N - Datasets
Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90
Authors | Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. |
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Abstract | Studying genomic variation in rapidly evolving pathogens potentially enables definition of genes supporting their “core biology” present, functional and expressed by all strains or “flexible biology”, varying between strains. Genes supporting flexible biology may be considered to be “accessory”, whilst the “core” gene set is likely to be important for common features of a pathogen species biology, including virulence on all host genotypes. The wheat-pathogenic fungus Zymoseptoria tritici represents one of the most rapidly evolving threats to global food security and was the focus of this study |
Year of Publication | 2022 |
Publisher | Rothamsted Research |
Digital Object Identifier (DOI) | https://doi.org/10.23637/rothamsted.98q90 |
Keywords | Septoria |
Mycosphaerella graminicola | |
Dothideales | |
Publication process dates | |
Submitted | 2023 |
Funder | Biotechnology and Biological Sciences Research Council |
Related Output | |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282243 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282242 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282241 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282240 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282239 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282238 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282237 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282236 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282234 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282232 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282231 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282230 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282229 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282228 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282227 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282235 |
Has part | https://www.ncbi.nlm.nih.gov/biosample/SAMN31282233 |
Has part | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE222164 |
Funder project or code | BB/J/00426X/1 |
Designing Future Wheat WP2.2 | |
Data files | Copyright license CC BY 4.0 Data type Archive Contents Additional metadata File Access Level Open |
Data collection period | 01 Jan 2016 to end of 31 Dec 2018 |
Geographic coverage | France,Germany,Ireland,Great Britain,Belgium,Spain,Italy,Sweden,Poland,Czech Republic,Slovakia |
Data collection method | Fungal strains isolated from field samples by Syngenta. Genomes sequenced with Illumina short-reads, assembled, annotated and compared. |
Data preparation and processing activities | These are gene functional annotations relating to 17 Zymoseptoria tritici assemblies analysed as a pangenome using PanSeq and submitted to NCBI with the project code PRJNA890236. The assemblies are published with this paper. |
Permalink - https://repository.rothamsted.ac.uk/item/98q90/combined-pangenomics-and-transcriptomics-reveals-core-and-redundant-virulence-processes-in-a-rapidly-evolving-fungal-plant-pathogen