Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX

C2 - Non-edited contributions to conferences

Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E. 2008. Analysis of the newly sequenced Fusarium genomes using PHI-Base and ONDEX.

Authors	Beacham, A. M., Cavenet, C., Taubert, J., Urban, M., Antoniw, J. F., Rawlings, C. J. and Hammond-Kosack, K. E.
Type	C2 - Non-edited contributions to conferences
Year of Publication	2008
Web address (URL)	http://www.sipav.org/main/jpp/volumes/1208/008_Session2_S25.pdf
Open access	Published as bronze (free) open access
Journal	Journal of Plant Pathology
Journal citation	90(Supplement 3), p. S3.25
Publisher
Funder project or code	Centre for Sustainable Pest and Disease Management (PDM)
	Centre for Mathematical and Computational Biology (MCB)
	Pathogenicity of non-biotrophic fungi infecting cereals
	BBSRC CASE studentship: Fusarium culmorum and F.graminearum pathogenicity on wheat ears
ISSN	1125-4653

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A - Papers appearing in refereed journals

Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. and Bregitzer, P. P. 2018. Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb). Fungal Genetics and Biology. 115 (June), pp. 90-93. https://doi.org/10.1016/j.fgb.2018.01.002

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals

Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x

The electronic Rothamsted Archive (e-RA): an online resource for data from the Rothamsted long-term experiments

A - Papers appearing in refereed journals

Perryman, S. A. M., Castells-Brooke, N. I. D., Glendining, M. J., Goulding, K. W. T., Hawkesford, M. J., Macdonald, A. J., Ostler, R. J., Poulton, P. R., Rawlings, C. J., Scott, T. and Verrier, P. J. 2018. The electronic Rothamsted Archive (e-RA): an online resource for data from the Rothamsted long-term experiments. Scientific Data. 5, p. 180072. https://doi.org/10.1038/sdata.2018.72

Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains

C2 - Non-edited contributions to conferences

Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.

Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713

Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields

C2 - Non-edited contributions to conferences

Kanyuka, K., Machado, A., Urban, M., Lee, W. S., Brown, N. J., King, R. A., Lau, E. Y., Sparks, C. A., Bonato, A. L. V., Tibola, C. S., Martins, N. F., Aragao, F. J., West, J., Fernandes, J. M. C. and Hammond-Kosack, K. E. 2017. Host-induced gene silencing for the control of the Fusarium Head Blight in wheat fields. 1st COST iPlanta Conferernce; "Creating the plant RNAi research network CA15223", La Sapienza - CNR Headquarter , Rome, Italy, 15-17 February 2017.

RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals

A - Papers appearing in refereed journals

Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799. https://doi.org/10.1002/ps.4748

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection

A - Papers appearing in refereed journals

Brown, N. A., Evans, J., Mead, A. and Hammond-Kosack, K. E. 2017. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. Molecular Plant Pathology. 18 (9), pp. 1295-1312. https://doi.org/10.1111/mpp.12564

A review of wheat diseases – a field perspective

A - Papers appearing in refereed journals

Figueroa, M., Hammond-Kosack, K. E. and Solomon, P. S. 2017. A review of wheat diseases – a field perspective. Molecular Plant Pathology. 19 (6), pp. 1523-1536. https://doi.org/10.1111/mpp.12618

EpiGeNet : A graph database of interdependencies between genetic and epigenetic events in colorectal cancer

A - Papers appearing in refereed journals

Balaur, I., Saqi, M., Barat, A., Lysenko, A., Mazein, A., Ruskin, H. J., Auffray, C. and Rawlings, C. J. 2017. EpiGeNet : A graph database of interdependencies between genetic and epigenetic events in colorectal cancer. Journal of Computational Biology. 24 (10), pp. 969-980. https://doi.org/10.1089/cmb.2016.0095

Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes

A - Papers appearing in refereed journals

Hassani-Pak, K. and Rawlings, C. J. 2017. Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. Journal of Integrative Bioinformatics. 14 (1), pp. 1-9. https://doi.org/10.1515/jib-2016-0002

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

A - Papers appearing in refereed journals

Urban, M., Cuzick, A., Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar and Hammond-Kosack, K. E. 2017. PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. Nucleic Acids Research. 45 (D1), pp. D604-D610. https://doi.org/10.1093/nar/gkw1089

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks

A - Papers appearing in refereed journals

Balaur, I., Mazein, A., Saqi, M., Lysenko, A., Rawlings, C. J. and Auffray, C. 2017. Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks. Bioinformatics. 33 (7), pp. 1096-1098. https://doi.org/10.1093/bioinformatics/btw731

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

A - Papers appearing in refereed journals

Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3). https://doi.org/10.1111/pbi.12631

Annotation of Fusarium graminearum (PH-1) version 5.0

A - Papers appearing in refereed journals

King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16. https://doi.org/10.1128/genomeA.01479-16

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

A - Papers appearing in refereed journals

King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease.

A - Papers appearing in refereed journals

Bresso, E., Togawa, R., Hammond-Kosack, K. E., Urban, M., Maigret, B. and Martins, N. F. 2016. GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics. 17 (Suppl 18), p. 463. https://doi.org/10.1186/s12859-016-1342-9

Searching for novel targets to control wheat head blight disease—I-Protein identification,3D modeling and virtual screening

A - Papers appearing in refereed journals

Martens, N. F., Bresso, E., Togawa, R. C., Urban, M., Antoniw, J. F., Maigret, B. and Hammond-Kosack, M. 2016. Searching for novel targets to control wheat head blight disease—I-Protein identification,3D modeling and virtual screening. Advances in Microbiology. 6 (11), pp. 811-830. https://doi.org/10.4236/aim.2016.611079

Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen

A - Papers appearing in refereed journals

Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905

Developing integrated crop knowledge networks to advance candidate gene discovery

A - Papers appearing in refereed journals

Hassani-Pak, K., Castellote, M., Esch, M., Hindle, M. M., Lysenko, A., Taubert, J. and Rawlings, C. J. 2016. Developing integrated crop knowledge networks to advance candidate gene discovery. Applied and Translational Genomics. 11 (December), pp. 18-26. https://doi.org/10.1016/j.atg.2016.10.003

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

Resurrecting a 750-year-old plant virus

C2 - Non-edited contributions to conferences

Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.

A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley

C2 - Non-edited contributions to conferences

Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

C2 - Non-edited contributions to conferences

Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680

Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes

C1 - Edited contributions to conferences/learned societies

Urban, M., Irvine, A., Cuzick, A. and Hammond-Kosack, K. E. 2016. Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. Proceedings 5th ISFHB - 2nd IWWB Symposium, 5-10, Florianopolis, Brasil.

First draft genome sequence of a UK strain (UK99) of Fusarium culmorum

A - Papers appearing in refereed journals

Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16. https://doi.org/10.1128/genomeA.00771-16

The genome of the emerging barley pathogen Ramularia collo-cygni

A - Papers appearing in refereed journals

McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584. https://doi.org/10.1186/s12864-016-2928-3

Representing and querying disease networks using graph databases

A - Papers appearing in refereed journals

Lysenko, A., Roznovat, I. A., Saqi, M., Mazein, A., Rawlings, C. J. and Auffray, C. 2016. Representing and querying disease networks using graph databases. BioData Mining. 9 (23), pp. 1-19. https://doi.org/10.1186/s13040-016-0102-8

A role for BAK1 in the Zymoseptoria tritici-wheat interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease

A - Papers appearing in refereed journals

Bresso, E., Leroux, V., Urban, M., Hammond-Kosack, K. E., Maigret, B. and Martins, N. F. 2016. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease. Journal Of Molecular Modeling. 22, p. 163. https://doi.org/10.1007/s00894-016-3021-1

The North Wyke Farm Platform: effect of temperate grassland farming systems on soil moisture contents, runoff and associated water quality dynamics

A - Papers appearing in refereed journals

Orr, R. J., Murray, P. J., Eyles, C. J., Blackwell, M. S. A., Cardenas, L. M., Collins, A. L., Dungait, J. A. J., Goulding, K. W. T., Griffith, B. A., Gurr, S. J., Harris, P., Hawkins, J. M. B., Misselbrook, T. H., Rawlings, C. J., Shepherd, A., Sint, H. M., Takahashi, T., Tozer, K. N., Whitmore, A. P., Wu, L. and Lee, M. R. F. 2016. The North Wyke Farm Platform: effect of temperate grassland farming systems on soil moisture contents, runoff and associated water quality dynamics. European Journal of Soil Science. 67 (4), pp. 374-385. https://doi.org/10.1111/ejss.12350

Publishing FAIR data: an exemplar methodology utilizing PHI-base

A - Papers appearing in refereed journals

Rodriguez-Iglesias, A., Rodriguez-Gonzales, A., Irvine, A. G., Sesma, A., Urban, M., Hammond-Kosack, K. E. and Wilkinson, M. D. 2016. Publishing FAIR data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science. 7, p. 641. https://doi.org/10.3389/fpls.2016.00641

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

C2 - Non-edited contributions to conferences

Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

PhytoPath: an integrative resource for plant pathogen genomics

A - Papers appearing in refereed journals

Pedro, H., Maheswari, U., Urban, M., Irvine, A. G., Cuzick, A., Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, K. E. and Kersey, P. J. 2016. PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Research. 44 (D1), pp. D688-D693. https://doi.org/10.1093/nar/gkv1052

The trans-kingdom identification of negative regulators of pathogen hypervirulence

A - Papers appearing in refereed journals

Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2016. The trans-kingdom identification of negative regulators of pathogen hypervirulence. FEMS Microbiology Reviews. 40 (1), pp. 19-40. https://doi.org/10.1093/femsre/fuv042

Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops

C1 - Edited contributions to conferences/learned societies

Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90

Exploring the susceptibility of cereal species to Phialophora fungi

C1 - Edited contributions to conferences/learned societies

Osborne, S., Mcmillan, V. E., Whalley, W. R., Foulkes, J. and Hammond-Kosack, K. E. 2015. Exploring the susceptibility of cereal species to Phialophora fungi. Abstracts Molecular Biology of Plant Pathogens Conference (MBPP), University of West England, Bristol, 8-9 April, 2015. pp. 56

Plant fungal resistance gene. WO2017103582 (A1)

H1 - Patents granted

Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).

Responses to plant pathogens

B - Book chapters etc edited externally

Hammond-Kosack, K. E. and Jones, J. D. G. 2015. Responses to plant pathogens. in: Jones, R. L., Buchanan, B. B. and Gruissem, W. (ed.) Biochemistry and molecular biology of plants, 2nd ed John Wiley & Sons Chichester, West Sussex. pp. 984-1050

Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars

G - Articles in popular magazines and other technical publications

Baggs, E., Moughan, J., Mcmillan, V. E. and Hammond-Kosack, K. E. 2015. Investigating a potential link between take-all disease progression and root system phenotypes in two important elite winter wheat cultivars. BSPP News. 78, pp. 34-35.

Secreted biomolecules in fungal plant pathogenesis

B - Book chapters etc edited externally

Brown, N. A. and Hammond-Kosack, K. E. 2015. Secreted biomolecules in fungal plant pathogenesis. in: Gupta, V. K., Sreenivasaprasad, S. and Mach, R. L. (ed.) Fungal biomolecules: sources, applications and recent developments John Wiley & Sons Chichester, West Sussex. pp. 263-310

An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota

A - Papers appearing in refereed journals

Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038

Host to a stranger: Arabidopsis and Fusarium ear blight

A - Papers appearing in refereed journals

Brewer, H. C. and Hammond-Kosack, K. E. 2015. Host to a stranger: Arabidopsis and Fusarium ear blight. Trends in Plant Science. 20, pp. 651-663. https://doi.org/10.1016/j.tplants.2015.06.011

Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence

A - Papers appearing in refereed journals

Urban, M., Irvine, A. G., Cuzick, A. and Hammond-Kosack, K. E. 2015. Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. Frontiers in Plant Science. 6, p. 605. https://doi.org/10.3389/fpls.2015.00605

The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

A - Papers appearing in refereed journals

King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544. https://doi.org/10.1186/s12864-015-1756-1

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

A - Papers appearing in refereed journals

Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008

e-RA, the electronic Rothamsted Archive: long-term data for modern-day agroecological research

A - Papers appearing in refereed journals

Glendining, M. J., Perryman, S. A. M., Castells-Brooke, N. I. D. and Rawlings, C. J. 2015. e-RA, the electronic Rothamsted Archive: long-term data for modern-day agroecological research. Aspects of Applied Biology. 128.

An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea

A - Papers appearing in refereed journals

Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions

A - Papers appearing in refereed journals

Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261. https://doi.org/10.1186/s12864-015-1412-9

Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals

Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions - MPMI. 28, pp. 590-604. https://doi.org/10.1094/MPMI-10-14-0346-R

In planta transient expression systems for monocots

B - Book chapters etc edited externally

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432

Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition

A - Papers appearing in refereed journals

Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927

The Pathogen-Host Interactions database (PHI-base): additions and future developments

A - Papers appearing in refereed journals

Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H. and Hammond-Kosack, K. E. 2015. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Research. 43, pp. D645-D655. https://doi.org/10.1093/nar/gku1165

Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici

A - Papers appearing in refereed journals

Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605. https://doi.org/10.1111/nph.13323

A framework for mining life sciences data on the semantic web in an interactive, graph-based environment

B - Book chapters etc edited externally

Lysenko, A., Grzebyta, J., Hindle, M. M., Rawlings, C. J. and Splendiani, A. 2014. A framework for mining life sciences data on the semantic web in an interactive, graph-based environment. in: Formenti, E., Wit, E. and Tagliaferri, R. (ed.) Computational intelligence methods for bioinformatics and biostatistics. Lecture Notes in Computer Science, Vol. 8452 Springer, Dordrecht. pp. 225-237

Interactive exploration of integrated biological datasets using context-sensitive workflows

A - Papers appearing in refereed journals

Horn, F., Rittweger, M., Taubert, J., Lysenko, A., Rawlings, C. J. and Guthke, R. 2014. Interactive exploration of integrated biological datasets using context-sensitive workflows. Frontiers in Genetics. 5, p. 21. https://doi.org/10.3389/fgene.2014.00021

Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum

A - Papers appearing in refereed journals

Brewer, H. C., Hammond-Kosack, K. E. and Hawkins, N. D. 2014. Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biology. 14, p. 317. https://doi.org/10.1186/s12870-014-0317-0

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703

Systems responses to progressive water stress in durum wheat

A - Papers appearing in refereed journals

Habash, D. Z., Baudo, M., Hindle, M. M., Powers, S. J., Defoin-Platel, M., Mitchell, R. A. C., Saqi, M., Rawlings, C. J., Latiri, K., Araus, J. L., Abdulkader, A., Tuberosa, R., Lawlor, D. W. and Nachit, M. M. 2014. Systems responses to progressive water stress in durum wheat. PLOS ONE. 9, p. e108431. https://doi.org/10.1371/journal.pone.0108431

Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs

A - Papers appearing in refereed journals

Graham, N. S., Hammond, J. P., Lysenko, A., Mayes, S., O Lochlainn, S., Blasco, B., Bowen, H. C., Rawlings, C. J., Rios, J. J., Welham, S. J., Carion, P. W. C., Dupuy, L. X., King, G. J., White, P. J. and Broadley, M. R. 2014. Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26, pp. 2818-2830. https://doi.org/10.1105/tpc.114.128603

A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences

C2 - Non-edited contributions to conferences

Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069

Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction

C2 - Non-edited contributions to conferences

Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .

Rhynchosporium commune effector compliment and their role in pathogenicity on barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335

Rhynchosporium commune effectors identification and exploitation

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .

Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .

From Rhynchosporium commune genome sequence to barley resistance

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .

Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species

A - Papers appearing in refereed journals

Mcmillan, V. E., Gutteridge, R. J. and Hammond-Kosack, K. E. 2014. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biology. 14, p. 212. https://doi.org/10.1186/s12870-014-0212-8

Biotechnology: plant protection

B - Book chapters etc edited externally

Hammond-Kosack, K. E. 2014. Biotechnology: plant protection. in: Vanalfen, N. K. (ed.) Encyclopedia of agriculture and food systems, Vol. 2 Elsevier, San Diego. pp. 134-152

The role of chitin signalling in defence against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .

WGIN Stakeholders' Newsletter [April 2014]

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E., Hawkesford, M. J., Mcmillan, V. E., Hammond-Kosack, M., Shepherd, G., Griffiths, S. and Foulkes, J. 2014. WGIN Stakeholders' Newsletter [April 2014]. WGIN Stakeholders' Newsletter. April.

Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici

C2 - Non-edited contributions to conferences

Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .

Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat

A - Papers appearing in refereed journals

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions - MPMI. 27 (3), pp. 236-243. https://doi.org/10.1094/MPMI-07-13-0201-R

Ondex Web: web-based visualization and exploration of heterogeneous biological networks

A - Papers appearing in refereed journals

Taubert, J., Hassani-Pak, K., Castells-Brooke, N. I. D. and Rawlings, C. J. 2014. Ondex Web: web-based visualization and exploration of heterogeneous biological networks. Bioinformatics. 30, pp. 1034-1035. https://doi.org/10.1093/bioinformatics/btt740

New developments in identification and quantification of airborne inoculum

C2 - Non-edited contributions to conferences

West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.

Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79

BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2013. Investigation of metabolic processes involved in the infection of wheat by Mycosphaerella graminicola. Abstracts 5th Congress of European Microbiologists (FEMS), Leipzig, 21-25 July 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Berepiki, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .

Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection

C2 - Non-edited contributions to conferences

Kanyuka, K., Lee, W-S., Hammond-Kosack, K. E. and Rudd, J. J. 2013. Modulation and manipulation of plant defences by Mycosphaerella graminicola during wheat infection. Abstracts 12th International Wheat Genetics Symposium (IWGS), Yokohama, 8-14 September 2013 .

Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune

C2 - Non-edited contributions to conferences

Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Identification and exploitation of effectors from barley fungal pathogen Rhynchosporium commune. Abstracts 1st Annual Meeting COST Action FA 1208 Pathogen-informed Strategies for Sustainable Broad-Spectrum Crop Resistance, Birnam, 9-11 October 2013 .

Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases

C2 - Non-edited contributions to conferences

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.

Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

A - Papers appearing in refereed journals

Lawler, K., Hammond-Kosack, K. E., Brazma, A. and Coulson, R. M. R. 2013. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC Systems Biology. 7, p. 52. https://doi.org/10.1186/1752-0509-7-52

BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences

Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .

Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue

B - Book chapters etc edited externally

Urban, M. and Hammond-Kosack, K. E. 2013. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. in: Brown, D. W. and Proctor, R. H. (ed.) Fusarium: genomics, molecular and cellular biology Caister Academic Press, Norwich, Norfolk. pp. 43-79

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

A - Papers appearing in refereed journals

Lysenko, A., Urban, M., Bennett, L., Tsoka, S., Janowska-Sejda, E., Rawlings, C. J., Hammond-Kosack, K. E. and Saqi, M. 2013. Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PLOS ONE. 8, p. e67926. https://doi.org/10.1371/journal.pone.0067926

Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes

C2 - Non-edited contributions to conferences

Urban, M., Antoniw, J. F., Martins, N., Lysenko, A., Grzebyta, J., Janowska-Sedja, E., Saqi, M. and Hammond-Kosack, K. E. 2013. Using the phenotypic information in the PHI-base database to explore pathogen genomes, transcriptomes and proteomes. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 177

Exploring the metabolome of cereal infecting fusaria

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Lowe, R. G. T., Canning, G., Urban, M., Beale, M. H. and Ward, J. L. 2013. Exploring the metabolome of cereal infecting fusaria. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 21

Characterisation of stuA homologue in Fusarium culmorum

C2 - Non-edited contributions to conferences

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hammond-Kosack, K. E., Hoffmann, L., Beyer, M. and Migheli, Q. 2013. Characterisation of stuA homologue in Fusarium culmorum. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 185

FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner

A - Papers appearing in refereed journals

Pasquali, M., Spanu, F., Scherm, B., Balmas, V., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2013. FcStuA from Fusarium culmorum controls wheat foot and root rot in a toxin dispensable manner. PLOS ONE. 8, p. e57429 (14pp). https://doi.org/10.1371/journal.pone.0057429

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use

A - Papers appearing in refereed journals

Geiser, D. M., Aoki, T., Bacon, C. W., Baker, S. E., Bhattacharyya, M. K., Brandt, M. E., Brown, D. W., Burgess, L. W., Chulze, S., Coleman, J. J., Correll, J. C., Covert, S. F., Crous, P. W., Cuomo, C. A., De Hoog, G. S., Di Pietro, A., Elmer, W. H., Epstein, L., Frandsen, R. J. N., Freeman, S., Gagkaeva, T., Glenn, A. E., Gordon, T. R., Gregory, N. F. and Hammond-Kosack, K. E. 2013. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology. 103 (5), pp. 400-408. https://doi.org/10.1094/PHYTO-07-12-0150-LE

Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function

A - Papers appearing in refereed journals

Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Characterization of the sterol 14alpha-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. New Phytologist. 198 (3), pp. 821-835. https://doi.org/10.1111/nph.12193

Gene function hypotheses for the Campylobacter jejuni glycome generated by a logic-based approach

A - Papers appearing in refereed journals

Sternberg, M. J. E., Tamaddoni-Nezhad, A., Lesk, V. I., Kay, E., Hitchen, P. G., Cootes, A., Van Alphen, L. B., Lamoureux, M. P., Jarrell, H. C., Rawlings, C. J., Soo, E. C., Szymanski, C. M., Dell, A., Wren, B. W. and Muggleton, S. H. 2013. Gene function hypotheses for the Campylobacter jejuni glycome generated by a logic-based approach. Journal of Molecular Biology. 425 (1), pp. 186-197. https://doi.org/10.1016/j.jmb.2012.10.014

Exploitation of genomics in fungicide research: current status and future perspectives

A - Papers appearing in refereed journals

Cools, H. J. and Hammond-Kosack, K. E. 2013. Exploitation of genomics in fungicide research: current status and future perspectives. Molecular Plant Pathology. 14 (2), pp. 197-210. https://doi.org/10.1111/mpp.12001

Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum

B - Book chapters etc edited externally

Bennett, L., Lysenko, A., Papageorgiou, L. G., Urban, M., Hammond-Kosack, K. E., Rawlings, C. J., Saqi, M. and Tsoka, S. 2012. Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum. in: Gilbert, D. and Heiner, M. (ed.) Computational Methods in Systems Biology Springer-Verlag Berlin Heidelberg.

InterStoreDB: a generic integration resource for genetic and genomic data

A - Papers appearing in refereed journals

Love, C. G., Andongabo, A. E., Wang, J., Carion, P. W. C., Rawlings, C. J. and King, G. J. 2012. InterStoreDB: a generic integration resource for genetic and genomic data. Journal of Integrative Plant Biology. 54 (5), pp. 345-355. https://doi.org/10.1111/j.1744-7909.2012.01120.x

Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species

C2 - Non-edited contributions to conferences

Lucas, J. A., Amaral, A., Hammond-Kosack, K. E. and Rudd, J. J. 2012. Genomic approaches to analysing disease caused by plant pathogenic Mycosphaerella species. Abstracts 4th Brazilian Congress of Biotechnology, Guaruja, 28 October - 1 November 2012 . pp. 30

Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot

C2 - Non-edited contributions to conferences

Pasquali, M., Spanu, F., Balmas, V., Scherm, B., Hoffmann, L., Hammond-Kosack, K. E., Beyer, M. and Migheli, Q. 2012. Isolation and characterisation of FcStuA in Fusarium culmorum, causal agent of foot crown rot. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 98

Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group

G - Articles in popular magazines and other technical publications

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2012. Shouldn't enantiomeric purity be included in the minimum information about a bioactive entity? Response from the MIABE group. Nature Reviews Drug Discovery. 10, p. 661. https://doi.org/10.1038/nrd3503-c2

Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum

C2 - Non-edited contributions to conferences

Martins, N. F. and Hammond-Kosack, K. E. 2012. Estudos avancados para deteccao de genes diferencialmente expressos em trigo infectado por Fusarium graminearum. Abstracts 1st Meeting EMBRAPA Researchers and Engineers in Europe, Montpellier, 18 October 2012 .

Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein

A - Papers appearing in refereed journals

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2012. Barley stripe mosaic virus- mediated tools for investigating gene function in cereal plants and their pathogens: virus-induced gene silencing, host-mediated gene silencing and virus-mediated overexpression of heterologous protein. Plant Physiology. 160, pp. 582-590. https://doi.org/10.1104/pp.112.203489

Phytopath - A new bioinformatics resource for plant pathogens

C2 - Non-edited contributions to conferences

Pedro, H., Grzebyta, J., Urban, M., Saqi, M., Kerhornou, A., Maheswari, U., Kersey, P. and Hammond-Kosack, K. E. 2012. Phytopath - A new bioinformatics resource for plant pathogens. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 138

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp). https://doi.org/10.1371/journal.pone.0049904

A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. A refinement of the predicted secretome for the wheat leaf pathogen Mycosphaerella graminicola. Abstracts IS-MPMI 2012 15th International Congress, Kyoto, 29 July - 2 August 2012 . pp. 104

Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Lee, W-S., Marshall, R., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2012. Virus-induced gene silencing as a tool to study wheat gene function in the interaction with the pathogenic fungus Mycosphaerella graminicola. Abstracts Plant Biology Congress, Freiburg, 29 July-3 August 2012 . pp. 709

Phytopath: new pathogen resource launched

G - Articles in popular magazines and other technical publications

Kersey, P., Pedro, H., Maheswari, U., Hammond-Kosack, K. E., Urban, M., Saqi, M. and Grzebyta, J. 2012. Phytopath: new pathogen resource launched. GARNish Newsletter. 17, p. 8.

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Rank Prize Funds Mini-Symposium on New Horizons in Plant-Pathogen Interactions, Grasmere, 30 April-3 May 2012 .

Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes

C2 - Non-edited contributions to conferences

Oliver, R. P., Williams, A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. Chromosomal evolutionary processes in filamentous fungi: macrosynteny and mesosynteny in basidiomycetes and concatenated ascomycete genomes. Abstracts Dothideomycetes Satellite Meeting, Marburg, 3 April 2012 .

The role of chitin signalling in the wheat - M. graminicola interaction

C2 - Non-edited contributions to conferences

Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2012. The role of chitin signalling in the wheat - M. graminicola interaction. Abstracts Molecular Biology of Plant Pathogens, Reading, 16-17 April 2012 .

Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Brown, N. A., Urban, M. and Antoniw, J. F. 2012. Exploring the early symptomless phase of Fusarium graminearum infection of wheat ears. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 74

Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Derbyshire, M., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2012. Functional characterisation of Cytochrome P450 genes from the wheat leaf pathogen Mycosphaerella graminicola. Abstracts 11th European Conference on Fungal Genetics, Marburg, 30 March - 2 April 2012 . pp. 233

The top 10 fungal pathogens in molecular plant pathology

A - Papers appearing in refereed journals

Dean, R., Van Kan, J. A. L., Pretorius, Z. A., Hammond-Kosack, K. E., Di Pietro, A., Spanu, P. D., Rudd, J. J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G. D. 2012. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 13 (4), pp. 414-430. https://doi.org/10.1111/j.1364-3703.2011.00783.x

The 26th Fungal Genetics Conference, Asilomar, USA, 15th-20th March 2011

G - Articles in popular magazines and other technical publications

Gurr, S. J., Dyer, P. S., Brown, N. A., Urban, M. and Tauati, S. 2012. The 26th Fungal Genetics Conference, Asilomar, USA, 15th-20th March 2011. BSPP News. 67, pp. 20-25.

The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum

A - Papers appearing in refereed journals

Merhej, J., Urban, M., Dufresne, M., Hammond-Kosack, K. E., Richard-Forget, F. and Barreau, C. 2012. The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Molecular Plant Pathology. 13 (4), pp. 363-374. https://doi.org/10.1111/j.1364-3703.2011.00755.x

The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis

A - Papers appearing in refereed journals

Brown, N. A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLOS ONE. 7, p. e33731 (14pp). https://doi.org/10.1371/journal.pone.0033731

Confidential report to Syngenta, January 2012

D1 - Technical reports: non-confidential

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2012. Confidential report to Syngenta, January 2012.

The induction of mycotoxins by trichothecene producing Fusarium species

B - Book chapters etc edited externally

Lowe, R., Jubault, M., Canning, G., Urban, M. and Hammond-Kosack, K. E. 2012. The induction of mycotoxins by trichothecene producing Fusarium species. in: Thomma, B. P. H. J. and Bolton, M. D. (ed.) Plant fungal pathogens: methods and protocols (Methods in Molecular Biology, Vol 835) Springer, Berlin. pp. 439-455

Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits

C1 - Edited contributions to conferences/learned societies

Defoin-Platel, M., Hassani-Pak, K. and Rawlings, C. J. 2011. Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits. Systems Approaches to Crop Improvement. Aspects of Applied Biology 107 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 79-87

Lost in translation: data integration tools meet the Semantic Web

C1 - Edited contributions to conferences/learned societies

Splendiani, A., Rawlings, C. J., Kuo, S-C., Stevens, R. and Lord, P. 2011. Lost in translation: data integration tools meet the Semantic Web. Proceedings 1st IRAST International Conference on Data Engineering and Internet Technology (DEIT), Bali, 15-17 March 2011 . IEEE. pp. 621-625

Virus-induced gene silencing system for functional genomics studies in wheat and related cereals

C2 - Non-edited contributions to conferences

Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14

WGIN Stakeholder's Newsletter [November 2011]

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2011. WGIN Stakeholder's Newsletter [November 2011]. WGIN Stakeholders' Newsletter. November.

Reducing take-all inoculum build-up during a first wheat crop

C2 - Non-edited contributions to conferences

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).

AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations

A - Papers appearing in refereed journals

Defoin-Platel, M., Hindle, M. M., Lysenko, A., Powers, S. J., Habash, D. Z., Rawlings, C. J. and Saqi, M. 2011. AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. BMC Bioinformatics. 12, p. 431 (13pp). https://doi.org/10.1186/1471-2105-12-431

OmniMapFree a unified tool to visualise and explore sequenced genomes

A - Papers appearing in refereed journals

Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp). https://doi.org/10.1186/1471-2105-12-447

Characterisation of the Fusarium graminearum-wheat floral interaction

A - Papers appearing in refereed journals

Brown, N. A., Bass, C. G., Baldwin, T. K., Chen, Huaigu, Massot, F., Carion, P. W. C., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2011. Characterisation of the Fusarium graminearum-wheat floral interaction. Journal of Pathogens. 2011, p. 626345. https://doi.org/10.4061/2011/626345

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

A - Papers appearing in refereed journals

Lysenko, A., Defoin-Platel, M., Hassani-Pak, K., Taubert, J., Hodgman, C., Rawlings, C. J. and Saqi, M. 2011. Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics. 12, p. 203 (14pp). https://doi.org/10.1186/1471-2105-12-203

Minimum information about a bioactive entity (MIABE)

A - Papers appearing in refereed journals

Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2011. Minimum information about a bioactive entity (MIABE). Nature Reviews Drug Discovery. 10, pp. 661-669. https://doi.org/10.1038/nrd3503

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

A - Papers appearing in refereed journals

Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

WIBL: Workbench for Integrative Biological Learning

A - Papers appearing in refereed journals

Lesk, V., Taubert, J., Rawlings, C. J., Dunbar, S. and Muggleton, S. 2011. WIBL: Workbench for Integrative Biological Learning. Journal of Integrative Bioinformatics. 8, p. 156 (9pp). https://doi.org/10.2390/biecoll-jib-2011-156

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

A - Papers appearing in refereed journals

Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070

Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat

A - Papers appearing in refereed journals

Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347

Infection of the wheat ear by the fungus Fusarium culmorum

C2 - Non-edited contributions to conferences

Van De Meene, A., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2011. Infection of the wheat ear by the fungus Fusarium culmorum. Abstracts Botanical Microscopy Conference, Wageningen, 16-21 April 2011 .

A new approach to reduce the risk of Take-all disease

G - Articles in popular magazines and other technical publications

Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.

Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop

A - Papers appearing in refereed journals

Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206. https://doi.org/10.1111/j.1365-3059.2010.02375.x

The unseen threat of symptomless Fusarium wheat ear infection

C1 - Edited contributions to conferences/learned societies

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2011. The unseen threat of symptomless Fusarium wheat ear infection. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 143-149

Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment

A - Papers appearing in refereed journals

Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves

A - Papers appearing in refereed journals

Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71. https://doi.org/10.1016/j.jplph.2010.05.024

Analysis and visualisation of RDF resources in Ondex

G - Articles in popular magazines and other technical publications

Canevet, C., Lysenko, A., Splendiani, A., Pocock, M. J. O. and Rawlings, C. J. 2010. Analysis and visualisation of RDF resources in Ondex. Nature Precedings. https://doi.org/10.1038/npre.2010.5430

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

The unseen threat to UK wheat production from Fusarium ear blight

C2 - Non-edited contributions to conferences

Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. The unseen threat to UK wheat production from Fusarium ear blight. Abstracts CropWorld, London, 1-3 November 2010 .

Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight. Abstracts 9th International Mycological Congress: the Biology of Fungi, Edinburgh, 1-6 August 2010 .

A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp

A - Papers appearing in refereed journals

Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions - MPMI. 23 (12), pp. 1605-1618. https://doi.org/10.1094/MPMI-04-10-0092

The Fusaria

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2010. The Fusaria.

The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears

A - Papers appearing in refereed journals

Brown, N. A., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2010. The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biology. 114 (7), pp. 555-571. https://doi.org/10.1016/j.funbio.2010.04.006

A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum

A - Papers appearing in refereed journals

Baldwin, T. K., Gaffoor, I., Antoniw, J. F., Andries, C., Guenther, J., Urban, M., Hallen-Adams, H. E., Pitkin, J., Hammond-Kosack, K. E. and Trail, F. 2010. A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Molecular Plant-Microbe Interactions - MPMI. 23 (8), pp. 1083-1096. https://doi.org/10.1094/MPMI-23-8-1083

Characterization of siRNAs derived from rice stripe virus in infected rice plants by deep sequencing

A - Papers appearing in refereed journals

Yan, F., Zhang, H., Adams, M. J., Yang, J., Peng, J., Antoniw, J. F., Zhou, Y. and Chen, J. 2010. Characterization of siRNAs derived from rice stripe virus in infected rice plants by deep sequencing. Archives of Virology. 155, pp. 935-940. https://doi.org/10.1007/s00705-010-0670-8

The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .

A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation

A - Papers appearing in refereed journals

Baldwin, T. K., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2010. A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Molecular Plant-Microbe Interactions - MPMI. 23 (5), pp. 566-577. https://doi.org/10.1094/MPMI-23-5-0566

Enhancing data integration with text analysis to find proteins implicated in plant stress response

A - Papers appearing in refereed journals

Hassani-Pak, K., Legaie, R., Canevet, C., Van Den Berg, H. A., Moore, J. D. and Rawlings, C. J. 2010. Enhancing data integration with text analysis to find proteins implicated in plant stress response. Journal of Integrative Bioinformatics. 7, p. 121 (13pp). https://doi.org/10.2390/biecoll-jib-2010-121

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

A - Papers appearing in refereed journals

Ma, L-J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W-B., Woloshuk, C., Xie, X., Xu, J-R., Antoniw, J. F., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P., Danchin, E. G. J., Diener, A., Gale, L. R. and Hammond-Kosack, K. E. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464, pp. 367-373. https://doi.org/10.1038/nature08850

Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats

A - Papers appearing in refereed journals

Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009

Ondex: Data integration and visualisation for the Semantic Web

C2 - Non-edited contributions to conferences

Canevet, C., Splendiani, A., Kuo, S-C., Stevens, R., Lord, P. and Rawlings, C. J. 2009. Ondex: Data integration and visualisation for the Semantic Web. In: CEUR Workshop Proceedings vol. 559, CEUR-WS.org, Workshop on Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2009, Amsterdam, 1/07/2009. . CEUR-WS.org.

Pest wars - press paper

C2 - Non-edited contributions to conferences

Lucas, J. A., Field, L. M., Cools, H. J. and Hammond-Kosack, K. E. 2009. Pest wars - press paper. Pest Wars: British Science Festival, Guildford, 8 September 2009 .

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Freeman, A., Desmouceaux, N., Urban, M. and Cuzick, A. 2009. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 .

Molecular and genetic studies on Fusarium Ear Blight disease of wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .

Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .

A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18

Chemical induced defences in association with wheat leaf infection by Septoria tritici . Confidential report for DuPont Ltd

D1 - Technical reports: non-confidential

Rudd, J. J., Motteram, J. and Antoniw, J. F. 2009. Chemical induced defences in association with wheat leaf infection by Septoria tritici . Confidential report for DuPont Ltd.

Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .

Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E., Urban, M., Franklin, J. F. and Taberer, R. 2009. Construction and establishment of a containment level 3 plant growth facility at Rothamsted Research.

Toward a new paradigm for user interaction on the semantic web to support life sciences investigation

C2 - Non-edited contributions to conferences

Splendiani, A., Kuiper, M. and Rawlings, C. J. 2009. Toward a new paradigm for user interaction on the semantic web to support life sciences investigation. Proceedings Workshop on Semantic Web User Interaction: Sharing Ideas for Complex Problems in User Interaction (SWUI2009), Washington DC, 25 October 2009 .

Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec

G - Articles in popular magazines and other technical publications

Walton, J. D., Avis, T. J., Alfano, J. R., Gijzen, M., Spanu, P., Hammond-Kosack, K. E. and Sanchez, M. 2009. Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec. Molecular Plant-Microbe Interactions - MPMI. 22 (12), pp. 1479-1483. https://doi.org/10.1094/MPMI-22-12-1479

Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases

A - Papers appearing in refereed journals

Lysenko, A., Hindle, M. M., Taubert, J., Saqi, M. and Rawlings, C. J. 2009. Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. Briefings in Bioinformatics. 10, pp. 676-693. https://doi.org/10.1093/bib/bbp047

Virgaviridae: a new family of rod-shaped plant viruses

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F. and Kreuze, J. 2009. Virgaviridae: a new family of rod-shaped plant viruses. Archives of Virology. 154, pp. 1967-1972. https://doi.org/10.1007/s00705-009-0506-6

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp). https://doi.org/10.1186/1471-2164-10-458

Linking life sciences data using graph-based mapping

B - Book chapters etc edited externally

Taubert, J., Hindle, M. M., Lysenko, A., Weile, J., Kohler, J. and Rawlings, C. J. 2009. Linking life sciences data using graph-based mapping. in: Paton, N. W., Hedeler, C. and Missier, P. (ed.) Data Integration in the Life Sciences. DILS 2009. Lecture Notes in Computer Science Volume 564 Springer, Berlin. pp. 16-30

High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley

A - Papers appearing in refereed journals

Hofinger, B. J., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theoretical and Applied Genetics. 119, pp. 851-865. https://doi.org/10.1007/s00122-009-1094-2

High resolution melting curve analysis for mutation detection in plants: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Jing, H-C., Hammond-Kosack, K. E. and Kanyuka, K. 2009. High resolution melting curve analysis for mutation detection in plants: a case study in barley. Abstracts Monogram Network Workshop, Bristol, 29 April-1 May 2009 . pp. 28

Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Motteram, J., Kufner, I., Deller, S., Brunner, F., Hammond-Kosack, K. E., Nurnberger, T. and Rudd, J. J. 2009. Molecular characterization and functional analysis of MgNLP the sole NPP1 domain-containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola. Molecular Plant-Microbe Interactions - MPMI. 22 (7), pp. 790-799. https://doi.org/10.1094/MPMI-22-7-0790

Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues

A - Papers appearing in refereed journals

Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions - MPMI. 22 (5), pp. 560-574. https://doi.org/10.1094/MPMI-22-5-0560

Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers

A - Papers appearing in refereed journals

Cuzick, A., Maguire, K. and Hammond-Kosack, K. E. 2009. Lack of the plant signalling component SGT1b enhances disease resistance to Fusarium culmorum in Arabidopsis buds and flowers. New Phytologist. 181, pp. 901-912. https://doi.org/10.1111/j.1469-8137.2008.02712.x

Barley elicits a similar early basal defence response during host and non-host interactions with Polymyxa root parasites

A - Papers appearing in refereed journals

Mcgrann, G. R. D., Townsend, B. J., Antoniw, J. F., Asher, M. J. C. and Mutasa-Göttgens, E. S. 2009. Barley elicits a similar early basal defence response during host and non-host interactions with Polymyxa root parasites. European Journal of Plant Pathology. 123 (1), pp. 5-15. https://doi.org/10.1007/s10658-008-9332-z

Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Gordon Research Conference on Cellular and Molecular Fungal Biology, Holderness, New Hampshire, 29 June - 4 July 2008 .

Genomic analysis of transcriptional regulators of Fusarium graminearum

C2 - Non-edited contributions to conferences

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Genomic analysis of transcriptional regulators of Fusarium graminearum.

Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains

C2 - Non-edited contributions to conferences

Urban, M., Lowe, R., Allwood, W., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2008. Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains.

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts BSPP Presidentail Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 11

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, 22 September 2008 .

Pathogenicity determinants of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A. M., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Pathogenicity determinants of Fusarium graminearum on wheat ears. Asbtracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 . pp. PR1.24

Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor

D1 - Technical reports: non-confidential

Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum kinome analysis and progress report. Confidential report to industrial sponsor.

How can molecular genetic informtion on plant pathogens benefit disease management?

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2008. How can molecular genetic informtion on plant pathogens benefit disease management? Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 5

Plant resistance signalling hijacked by a necrotrophic fungal pathogen

A - Papers appearing in refereed journals

Hammond-Kosack, K. E. and Rudd, J. J. 2008. Plant resistance signalling hijacked by a necrotrophic fungal pathogen. Plant Signaling and Behavior. 3, pp. 993-995.

Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Reactive oxygen species-related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts BSPP Preseidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 9

The infection biology and transcriptome of wheat pathogen Fusarium graminearum

C2 - Non-edited contributions to conferences

Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology and transcriptome of wheat pathogen Fusarium graminearum. Abstracts BSPP Presidential Meeting on Cereal Pathosystems, London, 16-17 December 2008 . pp. 13

Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease

G - Articles in popular magazines and other technical publications

Jing, H-C., Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease. RRA Newsletter. 27, pp. 3-4.

Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction

A - Papers appearing in refereed journals

Jing, H-C., Lovell, D. J., Gutteridge, R. J., Jenk, D., Kornyukhin, D., Mitrofanova, O., Kema, G. H. J. and Hammond-Kosack, K. E. 2008. Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytologist. 179, pp. 1121-1132. https://doi.org/10.1111/j.1469-8137.2008.02526.x

Take-all and the Wheat Genetic Improvement Network (WGIN)

G - Articles in popular magazines and other technical publications

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Take-all and the Wheat Genetic Improvement Network (WGIN). RRA Newsletter. 27, pp. 1-2.

Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5

G - Articles in popular magazines and other technical publications

Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5. WGIN Stakeholders' Newsletter. October, pp. 1-4.

Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Motteram, J., Pirie, E. J. and Hammond-Kosack, K. E. 2008. Elements of host disease resistance signalling hijacked by Mycosphaerella graminicola during successful wheat leaf infection. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

Investigating resistance mechanisms to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Investigating resistance mechanisms to furoviruses in wheat and barley. Abstracts 14th International Congress of Virology, Istanbul, 10-15 August 2008 .

Characterisation of resistance to furoviruses in wheat and barley

C2 - Non-edited contributions to conferences

Lyons, R., Yilmaz, N. D. K., Zlatska, A., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Characterisation of resistance to furoviruses in wheat and barley. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 .

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Molecular Biology of Plant Pathogens, Birnam, 17-19 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts Syngenta Student Showcase, Jealott's Hill, 16 September 2008 .

Graph-based sequence annotation using a data integration approach

A - Papers appearing in refereed journals

Pesch, R., Lysenko, A., Hindle, M. M., Hassani-Pak, K., Thiele, R., Rawlings, C. J., Kohler, J. and Taubert, J. 2008. Graph-based sequence annotation using a data integration approach. Journal of Integrative Bioinformatics. 5(2):94, p. 15pp. https://doi.org/10.2390/biecoll-jib-2008-94

Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley

A - Papers appearing in refereed journals

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification and characterization of a novel efficient resistance response to the furoviruses SBWMV and SBCMV in barley. Molecular Plant-Microbe Interactions - MPMI. 21 (9), pp. 1193-1204. https://doi.org/10.1094/MPMI-21-9-1193

Exploring resistance in wheat to Fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to Fusarium ear blight disease.

Exploring resistance in wheat to fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2008. Exploring resistance in wheat to fusarium ear blight disease. Abstracts 10th International Fusarium Workshop, Alghero, 30 August-2 September 2008 .

Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2008. Functional analysis of reactive oxygen species - related genes in the wheat pathogen Mycosphaerella graminicola. Abstracts 7th International Mycosphaerella and Stagonospora Symposium, Ascona, 18-22 August 2008 .

NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers

A - Papers appearing in refereed journals

Cuzick, A., Lee, S., Gezan, S. and Hammond-Kosack, K. E. 2008. NPR1 and EDS11 contribute to host resistance against Fusarium culmorum in Arabidopsis buds and flowers. Molecular Plant Pathology. 9 (5), pp. 697-704. https://doi.org/10.1111/J.1364-3703.2008.00488.X

Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Identification of novel resistance phenotypes to Soil-borne cereal mosaic virus (SBCMV) and Soil-borne wheat mosaic virus (SBWMV) in barley. Abstracts Plant Virus Workshop, 162nd Meeting of the Society for General Microbiology, Edinburgh, 1 April 2008 .

The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola

A - Papers appearing in refereed journals

Rudd, J. J., Keon, J. and Hammond-Kosack, K. E. 2008. The wheat mitogen-activated protein kinses TaMPK3 and TaMPK6 are differentially regulated at multiple levels during compatible disease interactions with Mycosphaerella graminicola. Plant Physiology. 147, pp. 802-815. https://doi.org/10.1104/pp.108.119511

Resistance genes (R genes) in plants

B - Book chapters etc edited externally

Hammond-Kosack, K. E. and Kanyuka, K. 2008. Resistance genes (R genes) in plants. in: Encyclopedia of life sciences John Wiley & Sons Chichester, West Sussex.

Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat

C2 - Non-edited contributions to conferences

Kanyuka, K. and Hammond-Kosack, K. E. 2008. Virus-induced gene silencing (VIGS) as a tool for functional genomics in wheat. Abstracts 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008 .

The infection biology of Fusarium graminearum single gene deletion strains

C2 - Non-edited contributions to conferences

Brown, N. A., Baldwin, T., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2008. The infection biology of Fusarium graminearum single gene deletion strains. Abstracts 9th European Conference on Fungal Genetics (ECFG9), Edinburgh, 5-8 April 2008 .

PHI-base update: additions to the pathogen-host interaction database

A - Papers appearing in refereed journals

Winnenburg, R., Urban, M., Beacham, A., Baldwin, T. K., Holland, S., Lindeberg, M., Hansen, H., Rawlings, C. J., Hammond-Kosack, K. E. and Kohler, J. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Research. 36, pp. D572-D576. https://doi.org/10.1093/nar/gkm858

Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue

A - Papers appearing in refereed journals

Cuzick, A., Urban, M. and Hammond-Kosack, K. E. 2008. Fusarium graminearum gene deletion mutants map1 and tri5 reveal similarities and differences in the pathogenicity requirements to cause disease on Arabidopsis and wheat floral tissue. New Phytologist. 177 (4), pp. 990-1000. https://doi.org/10.1111/j.1469-8137.2007.02333.x

Molecular genetic and genomic analysis of wheat-pathogen interactions

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6)

G - Articles in popular magazines and other technical publications

Jing, H-C., Gutteridge, R. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6). WGIN Stakeholders' Newsletter. October, pp. 3-6.

Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6

G - Articles in popular magazines and other technical publications

Jing, H-C. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6. Special WGIN Resources Newsletter. March 2007, pp. 2-6.

Wheat pathogens affecting yield and quality

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2007. Wheat pathogens affecting yield and quality. Abstracts China-UK Wheat Workshop, Beijing, 10-11 December 2007 . pp. 20-21

Can information on the mode of pathogen attack be used to formulate novel crop protection strategies?

C1 - Edited contributions to conferences/learned societies

Rudd, J. J., Jing, H-C. and Hammond-Kosack, K. E. 2007. Can information on the mode of pathogen attack be used to formulate novel crop protection strategies? Proceedings 16th International Plant Protection Congress, Glasgow, 15-18 October 2007 . pp. 706-707

Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions

C2 - Non-edited contributions to conferences

Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Specific resistance of wheat to Mycosphaerella graminicola operates to avoid MAPK activation and programmed cell death (PCD) associated with compatible interactions. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Triticum monococcum as a reference species for wheat genetics and genomics

C2 - Non-edited contributions to conferences

Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .

A re-emerging threat to wheat crops - Black Stem Rust

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2007. A re-emerging threat to wheat crops - Black Stem Rust. RRA Newsletter. Issue 24, p. 2.

New version of Descriptions of Plant Viruses

C2 - Non-edited contributions to conferences

Adams, M. J. and Antoniw, J. F. 2007. New version of Descriptions of Plant Viruses. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant

C2 - Non-edited contributions to conferences

Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Urban, M., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2007. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 52

Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Cuzick, A., Lee, S., Daudi, A., Bass, C. G., Maguire, K. and Urban, M. 2007. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral and wheat floral and leaf tissue. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 107-108

Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum

A - Papers appearing in refereed journals

Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764. https://doi.org/10.1093/jxb/erm225

DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective

C2 - Non-edited contributions to conferences

Lowe, R., Allwood, J. W., Urban, M., Beale, M. H., Ward, J. L. and Hammond-Kosack, K. E. 2007. DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 64

Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum

C2 - Non-edited contributions to conferences

Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms

C2 - Non-edited contributions to conferences

Jing, H-C. and Hammond-Kosack, K. E. 2007. Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 377-378

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts Advances in Virology, Greenwich, 11-12 September 2007 .

Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2007. Differential host responses to Soil-borne Cereal Mosaic Virus (SBCMV) and Soil-borne Wheat Mosaic Virus (SBWMV) in barley. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops

A - Papers appearing in refereed journals

Lasso, G., Antoniw, J. F. and Mullins, J. G. L. 2007. A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops. Bioinformatics. 22, pp. e290-e297. https://doi.org/10.1093/bioinformatics/btl209

Grain fungus genome published

G - Articles in popular magazines and other technical publications

Antoniw, J. F., Baldwin, T., Urban, M. and Hammond-Kosack, K. E. 2007. Grain fungus genome published. EPSO News. No. 3.

Barley non-host interactions with Polymyxa species elicit a similar basal resistance response

C2 - Non-edited contributions to conferences

Mcgrann, G. R. D., Townsend, B. J., Antoniw, J. F., Asher, M. J. C. and Mutasa-Göttgens, E. S. 2007. Barley non-host interactions with Polymyxa species elicit a similar basal resistance response. Abstracts BSPP Presidential Meeting: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 67

Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat

C2 - Non-edited contributions to conferences

Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 53

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears

C2 - Non-edited contributions to conferences

Beacham, A., Antoniw, J. F., Urban, M. and Hammond-Kosack, K. E. 2007. Pathogenicity of Fusarium graminearum and F. culmorum on wheat ears. Abstracts Syngenta Student Showcase, Jealott's Hill, September 2007 .

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

A - Papers appearing in refereed journals

Cuomo, C. A., Guldener, U., Xu, J-R., Trail, F., Turgeon, B. G., Di Pietro, A., Walton, J. D., Ma, L-J., Baker, S. E., Rep, M., Adam, G., Antoniw, J. F., Baldwin, T., Calvo, S., Chang, Y-L., Decaprio, D., Gale, L. R., Gnerre, S., Goswami, R. S., Hammond-Kosack, K. E., Harris, L. J., Hilburn, K., Kennell, J. C., Kroken, S., Magnuson, J. K., Mannhaupt, G., Mauceli, E., Mewes, H-W., Mitterbauer, R., Munsterkotter, M., Nelson, D., O'donnell, K., Ouellet, T., Qi, W., Quesneville, H., Roncero, M. I. G., Seong, K-Y., Tetko, I. V., Urban, M., Waalwijk, C., Ward, T. J., Yao, J., Birren, B. W. and Kistler, H. C. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science - AAAS. 317, pp. 1400-1402. https://doi.org/10.1126/science.1143708

Identifying resistance to Fusarium Ear Blight in wheat

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2007. Identifying resistance to Fusarium Ear Blight in wheat. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 .

Exploring resistance to Fusarium ear blight

C2 - Non-edited contributions to conferences

Lee, S. and Hammond-Kosack, K. E. 2007. Exploring resistance to Fusarium ear blight. Abstracts Molecular Biology of Plant Pathogens (MBPP) Meeting, Bath, 10-11 September 2007 .

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays

A - Papers appearing in refereed journals

Cools, H. J., Fraaije, B. A., Bean, T. P., Antoniw, J. F. and Lucas, J. A. 2007. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays. Molecular Plant Pathology. 8 (5), pp. 639-651. https://doi.org/10.1111/J.1364-3703.2007.00411.X

PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Beacham, A., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2007. PHI-base: a database of experimentally verified pathogenicity, virulence and effector genes in fungal, oomycete and bacterial pathogens of animals and plants. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .

Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm

C2 - Non-edited contributions to conferences

Zlatska, A., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Distribution of microsatellite alleles linked with Sbm 1 locus and controlled resistance to soil-borne cereal mosaic virus (SBCMV) among accessions of Ukrainian common wheat varieties cultivated in 1900-2006 and their relation to world wheat germplasm. Abstracts 15th International Conference on Plant and Animal Genomes, San Diego, 13-17 January 2007 .

Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence

A - Papers appearing in refereed journals

Mitchell, R. A. C., Castells-Brooke, N. I. D., Taubert, J., Verrier, P. J., Leader, D. J. and Rawlings, C. J. 2007. Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. Nucleic Acids Research. 35(Web Server issue), pp. W148-W151. https://doi.org/10.1093/nar/gkm220

Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Investigating the roles of reactive oxygen species during Mycosphaerella graminicola infection of wheat. Abstracts 24th Fungal Genetics Conference, Asilomar, 20-25 March 2007 . pp. 152

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions - MPMI. 20 (2), pp. 178-193. https://doi.org/10.1094/MPMI-20-2-0178

Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum

C2 - Non-edited contributions to conferences

Bass, C. G., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular tools for the study of Fusarium ear blight caused by Fusarium graminearum and Fusarium culmorum. Abstracts 8th European Conference of Fungal Genetics, Vienna, 8-11 April 2006 . pp. 364

Prediction of transmembrane region adjacencies in membrane proteins

C2 - Non-edited contributions to conferences

Togawa, R. C., Antoniw, J. F. and Mullins, J. G. L. 2006. Prediction of transmembrane region adjacencies in membrane proteins. Abstracts 14th Annual Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, 6-10 August 2006 .

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Hammond-Kosack, K. E. and Rudd, J. J. 2006. The transcriptional changes of a hemibiotrophic fungal pathogen during successful adaptation to hypersensitive response-like programmed cell death of its plant host. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 351

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

G - Articles in popular magazines and other technical publications

Jing, H-C and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. April, pp. 2-3.

Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships

G - Articles in popular magazines and other technical publications

Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.

Building trans-Atlantic links in fight against plant pathogen

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E. 2006. Building trans-Atlantic links in fight against plant pathogen. BBSRC Business. October 2006, p. 4.

The host: Resistance gene isolation and realising the potential

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E. 2006. The host: Resistance gene isolation and realising the potential. Abstracts British Society for Plant Pathology 25th Anniversary Celebratory Meeting, London, 19 December 2006 .

BIOEXPLOIT Project

G - Articles in popular magazines and other technical publications

Hammond-Kosack, K. E., Tomas, J. and Smant, G. 2006. BIOEXPLOIT Project. EUCARPIA Bulletin. 33, pp. 32-35.

To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2006. To build pyramids of major R genes and QTLs by marker-assisted introgression into elite material. BIOEXPLOIT Progress Report D5.2.1 on Workpackage WP5.2.

Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2006. Phenotypic analysis and functional characterisation of allele variance in customised core collections. BIOEXPLOIT Progress Report D4.2.1.2 on Workpackage WP4.2.

Development and uptake of a scheme for predicting risk of severe light leaf spot on oilseed rape

G - Articles in popular magazines and other technical publications

Evans, N., Welham, S. J., Antoniw, J. F. and Fitt, B. D. L. 2006. Development and uptake of a scheme for predicting risk of severe light leaf spot on oilseed rape. Outlooks on Pest Management. 17 (6), pp. 243-245. https://doi.org/10.1564/17dec02

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 11th IUPAC International Congress of Pesticide Chemistry, Kobe, 6-11 August 2006 . pp. 140

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays

C2 - Non-edited contributions to conferences

Cools, H. J., Antoniw, J. F., Bean, T. P. and Fraaije, B. A. 2006. Transcriptome profiling of the response of Mycosphaerella graminicola isolates to triazole fungicides using cDNA microarrays. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 . pp. 28

Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene

A - Papers appearing in refereed journals

Barker, C. L., Baillie, B. K., Hammond-Kosack, K. E., Jones, J. D. G. and Jones, D. A. 2006. Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. The Plant Journal. 46, pp. 385-399. https://doi.org/10.1111/j.1365-313X.2006.02699.x

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Urban, M. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. In %Abstracts Syngenta Postgraduate Symposium, Bracknell, 14 September 2006 .

Forward genetics for gene discovery in wheat

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22

Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2006. Molecular genetics to identify genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts 9th International Fungal Biology Conference and 16th New Phytologist Symposium on Impact of Genomics on Fungal Biology, Nancy, 18-20 September 2006 . pp. 17-18

Triticum monococcum, the ancient grain which turned stone age nomads into farmers

C2 - Non-edited contributions to conferences

Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13

The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity

A - Papers appearing in refereed journals

Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. The Pathogen-Host Interactions database (PHI-base) provides insights into generic and novel themes of pathogenicity. Molecular Plant-Microbe Interactions - MPMI. 19 (12), pp. 1451-1462. https://doi.org/10.1094/MPMI-19-1451

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Maguire, K., Lee, S. and Hammond-Kosack, K. E. 2006. Functional evaluation of plant defence signalling against Fusarium ear blight disease in Arabidopsis. Abstracts 17th International Conference on Arabidopsis Research, Madison, 28 June-2 July 2006 .

The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat

A - Papers appearing in refereed journals

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2006. The Sbm 1 locus conferring resistance to Soil-borne cereal mosaic virus maps to a gene-rich region on 5DL in wheat. Genome. 49, pp. 1140-1148. https://doi.org/10.1139/G06-064

Improving the diversity of resistance in wheat to Fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of resistance in wheat to Fusarium ear blight disease. Abstracts 9th European Fusarium Seminar, Wageningen, 19-22 September 2006 . pp. 100

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Molecular Biology of Plant Pathogens Meeting, Birnam, 18-20 September 2006 .

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Annual Scientific Meeting of the British Mycological Society, Birmingham, 4-7 September 2006 . pp. 68

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts Syngenta Biology and Bioscience CASE PhD Open Day, Bracknell, 14 September 2006 .

Genome and EST analyses and expression of a gene family with putative functions in insect chemoreception

A - Papers appearing in refereed journals

Zhou, J-J., Kan, Y., Antoniw, J. F., Pickett, J. A. and Field, L. M. 2006. Genome and EST analyses and expression of a gene family with putative functions in insect chemoreception. Chemical Senses. 31, pp. 453-465. https://doi.org/10.1093/chemse/bjj050

Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease

C2 - Non-edited contributions to conferences

Lee, S., Daudi, A. and Hammond-Kosack, K. E. 2006. Improving the diversity of race-non-specific resistance mechanisms available in wheat to combat fusarium ear blight disease. Abstracts Cranfield University Postgraduate Conference, Cranfield, 29 June 2006 .

Graph-based analysis and visualization of experimental results with ONDEX

A - Papers appearing in refereed journals

Koehler, J., Baumbach, J., Taubert, J., Specht, M., Skusa, A., Ruegg, A., Rawlings, C. J., Verrier, P. J. and Philippi, S. 2006. Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics. 22 (11), pp. 1383-1390. https://doi.org/10.1093/bioinformatics/btl081

Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E. and Kanyuka, K. 2006. Host resistance to Soil-borne cereal mosaic virus and Soil-borne wheat mosiac virus. Abstracts International Conference on Advances in Plant Virology, Warwick, 5-7 April 2006 .

Light leaf spot risk reduced due to "dry" winter

G - Articles in popular magazines and other technical publications

Evans, N., Welham, S. J., Antoniw, J. F. and Fitt, B. D. L. 2006. Light leaf spot risk reduced due to "dry" winter. RRA Newsletter. No. 21, p. 1.

Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat

C2 - Non-edited contributions to conferences

Deller, S., Keon, J. P. R., Antoniw, J. F., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Investigating the role of reactive oxygen species (ROS) during Mycosphaerella graminicola infection of wheat. Abstracts 8th European Conference on Fungal Genetics, Vienna, 8-11 April 2006 . pp. 355

PHI-base: a new database for pathogen host interactions

A - Papers appearing in refereed journals

Winnenburg, R., Baldwin, T. K., Urban, M., Rawlings, C. J., Koehler, J. and Hammond-Kosack, K. E. 2006. PHI-base: a new database for pathogen host interactions. Nucleic Acids Research. 34 (1), pp. D459-D464. https://doi.org/10.1093/nar/gkj047

DPVweb: a comprehensive database of plant and fungal virus genes and genomes

A - Papers appearing in refereed journals

Adams, M. J. and Antoniw, J. F. 2006. DPVweb: a comprehensive database of plant and fungal virus genes and genomes. Nucleic Acids Research. 34, pp. D382-D385. https://doi.org/10.1093/nar/gkj023

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts Molecular Biology of Plant Pathogens Meeting, Ambleside, 19-21 September 2005 .

Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears

C2 - Non-edited contributions to conferences

Baldwin, T. K., Winnenburg, R., Koehler, J., Urban, M. and Hammond-Kosack, K. E. 2005. Bioinformatic and molecular genetic tools for identifying genes involved in the pathogenicity of Fusarium graminearum on wheat ears. Abstracts ESF-EMBO Symposium on the Comparative Genomics of Eukaryotic Microorganisms, Sant Feliu de Guixols, 12-17 November 2005 .

The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses

C2 - Non-edited contributions to conferences

Coulson, R., Urban, M., Antoniw, J. F. and Hammond-Kosack, K. E. 2005. The transcription-associated proteins of Fusarium graminearum identified by sequence clustering and profile analyses. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 113

Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Microarray transcription profiling provides insights into metabolic regulation and stress adaptation during infection of wheat by the Septoria leaf blotch pathogen, Mycosphaerella graminicola. Abstracts 23rd Fungal Genetics Conference, Asilomar, 15-20 March 2005 . pp. 137

Use of risk prediction models for integrated control of diseases of oilseed rape in the UK

C1 - Edited contributions to conferences/learned societies

Evans, N., Welham, S. J., Baierl, A., Antoniw, J. F., Papastamati, K., Van Den Bosch, F., Fitt, B. D. L., Gladders, P., Turner, J. A. and Elcock, S. 2005. Use of risk prediction models for integrated control of diseases of oilseed rape in the UK. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 649-654

Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling

C2 - Non-edited contributions to conferences

Rudd, J. J., Keon, J. P. R., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Physiological adaptation of a fungal plant pathogen to its host environment revealed through microarray transcription profiling. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

Pattern recognition based prediction of ligand-specific function of membrane proteins irrespective of sequence similarity

C2 - Non-edited contributions to conferences

Lasso-Cabrera, G., Antoniw, J. F. and Mullins, J. 2005. Pattern recognition based prediction of ligand-specific function of membrane proteins irrespective of sequence similarity. Abstracts ECCB05: European Conference on Computational Biology, Madrid, 28 September-1 October 2005 . pp. 79

New approaches for durable disease resistance in wheat

C1 - Edited contributions to conferences/learned societies

Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970

Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides

C2 - Non-edited contributions to conferences

Cools, H. J., Fraaije, B. A., Keon, J. P. R., Antoniw, J. F. and Lucas, J. A. 2005. Using cDNA microarrays to profile the response of Mycosphaerella graminicola to triazole fungicides. Abstracts COGEME Interest Group Meeting, Manchester, 8-9 November 2005 .

Use of the DPV sequence database for high-throughput analyses of plant virus sequences for taxonomic and other purposes

C2 - Non-edited contributions to conferences

Adams, M. J. and Antoniw, J. F. 2005. Use of the DPV sequence database for high-throughput analyses of plant virus sequences for taxonomic and other purposes. Abstracts 13th International Congress of Virology: Microbes in a Changing World, San Francisco, 23-28 July 2005 .

Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling

A - Papers appearing in refereed journals

Keon, J. P. R., Rudd, J. J., Antoniw, J. F., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Metabolic and stress adaptation by Mycosphaerella graminicola during sporulation in its host revealed through microarray transcription profiling. Molecular Plant Pathology. 6 (5), pp. 527-540. https://doi.org/10.1111/J.1364-3703.2005.00304.X

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts LAMP (London Area Molecular Plant Sciences) Meeting, Wye, 5 October 2005 .

DPVweb: an open access internet resource on plant viruses and virus diseases

G - Articles in popular magazines and other technical publications

Adams, M. J. and Antoniw, J. F. 2005. DPVweb: an open access internet resource on plant viruses and virus diseases. Outlooks on Pest Management. 16, pp. 268-270.

Ascorbic acid deficiency activates cell death and disease resistance responses in Arabidopsis

A - Papers appearing in refereed journals

Pavet, V., Olmos, E., Kiddle, G., Mowla, S., Kumar, S., Antoniw, J. F., Alvarez, M. E. and Foyer, C. H. 2005. Ascorbic acid deficiency activates cell death and disease resistance responses in Arabidopsis. Plant Physiology. 139, pp. 1291-1303.

Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp

A - Papers appearing in refereed journals

Eckert, M., Maguire, K. L., Urban, M., Foster, S. J., Fitt, B. D. L., Lucas, J. A. and Hammond-Kosack, K. E. 2005. Agrobacterium tumefaciens-mediated transformation of Leptosphaeria app. and Oculimacula spp. with the reef coral gene DsRed and the jellyfish gene gfp. FEMS Microbiology Letters. 253, pp. 67-74. https://doi.org/10.1016/j.femsle.2005.09.041

Membrane proteins in plant viruses

B - Book chapters etc edited externally

Adams, M. J. and Antoniw, J. F. 2005. Membrane proteins in plant viruses. in: Fischer, W. B. (ed.) Viral membrane proteins: structure, function and drug design Kluwer Academic Publishers, New York. pp. 3-19

Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1

C2 - Non-edited contributions to conferences

Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 4th Plant Genomics European Meetings (Plant-GEMs 4), Amsterdam, 20-23 September 2005 .

Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat

C2 - Non-edited contributions to conferences

Bass, C. G., Hendley, R., Adams, M. J., Hammond-Kosack, K. E. and Kanyuka, K. 2005. Molecular genetic analyses of resistance to Soil-borne cereal mosaic virus (SBCMV) in bread wheat. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Lovain-la-Neuve, 12-14 September 2005 .

Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus

C2 - Non-edited contributions to conferences

Lyons, R., Hammond-Kosack, K. E., Dickinson, M. and Kanyuka, K. 2005. Host plant resistance to Soil-borne wheat mosaic virus and Soil-borne cereal mosaic virus. Abstracts 10th Conference on Viral Diseases of Gramineae in Europe, Louvain-la-Neuve, 12-14 September 2005 . pp. 57

Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis

C2 - Non-edited contributions to conferences

Cuzick, A., Lee, S., Urban, M. and Hammond-Kosack, K. E. 2005. Functional evaluation of plant defence signalling against fusarium ear blight disease in arabidopsis. Abstracts 16th International Conference on Arabidopsis Research, Madison, 15-19 June 2005 . pp. No 530

Overview and analysis of the polyprotein cleavage sites in the family Potyviridae

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F. and Beaudoin, F. 2005. Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Molecular Plant Pathology. 6 (4), pp. 471-487. https://doi.org/10.1111/J.1364-3703.2005.00296.X

Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici)

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Rudd, J. J., Skinner, W., Hargreaves, J. A. and Hammond-Kosack, K. E. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola (anamorph Septoria tritici). Fungal Genetics and Biology. 42, pp. 376-389. https://doi.org/10.1016/j.fgb.2004.12.005

Molecular criteria for genus and species discrimination within the family Potyviridae

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F. and Fauquet, C. M. 2005. Molecular criteria for genus and species discrimination within the family Potyviridae. Archives of Virology. 150 (3), pp. 459-479. https://doi.org/10.1007/s00705-004-0440-6

A new potyvirus from tuberose (Polianthes tuberosa) in China

A - Papers appearing in refereed journals

Lin, L., Zheng, H-Y., Chen, J., Chen, J-P., Zhang, Q-Y., Zhao, M-F., Antoniw, J. F. and Adams, M. 2004. A new potyvirus from tuberose (Polianthes tuberosa) in China. Archives of Virology. 149, pp. 1107-1116. https://doi.org/10.1007/s00705-003-0289-0

DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004)

D1 - Technical reports: non-confidential

Hammond-Kosack, K. E. 2004. DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004).

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures

A - Papers appearing in refereed journals

Koehler, J., Rawlings, C. J., Verrier, P. J., Mitchell, R. A. C., Skusa, A., Ruegg, A. and Philippi, S. 2004. Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures. In Silico Biology. 5 (1), pp. 33-44.

Development of the oilseed rape light leaf spot forecast: from model to mobile phone

A - Papers appearing in refereed journals

Evans, N., Welham, S. J., Baierl, A., Antoniw, J. F. and Fitt, B. D. L. 2004. Development of the oilseed rape light leaf spot forecast: from model to mobile phone. Aspects of Applied Biology. 72, pp. 67-74.

Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi

C2 - Non-edited contributions to conferences

Maguire, K., Dickinson, M., Bowyer, P., Perrone, S., Lucas, J. A. and Hammond-Kosack, K. E. 2004. Induction of infection plaques in Oculimacula spp. the cereal eyespot fungi. Abstracts 7th European Conference on Fungal Genetics, Copenhagen, 17-20 April 2004 .

Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens

C2 - Non-edited contributions to conferences

Kornyukhin, D., Kanyuka, K., Lovell, D. J., Maguire, K., West, J. S., Mitrofanova, O. P. and Hammond-Kosack, K. E. 2004. Exploiting Triticum monococcum as a source of disease resistance traits to important UK fungal and viral pathogens. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 54

Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops

C1 - Edited contributions to conferences/learned societies

Hammond-Kosack, K. E., Urban, M., Baldwin, T., Daudi, A., Rudd, J. J., Keon, J., Lucas, J. A., Magiure, K., Kornyukhin, D., Jing, H-C., Bass, C. G. and Antoniw, J. F. 2004. Plant pathogens: how can molecular genetic information on plant pathogens assist in breeding disease resistant crops. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26 September-1 October 2004 . Regional Institute, Gosford. pp. www.cropscience.org.au

A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance

A - Papers appearing in refereed journals

Kanyuka, K., Lovell, D. J., Mitrofanova, O. P., Hammond-Kosack, K. E. and Adams, M. J. 2004. A controlled environment test for resistance to Soil-borne cereal mosaic virus (SBCMV) and its use to determine the mode of inheritance of resistance in wheat cv. Cadenza and for screening Triticum monococcum genotypes for sources of SBCMV resistance. Plant Pathology. 53 (2), pp. 154-160. https://doi.org/10.1111/j.1365-3059.2004.01000.x

A new potyvirus for tuberose (Polianthes tuberosa) in China

A - Papers appearing in refereed journals

Lin, L., Zheng, H-Y., Chen, J., Chen, J-P., Zhang, Q-Y., Zhao, M-F., Antoniw, J. F. and Adams, M. J. 2004. A new potyvirus for tuberose (Polianthes tuberosa) in China. Archives of Virology. 149, pp. 1107-1116.

The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F., Bar-Joseph, M., Brunt, A. A., Candresse, T., Foster, G. D., Martelli, G. P., Milne, R. G. and Fauquet, C. M. 2004. The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Archives of Virology. 149, pp. 1045-1060.

A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates

A - Papers appearing in refereed journals

Chen, J., Zheng, H-Y., Lin, L., Adams, M. J., Antoniw, J. F., Zhao, M-F., Shang, Y-F. and Chen, J-P. 2004. A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates. Archives of Virology. 149, pp. 349-363.

Detection and classification of allexiviruses from garlic in China

A - Papers appearing in refereed journals

Chen, J., Zheng, H-Y., Antoniw, J. F., Adams, M. J., Chen, J-P. and Lin, L. 2004. Detection and classification of allexiviruses from garlic in China. Archives of Virology. 149, pp. 435-445.

Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi

C2 - Non-edited contributions to conferences

Maguire, K., Dickinson, M., Bowyer, P., Lucas, J. A. and Hammond-Kosack, K. E. 2003. Regulation of infection plaque formation in Tapesia spp. the cereal eyespot fungi. Abstracts BSPP Presidential Meeting 2003: Plant Pathogen Genomics - from Sequence to Application, Nottingham, 15-18 December 2003 . pp. 42-43

The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia

A - Papers appearing in refereed journals

Urban, M., Mott, E., Farley, T. and Hammond-Kosack, K. E. 2003. The Fusarium graminearum MAP1 gene is essential for pathogenicity and development of perithecia. Molecular Plant Pathology. 4 (5), pp. 347-359. https://doi.org/10.1046/J.1364-3703.2003.00183.X

Vitamin C contents modulate genes involved in plant defense and development

C2 - Non-edited contributions to conferences

Codon usage bias amongst plant viruses

A - Papers appearing in refereed journals

Adams, M. J. and Antoniw, J. F. 2003. Codon usage bias amongst plant viruses. Archives of Virology. 149 (1), pp. 113-135. https://doi.org/10.1007/s00705-003-0186-6

A database and web site for plant virus sequence analysis

C1 - Edited contributions to conferences/learned societies

Adams, M. J. and Antoniw, J. F. 2003. A database and web site for plant virus sequence analysis. Rush, C. M. and Merz, U. (ed.) Proceedings 5th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Zurich, 22-25 July 2002 . American Society of Sugar Beet Technologists, Denver. pp. 25-28

Occurrence and sequences of Lily mottle virus and Lily symptomless virus in plants grown from imported bulbs in Zhejiang province, China. Brief report

A - Papers appearing in refereed journals

Zheng, H-Y., Chen, J., Zhao, M-F., Lin, L., Chen, J-P., Antoniw, J. F. and Adams, M. J. 2003. Occurrence and sequences of Lily mottle virus and Lily symptomless virus in plants grown from imported bulbs in Zhejiang province, China. Brief report. Archives of Virology. 148, pp. 2419-2428.

p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens

A - Papers appearing in refereed journals

Von Roepenack-Lahaye, E., Newman, M-A., Schornack, S., Hammond-Kosack, K. E., Lahaye, T., Jones, J. D. G., Daniels, M. J. and Dow, J. M. 2003. p -Coumaroylnoradrenaline, a novel plant metabolite implicated in tomato defense against pathogens. Journal of Biological Chemistry. 278, pp. 43373-43383.

Interactive forecasting of light leaf spot (Pyrenopeziza brassicae ) risk for winter oilseed rape on the internet

C1 - Edited contributions to conferences/learned societies

Evans, N., Steed, J. M., Welham, S. J., Antoniw, J. F., Baierl, A., Turner, J. A., Gladders, P. and Fitt, B. D. L. 2003. Interactive forecasting of light leaf spot (Pyrenopeziza brassicae ) risk for winter oilseed rape on the internet. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1067-1069

The role of antioxidant-mediated signal transduction during stress

C2 - Non-edited contributions to conferences

Foyer, C. H., Kiddle, G., Antoniw, J. F., Bernard, S. M., Verrier, P. J., Pastori, G. M. and Noctor, G. 2003. The role of antioxidant-mediated signal transduction during stress. Abstracts Keystone Meeting on Plant Biology: Functions and Control of Cell Death, Snowbird, Utah, 10-15 April 2003 .

Vitamin C contents modulate genes involved in plant defense and development

C2 - Non-edited contributions to conferences

Kiddle, G., Pastori, G. M., Antoniw, J. F., Bernard, S., Veljovic-Jovanovic, S., Verrier, P. J., Noctor, G. and Foyer, C. H. 2003. Vitamin C contents modulate genes involved in plant defense and development. Abstracts Keystone Meeting on Plant Biology: Functions and Control of Cell Death, Snowbird, Utah, 10-15 April 2003 .

Leaf vitamin C contents modulate plant defense transcripts and regulate genes that control development through hormone signaling

A - Papers appearing in refereed journals

Pastori, G. M., Kiddle, G., Antoniw, J. F., Bernard, S. M., Veljovic-Jovanovic, S., Verrier, P. J., Noctor, G. and Foyer, C. H. 2003. Leaf vitamin C contents modulate plant defense transcripts and regulate genes that control development through hormone signaling. The Plant Cell. 15 (4), pp. 939-951. https://doi.org/10.1105/tpc.010538

Effects of leaf ascorbate content on defense and photosynthesis gene expression in Arabidopsis thaliana

A - Papers appearing in refereed journals

Kiddle, G., Pastori, G. M., Bernard, S. M., Pignocchi, C., Antoniw, J. F., Verrier, P. J. and Foyer, C. H. 2003. Effects of leaf ascorbate content on defense and photosynthesis gene expression in Arabidopsis thaliana. Antioxidants and Redox Signaling. 5, pp. 23-32.

Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding

A - Papers appearing in refereed journals

Hammond-Kosack, K. E. and Parker, J. E. 2003. Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology. 14, pp. 177-193.

Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum

C2 - Non-edited contributions to conferences

Daudi, A., Urban, M. and Hammond-Kosack, K. E. 2003. Identifying pathogenicity genes and developing tools to monitor trichothecene mycotoxin production in Fusarium graminearum and F. culmorum. Abstracts SCI Student Conference on Advances in Fungal Control Strategies, Bracknell, 29 April 2003 .

Vitamin C contents modulate defense processes and plant development

C2 - Non-edited contributions to conferences

Foyer, C. H., Kiddle, G., Pastori, G. M., Antoniw, J. F., Bernard, S., Veljovic-Jovanovic, S., Verrier, P. J. and Noctor, G. 2002. Vitamin C contents modulate defense processes and plant development. Abstracts 13th Congress of the Federation of European Societies of Plant Physiology, Heraklion, 1-6 September 2002 . pp. 196

A cullin gene is induced in tomato roots forming arbuscular mycorrhizae

A - Papers appearing in refereed journals

Tahiri-Alaoui, A., Lingua, G., Avrova, A., Sampo, S., Fusconi, A., Antoniw, J. F. and Berta, G. 2002. A cullin gene is induced in tomato roots forming arbuscular mycorrhizae. Canadian Journal Of Botany. 80, pp. 607-616.

Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum

A - Papers appearing in refereed journals

Urban, M., Daniels, S., Mott, E. and Hammond-Kosack, K. E. 2002. Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum. The Plant Journal. 32 (6), pp. 961-973. https://doi.org/10.1046/j.1365-313X.2002.01480.x

Interactive forecasting on the Internet of light leaf spot (Pyrenopeziza brassicae ) risk for winter oilseed rape

C1 - Edited contributions to conferences/learned societies

Evans, N., Steed, J. M., Welham, S. J., Antoniw, J. F., Turner, J. A., Gladders, P. and Fitt, B. D. L. 2002. Interactive forecasting on the Internet of light leaf spot (Pyrenopeziza brassicae ) risk for winter oilseed rape.

Vitamin C contents modulate defence and plant development via transcriptional regulation

C2 - Non-edited contributions to conferences

Foyer, C. H., Pastori, G. M., Kiddle, G., Antoniw, J. F., Bernard, S., Veljovic-Jovanovic, S., Noctor, G. and Verrier, P. J. 2002. Vitamin C contents modulate defence and plant development via transcriptional regulation.

Alphacryptovirus: Partitiviridae

G - Articles in popular magazines and other technical publications

Antoniw, J. F. 2001. Alphacryptovirus: Partitiviridae.

TMCompare: transmembrane region sequence and structure

A - Papers appearing in refereed journals

Togawa, R. C., Antoniw, J. F. and Mullins, J. G. L. 2001. TMCompare: transmembrane region sequence and structure. Bioinformatics. 17, pp. 1238-1239. https://doi.org/10.1093/bioinformatics/17.12.1238

Plant virus transmission by plasmodiophorid fungi is associated with distinctive transmembrane regions of virus-encoded proteins

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F. and Mullins, J. G. L. 2001. Plant virus transmission by plasmodiophorid fungi is associated with distinctive transmembrane regions of virus-encoded proteins. Archives of Virology. 146 (6), pp. 1139-1153. https://doi.org/10.1007/s007050170111

Introducing an interactive Internet based forecasting system for light leaf spot of winter oilseed rape in the UK

G - Articles in popular magazines and other technical publications

Evans, N., Antoniw, J. F., Fitt, B. D. L., Gladders, P. and Welham, S. J. 2000. Introducing an interactive Internet based forecasting system for light leaf spot of winter oilseed rape in the UK. GCIRC Bulletin. 17, pp. 48-52.

Conservation of functional site structure across different membrane transport protein families

A - Papers appearing in refereed journals

Mullins, J. G. L., Knight, G. L., Sarakinou, K. S. and Antoniw, J. F. 2000. Conservation of functional site structure across different membrane transport protein families. Biochemical Society Transactions. 28 (1), p. A40.

The ileal active bile acid transport protein works bi-directionally: evidence that it is structurally evolved for two distinct functions

A - Papers appearing in refereed journals

Knight, G. L., Antoniw, J. F., Sarakinou, K. S. and Mullins, J. G. L. 2000. The ileal active bile acid transport protein works bi-directionally: evidence that it is structurally evolved for two distinct functions. Biochemical Society Transactions. 28 (1), p. A42.

Forecasting light leaf spot (Pyrenopeziza brassicae ) of winter oilseed rape (Brassica napus ) on the Internet

A - Papers appearing in refereed journals

Souter, S. D., Castells-Brooke, N. I. D., Antoniw, J. F., Welham, S. J., Fitt, B. D. L., Evans, N., Gladders, P., Turner, J. A. and Sutherland, K. 1999. Forecasting light leaf spot (Pyrenopeziza brassicae ) of winter oilseed rape (Brassica napus ) on the Internet. Aspects of Applied Biology. 55, pp. 37-42.

Molecular analysis of barley yellow mosaic virus isolates from China

A - Papers appearing in refereed journals

Chen, J., Shi, N., Cheng, Y., Diao, A., Wilson, T. M. A., Antoniw, J. F. and Adams, M. J. 1999. Molecular analysis of barley yellow mosaic virus isolates from China. Virus Research. 64, pp. 13-21. https://doi.org/10.1016/s0168-1702(99)00076-3

A two-step multiplex RT-PCR method for simultaneous detection of soil-borne wheat mosaic virus and wheat spindle streak mosaic virus from France

A - Papers appearing in refereed journals

Gitton, F., Diao, A., Ducrot, O., Antoniw, J. F., Adams, M. J. and Maraite, H. 1999. A two-step multiplex RT-PCR method for simultaneous detection of soil-borne wheat mosaic virus and wheat spindle streak mosaic virus from France. Plant Pathology. 48 (5), pp. 635-641.

Molecular comparisons amongst wheat bymovirus isolates from Asia, North America and Europe

A - Papers appearing in refereed journals

Chen, J., Sohn, A., Chen, J-P., Lei, J., Cheng, Y., Schulze, S., Steinbiss, H-H., Antoniw, J. F. and Adams, M. J. 1999. Molecular comparisons amongst wheat bymovirus isolates from Asia, North America and Europe. Plant Pathology. 48 (5), pp. 642-647. https://doi.org/10.1046/j.1365-3059.1999.00392.x

The Molecular Biology Notebook (CD-ROM)

J - Computer programs

Antoniw, J. F., Castells-Brooke, N. I. D., Moore, W. J. and Verrier, P. J. 1999. The Molecular Biology Notebook (CD-ROM). Association of Applied Biologists, Wellesbourne.

The Molecular Biology Notebook on CD-ROM - a step toward the virtual laboratory

G - Articles in popular magazines and other technical publications

Castells-Brooke, N. I. D., Mullins, R., Antoniw, J. F. and Verrier, P. J. 1999. The Molecular Biology Notebook on CD-ROM - a step toward the virtual laboratory. Journal Of Biological Education. 33 (4), pp. 223-225. https://doi.org/10.1080/00219266.1999.9655672

The occurrence of barley mild mosaic virus (BaMMV) in China and the nucleotide sequence of its coat protein gene

A - Papers appearing in refereed journals

Zheng, T., Cheng, Y., Chen, J. P., Antoniw, J. F. and Adams, M. J. 1999. The occurrence of barley mild mosaic virus (BaMMV) in China and the nucleotide sequence of its coat protein gene. Journal of Phytopathology. 147 (4), pp. 229-234. https://doi.org/10.1046/j.1439-0434.1999.147004229.x

Characterisation and partial sequence of a new furovirus of wheat in China

A - Papers appearing in refereed journals

Ye, R., Zheng, T., Chen, J., Diao, A., Adams, M. J., Yu, S. and Antoniw, J. F. 1999. Characterisation and partial sequence of a new furovirus of wheat in China. Plant Pathology. 48 (3), pp. 379-387. https://doi.org/10.1046/j.1365-3059.1999.00358.x

Sequences of European wheat mosaic virus and oat golden stripe virus and genome analysis of the genus Furovirus

A - Papers appearing in refereed journals

Diao, A., Chen, J., Gitton, F., Antoniw, J. F., Mullins, J., Hall, A. M. and Adams, M. J. 1999. Sequences of European wheat mosaic virus and oat golden stripe virus and genome analysis of the genus Furovirus. Virology. 261 (2), pp. 331-339. https://doi.org/10.1006/viro.1999.9880

Complete sequence and genome properties of Chinese wheat mosaic virus, a new furovirus from China

A - Papers appearing in refereed journals

Diao, A., Chen, J., Ye, R., Zheng, T., Yu, S., Antoniw, J. F. and Adams, M. J. 1999. Complete sequence and genome properties of Chinese wheat mosaic virus, a new furovirus from China. Journal of General Virology. 80 (5), pp. 1141-1145. https://doi.org/10.1099/0022-1317-80-5-1141

Data on plant viruses: a new CD-ROM resource

C2 - Non-edited contributions to conferences

Adams, M. J., Antoniw, J. F., Barker, H., Robinson, D., Jones, A. T. and Murant, A. F. 1998. Data on plant viruses: a new CD-ROM resource. Abstracts ICPP98 7th International Congress of Plant Pathology, Edinburgh, 9-16 August 1998 . pp. 4.3.6

Descriptions of plant viruses on CD-ROM

G - Articles in popular magazines and other technical publications

Adams, M. J., Antoniw, J. F., Barker, H., Jones, A. T., Murant, A. F. and Robinson, D. 1998. Descriptions of plant viruses on CD-ROM.

Applications of PCR in fungal-plant interactions

B - Book chapters etc edited externally

Ward, E., Tahiri-Alaoui, A. and Antoniw, J. F. 1998. Applications of PCR in fungal-plant interactions. in: Arora, D. K., Elander, R. P., Reddy, C. A. and Bridge, P. D. (ed.) Applications of PCR in mycology Wallingford, Oxon CAB International (CABI). pp. 289-307

A large duplication in the 3'-untranslated region of a subpopulation of RNA2 of the UK-M isolate of barley mild mosaic bymovirus

A - Papers appearing in refereed journals

Peerenboom, E., Jacobi, V., Cartwright, E. J., Adams, M. J., Steinbiss, H-H. and Antoniw, J. F. 1997. A large duplication in the 3'-untranslated region of a subpopulation of RNA2 of the UK-M isolate of barley mild mosaic bymovirus. Virus Research. 47, pp. 1-6. https://doi.org/10.1016/s0168-1702(96)01388-3

Complete RNA1 sequences of two UK isolates of barley mild mosaic virus: a wild-type fungus-transmissible isolate and a non-fungus-transmissible derivative

A - Papers appearing in refereed journals

Peerenboom, E., Cartwright, E. J., Foulds, I., Adams, M. J., Stratford, R., Rosner, A., Steinbiss, H-H. and Antoniw, J. F. 1997. Complete RNA1 sequences of two UK isolates of barley mild mosaic virus: a wild-type fungus-transmissible isolate and a non-fungus-transmissible derivative. Virus Research. 50, pp. 175-183. https://doi.org/10.1016/s0168-1702(97)00069-5

Accumulation of a novel PR1 protein of Nicotiana langsdorfii leaves in response to virus infection or treatment with salicylic acid

A - Papers appearing in refereed journals

Gordon-Weeks, R., Sugars, J. M., Antoniw, J. F. and White, R. F. 1997. Accumulation of a novel PR1 protein of Nicotiana langsdorfii leaves in response to virus infection or treatment with salicylic acid. Physiological and Molecular Plant Pathology. 50, pp. 263-273. https://doi.org/10.1006/pmpp.1997.0085

Strain differences between isolates of barley yellow mosaic virus in China

C1 - Edited contributions to conferences/learned societies

Shi, N., Chen, J., Adams, M. J., Zhu, F., Wang, Z., Wilson, T. M. A., Macfarlane, S. A. and Antoniw, J. F. 1997. Strain differences between isolates of barley yellow mosaic virus in China. Sherwood, J. L. and Rush, C. M. (ed.) Proceedings 3rd Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Dundee, 6-7 August 1996 . American Society of Sugar Beet Technologists, Denver. pp. 41-44

Characterisation of UK isolates of barley yellow mosaic virus

C1 - Edited contributions to conferences/learned societies

Shi, N., Adams, M. J., Chen, J., Wilson, T. M. A., Macfarlane, S. A. and Antoniw, J. F. 1997. Characterisation of UK isolates of barley yellow mosaic virus. Sherwood, J. L. and Rush, C. M. (ed.) Proceedings 3rd Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Dundee, 6-7 August, 1996 . American Society of Sugar Beet Technologists, Denver. pp. 37-40

The suppression of mannitol induced pathogenesis-related protein accumulation in tobacco by antibiotics

A - Papers appearing in refereed journals

White, R. F., Reynolds, H. C., Sugars, J. M. and Antoniw, J. F. 1996. The suppression of mannitol induced pathogenesis-related protein accumulation in tobacco by antibiotics. Physiological and Molecular Plant Pathology. 49, pp. 389-393.

A plant virus notebook for IBM-compatible computers

C1 - Edited contributions to conferences/learned societies

Antoniw, J. F., Cartwright, E. and Adams, M. J. 1996. A plant virus notebook for IBM-compatible computers. Sherwood, J. L. and Rush, C. M. (ed.) Proceedings 3rd Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Dundee, 6-7 August 1996 . American Society of Sugar Beet Technologists, Denver. pp. 189-192

Strand-specific RT-PCR detects replication of BaYMV and BaMMV in leaves and roots

C1 - Edited contributions to conferences/learned societies

Peerenboom, E., Antoniw, J. F., Adams, M. J. and Steinbiss, H-H. 1996. Strand-specific RT-PCR detects replication of BaYMV and BaMMV in leaves and roots. Sherwood, J. L. and Rush, C. M. (ed.) Proceedings 3rd Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Dundee, 6-7 August 1996 . American Society of Sugar Beet Technologists, Denver. pp. 181-183

Barley mild mosaic virus: deletions, duplications and transmission

C1 - Edited contributions to conferences/learned societies

Cartwright, E. J., Rosner, A., Peerenboom, E., Steinbiss, H-H., Antoniw, J. F. and Adams, M. J. 1996. Barley mild mosaic virus: deletions, duplications and transmission. Sherwood, J. L. and Rush, C. M. (ed.) Proceedings 3rd Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Dundee, 6-7 August 1996 . American Society of Sugar Beet Technologists, Denver. pp. 9-12

Are specific genes expressed or repressed during arbuscular mycorrhiza symbiosis, responsible for biocontrol of root pathogens?

C2 - Non-edited contributions to conferences

Tahiri-Alaoui, A. and Antoniw, J. F. 1996. Are specific genes expressed or repressed during arbuscular mycorrhiza symbiosis, responsible for biocontrol of root pathogens? Abstracts 1st International Conference on Mycorrhizae, University of California at Berkeley, 4-9 August 1996 .

Cloning of genes associated with the colonization of tomato roots by the arbuscular mycorrhizal fungus Glomus mosseae

A - Papers appearing in refereed journals

Tahiri-Alaoui, A. and Antoniw, J. F. 1996. Cloning of genes associated with the colonization of tomato roots by the arbuscular mycorrhizal fungus Glomus mosseae. Agronomie. 16, pp. 563-571.

Sequence analysis of wheat and oat furovirus capsid protein genes suggests that oat golden stripe virus is a strain of soil-borne wheat mosaic virus

A - Papers appearing in refereed journals

Chen, J. P., Shi, N-N., Wilson, T. M. A., Antoniw, J. F., Macfarlane, S. A. and Adams, M. J. 1996. Sequence analysis of wheat and oat furovirus capsid protein genes suggests that oat golden stripe virus is a strain of soil-borne wheat mosaic virus. Virus Research. 41, pp. 179-183. https://doi.org/10.1016/0168-1702(96)01271-3

Single-strand conformation polymorphism analysis of RT-PCR products of UK isolates of barley yellow mosaic virus

A - Papers appearing in refereed journals

Shi, N-N, Chen, J., Wilson, T. M. A., Macfarlane, S. A., Antoniw, J. F. and Adams, M. J. 1996. Single-strand conformation polymorphism analysis of RT-PCR products of UK isolates of barley yellow mosaic virus. Virus Research. 44, pp. 1-9. https://doi.org/10.1016/0168-1702(96)01328-7

Windows application for analysing DNA sequences

J - Computer programs

Antoniw, J. F. 1996. Windows application for analysing DNA sequences.

The complete nucleotide sequence of RNA-2 of a fungally-transmitted UK isolate of barley mild mosaic bymovirus and identification of amino acid combinations possibly involved in fungus transmission

A - Papers appearing in refereed journals

Peerenboom, E., Jacobi, V., Antoniw, J. F., Schlichter, U., Cartwright, E. J., Steinbiss, H-H. and Adams, M. J. 1996. The complete nucleotide sequence of RNA-2 of a fungally-transmitted UK isolate of barley mild mosaic bymovirus and identification of amino acid combinations possibly involved in fungus transmission. Virus Research. 40, pp. 149-159. https://doi.org/10.1016/0168-1702(95)01267-2

Suite of MS-DOS programs for identifying short regions of homology in virus sequences, which could be used as primer sites

J - Computer programs

Antoniw, J. F. 1995. Suite of MS-DOS programs for identifying short regions of homology in virus sequences, which could be used as primer sites.

Studies of UK isolates of barley yellow mosaic virus

C2 - Non-edited contributions to conferences

Shi, N., Adams, M. J., Antoniw, J. F., Chen, J., Macfarlane, S. A. and Wilson, T. M. A. 1995. Studies of UK isolates of barley yellow mosaic virus.

Movement of bymoviruses

C1 - Edited contributions to conferences/learned societies

Schenk, P., Sohn, A., Adams, M. J., Antoniw, J. F. and Steinbiss, H-H. 1995. Movement of bymoviruses. Proceedings International Symposium on 75 Years of Phytopatholgical and Resistance Research at Aschersleben, Aschersleben, 12-16 June 1995 . pp. 148-151

Movement of bymoviruses and functions of RNA2-encoded proteins of barley yellow mosaic virus

A - Papers appearing in refereed journals

Schenk, P., Sohn, A., Adams, M. J., Antoniw, J. F., Hamacher, J. and Steinbiss, H. H. 1995. Movement of bymoviruses and functions of RNA2-encoded proteins of barley yellow mosaic virus. Agronomie. 15, pp. 387-391.

An analysis of differential display shows a strong bias towards high copy number mRNAs

A - Papers appearing in refereed journals

Bertioli, D. J., Schlichter, U. H. A., Adams, M. J., Burrows, P. R., Steinbiss, H-H and Antoniw, J. F. 1995. An analysis of differential display shows a strong bias towards high copy number mRNAs. Nucleic Acids Research. 23, pp. 4520-4523. https://doi.org/10.1093/nar/23.21.4520

A new method for designing PCR primers specific for groups of sequences and its application to plant viruses

A - Papers appearing in refereed journals

Antoniw, J. F. 1995. A new method for designing PCR primers specific for groups of sequences and its application to plant viruses. Molecular Biotechnology. 4, pp. 111-119.

Molecular characterisation of UK isolates of barley yellow mosaic bymovirus

A - Papers appearing in refereed journals

Shi, N-N., Zhu, M., Chen, J., Stratford, R., Wilson, T. M. A., Antoniw, J. F., Foulds, I. J., Macfarlane, S. A. and Adams, M. J. 1995. Molecular characterisation of UK isolates of barley yellow mosaic bymovirus. Virus Research. 38, pp. 193-204. https://doi.org/10.1016/0168-1702(95)00057-W

Cloning and sequence analysis of RNA-2 of a mechanically transmitted UK isolate of barley mild mosaic bymovirus (BaMMV)

A - Papers appearing in refereed journals

Jacobi, V., Peerenboom, E., Schenk, P. M., Antoniw, J. F., Steinbiss, H-H and Adams, M. J. 1995. Cloning and sequence analysis of RNA-2 of a mechanically transmitted UK isolate of barley mild mosaic bymovirus (BaMMV). Virus Research. 37, pp. 99-111. https://doi.org/10.1016/0168-1702(95)00024-k

Movement of barley mild mosaic and barley yellow mosaic viruses in leaves and roots of barley

A - Papers appearing in refereed journals

Schenk, P. M., Antoniw, J. F., Batista, M De F., Jacobi, V., Adams, M. J. and Steinbiss, H. H. 1995. Movement of barley mild mosaic and barley yellow mosaic viruses in leaves and roots of barley. Annals of Applied Biology - AAB. 126 (2), pp. 291-305. https://doi.org/10.1111/j.1744-7348.1995.tb05367.x

Use of differential display reverse transcription PCR to detect endomycorrhiza-related gene expression in pea roots

C2 - Non-edited contributions to conferences

Dumas-Gaudot, E., Martin-Laurent, F. A., Schlichter, U., Franken, P., Antoniw, J. F., Gianinazzi-Pearson, V. and Gianinazzi, S. 1994. Use of differential display reverse transcription PCR to detect endomycorrhiza-related gene expression in pea roots. Proceedings 4th European Sympsoium on Mycorrhizas, Granada, 11-14 July 1994 . pp. 84

Effects of beet cryptic virus infection on sugar beet in field trials

A - Papers appearing in refereed journals

Xie, W. S., Antoniw, J. F., White, R. F. and Jolliffe, T. H. 1994. Effects of beet cryptic virus infection on sugar beet in field trials. Annals of Applied Biology - AAB. 124 (3), pp. 451-459. https://doi.org/10.1111/j.1744-7348.1994.tb04150.x

Expression of the PR-b1" gene in the roots of two Nicotiana species and their amphidiploid hybrid infected with virulent and avirulent races of Chalara elegans

A - Papers appearing in refereed journals

Tahiri-Alaoui, A., Dumas-Gaudot, E., Gianinazzi, S. and Antoniw, J. F. 1993. Expression of the PR-b1" gene in the roots of two Nicotiana species and their amphidiploid hybrid infected with virulent and avirulent races of Chalara elegans. Plant Pathology. 42 (5), pp. 728-736. https://doi.org/10.1111/j.1365-3059.1993.tb01559.x

A possible mechanism for the antiviral activity of pokeweed antiviral protein

A - Papers appearing in refereed journals

Chen, Z-C., Antoniw, J. F. and White, R. F. 1993. A possible mechanism for the antiviral activity of pokeweed antiviral protein. Physiological and Molecular Plant Pathology. 42, pp. 249-258.

Expression of pokeweed (Phytolacca americana) antiviral protein cDNA in Escherichia coli and its antiviral activity

A - Papers appearing in refereed journals

Chen, Z-C., Antoniw, J. F., Lin, Q. and White, R. F. 1993. Expression of pokeweed (Phytolacca americana) antiviral protein cDNA in Escherichia coli and its antiviral activity. Physiological and Molecular Plant Pathology. 42, pp. 237-247.

Nucleotide sequence of beet cryptic virus 3 dsRNA2 which encodes a putative RNA-dependent RNA polymerase

A - Papers appearing in refereed journals

Xie, W. S., Antoniw, J. F. and White, R. F. 1993. Nucleotide sequence of beet cryptic virus 3 dsRNA2 which encodes a putative RNA-dependent RNA polymerase. Journal of General Virology. 74 (7), pp. 1467-1470. https://doi.org/10.1099/0022-1317-74-7-1467

A third cryptic virus in beet (Beta vulgaris )

A - Papers appearing in refereed journals

Xie, W. S., Antoniw, J. F., White, R. F. and Woods, R. D. 1993. A third cryptic virus in beet (Beta vulgaris ). Plant Pathology. 42 (3), pp. 465-470. https://doi.org/10.1111/j.1365-3059.1993.tb01524.x

Expression of the PR-b1"gene in roots of two Nicotiana species and their amphidiploid hybrid infected with virulent and avirulent races of Chalara elegans

C1 - Edited contributions to conferences/learned societies

Tahiri-Alaoui, A., Antoniw, J. F., Dumas-Gaudot, E. and Gianinazzi, S. 1993. Expression of the PR-b1"gene in roots of two Nicotiana species and their amphidiploid hybrid infected with virulent and avirulent races of Chalara elegans. Fritig, B. and Legrand, M. (ed.) Mechanisms of Plant Defense Responses . Kluwer Academic Publishers, Dordrecht, Netherlands. pp. 373

Suite of MS-DOS programs for analysing and comparing plant virus sequences with sequences in EMBL and GenBank databases

J - Computer programs

Antoniw, J. F. 1992. Suite of MS-DOS programs for analysing and comparing plant virus sequences with sequences in EMBL and GenBank databases.

Weak expression of the pathogenesis related PR-b1 gene and localization of related protein during symbiotic endomycorrhizal interactions in tobacco roots

A - Papers appearing in refereed journals

Gianinazzi-Pearson, V., Tahiri-Alaoui, A., Antoniw, J. F., Gianinazzi, S. and Dumas, E. 1992. Weak expression of the pathogenesis related PR-b1 gene and localization of related protein during symbiotic endomycorrhizal interactions in tobacco roots. Endocytobiosis and Cell Research. 8, pp. 177-185.

Plant virus sequences in the EMBL and GenBank nucleotide sequence databases

A - Papers appearing in refereed journals

Antoniw, J. F. 1992. Plant virus sequences in the EMBL and GenBank nucleotide sequence databases. Binary. 4, pp. 169-173.

Identification of Gaeumannomyces graminis var. tritici and G. graminis var. avenae using a DNA probe and non-molecular methods (take-all)

A - Papers appearing in refereed journals

Bateman, G. L., Ward, E. and Antoniw, J. F. 1992. Identification of Gaeumannomyces graminis var. tritici and G. graminis var. avenae using a DNA probe and non-molecular methods (take-all). Mycological Research. 96, pp. 737-742.

Induction and characterisation of some of the pathogenesis-related proteins in sugar beet

A - Papers appearing in refereed journals

Fleming, T. M., Mccarthy, D. A., White, R. F., Antoniw, J. F. and Mikkelsen, J. D. 1991. Induction and characterisation of some of the pathogenesis-related proteins in sugar beet. Physiological and Molecular Plant Pathology. 39, pp. 147-160.

Effect of pokeweed antiviral protein (PAP) on the infection of plant viruses

A - Papers appearing in refereed journals

Chen, Z. C., White, R. F., Antoniw, J. F. and Lin, Q. 1991. Effect of pokeweed antiviral protein (PAP) on the infection of plant viruses. Plant Pathology. 40 (4), pp. 612-620. https://doi.org/10.1111/j.1365-3059.1991.tb02426.x

Pathogenesis-related proteins and induced resistance

C1 - Edited contributions to conferences/learned societies

Antoniw, J. F. and White, R. F. 1990. Pathogenesis-related proteins and induced resistance. Conejero, V. and Vanloon, L. C. (ed.) Workshop on pathogenesis-related proteins in plants. Fundacion Juan March, Madrid.

Cryptic viruses of beet and other plants

B - Book chapters etc edited externally

Antoniw, J. F., White, R. F. and Xie, W. 1990. Cryptic viruses of beet and other plants. in: Recognition and response in plant-virus interactions Springer-Verlag, Berlin.

The effects of a virus inhibitor, NS-83, derived from plants, on virus infection and multiplication in tobacco

A - Papers appearing in refereed journals

Li, H. F., White, R. F. and Antoniw, J. F. 1990. The effects of a virus inhibitor, NS-83, derived from plants, on virus infection and multiplication in tobacco. Journal of Phytopathology. 128 (4), pp. 299-305. https://doi.org/10.1111/j.1439-0434.1990.tb04278.x

Investigations into the aetiology of Ramu stunt, a new sugarcane diseases in Papua and New Guinea.

A - Papers appearing in refereed journals

Jones, P., Antoniw, J. F. and Eastwood, D. 1989. Investigations into the aetiology of Ramu stunt, a new sugarcane diseases in Papua and New Guinea. l'Agronomie Tropicale. 44, pp. 179-184.

Detection of beet cryptic viruses 1 and 2 in a wide range of beet plants using cDNA probes.

A - Papers appearing in refereed journals

Xie, W., Antoniw, J. F. and White, R. F. 1989. Detection of beet cryptic viruses 1 and 2 in a wide range of beet plants using cDNA probes. Plant Pathology. 38, pp. 527-533.

The use of plant viruses as inoculants

B - Book chapters etc edited externally

White, R. F. and Antoniw, J. F. 1989. The use of plant viruses as inoculants. in: Campbell, R. and Macdonald, R. M. (ed.) Microbial inoculation of crop plants IRL Press, Oxford. pp. 79-87

RNA/cDNA hybridization studies of UK isolates of barley yellow mosaic virus.

A - Papers appearing in refereed journals

Batista, M. F., Antoniw, J. F., Swaby, J. F., Jones, P. and Adams, M. J. 1989. RNA/cDNA hybridization studies of UK isolates of barley yellow mosaic virus. Plant Pathology. 38 (2), pp. 226-229. https://doi.org/10.1111/j.1365-3059.1989.tb02137.x

Fungally-transmitted viruses of cereals in the UK.

A - Papers appearing in refereed journals

Adams, M. J., Batista, M. De. F., Swaby, A. G. and Antoniw, J. F. 1989. Fungally-transmitted viruses of cereals in the UK. Bulletin EPPO. 19, pp. 573-577. https://doi.org/10.1111/j.1365-2338.1989.tb00434.x

Plant interferons: a wish or a reality?

B - Book chapters etc edited externally

Gianinazzi, S., Dumas, E., Antoniw, J. F. and White, R. F. 1988. Plant interferons: a wish or a reality? in: Experimental and conceptual plant pathology . Eds. R.S. Singh, U.S. Singh, W.M. Hess & D.J. Weber. New Delhi : Oxfor & IBH Publishing Co. pp. 569-574

Immunocytochemical location of pathogenisis-related b1 protein induced in tobacco mosaic virus-infected or polyacrylic acid-treated tobacco plants.

A - Papers appearing in refereed journals

Dumas, E., Lherminier, J., Gianinazzi, S., White, R. F. and Antoniw, J. F. 1988. Immunocytochemical location of pathogenisis-related b1 protein induced in tobacco mosaic virus-infected or polyacrylic acid-treated tobacco plants. Journal of General Virology. 69 (10), pp. 2687-2694. https://doi.org/10.1099/0022-1317-69-10-2687

The role of pathogenesis-related proteins.

G - Articles in popular magazines and other technical publications

Antoniw, J. F. and White, R. F. 1987. The role of pathogenesis-related proteins.

The detection of PR-1 type proteins in various plant species by immunoelectroblotting.

A - Papers appearing in refereed journals

White, R. F., Rybicki, E. P., Von Wechmar, M. B., Decker, J. L. and Antoniw, J. F. 1987. The detection of PR-1 type proteins in various plant species by immunoelectroblotting. Journal of General Virology. 68, pp. 2043-2048. https://doi.org/10.1099/0022-1317-68-7-2043

Molecular cloning of beet cryptic virus ds RNA.

G - Articles in popular magazines and other technical publications

Antoniw, J. F. 1987. Molecular cloning of beet cryptic virus ds RNA.

The detection of acute paralysis virus in Varroa jacobsoni by the use of a simple indirect ELISA.

A - Papers appearing in refereed journals

Allen, M. F., Ball, B. V., White, R. F. and Antoniw, J. F. 1986. The detection of acute paralysis virus in Varroa jacobsoni by the use of a simple indirect ELISA. Journal of Apicultural Research. 25, pp. 100-105.

Changes with time in the destribution of virus and PR protein around single local lesions of TMV infected tobacco.

A - Papers appearing in refereed journals

Antoniw, J. F. and White, R. F. 1986. Changes with time in the destribution of virus and PR protein around single local lesions of TMV infected tobacco. Plant Molecular Biology. 6, pp. 145-149.

Molecular cloning of the double-stranded RNA of beet cryptic viruses.

G - Articles in popular magazines and other technical publications

Antoniw, J. F., Linthorst, H. J. M., White, R. F. and Bol, J. F. 1986. Molecular cloning of the double-stranded RNA of beet cryptic viruses. Journal of General Virology. 67 (9), pp. 2047-2051. https://doi.org/10.1099/0022-1317-67-9-2047

Molecular cloning of beet cryptic virus dsRNA.

G - Articles in popular magazines and other technical publications

White, R. F. and Antoniw, J. F. 1986. Molecular cloning of beet cryptic virus dsRNA.

The chemical induction of PR(6) proteins and resistance to TMV infection in tobacco

A - Papers appearing in refereed journals

White, R. F., Dumas, E., Shaw, P. and Antoniw, J. F. 1986. The chemical induction of PR(6) proteins and resistance to TMV infection in tobacco. Antiviral Research. 6, pp. 177-185.

Molecular cloning of the double-stranded RNA of beet cryptic viruses.

A - Papers appearing in refereed journals

Antoniw, J. F., Linthorst, H. J. M., White, R. F. and Bol, J. F. 1986. Molecular cloning of the double-stranded RNA of beet cryptic viruses. Journal of General Virology. 67, pp. 2047-2051.

The detection of pr (b) protein and tmv by elisa in systemic and localized virus-infections of tobacco

A - Papers appearing in refereed journals

Antoniw, J. F., White, R. F., Barbara, D. J., Jones, P. and Longley, A. 1985. The detection of pr (b) protein and tmv by elisa in systemic and localized virus-infections of tobacco. Plant Molecular Biology. 4 (1), pp. 55-60. https://doi.org/10.1007/bf02498715

Biochemical and serological characterization of b-proteins from nicotiana species

A - Papers appearing in refereed journals

Ahl, P., Antoniw, J. F., White, R. F. and Gianinazzi, S. 1985. Biochemical and serological characterization of b-proteins from nicotiana species. Plant Molecular Biology. 4 (1), pp. 31-37. https://doi.org/10.1007/bf02498713

Virus and pathogenesis-related protein accumulation after tobacco-mosaic-virus infection of tobacco

A - Papers appearing in refereed journals

Antoniw, J. F., White, R. F., Barbara, D. J. and Longley, A. 1984. Virus and pathogenesis-related protein accumulation after tobacco-mosaic-virus infection of tobacco. Biochemical Society Transactions. 12 (5), pp. 828-828. https://doi.org/10.1042/bst0120828

An examination of the effect of human alpha-interferons on the infection and multiplication of tobacco mosaic-virus in tobacco

A - Papers appearing in refereed journals

Antoniw, J. F., White, R. F. and Carr, J. P. 1984. An examination of the effect of human alpha-interferons on the infection and multiplication of tobacco mosaic-virus in tobacco. Phytopathologische Zeitschrift-Journal of Phytopathology. 109 (4), pp. 367-371.

Agrobacterium-rhizogenes-transformed and untransformed tobacco plants have similar pathogenesis related protein concentrations and similar susceptibility to virus-infection

A - Papers appearing in refereed journals

Ooms, G., White, R. F., Antoniw, J. F. and Gibson, R. W. 1984. Agrobacterium-rhizogenes-transformed and untransformed tobacco plants have similar pathogenesis related protein concentrations and similar susceptibility to virus-infection. Plant science letters. 35 (2), pp. 169-173. https://doi.org/10.1016/0304-4211(84)90191-3

Pathogenesis-related proteins in plants and tissues of nicotiana-tabacum transformed by agrobacterium-tumefaciens

A - Papers appearing in refereed journals

Antoniw, J. F., Ooms, G., White, R. F., Wullems, G. J. and Vanvlotendoting, L. 1983. Pathogenesis-related proteins in plants and tissues of nicotiana-tabacum transformed by agrobacterium-tumefaciens. Plant Molecular Biology. 2 (6), pp. 317-320. https://doi.org/10.1007/bf01578593

Pathogenesis-related proteins in crown gall tissue

A - Papers appearing in refereed journals

Antoniw, J. F. 1983. Pathogenesis-related proteins in crown gall tissue. Netherlands Journal of Plant Pathology. 89 (6), pp. 312-313. https://doi.org/10.1007/bf01995274

Electrophoretic and serological comparisons of pathogenesis-related (b) proteins from different plant-species

A - Papers appearing in refereed journals

Vanloon, L. C., Gianinazzi, S., White, R. F., Abujawdah, Y., Ahl, P., Antoniw, J. F., Boller, T., Camachohenriquez, A., Conejero, V., Coussirat, J. C., Goodman, R. N., Maiss, E., Redolfi, P. and Wilson, T. M. A. 1983. Electrophoretic and serological comparisons of pathogenesis-related (b) proteins from different plant-species. Netherlands Journal of Plant Pathology. 89 (6), pp. 293-303. https://doi.org/10.1007/BF01995264

The effects of aspirin and polyacrylic-acid on the multiplication and spread of tmv in different cultivars of tobacco with and without the n-gene

A - Papers appearing in refereed journals

White, R. F., Antoniw, J. F., Carr, J. P. and Woods, R. D. 1983. The effects of aspirin and polyacrylic-acid on the multiplication and spread of tmv in different cultivars of tobacco with and without the n-gene. Phytopathologische Zeitschrift-Journal of Phytopathology. 107 (3), pp. 224-232.

Direct control of virus diseases

A - Papers appearing in refereed journals

White, R. F. and Antoniw, J. F. 1983. Direct control of virus diseases. Crop Protection. 2 (3), pp. 259-271. https://doi.org/10.1016/0261-2194(83)90001-7

Biochemical-properties of the pathogenesis-related proteins from tobacco

A - Papers appearing in refereed journals

Antoniw, J. F. and White, R. F. 1983. Biochemical-properties of the pathogenesis-related proteins from tobacco. Netherlands Journal of Plant Pathology. 89 (6), pp. 255-264. https://doi.org/10.1007/bf01995260

Latent messenger RNA in tobacco (Nicotiana tabacum)

A - Papers appearing in refereed journals

Carr, J. P., Antoniw, J. F., White, R. F. and Wilson, T. M. A. 1982. Latent messenger RNA in tobacco (Nicotiana tabacum). Biochemical Society Transactions. 10, pp. 353-354.

Distribution of the ppp(A2′p)nA-binding protein and interferon-related enzymes in animals, plants, and lower organisms

A - Papers appearing in refereed journals

Cayley, P. J., White, R. F., Antoniw, J. F., Walesby, N. J. and Kerr, I. M. 1982. Distribution of the ppp(A2′p)nA-binding protein and interferon-related enzymes in animals, plants, and lower organisms. Biochemical and Biophysical Research Communications. 108 (3), pp. 1243-1250. https://doi.org/10.1016/0006-291x(82)92133-7

Comparison of the effects of salicylic-acid and ethephon with virus-induced hypersensitivity and acquired-resistance in tobacco

A - Papers appearing in refereed journals

Vanloon, L. C. and Antoniw, J. F. 1982. Comparison of the effects of salicylic-acid and ethephon with virus-induced hypersensitivity and acquired-resistance in tobacco. Netherlands Journal of Plant Pathology. 88 (6), pp. 237-256.

The presence of pathogenesis-related proteins in callus of xanthi-nc tobacco

A - Papers appearing in refereed journals

Antoniw, J. F., Kueh, J. S. H., Walkey, D. G. A. and White, R. F. 1981. The presence of pathogenesis-related proteins in callus of xanthi-nc tobacco. Phytopathologische Zeitschrift-Journal of Phytopathology. 101 (2), pp. 179-184.

The effects of aspirin and polyacrylic-acid on soluble leaf proteins and resistance to virus-infection in 5 cultivars of tobacco

A - Papers appearing in refereed journals

Antoniw, J. F. and White, R. F. 1980. The effects of aspirin and polyacrylic-acid on soluble leaf proteins and resistance to virus-infection in 5 cultivars of tobacco. Phytopathologische Zeitschrift-Journal of Phytopathology. 98 (4), pp. 331-341.

Comparison of Three Pathogenesis-related Proteins from Plants of Two Cultivars of Tobacco Infected with TMV

A - Papers appearing in refereed journals

Antoniw, J. F., Ritter, C. E., Pierpoint, W. S. and Vanloon, L. C. 1980. Comparison of Three Pathogenesis-related Proteins from Plants of Two Cultivars of Tobacco Infected with TMV . Journal of General Virology. 47 (1), pp. 79-87. https://doi.org/10.1099/0022-1317-47-1-79

Purification of a tobacco leaf protein associated with resistance to virus infection

A - Papers appearing in refereed journals

Antoniw, J. F. and Pierpoint, W. S. 1978. Purification of a tobacco leaf protein associated with resistance to virus infection. Biochemical Society Transactions. 6, pp. 248-250. https://doi.org/10.1042/bst0060248

The Purification and Properties of One of the ‘b’ Proteins from Virus-Infected Tobacco Plants

A - Papers appearing in refereed journals

Antoniw, J. F. and Pierpoint, W. S. 1978. The Purification and Properties of One of the ‘b’ Proteins from Virus-Infected Tobacco Plants. Journal of General Virology. 39 (2), pp. 343-350. https://doi.org/10.1099/0022-1317-39-2-343

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