ergot. RRA Newsletter. No 19, p. 2.
Evidence for the eastward spread of the aggressive oilseed rape pathogen Leptosphaeria maculans in Europe
C1 - Edited contributions to conferences/learned societies
West, J. S., Fitt, B. D. L., Jedryczka, M. and Karolewski, Z. 2005. Evidence for the eastward spread of the aggressive oilseed rape pathogen Leptosphaeria maculans in Europe. Plant Protection and Plant Health in Europe: Introduction and Spread of Invasive Species. British Crop Protection Council Symposium Proceedings No 81 . British Crop Protection Council (BCPC). pp. 293-294
Natural and induced barley e1F4E gene mutants provide resistance to bymoviruses: a conserved antiviral resistance mechanism in plants
C2 - Non-edited contributions to conferences
Kanyuka, K., Druka, A., Caldwell, D. G., Tymon, A., Mccallum, N., Waugh, R. and Adams, M. J. 2005. Natural and induced barley e1F4E gene mutants provide resistance to bymoviruses: a conserved antiviral resistance mechanism in plants. Abstracts 6th Symposium International Working Group on Plant Viruses with Fungal Vectors (IWGPVFV), Bologna, 5-7 September 2005 .
Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1
C2 - Non-edited contributions to conferences
Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .
Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis
C2 - Non-edited contributions to conferences
Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 4th Plant Genomics European Meetings (Plant-GEMs 4), Amsterdam, 20-23 September 2005 .
Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat
C2 - Non-edited contributions to conferences
Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2005. Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Lovain-la-Neuve, 12-14 September 2005 .
Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus
C2 - Non-edited contributions to conferences
Lyons, R., Hammond-Kosack, K. E., Dickinson, M. and Kanyuka, K. 2005. Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Louvain-la-Neuve, 12-14 September 2005 . pp. 57
Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis
C2 - Non-edited contributions to conferences
Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 16th International Conference on Arabidopsis Research, Madison, 15-19 June 2005 . pp. No 530
Evidence that the recessive bymovirus resistance locus rym 4 in barley corresponds to the eukaryotic translation initiation factor 4E gene
A - Papers appearing in refereed journals
Kanyuka, K., Druka, A., Caldwell, D. G., Tymon, A., Mccallum, N., Waugh, R. and Adams, M. J. 2005. Evidence that the recessive bymovirus resistance locus rym 4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Molecular Plant Pathology. 6 (4), pp. 449-458.
Integration of spore trapping with molecular techniques to enhance epidemiological studies
C2 - Non-edited contributions to conferences
West, J. S., McCartney, H. A., Fountaine, J., Fraaije, B. A., Lee, I. K. and Lucas, J. A. 2005. Integration of spore trapping with molecular techniques to enhance epidemiological studies. Abstracts 9th International Workshop on Plant Disease Epidemiology, Rennes, 10-15 April 2005 . pp. 65
Patterns of ascospore release in relation to phoma stem canker epidemiology in England (Leptosphaeria maculans ) and Poland (Leptosphaeria biglobosa )
A - Papers appearing in refereed journals
Huang, Y-J., Fitt, B. D. L., Jedryczka, M., Dakowska, S., West, J. S., Gladders, P., Steed, J. M. and Li, Z-Q. 2005. Patterns of ascospore release in relation to phoma stem canker epidemiology in England (Leptosphaeria maculans ) and Poland (Leptosphaeria biglobosa ). European Journal of Plant Pathology. 111, pp. 263-277.
Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici)
A - Papers appearing in refereed journals
Keon, J. P. R., Antoniw, J. F., Rudd, J. J., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici). Fungal Genetics and Biology. 42, pp. 376-389.
The use of conventional and quantitative real-time PCR assays for Polymyxa graminis to examine host plant resistance, inoculum levels and intraspecific variation
A - Papers appearing in refereed journals
Ward, E., Kanyuka, K., Motteram, J., Kornyukhin, D. and Adams, M. J. 2005. The use of conventional and quantitative real-time PCR assays for Polymyxa graminis to examine host plant resistance, inoculum levels and intraspecific variation. New Phytologist. 165 (3), pp. 875-885.
COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR
G - Articles in popular magazines and other technical publications
West, J. S., Thomas, J., Gladders, P., Booth, E., Latunde-Dada, A. O., Evans, N. and Fitt, B. D. L. 2005. COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR. RRA Newsletter. No 16, p. 4.
Comparing fungal diseases on oilseed rape in England, France and Poland
C1 - Edited contributions to conferences/learned societies
West, J. S., Jedryczka, M., Penaud, A. and Fitt, B. D. L. 2004. Comparing fungal diseases on oilseed rape in England, France and Poland.
DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004)
D1 - Technical reports: non-confidential
Hammond-Kosack, K. E. 2004. DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004).
A perspective on the measurement of time in plant disease epidemiology
A - Papers appearing in refereed journals
Lovell, D. J., Powers, S. J., Welham, S. J. and Parker, S. R. 2004. A perspective on the measurement of time in plant disease epidemiology. Plant Pathology. 53 (6), pp. 705-712.
Automatic detection of 'yellow rust' in wheat using reflectance measurements and neural networks
A - Papers appearing in refereed journals
Moshou, D., Bravo, C., West, J. S., Wahlen, S., McCartney, H. A. and Ramon, H. 2004. Automatic detection of 'yellow rust' in wheat using reflectance measurements and neural networks. Computers and Electronics in Agriculture. 44, pp. 173-188.
COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR
G - Articles in popular magazines and other technical publications
West, J. S., Thomas, J., Gladders, P., Booth, E., Latunde-Dada, A. O., Evans, N. and Fitt, B. D. L. 2004. COmponents of Resistance to DISeases in winter Oilseed Rape: CORDISOR. GCIRC Bulletin. 21, pp. 79-81.
Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi
C2 - Non-edited contributions to conferences
Maguire, K., Dickinson, M., Bowyer, P., Perrone, S., Lucas, J. A. and Hammond-Kosack, K. E. 2004. Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi. Abstracts 7th European Conference on Fungal Genetics, Copenhagen, 17-20 April 2004 .
Can biotechnology and genomics offer better routes to crop protection?
G - Articles in popular magazines and other technical publications
Jones, H. D. and Kanyuka, K. 2004. Can biotechnology and genomics offer better routes to crop protection? Outlooks on Pest Management. 15, pp. 217-221.
Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops
C1 - Edited contributions to conferences/learned societies
Hammond-Kosack, K. E., Urban, M., Baldwin, T., Daudi, A., Rudd, J. J., Keon, J., Lucas, J. A., Magiure, K., Kornyukhin, D., Jing, H-C., Bass, C. G. and Antoniw, J. F. 2004. Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26 September-1 October 2004 . Regional Institute, Gosford. pp. www.cropscience.org.au
A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance
A - Papers appearing in refereed journals
Kanyuka, K., Lovell, D. J., Mitrofanova, O. P., Hammond-Kosack, K. E. and Adams, M. J. 2004. A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance. Plant Pathology. 53 (2), pp. 154-160.
Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene
A - Papers appearing in refereed journals
Kanyuka, K., Mcgrann, G. R. D., Alhudaib, K., Hariri, D. and Adams, M. J. 2004. Biological and sequence analysis of a novel European isolate of Barley mild mosaic virus that overcomes the barley rym5 resistance gene. Archives of Virology. 149, pp. 1469-1480.
Position of inoculum in the canopy affects the risk of septoria tritici blotch epidemics in winter wheat
A - Papers appearing in refereed journals
Lovell, D. J., Parker, S. R., Hunter, T., Welham, S. J. and Nichols, A. R. 2004. Position of inoculum in the canopy affects the risk of septoria tritici blotch epidemics in winter wheat. Plant Pathology. 53 (1), pp. 11-21.
Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions
A - Papers appearing in refereed journals
Lovell, D. J., Hunter, T., Powers, S. J., Parker, S. R. and Van Den Bosch, F. 2004. Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions. Plant Pathology. 53 (2), pp. 170-181.
A rational basis for the design of wheat canopy ideotypes
C1 - Edited contributions to conferences/learned societies
Parker, S. R., Berry, P. M., Paveley, N. D., Van Den Bosch, F. and Lovell, D. J. 2003. A rational basis for the design of wheat canopy ideotypes. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 1101-1106
Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi
C2 - Non-edited contributions to conferences
Maguire, K., Dickinson, M., Bowyer, P., Lucas, J. A. and Hammond-Kosack, K. E. 2003. Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi. Abstracts BSPP Presidential Meeting 2003: Plant Pathogen Genomics - from Sequence to Application, Nottingham, 15-18 December 2003 . pp. 42-43
Use of MAR sequences to stabilise the expression of a HMW glutenin subunit gene in transgenic wheat
C2 - Non-edited contributions to conferences
Doherty, A., West, J. S., Sparks, C. A., Stone, M. C., Cannell, M. and Jones, H. D. 2003. Use of MAR sequences to stabilise the expression of a HMW glutenin subunit gene in transgenic wheat. Proceedings 10th International Wheat Genetics Symposium, Paestum, Italy, 1-6 September 2003 .
The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia
A - Papers appearing in refereed journals
Urban, M., Mott, E., Farley, T. and Hammond-Kosack, K. E. 2003. The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia. Molecular Plant Pathology. 4 (5), pp. 347-359.
Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis
G - Articles in popular magazines and other technical publications
Lovell, D. J., Parker, S. R., Baldwin, S. and Fraaije, B. A. 2003. Peduncle rot of dwarf wheat caused by Rhizoctonia cerealis. Plant Health Progress. July 2003, p. http://www.plantmanagementnetwork.org/.
p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens
A - Papers appearing in refereed journals
Von Roepenack-Lahaye, E., Newman, M-A., Schornack, S., Hammond-Kosack, K. E., Lahaye, T., Jones, J. D. G., Daniels, M. J. and Dow, J. M. 2003. p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens. Journal of Biological Chemistry. 278, pp. 43373-43383.
The potential of optical canopy measurement for targeted control of field crop diseases
A - Papers appearing in refereed journals
West, J. S., Bravo, C., Oberti, R., Lemaire, D., Moshou, D. and McCartney, H. A. 2003. The potential of optical canopy measurement for targeted control of field crop diseases. Annual Review of Phytopathology. 41, pp. 593-614.
Development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape in England in relation to thermal time
C1 - Edited contributions to conferences/learned societies
Fitt, B. D. L., Sun, P., Steed, J. M., Toscano-Underwood, C. and West, J. S. 2003. Development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape in England in relation to thermal time. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1148-1150
Use of fungicides to control early and late epidemics of stem canker (Leptosphaeria maculans ) in winter oilseed rape in England
C2 - Non-edited contributions to conferences
Gladders, P., Mcdonough, S., Fitt, B. D. L., Steed, J. M. and West, J. S. 2003. Use of fungicides to control early and late epidemics of stem canker (Leptosphaeria maculans ) in winter oilseed rape in England. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1151
Polymyxa graminis and the cereal viruses it transmits: a research challenge
A - Papers appearing in refereed journals
Kanyuka, K., Ward, E. and Adams, M. J. 2003. Polymyxa graminis and the cereal viruses it transmits: a research challenge. Molecular Plant Pathology. 4 (5), pp. 393-406.
The ability of a bymovirus to overcome the rym4- mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1
A - Papers appearing in refereed journals
Kuhne, T., Shi, N., Proeseler, G., Adams, M. J. and Kanyuka, K. 2003. The ability of a bymovirus to overcome the rym4- mediated resistance in barley correlates with a codon change in the VPg coding region on RNA1. Journal of General Virology. 84, pp. 2853-2859.
Manipulating the expression of cytosolic glutamine synthetase in wheat of four different genetic backgrounds
C2 - Non-edited contributions to conferences
Bernard, S. M., West, J. S., Foyer, C. H. and Habash, D. 2003. Manipulating the expression of cytosolic glutamine synthetase in wheat of four different genetic backgrounds.
Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses
A - Papers appearing in refereed journals
Kanyuka, K., Praekelt, U., Franklin, K. A., Billingham, O. E., Hooley, R., Whitelam, G. C. and Halliday, K. J. 2003. Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. The Plant Journal. 35 (1), pp. 57-70.
Predicting latent infection around stripe rust foci for spatially variable fungicide application
C2 - Non-edited contributions to conferences
West, J. S. and McCartney, H. A. 2003. Predicting latent infection around stripe rust foci for spatially variable fungicide application. Abstracts 8th International Congress of Plant Pathology, Christchurch, 2-7 February 2003 . pp. 113
Optical detection of wheat stripe rust disease foci for spatially variable fungicide application
C2 - Non-edited contributions to conferences
McCartney, H. A., Lemaire, D., Bravo, C., Oberti, R. and West, J. S. 2003. Optical detection of wheat stripe rust disease foci for spatially variable fungicide application. Abstracts 8th International Congress of Plant Pathology, Christchurch, 2-7 February 2003 . pp. 273
Early disease detection in wheat fields using spectral reflectance
A - Papers appearing in refereed journals
Bravo, C., Moshou, D., West, J. S., McCartney, H. A. and Ramon, H. 2003. Early disease detection in wheat fields using spectral reflectance. Biosystems Engineering. 84 (2), pp. 137-145.
Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding
A - Papers appearing in refereed journals
Hammond-Kosack, K. E. and Parker, J. E. 2003. Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology. 14, pp. 177-193.
Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum
C2 - Non-edited contributions to conferences
Daudi, A., Urban, M. and Hammond-Kosack, K. E. 2003. Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum. Abstracts SCI Student Conference on Advances in Fungal Control Strategies, Bracknell, 29 April 2003 .
Transposon tagging in hexaploid wheat
C2 - Non-edited contributions to conferences
Pastori, G. M., West, J. S. and Foyer, C. H. 2002. Transposon tagging in hexaploid wheat. Abstracts AAB Meeting Genotype-Phenotype: Narrowing the Gap, Cirencester, 16-18 December 2002 .
Improving and exploiting 'self-defence' against wheat diseases
C1 - Edited contributions to conferences/learned societies
Paveley, N. D., Parker, S. R., Foulkes, M. J., Sylvester-Bradley, R., Snape, J., Farrar, J., Lovell, D. J., Neumann, S., Ellerbrook, C. and Greenhouse, J. 2002. Improving and exploiting 'self-defence' against wheat diseases. Proceedings H-GCA R & D Conference on Agronomic Intelligence: the Basis of Profitable Production . Home Grown Cereals Authority (HGCA) London. pp. 14.1-14.9
Improving and exploiting self-defence against wheat diseases
C1 - Edited contributions to conferences/learned societies
Parker, S. R., Paveley, N. D., Foulkes, M. J., Lovell, D. J., Welham, S. J. and Worland, A. J. 2002. Improving and exploiting self-defence against wheat diseases. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 919-924
In field disease and nutrient stress detection by imaging spectrography at canopy level
C2 - Non-edited contributions to conferences
Bravo, C., Moshou, D., West, J. S., Ramon, H. and McCartney, H. A. 2002. In field disease and nutrient stress detection by imaging spectrography at canopy level. Proceedings AgEng 2002, Budapest, 30 June-4 July 2002 .
Detection of foliar disease in the field by the fusion of measurements made by optical sensors
C2 - Non-edited contributions to conferences
Bravo, C., Moshou, D., Oberti, R., West, J. S., McCartney, H. A., Bodria, L. and Ramon, H. 2002. Detection of foliar disease in the field by the fusion of measurements made by optical sensors. Proceedings ASAE Annual International Meeting/CIGR 15th World Congress, Chicago, 28-31 July 2002 .
Understanding field resistance mechanisms for improved control of Septoria tritici
C1 - Edited contributions to conferences/learned societies
Lovell, D. J., Parker, S. R., Paveley, N. D. and Worland, A. J. 2002. Understanding field resistance mechanisms for improved control of Septoria tritici.
Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape
C1 - Edited contributions to conferences/learned societies
Fraaije, B. A., Lovell, D. J. and Baldwin, S. 2002. Septoria epidemics on wheat: combined use of visual assessment and PCR-based diagnostics to identify mechanisms of disease escape.
Quantification of raindrop kinetic energy for improved prediction of splash-dispersed pathogens
A - Papers appearing in refereed journals
Lovell, D. J., Parker, S. R., Van Peteghem, P., Webb, D. A. and Welham, S. J. 2002. Quantification of raindrop kinetic energy for improved prediction of splash-dispersed pathogens. Phytopathology. 92 (5), pp. 497-503.
The voice of the future 2002
G - Articles in popular magazines and other technical publications
West, J. S. 2002. The voice of the future 2002. AAB News. 49, pp. 5-6.
Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum
A - Papers appearing in refereed journals
Urban, M., Daniels, S., Mott, E. and Hammond-Kosack, K. E. 2002. Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum. The Plant Journal. 32 (6), pp. 961-973.
Effects of temperature and incubation time on germination of ascospores of Leptosphaeria maculans and Leptosphaeria biglobosa in vitro
C1 - Edited contributions to conferences/learned societies
Huang, Y-J., Fitt, B. D. L., Toscano-Underwood, C., Todd, A. D., West, J. S., Hall, A. and Jedryczka, M. 2002. Effects of temperature and incubation time on germination of ascospores of Leptosphaeria maculans and Leptosphaeria biglobosa in vitro.
La necrose du collet du colza: analyse de la distribution du champignon dans la plante a l'aide d'outils moleculaires
G - Articles in popular magazines and other technical publications
Schmit, J., West, J. S., Narcy, J-P., Roux, J., Balesdent, M-H., Rouxel, T. and Gout, L. 2002. La necrose du collet du colza: analyse de la distribution du champignon dans la plante a l'aide d'outils moleculaires. OCL - Oilseeds and fats, Crops and Lipids. 9(2-3), pp. 79-85.
New perspectives on the epidemiology and management of phoma stem canker of winter oilseed rape in England
C1 - Edited contributions to conferences/learned societies
West, J. S., Huang, Y-J., Steed, J. M., Leech, P. K., Fitt, B. D. L. and Gladders, P. 2002. New perspectives on the epidemiology and management of phoma stem canker of winter oilseed rape in England. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 563-568
Biology of Leptosphaeria maculans ascospore release in England and Poland
C1 - Edited contributions to conferences/learned societies
West, J. S., Jedryczka, M., Leech, P. K., Dakowska, S., Huang, Y-J., Steed, J. M. and Fitt, B. D. L. 2002. Biology of Leptosphaeria maculans ascospore release in England and Poland.
Effects of timing on Leptosphaeria maculans ascospore release and fungicide regime on phoma leaf spot and phoma stem canker development on winter oilseed rape (Brassica napus ) in southern England
A - Papers appearing in refereed journals
West, J. S., Fitt, B. D. L., Leech, P. K., Biddulph, J. E., Huang, Y-J. and Balesdent, M-H. 2002. Effects of timing on Leptosphaeria maculans ascospore release and fungicide regime on phoma leaf spot and phoma stem canker development on winter oilseed rape (Brassica napus ) in southern England. Plant Pathology. 51 (4), pp. 454-463.
Colonization of winter oilseed rape tissues by A/Tox+ and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England
A - Papers appearing in refereed journals
West, J. S., Balesdent, M-H., Rouxel, T., Narcy, J. P., Huang, Y-J., Roux, J., Steed, J. M., Fitt, B. D. L. and Schmit, J. 2002. Colonization of winter oilseed rape tissues by A/Tox+ and B/Tox0 Leptosphaeria maculans (phoma stem canker) in France and England. Plant Pathology. 51 (3), pp. 311-321.
Stimulation of Armillaria mellea by phenolic fungicides
A - Papers appearing in refereed journals
West, J. S. and Fox, R. T. V. 2002. Stimulation of Armillaria mellea by phenolic fungicides. Annals of Applied Biology. 140 (3), pp. 291-295.
The effect of rainfall on the survivorship and establishment of a biocontrol agent
A - Papers appearing in refereed journals
Norris, R. J., Memmott, J. and Lovell, D. J. 2002. The effect of rainfall on the survivorship and establishment of a biocontrol agent. Journal of Applied Ecology. 39, pp. 226-234.
Optical disease detection and estimation of latent infections around disease foci for targeted pesticide application
C1 - Edited contributions to conferences/learned societies
West, J. S. and McCartney, H. A. 2002. Optical disease detection and estimation of latent infections around disease foci for targeted pesticide application. International Advances in Pesticide Application. Aspects of Applied Biology 66 . pp. 463-468
Quantifying the benefits of seed treatment for foliar disease control
C1 - Edited contributions to conferences/learned societies
Parker, S. R. and Lovell, D. J. 2001. Quantifying the benefits of seed treatment for foliar disease control. Seed Treatment: Challenges and Opportunities. BCPC Symposium Proceedings No. 76 . British Crop Protection Council (BCPC). pp. 181-188
Improving stem canker control in winter oilseed rape by accurate timing of fungicide applications based on disease forecasts (HGCA Project Report No. OS51)
D1 - Technical reports: non-confidential
Gladders, P., Green, M. R., Steed, J. M., West, J. S. and Fitt, B. D. L. 2001. Improving stem canker control in winter oilseed rape by accurate timing of fungicide applications based on disease forecasts (HGCA Project Report No. OS51). Home Grown Cereals Authority (HGCA) London.
Precision disease detection
G - Articles in popular magazines and other technical publications
West, J. S. and McCartney, H. A. 2001. Precision disease detection. ARIA newsletter. Issue 5.
PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita ) diseases
A - Papers appearing in refereed journals
Fraaije, B. A., Lovell, D. J., Coelho, J. M., Baldwin, S. and Hollomon, D. W. 2001. PCR-based assays to assess wheat varietal resistance to blotch (Septoria tritici and Stagonospora nododrum ) and rust (Puccinia striiformis and Puccinia recondita ) diseases. European Journal of Plant Pathology. 107, pp. 905-917.
Factors affecting development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape (Brassica napus ) in southern England
A - Papers appearing in refereed journals
Sun, P., Fitt, B. D. L., Steed, J. M., Toscano-Underwood, C. and West, J. S. 2001. Factors affecting development of phoma canker (Leptosphaeria maculans ) on stems of winter oilseed rape (Brassica napus ) in southern England. Annals of Applied Biology. 139 (2), pp. 227-242.
Effects of temperature on germination and hyphal growth from ascospores of A-group and B-group Leptosphaeria maculans (phoma stem canker of oilseed rape)
A - Papers appearing in refereed journals
Huang, Y-J., Toscano-Underwood, C., Fitt, B. D. L., Todd, A. D., West, J. S., Koopmann, B. and Balesdent, M-H. 2001. Effects of temperature on germination and hyphal growth from ascospores of A-group and B-group Leptosphaeria maculans (phoma stem canker of oilseed rape). Annals of Applied Biology. 139 (2), pp. 193-207.
Modelling of rain splash trajectories and prediction of rain splash height
A - Papers appearing in refereed journals
Pietravalle, S., Van Den Bosch, F., Welham, S. J., Parker, S. R. and Lovell, D. J. 2001. Modelling of rain splash trajectories and prediction of rain splash height. Agricultural and Forest Meteorology. 109, pp. 171-185.
Quantification of raindrop kinetic energy for improved risk assessment of splash dispersed diseases
C2 - Non-edited contributions to conferences
Lovell, D. J., Parker, S. R. and Pietravalle, S. 2001. Quantification of raindrop kinetic energy for improved risk assessment of splash dispersed diseases. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .
Understanding and exploiting disease escape in winter wheat
C2 - Non-edited contributions to conferences
Parker, S. R., Lovell, D. J., Worland, A. and Paveley, N. D. 2001. Understanding and exploiting disease escape in winter wheat. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .
Understanding epidemics as a basis for developing fungicide strategies
C2 - Non-edited contributions to conferences
Lovell, D. J., Parker, S. R. and Hunter, T. 2001. Understanding epidemics as a basis for developing fungicide strategies. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .
Diseases of rapeseed=canola (B. napus L. and Brassica rapa L. (=B. campestris L.)
G - Articles in popular magazines and other technical publications
Kharbanda, P. D., Fitt, B. D. L., Lange, R. M., West, J. S., Lamey, A. H. and Phillips, D. V. 2001. Diseases of rapeseed=canola (B. napus L. and Brassica rapa L. (=B. campestris L.).
Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe
A - Papers appearing in refereed journals
West, J. S., Kharbanda, P. D., Barbetti, M. J. and Fitt, B. D. L. 2001. Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe. Plant Pathology. 50 (1), pp. 10-27.
Development of phoma lesions on oilseed rape leaves inoculated with ascospores of A-group and B-group Leptosphaeria maculans (stem canker) at different temperatures and wetness durations
A - Papers appearing in refereed journals
Toscano-Underwood, C., West, J. S., Fitt, B. D. L., Todd, A. D. and Jedryczka, M. 2001. Development of phoma lesions on oilseed rape leaves inoculated with ascospores of A-group and B-group Leptosphaeria maculans (stem canker) at different temperatures and wetness durations. Plant Pathology. 50 (1), pp. 28-41.
Forecasting as an aid to control stem canker of winter oilseed rape
G - Articles in popular magazines and other technical publications
West, J. S., Biddulph, J. E., Leech, P. K., Williams, R. H., Fitt, B. D. L. and Gladders, P. 2000. Forecasting as an aid to control stem canker of winter oilseed rape. Blackleg News. December 1999/June 2000.
Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK
A - Papers appearing in refereed journals
West, J. S., Hughes, C. and Fox, R. T. V. 2000. Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK. Plant Pathology. 49 (6), p. 808.
Leptosphaeria maculans causing stem canker of oilseed rape in China
A - Papers appearing in refereed journals
West, J. S., Evans, N., Liu, S., Hu, B. and Peng, L. 2000. Leptosphaeria maculans causing stem canker of oilseed rape in China. Plant Pathology. 49, p. 800.
Spectral filters for the control of Botrytis cinerea
A - Papers appearing in refereed journals
West, J. S., Pearson, S., Hadley, P., Wheldon, A. E., Davis, F. J., Gilbert, A. and Henbest, R. G. C. 2000. Spectral filters for the control of Botrytis cinerea. Annals of Applied Biology. 136, pp. 115-120.
Predicting leaf infection by Leptosphaeria maculans on winter oilseed rape
C1 - Edited contributions to conferences/learned societies
West, J. S., Evans, N., Leech, P. K., Fitt, B. D. L., Welham, S. J., Jedryczka, M. and Penaud, A. 2000. Predicting leaf infection by Leptosphaeria maculans on winter oilseed rape.
Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK
A - Papers appearing in refereed journals
West, J. S., Hughes, C. and Fox, R. T. V. 2000. Armillaria mellea can infect the perennial weed, Rumex obtusifolius , in the UK. New Disease Reports. 1, p. 11.
Leptosphaeria maculans causing stem canker of oilseed rape in China
A - Papers appearing in refereed journals
West, J. S., Liu, S., Evans, N., Hu, B. and Peng, L. 2000. Leptosphaeria maculans causing stem canker of oilseed rape in China. New Disease Reports. 1, p. 3.
Chemical control of Armillaria
B - Book chapters etc edited externally
West, J. S. 2000. Chemical control of Armillaria. in: Fox, R. T. V. (ed.) In Armillaria root rot: biology and control of honey fungus Intercept Ltd Andover, Hampshire England. pp. 173-
The effect of climate on the release of ascospores of Leptosphaeria maculans (stem canker of oilseed rape)
C2 - Non-edited contributions to conferences
West, J. S., Evans, N., Leech, P. K. and Fitt, B. D. L. 1999. The effect of climate on the release of ascospores of Leptosphaeria maculans (stem canker of oilseed rape). Abstracts 9th Conference on Microscopic Fungi - Plant Pathogens and their Metabolites, Poznan, 29 April 1999 .
Leptosphaeria maculans
D1 - Technical reports: non-confidential
Biddulph, J. E. and West, J. S. 1999. Leptosphaeria maculans. Wallingford, Oxon CAB International (CABI).
Optimising the use of fungicides to control stem canker of oilseed rape
C1 - Edited contributions to conferences/learned societies
West, J. S., Leech, P. K., Fitt, B. D. L., Welham, S. J., Penaud, A., Peres, A. and Poisson, B. 1999. Optimising the use of fungicides to control stem canker of oilseed rape. Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .
Yield loss of winter oilseed rape in relation to severity of stem canker (Leptosphaeria maculans ) in the UK
C1 - Edited contributions to conferences/learned societies
Zhou, Y., Fitt, B. D. L., Welham, S. J., Gladders, P., Sansford, C. E. and West, J. S. 1999. Yield loss of winter oilseed rape in relation to severity of stem canker (Leptosphaeria maculans ) in the UK. Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .
Effects of temperature and wetness duration on infection of oilseed rape by ascospores of A-group or B-group Leptosphaeria maculans (stem canker)
C1 - Edited contributions to conferences/learned societies
Biddulph, J. E., Fitt, B. D. L., Jedryczka, M., West, J. S. and Welham, S. J. 1999. Effects of temperature and wetness duration on infection of oilseed rape by ascospores of A-group or B-group Leptosphaeria maculans (stem canker). Proceedings 10th International Rapeseed Congress: New Horizons for an Old Crop, Canberra, 26-29 September 1999. (CD-ROM) .
The influence of wetness and temperature on the release of ascospores of Leptosphaeria maculans (blackleg) from oilseed rape debris
C2 - Non-edited contributions to conferences
Jedryczka, M., Dakowska, S., West, J. S. and Fitt, B. D. L. 1999. The influence of wetness and temperature on the release of ascospores of Leptosphaeria maculans (blackleg) from oilseed rape debris. Materia y z Sympozjum Naukowego Polskiego Towarzystwa Fitopatologicznego: Bioroznorodnosc w Fitopatologii Europejskiej na Przelomie Wiekow, Poznan, 7-9 Wrzesien 1999 . pp. 75
Quantification of rainsplash for improved prediction of Septoria disease risk
C1 - Edited contributions to conferences/learned societies
Lovell, D. J., Parker, S. R., Van Petegheim, P., Webb, D. A. and Welham, S. J. 1999. Quantification of rainsplash for improved prediction of Septoria disease risk. Information Technology for Crop Protection. Aspects of Applied Biology 55 . pp. 7-14
Effects of severity and timing of stem canker (Leptosphaeria maculans ) symptoms on yield of winter oilseed rape (Brasica napus ) in the UK
A - Papers appearing in refereed journals
Zhou, Y., Fitt, B. D. L., Welham, S. J., Gladders, P., Sansford, C. E. and West, J. S. 1999. Effects of severity and timing of stem canker (Leptosphaeria maculans ) symptoms on yield of winter oilseed rape (Brasica napus ) in the UK. European Journal of Plant Pathology. 105, pp. 715-728.
Epidemiology of Leptosphaeria maculans in relation to forecasting stem canker severity on winter oilseed rape in the UK
A - Papers appearing in refereed journals
West, J. S., Biddulph, J. E., Fitt, B. D. L. and Gladders, P. 1999. Epidemiology of Leptosphaeria maculans in relation to forecasting stem canker severity on winter oilseed rape in the UK. Annals of Applied Biology. 135 (2), pp. 535-546.
Conditions for infection of oilseed rape leaves by ascospores of UK (A group) and Polish (B group) Leptosphaeria maculans (stem canker)
G - Articles in popular magazines and other technical publications
Biddulph, J. E., Fitt, B. D. L., Gladders, P., Jedryczka, M., West, J. S. and Welham, S. J. 1999. Conditions for infection of oilseed rape leaves by ascospores of UK (A group) and Polish (B group) Leptosphaeria maculans (stem canker). GCIRC Bulletin. 16, pp. 82-83.
Forecasting and management of light leaf spot and stem canker on winter oilseed rape
C2 - Non-edited contributions to conferences
Fitt, B. D. L., Steed, J. L., Welham, S. J., West, J. S., Gladders, P. and Meakin, P. 1998. Forecasting and management of light leaf spot and stem canker on winter oilseed rape. Abstracts ARIA Meeting, Harpenden, 4 November 1998 .
New insights in the epidemiology of Leptosphaeria maculans ; perspectives for forecasting and control of stem canker of oilseed rape
C2 - Non-edited contributions to conferences
West, J. S., Leech, P. K., Fitt, B. D. L., Penaud, A., Jedryczka, M., Rouxel, T. and Balesdent, M-H. 1998. New insights in the epidemiology of Leptosphaeria maculans ; perspectives for forecasting and control of stem canker of oilseed rape. Abstracts Jean Chevaugeon Rencontres de Mycologie/Phytopathologie, Aussois, 27 September-1 October 1998 .
The effects of rainfall on numbers of air-borne ascospores of Leptosphaeria maculans and the development of phoma leaf lesions on winter oilseed rape
C2 - Non-edited contributions to conferences
West, J. S., Leech, P. K. and Fitt, B. D. L. 1998. The effects of rainfall on numbers of air-borne ascospores of Leptosphaeria maculans and the development of phoma leaf lesions on winter oilseed rape. Abstracts ICPP98 7th International Congress of Plant Pathology, Edinburgh, 9-16 August 1998 . pp. 2.1.7
Leptosphaeria maculans CD-ROM
J - Computer programs
Biddulph, J. and West, J. S. 1998. Leptosphaeria maculans CD-ROM. CABI International, Wallingford, Oxon (CABI).
Permalink - https://repository.rothamsted.ac.uk/item/893z7/exploiting-triticum-monococcum-as-a-source-of-disease-resistance-traits-to-important-uk-fungal-and-viral-pathogens