[20:20 Wheat] Protecting yield potential of wheat

Project (past)

Project dates01 Apr 2012 to end of 31 Mar 2017
Researchers
Principal InvestigatorKim Hammond-Kosack
Project numberS5203
5203
DepartmentPlant Biology and Crop Science (PBCS)
Research fish codeBBS/E/C/00005203
Grant IDBBS/E/C/00005203

Outputs

Sort by: Date Title

sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem

A - Papers appearing in refereed journals
Kettles, G. J., Hofinger, B. J., Hu, P., Bayon, C., Rudd, J. J., Balmer, D., Courbot, M., Hammond-Kosack, K. E., Scalliet, G. and Kanyuka, K. 2019. sRNA profiling combined with gene function analysis reveals a lack of evidence for cross-kingdom RNAi in the wheat – Zymoseptoria tritici pathosystem. Frontiers in Plant Science. 10 (892).

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

A - Papers appearing in refereed journals
Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808.

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Kettles, G. J., Bayon, C., Sparks, C. A., Canning, G., Kanyuka, K. and Rudd, J. J. 2018. Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici. New Phytologist. 217 (1), pp. 320-331.

The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1).

A - Papers appearing in refereed journals
Hellin, P., King, R., Urban, M., Hammond-Kosack, K. E. and Legreve, A 2018. The adaptation of Fusarium culmorum to DMI Fungicides Is Mediated by Major Transcriptome Modifications in Response to Azole Fungicide, Including the Overexpression of a PDR Transporter (FcABC1). Frontiers in Microbiology. 9 (1385).

Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum

A - Papers appearing in refereed journals
King, R., Brown, N. A., Urban, M. and Hammond-Kosack, K. E. 2018. Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics. 19, p. 269.

Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi

A - Papers appearing in refereed journals
Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

A - Papers appearing in refereed journals
International Wheat Genome Sequencing Consortium (IWGSC), Kanyuka, K. and King, R. 2018. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science - AAAS. 361 (6403), p. eaar7191.

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374.

Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

A - Papers appearing in refereed journals
Urban, M., Cuzick, A., Rutherford, K., Irvine, A. G., Pedro, H., Pant, R., Sadanadan, V., Khamari, L., Billal, S., Mohanty, Sagar and Hammond-Kosack, K. E. 2017. PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database. Nucleic Acids Research. 45 (D1), pp. D604-D610.

mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach

A - Papers appearing in refereed journals
Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3).

Annotation of Fusarium graminearum (PH-1) version 5.0

A - Papers appearing in refereed journals
King, R., Urban, M. and Hammond-Kosack, K. E. 2017. Annotation of Fusarium graminearum (PH-1) version 5.0. Genome Announcements. 5 (2), pp. e01479-16.

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia

A - Papers appearing in refereed journals
Yang, P., Habekuss, A., Hofinger, Bernhard J., Kanyuka, K., Kilian, B., Graner, Andreas, Ordon, Frank and Stein, Nils 2017. Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theoretical and Applied Genetics. 130 (2), pp. 331-344.

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

A - Papers appearing in refereed journals
King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672.

Searching for novel targets to control wheat head blight disease—I-Protein identification,3D modeling and virtual screening

A - Papers appearing in refereed journals
Martens, N. F., Bresso, E., Togawa, R. C., Urban, M., Antoniw, J. F., Maigret, B. and Hammond-Kosack, M. 2016. Searching for novel targets to control wheat head blight disease—I-Protein identification,3D modeling and virtual screening. Advances in Microbiology. 6 (11), pp. 811-830.

Developing integrated crop knowledge networks to advance candidate gene discovery

A - Papers appearing in refereed journals
Hassani-Pak, K., Castellote, M., Esch, M., Hindle, M. M., Lysenko, A., Taubert, J. and Rawlings, C. J. 2016. Developing integrated crop knowledge networks to advance candidate gene discovery. Applied & Translational Genomics. 11 (December), pp. 18-26.

An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat

C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. An evolutionary conserved wall-associated kinase like protein controls gene-for gene resistance to Zymoseptoria tritici in wheat. Achieving durable resistance to wheat diseases and pests, Minneapolis, Bloomington, Minnesota, 2-3 November, 2016. pp. 22

Evolution of recessive resistance genes against the bymovirus disease of barley

C2 - Non-edited contributions to conferences
Yang, P., Habekuss, A., Hofinger, B. J., Kanyuka, K., Kilian, B., Graner, A., Ordon, F. and Stein, N. 2016. Evolution of recessive resistance genes against the bymovirus disease of barley.  Abstacts 12th International Barely Genetics Symposium, Minneapolis, Minnesota, USA, 26-30 June, 2016. pp. Poster 215

A detailed curation of the Zymoseptoria tritici IPO323 gene annotation

C2 - Non-edited contributions to conferences
King, R., Rudd, J. J. and Kanyuka, K. 2016. A detailed curation of the Zymoseptoria tritici IPO323 gene annotation. Abstracts 9th International Symposium on Septoria Diseases of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. P0927

Resurrecting a 750-year-old plant virus

C2 - Non-edited contributions to conferences
Bouton, C., Smith, O., Ruiz-Rivero, O., Allaby, R., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Resurrecting a 750-year-old plant virus. Abstracts Internation Advances in Plant Virology, Univerity of Greenwich, Greenwich, UK, 7-9 September, 2016.

A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley

C2 - Non-edited contributions to conferences
Ford, K., Gamble, L., Griffe, L., Berepiki, A., Epihov, D., Knogge, W., Newton, A., Hammond-Kosack, K. E., Kanyuka, K. and Arova, A. 2016. A genomics approach to identify effectors in Rhynchosporium commune essential for pathogenicity on barley. Abstracts 13th European Conferernce on Fungal Genetics , Paris France , 3-6 April, 2016. pp. CS2M39

Solanaceous species recognise a novel PAMP from Rhynchosporium commune

C2 - Non-edited contributions to conferences
Franco, B., Berepiki, A., Birch, P. R. J., Kanyuka, K. and Avrova, A. 2016. Solanaceous species recognise a novel PAMP from Rhynchosporium commune. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract No P7-170

The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein

C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W-S., Cambon, F., Rudd, J. J., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2016. The wheat Stb6 gene controlling a gene-for-gene resistance to Zymoseptoria tritici encodes a wall-associated kinase like protein. Abstracts IS-MPMI XVII Congress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number: C18-4, P15-434

Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum

C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. Wheat homologues of BAK1 contribute to basal resistance against Zymoseptoria tritici and Fusarium graminearum. IS-MPMI XVII Conress, Portland, Oregon, USA, 17-21 July, 2016. pp. Abstract Number P18-680

A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots

C1 - Edited contributions to conferences/learned societies
Avrova, A., Franco, B., Berepiki, A., Birch, P. and Kanyuka, K. 2016. A novel fungal PAMP identified in Rhynchosporium commune is recognised in dicots. Abstracts 9th International Symposium on Spetoria Disease of Cereals (ISSDSC), Paris, France, 7-9 April, 2016.

Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes

C1 - Edited contributions to conferences/learned societies
Urban, M., Irvine, A., Cuzick, A. and Hammond-Kosack, K. E. 2016. Using the phenotypic information in the pathogen-host interactions database (PHI-BASE) to explore Fusarium and Magnaporthe genomes, transcriptomes and proteomes. Proceedings 5th ISFHB - 2nd IWWB Symposium, 5-10, Florianopolis, Brasil.

First draft genome sequence of a UK strain (UK99) of Fusarium culmorum

A - Papers appearing in refereed journals
Urban, M., King, R., Andongabo, A. E., Maheswari, U., Pedro, H., Kersey, P. and Hammond-Kosack, K. E. 2016. First draft genome sequence of a UK strain (UK99) of Fusarium culmorum. Genome Announcements. 4 (5), pp. e00771-16.

The genome of the emerging barley pathogen Ramularia collo-cygni

A - Papers appearing in refereed journals
McGrann, G. R. D., Andongabo, A. E., Sjokvist, E., Trivedi, U., Dussart, F., Kaczmarek, M., Mackenzie, A., Fountaine, J. M., Taylor, J. M. G., Paterson, L. J., Gorniak, K., Burnett, F., Kanyuka, K., Hammond-Kosack, K. E., Rudd, J. J., Blaxter, M. and Havis, N. D. 2016. The genome of the emerging barley pathogen Ramularia collo-cygni. BMC Genomics. 17 (1), p. 584.

A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness

A - Papers appearing in refereed journals
Hen-Avivi, S., Savin, O., Racovita, R. C., Lee, W-S., Adamski, N. M., Malitsky, S., Almekias-Siegl, E., Levy, M., Vautrin, S., Berges, H., Friedlander, G., Kartvelishvily, E., Ben-Zvi, G., Alkan, N., Uauy, C., Kanyuka, K., Jetter, R., Distelfeld, A. and Aharoni, A. 2016. A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness. The Plant Cell. 28 (6), pp. 1440-1460.

A role for BAK1 in the Zymoseptoria tritici-wheat interaction

C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2016. A role for BAK1 in the Zymoseptoria tritici-wheat interaction. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease

A - Papers appearing in refereed journals
Bresso, E., Leroux, V., Urban, M., Hammond-Kosack, K. E., Maigret, B. and Martins, N. F. 2016. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneal synthase - a potential target to reduce Fusarium head blight disease. Journal Of Molecular Modeling. 22, p. 163.

Publishing FAIR data: an exemplar methodology utilizing PHI-base

A - Papers appearing in refereed journals
Rodriguez-Iglesias, A., Rodriguez-Gonzales, A., Irvine, A. G., Sesma, A., Urban, M., Hammond-Kosack, K. E. and Wilkinson, M. D. 2016. Publishing FAIR data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science. 7, p. 641.

Comparative transcriptomic analyses of Zymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles

A - Papers appearing in refereed journals
Palma-Guerrero, J., Torriani, S. F. F., Zala, M., Carter, D., Courbot, M., Rudd, J. J., Mcdonald, B. A. and Croll, D. 2016. Comparative transcriptomic analyses of Zymoseptoria tritici strains show complex lifestyle transitions and intraspecific variability in transcription profiles. Molecular Plant Pathology. 17 (6), pp. 845-859.

Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease

C2 - Non-edited contributions to conferences
Kanyuka, K., Saintenac, C., Lee, W-S., Cambon, F., King, R., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E. and Langin, T. 2016. Cloning of Stb6 - the first gene conferring race-specific resistance against the Septoria tritici blotch disease. Abstracts 9th International Symposium on Septoria Diseases of Cereals, Paris, 7-9 April 2016.

Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Kettles, G. J. and Kanyuka, K. 2016. Dissecting the molecular interactions between wheat and the fungal pathogen Zymoseptoria tritici. Frontiers in Plant Science. 7, p. 508.

Control of arable crop pathogens: climate change mitigation, impacts and adaptation

B - Book chapters etc edited externally
Fitt, B. D. L., Hughes, D. J. and Stotz, H. U. 2016. Control of arable crop pathogens: climate change mitigation, impacts and adaptation. in: Edwards, D. and Batley, J. (ed.) Plant genomics and climate change Springer, New York. pp. 49-66

Salicylic acid treatment and expression of an RNA-dependent RNA polymerase 1 transgene inhibit lethal symptoms and meristem invasion during tobacco mosaic virus infection in Nicotiana benthamiana

A - Papers appearing in refereed journals
Lee, W-S., Fu, S-F., Li, Z., Murphy, A. M., Dobson, E. A., Garland, L., Chaluvadi, S. R., Lewsey, M. G., Nelson, R. S. and Carr, J. P. 2016. Salicylic acid treatment and expression of an RNA-dependent RNA polymerase 1 transgene inhibit lethal symptoms and meristem invasion during tobacco mosaic virus infection in Nicotiana benthamiana. BMC Plant Biology. 16, p. 15.

The contribution of Aspergillus fumigatus stress responses to virulence and antifungal resistance

A - Papers appearing in refereed journals
Brown, N. A. and Goldman, G. H. 2016. The contribution of Aspergillus fumigatus stress responses to virulence and antifungal resistance. Journal of Microbiology. 54, pp. 243-253.

PhytoPath: an integrative resource for plant pathogen genomics

A - Papers appearing in refereed journals
Pedro, H., Maheswari, U., Urban, M., Irvine, A. G., Cuzick, A., Mcdowall, M. D., Staines, D. M., Kulesha, E., Hammond-Kosack, K. E. and Kersey, P. J. 2016. PhytoPath: an integrative resource for plant pathogen genomics. Nucleic Acids Research. 44 (D1), pp. D688-D693.

Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops

C1 - Edited contributions to conferences/learned societies
Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90