DFW - Designing Future Wheat - Work package 2 (WP2) - Added value and resilience

Repository project

Project dates01 Apr 2017 to end of 31 Mar 2022
Researchers
Principal InvestigatorKim Hammond-Kosack
FunderBiotechnology and Biological Sciences Research Council
Project numberI0250
DepartmentPlant Sciences
Research fish codeBBS/E/C/000I0250
Grant IDBBS/E/C/000I0250

Outputs

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A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS)

B - Book chapters etc edited externally
Desjardins, S., Kanyuka, K. and Higgins, J. D. 2020. A Cytological Analysis of Wheat Meiosis Targeted by Virus-Induced Gene Silencing (VIGS). in: Pradillo, M. and Heckmann, S. (ed.) Plant Meiosis. Methods in Molecular Biology, vol 2061. New York, NY Humana Press Inc. pp. 319-330

Spatial distribution of functional components in the starchy endosperm of wheat grains

A - Papers appearing in refereed journals
Shewry, P. R., Wan, Y., Hawkesford, M. J. and Tosi, P. 2019. Spatial distribution of functional components in the starchy endosperm of wheat grains. Journal of Cereal Science.

Wheat Seed Proteins: Factors Influencing Their Content, Composition, and Technological Properties, and Strategies to Reduce Adverse Reactions

A - Papers appearing in refereed journals
Rustgi, S., Shewry, P. R., Brouns, F., Deleu, L. J. and Delcour, J. A 2019. Wheat Seed Proteins: Factors Influencing Their Content, Composition, and Technological Properties, and Strategies to Reduce Adverse Reactions. Comprehensive Reviews in Food Science and Food Safety.

Characterisation of proteolytic enzymes of Eurygaster integriceps Put. (Sunn bug), a major pest of cereals

A - Papers appearing in refereed journals
Konarev, A., Dolgikh, V., Senderskiy, I., Konarev, A., Kapustkina, A and Lovegrove, A. 2019. Characterisation of proteolytic enzymes of Eurygaster integriceps Put. (Sunn bug), a major pest of cereals. Journal Of Asia-Pacific Entomology. 22 (1), pp. 379-385.

Identification of a major QTL and associated marker for high arabinoxylan fibre in white wheat flour

A - Papers appearing in refereed journals
Lovegrove, A., Wingen, L. U., Plummer, A., Wood, A., Passmore, D., Kosik, O., Freeman, J., Mitchell, R. A. C., Ulker, M., Tremmel-Bede, K., Rakszegi, M., Bedő, Z., Petterant, M.-R., Charmet, G., Leverington Waite, M., Orford, S., Burridge, A., Pellny, T. K., Shewry, P. R. and Griffiths, S. 2019. Identification of a major QTL and associated marker for high arabinoxylan fibre in white wheat flour. Plant Biotechnology Journal.

Exploring the role of cereal dietary fiber in digestion

A - Papers appearing in refereed journals
Gouseti, O., Lovegrove, A., Kosik, O., Fryer, P. J., Mills, E. C. N., Gates, F. K., Tucker, G., Latty, C., Shewry, P. R. and Bakalis, S. 2019. Exploring the role of cereal dietary fiber in digestion. Journal of Agricultural and Food Chemistry. 67 (30), pp. 8419-8424.

Adverse Reactions to Wheat or Wheat Components

A - Papers appearing in refereed journals
Brouns, F., Van Rooy, G., Shewry, P. R., Rustgi, S. and Jonkers, D. 2019. Adverse Reactions to Wheat or Wheat Components . Comprehensive Reviews in Food Science and Food Safety. pp. 1-20.

What is gluten- why is it special?

A - Papers appearing in refereed journals
Shewry, P. R. 2019. What is gluten- why is it special? Frontiers in Nutrition.

Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction

C2 - Non-edited contributions to conferences
Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. Analysis of small RNAs in the Zymoseptoria tritici – wheat interaction. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis

A - Papers appearing in refereed journals
Chakraborty, N., Kanyuka, K., Kumar Jaiswal, D., Kumar, A., Arora, V., Malik, A., Gupta, N., Hooley, R. and Raghuram, N. 2019. GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis. Scientific Reports. 9, p. 5838.

Oat bran, but not its isolated bioactive β-glucans or polyphenols, have a bifidogenic effect in an in vitro fermentation model of the gut microbiota

A - Papers appearing in refereed journals
Kristek, A., Wiese, M., Heuer, P., Kosik, O., Schar, M. Y., Soycan, G., Alsharif, S., Kuhnle, G. G. C., Walton, G. and Spencer, J. P. E. 2019. Oat bran, but not its isolated bioactive β-glucans or polyphenols, have a bifidogenic effect in an in vitro fermentation model of the gut microbiota. British Journal Of Nutrition. 121 (5), pp. 549-559.

Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici

C2 - Non-edited contributions to conferences
Dodds, P., Upadhyaya, N., Ortiz, D., Li, F., Chen, J., Miller, M., Luo, M., Mago, R., Ellis, J., Sperschneider, J., Nguyen-Phuc, H., Bouton, C., Steffenson, B., Hirsch, C., Silverstein, K., Park, R., Kanyuka, K. and Figueroa, M. 2019. Using virulence mutants to identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. 30th Fungal Genetics Conference. Pacific Grove, California, USA 12 Mar 2019

Advances in sorghum and millet research special issue

A - Papers appearing in refereed journals
Shewry, P. R. 2019. Advances in sorghum and millet research special issue. Journal of Cereal Science. 85, p. A1.

Drought stress affects the protein and dietary fiber content of wholemeal wheat flour in wheat/Aegilops addition lines

A - Papers appearing in refereed journals
Rakszegi, M., Darkó, E., Lovegrove, A., Molnár, M., Lang, L., Bedő, Z, Molnár-Láng, M. and Shewry, P. R. 2019. Drought stress affects the protein and dietary fiber content of wholemeal wheat flour in wheat/Aegilops addition lines. PLOS ONE. 14 (2), p. e0211892.

Determination of the prebiotic activity of wheat arabinogalactan peptide (AGP) using batch culture fermentation

A - Papers appearing in refereed journals
Harris, S., Powers, S. J., Monteagudo-Mera, A., Kosik, O., Lovegrove, A., Shewry, P. R. and Charalampopoulos, D. 2019. Determination of the prebiotic activity of wheat arabinogalactan peptide (AGP) using batch culture fermentation. European Journal Of Nutrition.

Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat.

Conference poster
Tidd, H., Bryant, R and Kanyuka, K. 2019. Characterisation of major genes mediating resistance to Septoria tritici blotch disease in wheat. International Symposium on Cereal Leaf Blights 2019. University College Dublin, Dublin, Ireland 22 May 2019

Improving wheat as a source of iron and zinc for global nutrition

A - Papers appearing in refereed journals
Balk, J., Connorton J. M., Wan, Y., Lovegrove, A., Moore, K. L., Uauy, C., Sharp, P. A. and Shewry, P. R. 2019. Improving wheat as a source of iron and zinc for global nutrition. Nutrition Bulletin. 44 (1), pp. 53-59.

Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici

C2 - Non-edited contributions to conferences
Upadhyaya, N. M., Ortiz, D., Chen, J., Ellis, J., Li, F., Mago, R., Kanyuka, K., Figueroa, M., Park, R. F. and Dodds, P. 2018. Using virulence mutants to Identify Avr genes in the wheat stem rust fungus, Puccinia graminis f. sp. tritici. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). doi:10.1094/PHYTO-108-10-S1.1

Fungal G-protein-coupled receptors: mediators of pathogenesis and targets for disease control

A - Papers appearing in refereed journals
Brown, N. A., Schrevens, S., Van Dijck, P. and Goldman, G. H. 2018. Fungal G-protein-coupled receptors: mediators of pathogenesis and targets for disease control. Nature Microbiology. 3 (4), pp. 402-414.

Comparison of the dietary fibre composition of old and modern durum wheat (Triticum turgidum spp. durum) genotypes

A - Papers appearing in refereed journals
De Santis, M. A., Kosik, O., Passmore, D., Flagella, Z., Shewry, P. R. and Lovegrove, A. 2018. Comparison of the dietary fibre composition of old and modern durum wheat (Triticum turgidum spp. durum) genotypes. Food Chemistry. 244, pp. 304-310.

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

A - Papers appearing in refereed journals
Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808.

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Kettles, G. J., Bayon, C., Sparks, C. A., Canning, G., Kanyuka, K. and Rudd, J. J. 2018. Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici. New Phytologist. 217 (1), pp. 320-331.

Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat

A - Papers appearing in refereed journals
Derbyshire, M. C., Gohari, A. M., Mehrabi, R., Kilaru, S., Steinberg, G., Ali, S., Bailey, A., Hammond-Kosack, K. E., Kema, G. H. J. and Rudd, J. J. 2018. Phosphopantetheinyl transferase (Ppt)-mediated biosynthesis of lysine, but not siderophore or DHN melanin, is required for virulence of Zymoseptoria tritici on wheat. Scientific Reports. 8 (17069).

Gradients in compositions in the starchy endosperm of wheat have implications for milling and processing

A - Papers appearing in refereed journals
Tosi, P., He, J., Lovegrove, A., Gonzalez-Thuillier, I., Penson, S. and Shewry, P. R. 2018. Gradients in compositions in the starchy endosperm of wheat have implications for milling and processing. Trends In Food Science & Technology. 82, pp. 1-7.

The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

A - Papers appearing in refereed journals
Hellin, P., King, R., Urban, M., Hammond-Kosack, K. E. and Legreve, A 2018. The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1). Frontiers in Microbiology. 9 (1385).

Effects of Organic and Conventional Crop Nutrition on Profiles of Polar Metabolites in Grain of Wheat

A - Papers appearing in refereed journals
Shewry, P. R., Rakszegi, M., Lovegrove, A., Amos, D., Corol, D. I., Tawfike, A., Miko, P. and Ward, J. L. 2018. Effects of Organic and Conventional Crop Nutrition on Profiles of Polar Metabolites in Grain of Wheat. Journal of Agricultural and Food Chemistry.

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

A - Papers appearing in refereed journals
King, R., Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2018. Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics. 19, p. 269.

Plant pathogen effector proteins as manipulators of host microbiomes?

A - Papers appearing in refereed journals
Snelder, N. C., Kettles, G. J., Rudd, J. J. and Thomma, B. P. H. J. 2018. Plant pathogen effector proteins as manipulators of host microbiomes? Molecular Plant Pathology. 19 (2), pp. 257-259.

Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi

A - Papers appearing in refereed journals
Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115.

Foxtail mosaic virus: a new viral vector for protein expression in cereals

A - Papers appearing in refereed journals
Bouton, C., King, R., Chen, H., Azhakanandam, K., Bieri, S., Hammond-Kosack, K. E. and Kanyuka, K. 2018. Foxtail mosaic virus: a new viral vector for protein expression in cereals. Plant Physiology. 177 (4), pp. 1352-1367.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

A - Papers appearing in refereed journals
International Wheat Genome Sequencing Consortium (IWGSC), Kanyuka, K. and King, R. 2018. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 361 (6403), p. eaar7191.

Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran

A - Papers appearing in refereed journals
Schar, M. Y., Corona, G., Soycan, G., Dine, C., Kristek, A., Alsahrif, S. N. S., Behrends, V., Lovegrove, A., Shewry, P. R. and Spencer, J. P. E. 2018. Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran. Molecular Nutrition & Food Research. 62 (2), p. 1700499.

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374.

Do ancient types of wheat have health benefits compared with modern bread wheat?

A - Papers appearing in refereed journals
Shewry, P. R. 2018. Do ancient types of wheat have health benefits compared with modern bread wheat? Journal of Cereal Science. 79, pp. 469-476.

Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress

A - Papers appearing in refereed journals
Curtis, T. Y., Bo, V., Tucker A. and Halford, N. G. 2018. Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress. Food and Energy Security. 7 (1), p. e00126.

Data set of enzyme fingerprinting of dietary fibre components (arabinoxylan and β-glucan) in old and modern Italian durum wheat genotypes

A - Papers appearing in refereed journals
De Santis, M. A., Kosik, O., Passmore, D., Flagella, Z., Shewry, P. R. and Lovegrove, A. 2018. Data set of enzyme fingerprinting of dietary fibre components (arabinoxylan and β-glucan) in old and modern Italian durum wheat genotypes. Data in Brief. 16 (February), pp. 1062-1068.

Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains

C2 - Non-edited contributions to conferences
Chen, H., Bayon, C., King, R., Torriani, S. F. F., Bieri, S., Kanyuka, K., Hammond-Kosack, K. E. and Rudd, J. J. 2017. Phenotypic, comparative genomic and transcriptomic analysis of recently collected European Zymoseptoria tritici strains. Zymoseptoria Meeting, 2017, Kiel, Germany.

Shaping an Optimal Soil by Root–Soil Interaction

A - Papers appearing in refereed journals
Jin, K., White, P. J., Whalley, W. R., Shen, J. and Shi, L. 2017. Shaping an Optimal Soil by Root–Soil Interaction. Trends in Plant Science. 22 (10), pp. 823-829.

RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals

A - Papers appearing in refereed journals
Machado, A., Brown, N. A., Urban, M., Kanyuka, K. and Hammond-Kosack, K. E. 2017. RNAi as an emerging approach to control Fusarium Head Blight disease and mycotoxin contamination in cereals. Pest Management Science. 74 (4), pp. 790-799.

A review of wheat diseases – a field perspective

A - Papers appearing in refereed journals
Figueroa, M., Hammond-Kosack, K. E. and Solomon, P. S. 2017. A review of wheat diseases – a field perspective. Molecular Plant Pathology. 19 (6), pp. 1523-1536.