SAS-H: Soil Biology

Title	SAS-H: Soil Biology
Type	Research cluster

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Nutrient dynamics in the rhizosphere

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Miller, A. J. 2003. Nutrient dynamics in the rhizosphere.

A case study: the soil ecosystem

C2 - Non-edited contributions to conferences

Hirsch, P. R. 2003. A case study: the soil ecosystem. Abstracts Royal Society Discussion Meeting on GM Crops, Modern Agriculture and the Environment, London, 11 February 2003 .

The influence of the root-knot nematode Meloidogyne incognita , the nematicide aldicarb and the nematophagous fungus Pochonia chlamydosporia on heterotrophic bacteria in soil and the rhizosphere

A - Papers appearing in refereed journals

O'flaherty, S. M., Hirsch, P. R. and Kerry, B. R. 2003. The influence of the root-knot nematode Meloidogyne incognita , the nematicide aldicarb and the nematophagous fungus Pochonia chlamydosporia on heterotrophic bacteria in soil and the rhizosphere. European Journal of Soil Science. 54 (4), pp. 759-766. https://doi.org/10.1046/j.1365-2389.2003.00568.x

How do roots penetrate strong soil?

A - Papers appearing in refereed journals

Clark, L. J., Whalley, W. R. and Barraclough, P. B. 2003. How do roots penetrate strong soil? Plant and Soil. 255, pp. 93-104.

Geostatistical analysis of arsenic concentration in groundwater in Bangladesh using disjunctive kriging

A - Papers appearing in refereed journals

Gaus, I., Kinniburgh, D. G., Talbot, J. C. and Webster, R. 2003. Geostatistical analysis of arsenic concentration in groundwater in Bangladesh using disjunctive kriging. Environmental Geology. 44, pp. 939-948.

Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting

A - Papers appearing in refereed journals

Atkins, S. D., Clark, I. M., Sosnowska, D., Hirsch, P. R. and Kerry, B. R. 2003. Detection and quantification of Plectosphaerella cucumerina , a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Applied and Environmental Microbiology. 69, pp. 4788-4793.

Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat

A - Papers appearing in refereed journals

Theodoulou, F. L., Clark, I. M., He, X-L., Pallett, K. E., Cole, D. J. and Hallahan, D. L. 2003. Co-induction of glutathione-S-transferases and multidrug resistance associated protein by xenobiotics in wheat. Pest Management Science. 59 (2), pp. 202-214. https://doi.org/10.1002/ps.576

Let's re-write the scientific paper

G - Articles in popular magazines and other technical publications

Webster, R. 2003. Let's re-write the scientific paper. European Journal of Soil Science. 54, pp. 215-218.

Mapping infestations of potato cyst nematodes and the potential for spatially varying application of nematicides

A - Papers appearing in refereed journals

Evans, K., Webster, R., Barker, A. D. P., Halford, P. D., Russell, M. D., Stafford, J. and Griffin, S. 2003. Mapping infestations of potato cyst nematodes and the potential for spatially varying application of nematicides. Precision Agriculture. 4, pp. 149-162.

Cloning of and genetic variation in protease VCP1 from the nematophagous fungus Pochonia chlamydosporia

A - Papers appearing in refereed journals

Morton, C. O., Hirsch, P. R., Peberdy, J. P. and Kerry, B. R. 2003. Cloning of and genetic variation in protease VCP1 from the nematophagous fungus Pochonia chlamydosporia. Mycological Research. 107 (1), pp. 38-46. https://doi.org/10.1017/S0953756202007050

Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes

A - Papers appearing in refereed journals

Atkins, S. D., Hidalgo-Diaz, L., Clark, I. M., Morton, C. O., Montes De Oca, N., Gray, P. A. and Kerry, B. R. 2003. Approaches for monitoring the release of Pochonia chlamydosporia var. catenulata , a biocontrol agent of root-knot nematodes. Mycological Research. 107, pp. 206-212.

Development of a new management strategy for the control of root-knot nematodes (Meloidogyne spp) in organic vegetable production

A - Papers appearing in refereed journals

Atkins, S. D., Hidalgo-Diaz, L., Kalisz, H., Mauchline, T. H., Hirsch, P. R. and Kerry, B. R. 2003. Development of a new management strategy for the control of root-knot nematodes (Meloidogyne spp) in organic vegetable production. Pest Management Science. 59 (2), pp. 183-189. https://doi.org/10.1002/ps.603

PCR-based DNA fingerprinting indicates host-related genetic variation in the nematophagous fungus Pochonia chlamydosporia

A - Papers appearing in refereed journals

Morton, C. O., Mauchline, T. H., Kerry, B. R. and Hirsch, P. R. 2003. PCR-based DNA fingerprinting indicates host-related genetic variation in the nematophagous fungus Pochonia chlamydosporia. Mycological Research. 107, pp. 198-205.

Variance in Pochonia chlamydosporia and its importance in the regulation of nematode populations in the rhizosphere

C2 - Non-edited contributions to conferences

Kerry, B. R., Morton, C. O., Mauchline, T. H. and Hirsch, P. R. 2002. Variance in Pochonia chlamydosporia and its importance in the regulation of nematode populations in the rhizosphere. Abstracts Symposium on the Role of Genetics and Evolution in Biological Control, Montpellier, 14-16 October 2002 .

Isolates of the generalist parasite Pochonia chlamydosporia have specific interactions with their nematode hosts

C2 - Non-edited contributions to conferences

Kerry, B. R., Morton, C. O., Mauchline, T. H. and Hirsch, P. R. 2002. Isolates of the generalist parasite Pochonia chlamydosporia have specific interactions with their nematode hosts. Abstracts 4th International Congress of Nematology, Tenerife, 8-13 June 2002 .

Initial testing of potential fungal biological control agents for potato cyst nematodes

C1 - Edited contributions to conferences/learned societies

Atkins, S. D., Clark, I. M., Sosnowska, D. and Kerry, B. R. 2002. Initial testing of potential fungal biological control agents for potato cyst nematodes. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 79-84

Spatial and temporal modelling

B - Book chapters etc edited externally

Webster, R. 2002. Spatial and temporal modelling. in: Payne, R. W. (ed.) Guide to GenStat release 6.1. Part 2. Statistics VSN International, Hemel Hempstead. pp. 779-826

GenStat release 6.1 reference manual. Part 2. Directives

E - Books edited/written by staff member, alone/with others

Payne, R. W., Baird, D. B., Cherry, M., Gilmour, A. R., Harding, S. A., Lane, P. W., Morgan, G. W., Murray, D. A., Soutar, D. M., Thompson, R., Todd, A. D., Tunnicliffe Wilson, G., Webster, R. and Welham, S. J. 2002. GenStat release 6.1 reference manual. Part 2. Directives. Hemel Hempstead VSN International.

GenStat release 6.1 reference manual. Part 1. Summary

E - Books edited/written by staff member, alone/with others

Statistical and geostatistical analysis of the National Soil Inventory of England and Wales. Technical Report to the Department of Food and Rural Affairs

D1 - Technical reports: non-confidential

Oliver, M. A., Loveland, P. J., Frogbrook, Z. L., Webster, R. and McGrath, S. P. 2002. Statistical and geostatistical analysis of the National Soil Inventory of England and Wales. Technical Report to the Department of Food and Rural Affairs. Available on CD-ROM from the National Soil Resources Institute, Cranfield University, Silsoe, Bedford MK45 4DT.

Impact of GM bacterial inoculants on the soil microbial community

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2002. Impact of GM bacterial inoculants on the soil microbial community. Abstracts International Conference on GMOs - Ecological Dimensions, Reading, 9-11 September 2002 .

Release of transgenic bacterial inoculants in Europe

C2 - Non-edited contributions to conferences

Hirsch, P. R. 2002. Release of transgenic bacterial inoculants in Europe. Abstracts Symposium on the Impact of GMOs: Soil Microbiology and Nutrient Dynamics, Vienna, 3-6 November 2002 .

Fate of GM rhizobial inoculants: lessons from Europe and elsewhere

C1 - Edited contributions to conferences/learned societies

Hirsch, P. R. 2002. Fate of GM rhizobial inoculants: lessons from Europe and elsewhere. Proceedings 7th International Symposium on the Biosafety of GMOs, Beijing, 10-17 October 2002 . pp. 243-250

Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes

C2 - Non-edited contributions to conferences

Gilliam, L. M., Clark, I. M. and Hirsch, P. R. 2002. Genetic and functional diversity in the rhizosphere of oilseed rape, wheat and potatoes. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 . pp. 86

Reply to comment on "Modelling soil variation: past, present and future", by Phillipe Baveye

A - Papers appearing in refereed journals

Heuvelink, G. B. M. and Webster, R. 2002. Reply to comment on "Modelling soil variation: past, present and future", by Phillipe Baveye. Geoderma. 109, pp. 295-297.

Interactions in the root environment - an integrated approach. The Rothamsted Millennium Conference

E - Books edited/written by staff member, alone/with others

Powlson, D. S., Bateman, G. L., Davies, K. G., Gaunt, J. L. and Hirsch, P. R. Barlow, P. W. (ed.) 2002. Interactions in the root environment - an integrated approach. The Rothamsted Millennium Conference. Kluwer Academic Publishers, Dordrecht, Netherlands.

Changes in the population structure of beta-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice

A - Papers appearing in refereed journals

Mendum, T. A. and Hirsch, P. R. 2002. Changes in the population structure of beta-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice. Soil Biology and Biochemistry. 34, pp. 1479-1485.

The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow

A - Papers appearing in refereed journals

Clark, I. M., Mendum, T. A. and Hirsch, P. R. 2002. The influence of the symbiotic plasmid pRL1J1 on the distribution of GM rhizobia in soil and crop rhizospheres, and implications for gene flow. Antonie van Leeuwenhoek. 81, pp. 607-616.

Root penetration of strong soil in rainfed lowland rice: comparison of laboratory screens with field performance

A - Papers appearing in refereed journals

Clark, L. J., Cope, R. E., Whalley, W. R., Barraclough, P. B. and Wade, L. J. 2002. Root penetration of strong soil in rainfed lowland rice: comparison of laboratory screens with field performance. Field Crops Research. 76, pp. 189-198. https://doi.org/10.1016/S0378-4290(02)00039-4

Analysing repeated measurements in soil monitoring and experimentation

A - Papers appearing in refereed journals

Webster, R. and Payne, R. W. 2002. Analysing repeated measurements in soil monitoring and experimentation. European Journal of Soil Science. 53 (1), pp. 1-13. https://doi.org/10.1046/j.1365-2389.2002.00408.x

The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere

C2 - Non-edited contributions to conferences

Clark, I. M. and Hirsch, P. R. 2002. The role of the rhizobium symbiotic plasmid in survival in the soil and the rhizosphere. Abstracts BAGECO-7: 7th Symposium on Bacterial Genetics and Ecology, Bergen, 15-19 June 2002 .

The fate of genetically modified rhizobial inoculants in the field

C2 - Non-edited contributions to conferences

Hirsch, P. R. and Clark, I. M. 2002. The fate of genetically modified rhizobial inoculants in the field. Abstracts 8th New Phytologist Symposium, Helsinki, 10-14 June 2002 .

Quantification in soil and the rhizosphere of the nematophagous fungus Verticillium chlamydosporium by competitive PCR and comparison with selective plating

A - Papers appearing in refereed journals

Mauchline, T. H., Kerry, B. R. and Hirsch, P. R. 2002. Quantification in soil and the rhizosphere of the nematophagous fungus Verticillium chlamydosporium by competitive PCR and comparison with selective plating. Applied and Environmental Microbiology. 68, pp. 1846-1853.

Failure of the Mycobacterium bovis BCG vaccine: some species of environmental mycobacteria block multiplication of BCG and induction of protective immunity to tuberculosis

A - Papers appearing in refereed journals

Brandt, L., Feino Cunha, J., Weinreich O. A., Chilima, B., Hirsch, P. R., Appelberg, R. and Andersen, P. 2002. Failure of the Mycobacterium bovis BCG vaccine: some species of environmental mycobacteria block multiplication of BCG and induction of protective immunity to tuberculosis. Infection And Immunity. 70, pp. 672-678. https://doi.org/10.1128/iai.70.2.672-678.2002

Disjunctive kriging for agricultural management

C1 - Edited contributions to conferences/learned societies

Oliver, M. A. and Webster, R. 2001. Disjunctive kriging for agricultural management. Proceedings 3rd European Conference on Precision Agriculture, Montpellier, 18-20 June 2001. Vol. 1 . Agro Montpellier, Montpellier. pp. 67-72

Foreword to Proceedings of the Rothamsted Millennium Conference on Interactions in the Root Environment

G - Articles in popular magazines and other technical publications

Powlson, D. S., Bateman, G. L., Davies, K. G., Gaunt, J. L., Hirsch, P. R. and Barlow, P. W. 2001. Foreword to Proceedings of the Rothamsted Millennium Conference on Interactions in the Root Environment. Plant and Soil. 232, pp. 1-2.

Studies into the molecular ecology of the nematophagous fungus Verticillium chlamydosporium

F - Theses

Mauchline, T. H. 2001. Studies into the molecular ecology of the nematophagous fungus Verticillium chlamydosporium. F - Theses

Factorial kriging of a soil inventory

C1 - Edited contributions to conferences/learned societies

Webster, R., Oliver, M. A., Loveland, P. J., Frogbrook, Z. and McGrath, S. P. 2001. Factorial kriging of a soil inventory. Kleingeld, W. J. and Krige, D. G. (ed.) Geostatistics 2000, Cape Town. Vol. 2 . Geostatistical Association of South Africa, Cape Town. pp. 623-632

Changes in variance and correlation of soil properties with scale and location: analysis using an adapted maximal overlap discrete wavelet transform

A - Papers appearing in refereed journals

Lark, R. M. and Webster, R. 2001. Changes in variance and correlation of soil properties with scale and location: analysis using an adapted maximal overlap discrete wavelet transform. European Journal of Soil Science. 52 (4), pp. 547-562. https://doi.org/10.1046/j.1365-2389.2001.00420.x

The role of soil microorganisms in soil organic matter conservation in the tropics

A - Papers appearing in refereed journals

Powlson, D. S., Hirsch, P. R. and Brookes, P. C. 2001. The role of soil microorganisms in soil organic matter conservation in the tropics. Nutrient Cycling in Agroecosystems. 61 (1), pp. 41-51. https://doi.org/10.1023/A:1013338028454