Mutation scanning in wheat by exon capture and next-generation sequencing

King, R., Bird, N., Ramirez-Gonzalez, R., Coghill, J. A., Patil, A., Hassani-Pak, K., Uauy, C. and Phillips, A. L. 2015. Mutation scanning in wheat by exon capture and next-generation sequencing. PLOS ONE. 10, p. e0137549. https://doi.org/10.1371/journal.pone.0137549

Authors	King, R., Bird, N., Ramirez-Gonzalez, R., Coghill, J. A., Patil, A., Hassani-Pak, K., Uauy, C. and Phillips, A. L.
Year of Publication	2015
Journal	PLOS ONE
Journal citation	10, p. e0137549
Digital Object Identifier (DOI)	https://doi.org/10.1371/journal.pone.0137549
Open access	Published as ‘gold’ (paid) open access
Funder	Biotechnology and Biological Sciences Research Council
Funder project or code	Wheat
	[20:20 Wheat] Maximising yield potential of wheat
	Project: 5099
Publisher's version	journal.pone.0137549.PDF
Publisher	Public Library of Science, San Fancisco (PLOS)
	Public Library of Science (PLOS)
ISSN	1932-6203

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An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

A - Papers appearing in refereed journals

Clavijo, B. J., Venturini, L., Schudoma, C., Accinelli, G. G., Kaithakottil, G., Wright, J., Borrill, P., Kettleborough, G., Heavens, D., Chapman, H., Lipscombe, J., Barker, T., Lu, F. H., McKenzie, N., Raats, D., Ramirez-Gonzalez, R. H., Coince, A., Peel, N., Percival-Alwyn, L., Duncan, O., Trosch, J., Yu, G. T., Bolser, D. M., Namaati, G., Kerhornou, A., Spannagl, M., Gundlach, H., Haberer, G., Davey, R. P., Fosker, C., Di Palma, F., Phillips, A. L., Millar, A. H., Kersey, P. J., Uauy, C., Krasileva, K. V., Swarbreck, D., Bevan, M. W. and Clark, M. D. 2017. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Research. 27 (5), pp. 885-896. https://doi.org/10.1101/gr.217117.116

Genome wide analysis of fatty acid desaturation and its response to temperature

A - Papers appearing in refereed journals

Menard, G. N., Martin-Moreno, J., Bryant, F. M., Munoz-Azcarate, O., Kelly, A. A., Hassani-Pak, K., Kurup, S. and Eastmond, P. J. 2017. Genome wide analysis of fatty acid desaturation and its response to temperature. Plant Physiology. 173 (3), pp. 1594-1605. https://doi.org/10.1104/pp.16.01907

Uncovering hidden variation in polyploid wheat

A - Papers appearing in refereed journals

Krasileva, K. V., Vasquez-Gross, H. A., Howell, T., Bailey, P., Paraiso, F., Clissold, L., Simmonds, J., Ramirez-Gonzalez, R. H., Wang, X. D., Borrill, P., Fosker, C., Ayling, S., Phillips, A. L., Uauy, C. and Dubcovsky, J. 2017. Uncovering hidden variation in polyploid wheat. Proceedings of the National Academy of Sciences. 114 (6), pp. E913-E921. https://doi.org/10.1073/pnas.1619268114

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

A - Papers appearing in refereed journals

Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3). https://doi.org/10.1111/pbi.12631

Annotation of Fusarium graminearum (PH-1) version 5.0

A - Papers appearing in refereed journals

King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16. https://doi.org/10.1128/genomeA.01479-16

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

A - Papers appearing in refereed journals

King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672

KnetMiner - An integrated data platform for gene mining and biological knowledge discovery

F - Theses

Hassani-Pak, K. 2017. KnetMiner - An integrated data platform for gene mining and biological knowledge discovery. F - Theses Rothamsted Research Computational and Analytical Sciences

Genetic control of gibberellin metabolism and signalling in crop improvement

B - Book chapters etc edited externally

Phillips, A. L. 2016. Genetic control of gibberellin metabolism and signalling in crop improvement. in: Hedden, P. and Thomas, S. G. (ed.) Annual Plant Reviews, Volume 49: Gibberellins, The (Chapter 13) Wiley.

Developing integrated crop knowledge networks to advance candidate gene discovery

A - Papers appearing in refereed journals

Hassani-Pak, K., Castellote, M., Esch, M., Hindle, M. M., Lysenko, A., Taubert, J. and Rawlings, C. J. 2016. Developing integrated crop knowledge networks to advance candidate gene discovery. Applied and Translational Genomics. 11 (December), pp. 18-26. https://doi.org/10.1016/j.atg.2016.10.003

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

A detailed curation of the Zymoseptoria tritici IPO323 gene annotation

C2 - Non-edited contributions to conferences

King, R., Rudd, J. J. and Kanyuka, K. 2016. A detailed curation of the Zymoseptoria tritici IPO323 gene annotation. Abstracts 9th International Symposium on Septoria Diseases of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. P0927

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants

C2 - Non-edited contributions to conferences

Kettles, G. J., King, R., Hooper, J., Skinner, W., Hargreaves, J., Kanyuka, K., Fraaije, B. A. and Rudd, J. J. 2016. Effector biology of Zymoseptoria tritici during interactions with wheat and with non-host plants. IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number S6-3

First draft genome sequence of a UK strain (UK99) of Fusarium culmorum

A - Papers appearing in refereed journals

Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16. https://doi.org/10.1128/genomeA.00771-16

Insecticide resistance mediated by an exon skipping event.

A - Papers appearing in refereed journals

Berger, M., Puinean, A. M., Randall, E., Zimmer, C. T., Silva, W. M., Bielza, P., Field, L. M., Hughes, D. J., Mellor, I., Hassani-Pak, K., Siqueira, H. A. A., Williamson, M. S. and Bass, C. 2016. Insecticide resistance mediated by an exon skipping event. Molecular Ecology. 25 (22), pp. 5692-5704. https://doi.org/10.1111/mec.13882

Dioxygenase-encoding AtDAO1 gene controls IAA oxidation and homeostasis in Arabidopsis

A - Papers appearing in refereed journals

Porco, S., Pencik, A., Rashed, A., Voss, U., Casanova-Saez, R., Bishopp, A., Golebiowska, A., Bhosale, R., Swarup, R., Swarup, K., Penakova, P., Novak, O., Staswick, P., Hedden, P., Phillips, A. L., Vissenberg, K., Bennett, M. J. and Ljung, K. 2016. Dioxygenase-encoding AtDAO1 gene controls IAA oxidation and homeostasis in Arabidopsis. Proceedings of the National Academy of Sciences. 113 (39), pp. 11016-11021. https://doi.org/10.1073/pnas.1604375113

Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison

A - Papers appearing in refereed journals

Jones, F. P., Clark, I. M., King, R., Shaw, L. J., Woodward, M. J. and Hirsch, P. R. 2016. Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. Scientific Reports. 6, p. 25858. https://doi.org/10.1038/srep25858

Deep roots and soil structure

A - Papers appearing in refereed journals

Gao, W., Hodgkinson, L., Jin, K., Watts, C. W., Ashton, R. W., Shen, J., Ren, T., Dodd, I. C., Binley, A., Phillips, A. L., Hedden, P., Hawkesford, M. J. and Whalley, W. R. 2016. Deep roots and soil structure. Plant, Cell and Environment. 39 (8), pp. 1662-1668. https://doi.org/10.1111/pce.12684

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

C2 - Non-edited contributions to conferences

Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Gibberellin metabolism

B - Book chapters etc edited externally

Hedden, P. and Phillips, A. L. 2015. Gibberellin metabolism. in: Hausinger, R. P. and Schofield, C. J. (ed.) 2-Oxoglutarate-dependent oxygenases Royal Society of Chemistry (RSC), Cambridge. pp. 367-384

Resequencing at >40-fold depth of the parental genomes of a Solanum lycopersicum x S. pimpinellifolium recombinant inbred line population and characterization of frame-shift InDels that are highly likely to perturb protein function

A - Papers appearing in refereed journals

Kevei, Z., King, R., Mohareb, F., Sergeant, M. J., Awan, S. Z. and Thompson, A. J. 2015. Resequencing at >40-fold depth of the parental genomes of a Solanum lycopersicum x S. pimpinellifolium recombinant inbred line population and characterization of frame-shift InDels that are highly likely to perturb protein function. G3: Genes, Genomes, Genetics. 5, pp. 971-981. https://doi.org/10.1534/g3.114.016121

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

A - Papers appearing in refereed journals

King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544. https://doi.org/10.1186/s12864-015-1756-1

Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family

A - Papers appearing in refereed journals

Pearce, S., Huttly, A. K., Prosser, I. M., Li, Y-D., Vaughan, S. P., Gallova, B., Patil, A., Coghill, J. A., Dubcovsky, J., Hedden, P. and Phillips, A. L. 2015. Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family. BMC Plant Biology. 15, p. 130. https://doi.org/10.1186/s12870-015-0520-7

The effect of impedance to root growth on plant architecture in wheat

A - Papers appearing in refereed journals

Jin, K., Shen, J., Ashton, R. W., White, Robin P., Dodd, I. C., Phillips, A. L., Parry, M. A. J. and Whalley, W. R. 2015. The effect of impedance to root growth on plant architecture in wheat. Plant and Soil. 392, pp. 323-332. https://doi.org/10.1007/s11104-015-2462-0

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions

A - Papers appearing in refereed journals

Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261. https://doi.org/10.1186/s12864-015-1412-9

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition

A - Papers appearing in refereed journals

Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927

A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences

C2 - Non-edited contributions to conferences

Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069

Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction

C2 - Non-edited contributions to conferences

Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .

A query suggestion workflow for life science IR-systems

A - Papers appearing in refereed journals

Esch, M., Chen, J., Weise, S., Hassani-Pak, K., Scholz, U. and Lange, M. 2014. A query suggestion workflow for life science IR-systems. Journal of Integrative Bioinformatics. 11, p. 237. https://doi.org/10.2390/biecoll-jib-2014-237

Progress in TILLING as a tool for functional genomics and improvement of crops

A - Papers appearing in refereed journals

Chen, L., Hao, L., Parry, M. A. J., Phillips, A. L. and Hu, Y-G. 2014. Progress in TILLING as a tool for functional genomics and improvement of crops. Journal of Integrative Plant Biology. 56 (5), pp. 425-443. https://doi.org/10.1111/jipb.12192

Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems

A - Papers appearing in refereed journals

Wan, Y., Gritsch, C., Tryfona, T., Ray, M. J., Andongabo, A. E., Hassani-Pak, K., Jones, H. D., Dupree, P., Karp, A., Shewry, P. R. and Mitchell, R. A. C. 2014. Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems. Planta. 239, pp. 1041-1053. https://doi.org/10.1007/s00425-014-2034-1

DELLA activity is required for successful pollen development in the Columbia ecotype of Arabidopsis

A - Papers appearing in refereed journals

Plackett, A. R. G., Ferguson, A. C., Powers, S. J., Wanchoo-Kohli, A., Phillips, A. L., Wilson, Z. A., Hedden, P. and Thomas, S. G. 2014. DELLA activity is required for successful pollen development in the Columbia ecotype of Arabidopsis. New Phytologist. 201 (3), pp. 825-836. https://doi.org/10.1111/nph.12571

The role of gibberellin signalling in plant responses to abiotic stress

A - Papers appearing in refereed journals

Colebrook, E. H., Thomas, S. G., Phillips, A. L. and Hedden, P. 2014. The role of gibberellin signalling in plant responses to abiotic stress. Journal Of Experimental Biology. 217, pp. 67-75. https://doi.org/10.1242/jeb.089938

Ondex Web: web-based visualization and exploration of heterogeneous biological networks

A - Papers appearing in refereed journals

Taubert, J., Hassani-Pak, K., Castells-Brooke, N. I. D. and Rawlings, C. J. 2014. Ondex Web: web-based visualization and exploration of heterogeneous biological networks. Bioinformatics. 30, pp. 1034-1035. https://doi.org/10.1093/bioinformatics/btt740

Isolation and characterization of ERECTA genes and their expression patterns in common wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals

Huang, L., Yasir, T. A., Phillips, A. L. and Hu, Y-G. 2013. Isolation and characterization of ERECTA genes and their expression patterns in common wheat (Triticum aestivum L.). Australian Journal of Crop Science. 7 (3), pp. 381-390.

The involvement of gibberellin signalling in the effect of soil resistance to root penetration on leaf elongation and tiller number in wheat

A - Papers appearing in refereed journals

Coelho Filho, M. A., Colebrook, E. H., Lloyd, D. P. A., Webster, C. P., Mooney, S. J., Phillips, A. L., Hedden, P. and Whalley, W. R. 2013. The involvement of gibberellin signalling in the effect of soil resistance to root penetration on leaf elongation and tiller number in wheat. Plant and Soil. 371, pp. 81-94. https://doi.org/10.1007/s11104-013-1662-8

GA-responsive dwarfing gene Rht12 affects the developmental and agronomic traits in common bread wheat

A - Papers appearing in refereed journals

Chen, L., Phillips, A. L., Condon, A. G., Parry, M. A. J. and Hu, Y-G. 2013. GA-responsive dwarfing gene Rht12 affects the developmental and agronomic traits in common bread wheat. PLOS ONE. 8, p. e62285. https://doi.org/10.1371/journal.pone.0062285

Genotypic variation in the ability of wheat roots to penetrate wax layers

A - Papers appearing in refereed journals

Whalley, W. R., Dodd, I. C., Watts, C. W., Webster, C. P., Phillips, A. L., Andralojc, P. J., White, Robin P., Davies, W. J. and Parry, M. A. J. 2013. Genotypic variation in the ability of wheat roots to penetrate wax layers. Plant and Soil. 364, pp. 171-179. https://doi.org/10.1007/s11104-012-1342-0

Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals

Chen, L., Huang, L., Min, D., Phillips, A. L., Wang, S., Madgwick, P. J., Parry, M. A. J. and Hu, Y-G. 2012. Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.). PLOS ONE. 7, p. e41570 (11pp). https://doi.org/10.1371/journal.pone.0041570

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

A - Papers appearing in refereed journals

Middleton, A. M., Ubeda-Tomas, S., Griffiths, J., Holman, T., Hedden, P., Thomas, S. G., Phillips, A. L., Holdsworthy, M. J., Bennett, M. J., King, J. R. and Owen, M. R. 2012. Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proceedings of the National Academy of Sciences. 109, pp. 7571-7576. https://doi.org/10.1073/pnas.1113666109

Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth

A - Papers appearing in refereed journals

Bhattacharya, A., Kourmpetli, S., Ward, D. A., Thomas, S. G., Gong, F., Powers, S. J., Carrera, E., Taylor, B., Nunez De Caceres Gonzalez, F., Tudzynski, B., Phillips, A. L., Davey, M. R. and Hedden, P. 2012. Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth. Plant Physiology. 160, pp. 837-845. https://doi.org/10.1104/pp.112.201756

Improving wheat health benefits through manipulation of starch composition

C1 - Edited contributions to conferences/learned societies

Lafiandra, D., Sestili, F., Botticella, E. and Phillips, A. L. 2012. Improving wheat health benefits through manipulation of starch composition. Lang, L. and Bedo, Z. (ed.) Plant Breeding for Future Generations: Proceedings 19th EUCARPIA General Congress, Budapest, 21-24 May 2012 . Agricultural Institute, Martonvasar. pp. 180-183

Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs

A - Papers appearing in refereed journals

Plackett, A. R. G., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G. and Hedden, P. 2012. Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs. The Plant Cell. 24, pp. 941-960. https://doi.org/10.1105/tpc.111.095109

Engineering gibberellin metabolism in Solanum nigrum L. by ectopic expression of gibberellin oxidase genes

A - Papers appearing in refereed journals

Bhattacharya, A., Ward, D. A., Hedden, P., Phillips, A. L., Power, J. B. and Davey, M. R. 2012. Engineering gibberellin metabolism in Solanum nigrum L. by ectopic expression of gibberellin oxidase genes. Plant Cell Reports. 31, pp. 945-953. https://doi.org/10.1007/s00299-011-1214-8

Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits

C1 - Edited contributions to conferences/learned societies

Defoin-Platel, M., Hassani-Pak, K. and Rawlings, C. J. 2011. Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits. Systems Approaches to Crop Improvement. Aspects of Applied Biology 107 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 79-87

The role of gibberellin in determining wheat grain size and quality

C2 - Non-edited contributions to conferences

Vaughan, S. P., Wanchoo-Kohli, A., Patil, A., Huttly, A. K., Phillips, A. L. and Hedden, P. 2011. The role of gibberellin in determining wheat grain size and quality. ABRATES.

The genetics and biochemistry of wheat grain colour

C2 - Non-edited contributions to conferences

Vaughan, S. P., Baker, J., Ward, J. L., Huttly, A. K. and Phillips, A. L. 2011. The genetics and biochemistry of wheat grain colour. ABRATES.

The role of gibberellin in determining wheat grain size and quality

C1 - Edited contributions to conferences/learned societies

Vaughan, S. P., Wanchoo-Kohli, A., Patil, A., Huttly, A. K., Phillips, A. L. and Hedden, P. 2011. The role of gibberellin in determining wheat grain size and quality. GM Crops: from Basic Research to Application. Aspects of Applied Biology 110 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 14

Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat

A - Papers appearing in refereed journals

Pearce, S., Saville, R., Vaughan, S. P., Chandler, P. M., Wilhelm, E. P., Sparks, C. A., Al-Kaff, N., Korolev, A., Boulton, M. I., Phillips, A. L., Hedden, P., Nicholson, P. and Thomas, S. G. 2011. Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat. Plant Physiology. 157, pp. 1820-1831. https://doi.org/10.1104/pp.111.183657

High resolution melting analysis for the detection of EMS induced mutations in wheat SBEIIa genes

A - Papers appearing in refereed journals

Botticella, E., Sestili, F., Hernandez-Lopez, A., Phillips, A. L. and Lafiandra, D. 2011. High resolution melting analysis for the detection of EMS induced mutations in wheat SBEIIa genes. BMC Plant Biology. 11, p. 156. https://doi.org/10.1186/1471-2229-11-156

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

A - Papers appearing in refereed journals

Lysenko, A., Defoin-Platel, M., Hassani-Pak, K., Taubert, J., Hodgman, C., Rawlings, C. J. and Saqi, M. 2011. Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics. 12, p. 203 (14pp). https://doi.org/10.1186/1471-2105-12-203

Gibberellin signalling - new opportunities for crop management

G - Articles in popular magazines and other technical publications

Hedden, P., Rademacher, W. and Phillips, A. L. 2010. Gibberellin signalling - new opportunities for crop management. Outlooks on Pest Management. 21 (6), pp. 268-273. https://doi.org/10.1564/21Dec05

TILLING as a method for improving durum wheat

C1 - Edited contributions to conferences/learned societies

Madgwick, P. J., Baudo, M., Phillips, A. L., Habash, D. Z., Ouabbou, H., Labhili, M., Tuberosa, R., Bort, J., Hamada, W., Al-Yassin, A. and Parry, M. A. J. 2010. TILLING as a method for improving durum wheat. Water and nitrogen use efficiency in plants and crops. Aspects of Applied Biology 105 . pp. 257-260

Gibberellin 3-oxidases in developing embryos of the southern wild cucumber, Marah macrocarpus

A - Papers appearing in refereed journals

Ward, D. A., Macmillan, J., Gong, F., Phillips, A. L. and Hedden, P. 2010. Gibberellin 3-oxidases in developing embryos of the southern wild cucumber, Marah macrocarpus. Phytochemistry. 71, pp. 2010-2018. https://doi.org/10.1016/j.phytochem.2010.09.015

Diversity of agronomic and morphological traits in a mutant population of bread wheat studied in the Healthgrain program

A - Papers appearing in refereed journals

Rakszegi, M., Kisgyorgy, B. N., Tearall, K., Shewry, P. R., Lang, L., Phillips, A. L. and Bedo, Z. 2010. Diversity of agronomic and morphological traits in a mutant population of bread wheat studied in the Healthgrain program. Euphytica. 174, pp. 409-421. https://doi.org/10.1007/s10681-010-0149-4

Enhancing data integration with text analysis to find proteins implicated in plant stress response

A - Papers appearing in refereed journals

Hassani-Pak, K., Legaie, R., Canevet, C., Van Den Berg, H. A., Moore, J. D. and Rawlings, C. J. 2010. Enhancing data integration with text analysis to find proteins implicated in plant stress response. Journal of Integrative Bioinformatics. 7, p. 121 (13pp). https://doi.org/10.2390/biecoll-jib-2010-121

Production of novel allelic variation for genes involved in starch biosynthesis through mutagenesis

A - Papers appearing in refereed journals

Sestili, F., Botticella, E., Bedo, Z., Phillips, A. L. and Lafiandra, D. 2010. Production of novel allelic variation for genes involved in starch biosynthesis through mutagenesis. Molecular Breeding. 25, pp. 145-154. https://doi.org/10.1007/s11032-009-9314-7

Combining bioactive components with conventional targets in plant breeding programmes

B - Book chapters etc edited externally

Bedo, Z., Rakszegi, M., Lang, L., Gebruers, K., Piironen, V., Lafiandra, D. and Phillips, A. L. 2010. Combining bioactive components with conventional targets in plant breeding programmes. in: Shewry, P. R. and Ward, J. L. (ed.) HEALTHGRAIN methods: analysis of bioactive components in small grain cereals American Association of Cereal Chemists (AACC), St Paul, MN. pp. 263-272

Mutation discovery for crop improvement

A - Papers appearing in refereed journals

Parry, M. A. J., Madgwick, P. J., Bayon, C., Tearall, K., Hernandez-Lopez, A., Baudo, M., Rakszegi, M., Hamada, W., Al-Yassin, A., Ouabbou, H., Labhilili, M. and Phillips, A. L. 2009. Mutation discovery for crop improvement. Journal of Experimental Botany. 60 (10), pp. 2817-2825. https://doi.org/10.1093/jxb/erp189

Modification of gibberellin signalling (metabolism and signal transduction) in sugar beet: analysis of potential targets for crop improvement

A - Papers appearing in refereed journals

Mutasa-Göttgens, E. S., Qi, A., Mathews, A. M., Thomas, S. G., Phillips, A. L. and Hedden, P. 2009. Modification of gibberellin signalling (metabolism and signal transduction) in sugar beet: analysis of potential targets for crop improvement. Transgenic Research. 18, pp. 301-308. https://doi.org/10.1007/s11248-008-9211-6

TILLING for improved crop performance under stress conditions

C1 - Edited contributions to conferences/learned societies

Parry, M. A. J., Madgwick, P. J., Bayon, C., Habash, D., Baudo, M., Tuberosa, R., Bort, J., Ben Haj Salah, H., Slafer, G., Al-Yassin, A., Ouabbou, H., Labihili, M., Natchit, M. and Phillips, A. L. 2008. TILLING for improved crop performance under stress conditions. Effects of Climate Change on Plants: Implications for Agriculture. Aspects of Applied Biology 88 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 111

Improving wheat for nutrition and processing

C1 - Edited contributions to conferences/learned societies

Shewry, P. R., Wan, Y., Wheeler, T., Gooding, M., Poole, R., Edwards, K. J., Mills, E. N. C., Skeggs, P., Gezan, S., Welham, S. J., Shenton, C., Zhu, T., Phillips, A. L., Jones, H. D., Li, L., Ward, J. L., Freeman, J., Nemeth, C. and Mitchell, R. A. C. 2008. Improving wheat for nutrition and processing. Molinacano, J. L. (ed.) Cereal Science and Technology for Feeding Ten Billion People: Genomics Era and Beyond. Proceedings of the Meeting of the Eucarpia Cereal Section, Lleida (Spain), 13-17 November 2006 . Options Mediterraneennes, Series A, No 81. pp. 249-252

Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis

A - Papers appearing in refereed journals

Rieu, I., Eriksson, S., Powers, S. J., Gong, F., Griffiths, J., Woolley, L., Benlloch, R., Nilsson, O., Thomas, S. G., Hedden, P. and Phillips, A. L. 2008. Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis. The Plant Cell. 20, pp. 2420-2436. https://doi.org/10.1105/tpc.108.058818

Reduced gibberellin response affects ethylene biosynthesis and responsiveness in the Arabidopsis gai eto2-1 double mutant

A - Papers appearing in refereed journals

De Grauwe, L., Chaerle, L., Dugardeyn, J., Decat, J., Rieu, I., Vriezen, W. H., Moritz, T., Beemster, G. T. S., Phillips, A. L., Harberd, N. P., Hedden, P. and Van Der Straeten, D. 2008. Reduced gibberellin response affects ethylene biosynthesis and responsiveness in the Arabidopsis gai eto2-1 double mutant. New Phytologist. 177 (2), pp. 128-141. https://doi.org/10.1111/j.1469-8137.2007.02263.x

Graph-based sequence annotation using a data integration approach

A - Papers appearing in refereed journals

Pesch, R., Lysenko, A., Hindle, M. M., Hassani-Pak, K., Thiele, R., Rawlings, C. J., Kohler, J. and Taubert, J. 2008. Graph-based sequence annotation using a data integration approach. Journal of Integrative Bioinformatics. 5(2):94, p. 15pp. https://doi.org/10.2390/biecoll-jib-2008-94

Growth hormones for increased wheat yield?

G - Articles in popular magazines and other technical publications

Phillips, A. L. 2008. Growth hormones for increased wheat yield? RRA Newsletter. 26, p. 4.

The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis lifecycle

A - Papers appearing in refereed journals

Rieu, I., Ruiz-Rivero, O., Fernandez-Garcia, N., Griffiths, J., Powers, S. J., Gong, F., Linhartova, T., Eriksson, S., Nilsson, O., Thomas, S. G., Phillips, A. L. and Hedden, P. 2008. The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis lifecycle. The Plant Journal. 53 (3), pp. 488-504. https://doi.org/10.1111/j.1365-313X.2007.03356.x

Over-expression of a gibberellin 2-oxidase gene from Phaseolus coccineus L. enhances gibberellin inactivation and induces dwarfism in Solanum species

A - Papers appearing in refereed journals

Dijkstra, C., Adams, E., Bhattacharya, A., Page, A. F., Anthony, P., Kourmpetli, S., Power, J. B., Lowe, K. C., Thomas, S. G., Hedden, P., Phillips, A. L. and Davey, M. R. 2008. Over-expression of a gibberellin 2-oxidase gene from Phaseolus coccineus L. enhances gibberellin inactivation and induces dwarfism in Solanum species. Plant Cell Reports. 27, pp. 463-470. https://doi.org/10.1007/s00299-007-0471-z

Genetic modification of plant stature by manipulation of gibberellin metabolism: an alternative to chemical growth regulators

C2 - Non-edited contributions to conferences

Bhattacharya, A., Davey, M., Power, B., Ward, D. A., Phillips, A. L. and Hedden, P. 2007. Genetic modification of plant stature by manipulation of gibberellin metabolism: an alternative to chemical growth regulators. https://doi.org/10.1016/j.cbpa.2007.01.623

Ethylene-induced Arabidopsis hypocotyl elongation is dependent on but not mediated by gibberellins

A - Papers appearing in refereed journals

Vandenbussche, F., Vancompernolle, B., Rieu, I., Ahmad, M., Phillips, A. L., Moritz, T., Hedden, P. and Van Der Straeten, D. 2007. Ethylene-induced Arabidopsis hypocotyl elongation is dependent on but not mediated by gibberellins. Journal of Experimental Botany. 58, pp. 4269-4281. https://doi.org/10.1093/jxb/erm288

Triticum monococcum as a reference species for wheat genetics and genomics

C2 - Non-edited contributions to conferences

Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

Decreased shoot stature and grain alpha-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat

A - Papers appearing in refereed journals

Appleford, N. E., Wilkinson, M. D., Ma, Q., Evans, D. J., Stone, M. C., Pearce, S. P., Powers, S. J., Thomas, S. G., Jones, H. D., Phillips, A. L., Hedden, P. and Lenton, J. R. 2007. Decreased shoot stature and grain alpha-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat. Journal of Experimental Botany. 58, pp. 3213-3226. https://doi.org/10.1093/jxb/erm166

Reciprocal influence of ethylene and gibberellins on response-gene expression in Arabadopsis thaliana

A - Papers appearing in refereed journals

De Grauwe, L., Vriezen, W. H., Bertrand, S., Phillips, A. L., Vidal, A. M., Hedden, P. and Van Der Straeten, D. 2007. Reciprocal influence of ethylene and gibberellins on response-gene expression in Arabadopsis thaliana. Planta. 226, pp. 485-498. https://doi.org/10.1007/s00425-007-0499-x

Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis

A - Papers appearing in refereed journals

Griffiths, J., Murase, K., Rieu, I., Zentella, R., Zhang, Z-L., Powers, S. J., Gong, F., Phillips, A. L., Hedden, P., Sun, T-P. and Thomas, S. G. 2006. Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. The Plant Cell. 18 (12), pp. 3399-3414. https://doi.org/10.1105/tpc.106.047415

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

G - Articles in popular magazines and other technical publications

Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.

Forward genetics for gene discovery in wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22

Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis

A - Papers appearing in refereed journals

Frigerio, M., Alabadi, D., Perez-Gomez, J., Garcia-Carcel, L., Phillips, A. L., Hedden, P. and Blazquez, M. A. 2006. Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis. Plant Physiology. 142, pp. 553-563. https://doi.org/10.1104/pp.106.084871

Cloning and functional characterisation of a cis -muuroladiene synthase from black peppermint (Mentha x piperita) and direct evidence for a chemotype unable to synthesise farnesene

A - Papers appearing in refereed journals

Prosser, I. M., Adams, R. J., Beale, M. H., Hawkins, N. D., Phillips, A. L., Pickett, J. A. and Field, L. M. 2006. Cloning and functional characterisation of a cis -muuroladiene synthase from black peppermint (Mentha x piperita) and direct evidence for a chemotype unable to synthesise farnesene. Phytochemistry. 67, pp. 1564-1571. https://doi.org/10.1016/j.phytochem.2005.06.012

Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior

A - Papers appearing in refereed journals

Beale, M. H., Birkett, M. A., Bruce, T. J. A., Chamberlain, K., Field, L. M., Huttly, A. K., Martin, J. L., Parker, R., Phillips, A. L., Pickett, J. A., Prosser, I. M., Shewry, P. R., Smart, L. E., Wadhams, L. J., Woodcock, C. M. and Zhang, Y. 2006. Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior. Proceedings of the National Academy of Sciences. 103, pp. 10509-10513. https://doi.org/10.1073/pnas.0603998103

Function and transcript analysis of gibberellin-biosynthetic enzymes in wheat

A - Papers appearing in refereed journals

Appleford, N. E. J., Evans, D. J., Lenton, J. R., Gaskin, P., Croker, S. J., Devos, K. M., Phillips, A. L. and Hedden, P. 2006. Function and transcript analysis of gibberellin-biosynthetic enzymes in wheat. Planta. 223, pp. 568-582. https://doi.org/10.1007/s00425-005-0104-0

New approaches for durable disease resistance in wheat

C1 - Edited contributions to conferences/learned societies

Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970

Purification and kinetic studies of recombinant gibberellin dioxygenases

A - Papers appearing in refereed journals

Lester, D. R., Phillips, A. L., Hedden, P. and Andersson, I. 2005. Purification and kinetic studies of recombinant gibberellin dioxygenases. BMC Plant Biology. 5:19. https://doi.org/10.1186/1471-2229-5-19

Modification of gibberellin biosynthesis in the grafted apple scion allows control of tree height independent of the rootstock

A - Papers appearing in refereed journals

Bulley, S. M., Wilson, F. M., Hedden, P., Phillips, A. L., Croker, S. J. and James, D. J. 2005. Modification of gibberellin biosynthesis in the grafted apple scion allows control of tree height independent of the rootstock. Plant Biotechnology Journal. 3 (2), pp. 215-223. https://doi.org/10.1111/j.1467-7652.2005.00119.x

The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis

A - Papers appearing in refereed journals

Desgagne-Penix, I., Eakanunkul, S., Coles, J. P., Phillips, A. L., Hedden, P. and Sponsel, V. 2005. The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis. The Plant Journal. 41 (2), pp. 231-242. https://doi.org/10.1111/j.1365-313X.2004.02287.x

Genetic and transgenic approaches to improving crop performance

B - Book chapters etc edited externally

Phillips, A. L. 2004. Genetic and transgenic approaches to improving crop performance. in: Davies, P. J. (ed.) Plant hormones - biosynthesis, signal transduction, action! 3rd ed. Kluwer Academic Publishers, Dordrecht, Netherlands. pp. 582-609

Reduced stature plants (Patent application)

H2 - Patents applied for

Phillips, A. L., Hedden, P., Bulley, S. M. W. and James, D. J. 2004. Reduced stature plants (Patent application).

Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid-biosynthesis aspartate-rich motif

A - Papers appearing in refereed journals

Prosser, I., Altug, I. G., Phillips, A. L., Konig, W. A., Bouwmeester, H. J. and Beale, M. H. 2004. Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid-biosynthesis aspartate-rich motif. Archives of Biochemistry and Biophysics. 432 (2), pp. 136-144. https://doi.org/10.1016/j.abb.2004.06.030

Production and characterization of transgenic wheat with altered gibberellin catabolism

C2 - Non-edited contributions to conferences

Evans, D. J., Stone, M., Appleford, N. E. J., Wilkinson, M. D., Jones, H. D., Ma, Q., Croker, S. J., Phillips, A. L., Hedden, P. and Lenton, J. R. 2003. Production and characterization of transgenic wheat with altered gibberellin catabolism.

Controlling stature in apple trees by genetic modification of gibberellin biosynthesis

C2 - Non-edited contributions to conferences

Bulley, S. M. W., James, D. J., Phillips, A. L. and Hedden, P. 2003. Controlling stature in apple trees by genetic modification of gibberellin biosynthesis.

Molecular characterisation of the GA 20-oxidase-1 promoter from Arabidopsis : identification of cis-elements that mediate control of gene expression by gibberellins

C2 - Non-edited contributions to conferences

Ruiz, O., Coles, J., Hedden, P. and Phillips, A. L. 2003. Molecular characterisation of the GA 20-oxidase-1 promoter from Arabidopsis : identification of cis-elements that mediate control of gene expression by gibberellins.

Interactions between plant hormone signalling and gibberellin biosynthesis

C2 - Non-edited contributions to conferences

Clark, N. R., Coles, J. P., Ruiz, O., Hedden, P. and Phillips, A. L. 2003. Interactions between plant hormone signalling and gibberellin biosynthesis.

New approach to achieve tissue-specific transgene expression in plants

C2 - Non-edited contributions to conferences

Roden, L. C., Phillips, A. L., Hedden, P. and Mutasa-Göttgens, E. S. 2002. New approach to achieve tissue-specific transgene expression in plants. Abstracts 10th Plant, Animal and Microbe Genomes Conference, San Diego, 12-16 January 2002 .

The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans

A - Papers appearing in refereed journals

Hay, A., Kaur, H., Phillips, A. L., Hedden, P., Hake, S. and Tsiantis, M. 2002. The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans. Current Biology. 12, pp. 1557-1565. https://doi.org/10.1016/S0960-9822(02)01125-9

(+)-(10R )-germacrene A synthase from goldenrod, Solidago canadensis ; cDNA isolation, bacterial expression and functional analysis

A - Papers appearing in refereed journals

Prosser, I. M., Phillips, A. L., Gittings, S., Lewis, M. J., Hooper, A. M., Pickett, J. A. and Beale, M. H. 2002. (+)-(10R )-germacrene A synthase from goldenrod, Solidago canadensis ; cDNA isolation, bacterial expression and functional analysis. Phytochemistry. 60, pp. 691-702.

Probing the mechanism of loss of carbon-20 in gibberellin biosynthesis. Synthesis of gibberellin 3alpha,20-hemiacetal and 19,20-lactol analogues and their metabolism by a recombinant GA 20-oxidase

A - Papers appearing in refereed journals

Ward, J. L., Gaskin, P., Brown, R. G. S., Jackson, G. S., Hedden, P., Phillips, A. L., Willis, C. L. and Beale, M. H. 2002. Probing the mechanism of loss of carbon-20 in gibberellin biosynthesis. Synthesis of gibberellin 3alpha,20-hemiacetal and 19,20-lactol analogues and their metabolism by a recombinant GA 20-oxidase. Journal of the Chemical Society-Perkin Transactions 1. 2002, pp. 232-241.

The use of 15N to trace plant uptake of labelled dairy slurry injected into the soil: influence of the new nitrification inhibitor, DMPP

C2 - Non-edited contributions to conferences

Hatch, D. J., Chadwick, D. R., Bol, R. and King, R. 2002. The use of 15N to trace plant uptake of labelled dairy slurry injected into the soil: influence of the new nitrification inhibitor, DMPP. Annual Meeting of the Stable Isotope Mass Spectrometry Users Group, Belfast, UK, 17-18 January 2002.

Gibberellin Biosynthesis in Plants and Fungi: A Case of Convergent Evolution?

A - Papers appearing in refereed journals

Hedden, P., Phillips, A. L., Rojas, M. C., Carrera, E. and Tudzynski, B. 2001. Gibberellin Biosynthesis in Plants and Fungi: A Case of Convergent Evolution? Journal of Plant Growth Regulation. 20 (4), pp. 319-331. https://doi.org/10.1007/s003440010037

Nitrous oxide emission after injection of 15N labelled dairy slurry injected into soil

C2 - Non-edited contributions to conferences

Bol, R., Dittert, K., King, R., Chadwick, D. R. and Hatch, D. J. 2001. Nitrous oxide emission after injection of 15N labelled dairy slurry injected into soil. Abstract SIMSUG 2001. Annual Meeting of the Stable Isotope Mass Spectrometry Users' Group, Glasgow, UK, January 2001.

Hormone Engineering in Plants [La manipulation des hormones chez les plantes]

G - Articles in popular magazines and other technical publications

Hedden, P. and Phillips, A. L. 2000. Hormone Engineering in Plants [La manipulation des hormones chez les plantes]. Biofutur. 204, pp. 46-48. https://doi.org/10.1016/S0294-3506(00)80170-2

Gibberellin metabolism: new insights revealed by the genes

A - Papers appearing in refereed journals

Hedden, P. and Phillips, A. L. 2000. Gibberellin metabolism: new insights revealed by the genes. Trends in Plant Science. 5 (12), pp. 523-530. https://doi.org/10.1016/s1360-1385(00)01790-8

Manipulation of hormone biosynthetic genes in transgenic plants

A - Papers appearing in refereed journals

Hedden, P. and Phillips, A. L. 2000. Manipulation of hormone biosynthetic genes in transgenic plants. Current Opinion in Biotechnology. 11, pp. 130-137.

Transformation and characterization of transgenic plants of Solanum dulcamara L. - incidence of transgene silencing

A - Papers appearing in refereed journals

Curtis, I. S., Power, J. B., Hedden, P., Phillips, A. L., Lowe, K. C., Ward, D. A. and Davey, M. R. 2000. Transformation and characterization of transgenic plants of Solanum dulcamara L. - incidence of transgene silencing. Annals of Botany. 86, pp. 63-71.

Induction of dwarfism in transgenic Solanum dulcamara by over-expression of a gibberellin 20-oxidase cDNA from pumpkin

A - Papers appearing in refereed journals

Curtis, I. S., Ward, D. A., Thomas, S. G., Phillips, A. L., Davey, M. R., Power, J. B., Lowe, K. C., Croker, S. J., Lewis, M. J., Magness, S. L. and Hedden, P. 2000. Induction of dwarfism in transgenic Solanum dulcamara by over-expression of a gibberellin 20-oxidase cDNA from pumpkin. The Plant Journal. 23, pp. 329-338.

Modification of gibberellin production and plant development in Arabidopsis by sense and antisense expression of gibberellin 20‐oxidase genes

A - Papers appearing in refereed journals

Coles, J. P., Phillips, A. L., Croker, S. J., García‐Lepe, R., Lewis , M. J. and Hedden, P. 1999. Modification of gibberellin production and plant development in Arabidopsis by sense and antisense expression of gibberellin 20‐oxidase genes. The Plant Journal. 17 (5), pp. 547-556. https://doi.org/10.1046/j.1365-313X.1999.00410.x

Molecular cloning and functional expression of gibberellin 2-oxidases, multifunctional enzymes involved in gibberellin deactivation

A - Papers appearing in refereed journals

Thomas, S. G., Phillips, A. L. and Hedden, P. 1999. Molecular cloning and functional expression of gibberellin 2-oxidases, multifunctional enzymes involved in gibberellin deactivation. Proceedings of the National Academy of Sciences. 96 (8), pp. 4698-4703. https://doi.org/10.1073/pnas.96.8.4698

Genetic engineering for bolting resistance

C1 - Edited contributions to conferences/learned societies

Van Roggen, P. M., Thomas, S. G., Hedden, P., Phillips, A. L., Debenham, G. B., Scott, R. W. and Mathews, A. M. 1997. Genetic engineering for bolting resistance. Proceedings 60th Congress of the Institut International de Recherches Betteravieres, Cambridge, July 1997 . pp. 571-574

Isolation and Expression of Three Gibberellin 20-Oxidase cDNA Clones from Arabidopsis

A - Papers appearing in refereed journals

Phillips, A. L., Ward, D. A., Uknes, S., Appleford, N. E. J., Lange, T., Huttly, A. K., Gaskin, P., Graebe, J. E. and Hedden, P. 1995. Isolation and Expression of Three Gibberellin 20-Oxidase cDNA Clones from Arabidopsis. Plant Physiology. 108 (3), pp. 1049-1057. https://doi.org/10.1104/pp.108.3.1049

A point mutation in the N-terminus of ribulose-1,5-bisphosphate caboxylase affects ribulose-1,5-bisphosphate binding

A - Papers appearing in refereed journals

Kettleborough, C. A., Phillips, A. L., Keys, A. J. and Parry, M. A. J. 1991. A point mutation in the N-terminus of ribulose-1,5-bisphosphate caboxylase affects ribulose-1,5-bisphosphate binding. Planta. 184, pp. 35-39.

Chimaeras of the Rubisco large subunit from wheat and Anacystis do not assemble into active enzyme in E. coli

A - Papers appearing in refereed journals

Kettleborough, C. A., Parry, M. A. J., Keys, A. J. and Phillips, A. L. 1990. Chimaeras of the Rubisco large subunit from wheat and Anacystis do not assemble into active enzyme in E. coli. Journal of Experimental Botany. 41, pp. 1287-1292.

The role of the N-terminus of the large subunit of ribulose-bisphosphate carboxylase investigated by construction and expression of chimaeric genes.

A - Papers appearing in refereed journals

Kettleborough, C. A., Parry, M. A. J., Burton, S., Gutteridge, S., Keys, A. J. and Phillips, A. L. 1988. The role of the N-terminus of the large subunit of ribulose-bisphosphate carboxylase investigated by construction and expression of chimaeric genes. European Journal of Biochemistry. 170, pp. 335-342. https://doi.org/10.1111/j.1432-1033.1987.tb13704.x

Properties of Rubisco in relation to the control of photorespiration.

G - Articles in popular magazines and other technical publications

Keys, A. J., Parry, M. A. J., Phillips, A. L., Hall, N. P. and Kendall, A. C. 1987. Properties of Rubisco in relation to the control of photorespiration.

Alteration of the activity of ribulose-1, 5-bisphosphate carboxylase through manipulation of its structure and regulation.

G - Articles in popular magazines and other technical publications

Phillips, A. L., Parry, M. A. J. and Gutteridge, S. 1986. Alteration of the activity of ribulose-1, 5-bisphosphate carboxylase through manipulation of its structure and regulation.

Expression of genes of ribulose 1,5-bisphosphate carboxylase in bacteria.

G - Articles in popular magazines and other technical publications

Phillips, A. L., Kettleborough, C. A., Parry, M. A. J., Gutteridge, S. and Keys, A. J. 1986. Expression of genes of ribulose 1,5-bisphosphate carboxylase in bacteria.

Expression of bacterial Rubisco genes in Escherichia coli .

A - Papers appearing in refereed journals

Gutteridge, S., Phillips, A. L., Kettleborough, C. A., Parry, M. A. J. and Keys, A. J. 1986. Expression of bacterial Rubisco genes in Escherichia coli . Philosophical Transactions of the Royal Society B-Biological Sciences. B 313, pp. 433-445.