SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture.
A - Papers appearing in refereed journals
Bacq-Labreuila, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., McAuliffe, C., Zhang, X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002
Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
A - Papers appearing in refereed journals
Taketani, R. G., Moitinho, M. A., Mauchline, T. H. and Melo, I. S. 2018. Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances. PeerJ. 6, p. e5710. https://doi.org/10.7717/peerj.5710
Shrinkage characteristics of lime concretion black soil as affected by biochar amendment
A - Papers appearing in refereed journals
Wei, C., Gao, W., Whalley, W. R. and Li, B. 2018. Shrinkage characteristics of lime concretion black soil as affected by biochar amendment. Pedosphere. 28 (5), pp. 713-725. https://doi.org/10.1016/S1002-0160(18)60041-4
A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application
A - Papers appearing in refereed journals
Wang, F., Zhang, X., Shen, X. and Sun, J, 2018. A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application . Journal of Hydrology. 564 (564), pp. 246-255. https://doi.org/10.1016/j.jhydrol.2018.06.083
Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil
A - Papers appearing in refereed journals
Zhang, X., Wang, D. and Liu, Y. 2018. Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil. Geoderma. 320 (15), pp. 126-135. https://doi.org/10.1016/j.geoderma.2018.01.021
Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak
A - Papers appearing in refereed journals
Feng, S., Hossain, L., Crawford, J. W. and Bossomaier, T. 2018. Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak. Disaster Medicine and Public Health Preparedness. 12 (1), pp. 26-37. https://doi.org/10.1017/dmp.2017.29
Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive
E - Books edited/written by staff member, alone/with others
Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.
The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management
A - Papers appearing in refereed journals
Fu, Q., Clark, I. M., Zhu, J., Hu, H. Q. and Hirsch, P. R. 2018. The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management. Biology And Fertility Of Soils. 54 (1), pp. 163-172. https://doi.org/10.1007/s00374-017-1249-2
Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Clark, I. M. and Hirsch, P. R. 2018. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil. Letters in Applied Microbiology. 66 (1), pp. 14-18. https://doi.org/10.1111/lam.12821
Analysis of variance in soil research : let the analysis fit the action
A - Papers appearing in refereed journals
Webster, R. and Lark, R. M. 2018. Analysis of variance in soil research : let the analysis fit the action. European Journal of Soil Science. 69 (1), pp. 216-139. https://doi.org/10.1111/ejss.12511
Soil microorganisms: role in soil health
B - Book chapters etc edited externally
Hirsch, P. R. 2018. Soil microorganisms: role in soil health. in: Reicosky, D. (ed.) Managing Soil Health for Sustainable Agriculture. Volume 1: Fundamentals Cambridge, UK Burleigh Dodds. pp. 169-196
Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T‐RFLP method
A - Papers appearing in refereed journals
Mohammad, B. M., Terence, L. M., Blaud, A., Roshada, H., Wizilla, J. A. J. and Siti, A. M. N. 2018. Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T‐RFLP method. Aquaculture Research. 49, pp. 3350-3361. https://doi.org/10.1111/are.13799
Land use driven change in soil pH affects microbial carbon cycling processes
A - Papers appearing in refereed journals
Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M, Masson, K.E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G. and Griffiths, R.I. 2018. Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications. 9 (3591). https://doi.org/10.1038/s41467-018-05980-1
Water flow across the interface of contrasting materials: Pressure discontinuity and its implications
A - Papers appearing in refereed journals
Li, Z., Wang, D., Zhang, X. and Crawford, J. W. 2018. Water flow across the interface of contrasting materials: Pressure discontinuity and its implications . Journal of Hydrology. 566, pp. 435-440. https://doi.org/10.1016/j.jhydrol.2018.09.029
A pore-scale model for simulating water flow in unsaturated soil
A - Papers appearing in refereed journals
Hu, W., Guofeng, L. and Zhang, X. 2018. A pore-scale model for simulating water flow in unsaturated soil . Microfluidics and Nanofluidics. 22 (7), p. 22:71. https://doi.org/10.1007/s10404-018-2090-0
Plant roots redesign the rhizosphere to alter the three-dimensional physical architecture and water dynamics
A - Papers appearing in refereed journals
Rabbi, S. M. F., Tighe, M. K., Flavel, R. J., Kaiser, B. N., Guppy, C. N., Zhang, X. and Young, I. M. 2018. Plant roots redesign the rhizosphere to alter the three-dimensional physical architecture and water dynamics . New Phytologist. 219 (2), pp. 542-550. https://doi.org/10.1111/nph.15213
Improved Interpretation of Mercury Intrusion and Soil Water Retention Percolation Characteristics by Inverse Modelling and Void Cluster Analysis
A - Papers appearing in refereed journals
Matthews, G. P., Levy, C. L., Laudone, G. M., Jones, K. L., Ridgway, C. J., Hallin, I. L., Gazze, S. A., Francis, L., Whalley, W. R., Schoelkopf, J. and Gane, P. A. C. 2018. Improved Interpretation of Mercury Intrusion and Soil Water Retention Percolation Characteristics by Inverse Modelling and Void Cluster Analysis. Transport In Porous Media. https://doi.org/10.1007/s11242-018-1087-1
Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities
A - Papers appearing in refereed journals
George, T. S., Giles, C. D., Menezes-Blackburn, D., Condron, L. M., Gama-Rodrigues, A. C., Jaisi, D., Lang, F., Neal, A. L., Stutter, M. I., Almeida, D. S., Bol, R., Cabugoa, K. G., Celi, L., Cotner, J. B., Feng, G., Goll, D. S., Hallama, M., Krueger, J., Plassard, C., Rosling, A., Darch, T., Fraser, T., Giesler, R., Richardson, A. E., Tamburini, F., Shand, C. A., Lumsdon, D. G., Zhang, H., Blackwell, M. S. A., Wearing, C., Mezeli, M. M., Almas, A. R., Audette, Y., Bertrand, I., Beyhaut, E., Boitt, G., Bradshaw, N., Brearley, C. A., Bruulsema, T. W., Ciais, P., Cozzolino, V., Duran, P. C., Mora, M. L., De Menezes, A. B., Dodd, R. J., Dunfield, K., Engl, C., Frazao, P. C., Garland, G., Gonzalez Jimenez, J. L., Graca, J., Granger, S. J., Harrison, A. F., Heuck, C., Hou, E. Q., Johnes, P. J., Kaiser, K., Kjaer, H. A., Klumpp, E., Lamb, A. L., Macintosh, K .A., Mackay, E. B., McGrath, J., McIntryre, C., McLaren, T., Meszaros, E., Missong, A., Mooshammer, M., Negron, C. P., Nelson, L. A., Pfahler, V., Poblete-Grant, P., Randall, M., Seguel, A., Seth, K., Smith , A. C., Smits, M. M., Sobaro, J. A., Spohn, M., Tawaraya, K., Tibbett, M., Voroney, P., Wallander, H., Wang, L., Wasaki, J. and Haygarth, P. M. 2018. Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427 (1-2), pp. 191-208. https://doi.org/10.1007/s11104-017-3391-x
Soil Water Retention: Uni-Modal Models of Pore-Size Distribution Neglect Impacts of Soil Management
A - Papers appearing in refereed journals
Jensen, J. L., Schjonning, P., Watts, C. W., Christensen, B. T. and Munkholm, L. J. 2018. Soil Water Retention: Uni-Modal Models of Pore-Size Distribution Neglect Impacts of Soil Management. Soil Science Society of America Journal. 83 (1), pp. 18-26. https://doi.org/10.2136/sssaj2018.06.0238
Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities
A - Papers appearing in refereed journals
Nessner-Kavamura-Noguchi, V., Hayat, R., Clark, I. M., Rossmann, M., Mendes, R., Hirsch, P. R. and Mauchline, T. H. 2018. Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. Frontiers in Microbiology. 9, p. 1074. https://doi.org/10.3389/fmicb.2018.01074
Spatial Analysis of Digital Imagery of Weeds in a Maize Crop
A - Papers appearing in refereed journals
San-Martin-Hernandez, C., Milne, A. E., Webster, R., Storkey, J., Andujar, D., Fernandez-Quintanilla, C. and Dorado, J. 2018. Spatial Analysis of Digital Imagery of Weeds in a Maize Crop. ISPRS International Journal of Geo-Information. 7 (2), pp. 61-81. https://doi.org/10.3390/ijgi7020061
Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere
A - Papers appearing in refereed journals
Liu, Y., Neal, A. L., Cui, E., Zhang, X., Li, Z., Xiao, Y., Du, Z., Gao, F., Fan, X. and Hu, C. 2018. Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere . Science of the Total Environment. https://doi.org/10.1016/j.scitotenv.2018.08.101
Defining the habitat niche of Alopecurus myosuroides at the field scale
A - Papers appearing in refereed journals
Metcalfe, H., Milne, A. E., Webster, R., Lark, R. M., Murdoch, A. J., Kanelo, L. and Storkey, J. 2018. Defining the habitat niche of Alopecurus myosuroides at the field scale. Weed Research. 58 (3), pp. 165-176. https://doi.org/10.1111/wre.12300
Converting loss-on-ignition to organic carbon content in arable topsoil: Pitfalls and proposed procedure
A - Papers appearing in refereed journals
Jensen, J. L., Christensen, B. T., Schjonning, P., Watts, C. W. and Munkholm, L. J. 2018. Converting loss-on-ignition to organic carbon content in arable topsoil: Pitfalls and proposed procedure . European Journal of Soil Science. https://doi.org/10.1111/ejss.12558
Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution
A - Papers appearing in refereed journals
Cui, E-P., Gao, F., Liu, Y., Fan, X-Y., Li, Z-Y., Du, Z-J., Hu, C. and Neal, A. L. 2018. Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution. Environmental Pollution. 240, pp. 475-484. https://doi.org/10.1016/j.envpol.2018.04.143
Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system
A - Papers appearing in refereed journals
De Sosa, L. L., Glanville, C. C., Marshall, M. R., Williams, A. P., Abadie, M., Clark, I. M., Blaud, A. and Jones, D. L. 2018. Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system. Soil Biology and Biochemistry. 120, pp. 153-164. https://doi.org/10.1016/j.soilbio.2018.02.004
Rubber plantation ageing controls soil biodiversity after land conversion from cassava
A - Papers appearing in refereed journals
Peerawat, M., Blaud, A., Trap, J., Chevallier, T., Alonso, P., Gay, F., Thaler, P., Spor, A., Sebag, D., Choosai, C., Suvannang, N., Sajjaphan, K. and Brauman, A. 2018. Rubber plantation ageing controls soil biodiversity after land conversion from cassava. Agriculture, Ecosystems & Environment. 257, pp. 92-102. https://doi.org/10.1016/j.agee.2018.01.034
Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture
A - Papers appearing in refereed journals
Baco-Labreuil, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., Mcauliffe, C., Zhang, X. X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002
Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance
A - Papers appearing in refereed journals
Neal, A. L., Blackwell, M. S. A., Akkari, E., Clark, I. M., Hirsch, P. R. and Guyomar, C. 2018. Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. Plant and Soil. 427, pp. 175-189. https://doi.org/10.1007/s11104-017-3301-2
The effect of microbial activity on soil water diffusivity
A - Papers appearing in refereed journals
Choudhury, B. U., Ferraris, S., Ashton, R. W., Powlson, D. S. and Whalley, W. R. 2018. The effect of microbial activity on soil water diffusivity. European Journal of Soil Science. 69 (3), pp. 407-413. https://doi.org/10.1111/ejss.12535
Soil organic matter widens the range of water contents for tillage
A - Papers appearing in refereed journals
Obour, P. B., Jensen, J. L., Lamande, M., Watts, C. W. and Munkholm, L. J. 2018. Soil organic matter widens the range of water contents for tillage. Soil & Tillage Research. 182 (October), pp. 57-65. https://doi.org/10.1016/j.still.2018.05.001
A comparison of GPR early-time signal approaches for mapping changes in shallow soil water content
A - Papers appearing in refereed journals
Algeo, J., Slater, L., Binley, A., Van Dam, R. L. and Watts, C. W. 2018. A comparison of GPR early-time signal approaches for mapping changes in shallow soil water content. Vadose Zone Journal. 17 (1), pp. 1-11. https://doi.org/10.2136/vzj2018.01.0001
A novel dielectric tensiometer enabling precision PID-based irrigation control of polytunnel-grown strawberries in coir
A - Papers appearing in refereed journals
Goodchild, M. S., Jenkins, M. D., Whalley, W. R. and Watts, C. W. 2018. A novel dielectric tensiometer enabling precision PID-based irrigation control of polytunnel-grown strawberries in coir. Biosystems Engineering. 165 (January), pp. 70-76. https://doi.org/10.1016/j.biosystemseng.2017.10.018
Woburn Experimental Farm Soil and Field Maps
D1 - Technical reports: non-confidential
Watts, C. W., Glendining, M. J. and Castells-Brooke, N. I. D. 2017. Woburn Experimental Farm Soil and Field Maps. https://doi.org/10.23637/ws-soil-maps-01
Improvement of soil structure and crop yield by adding organic matter to soil (AHDB Project Report No.576)
D1 - Technical reports: non-confidential
Whitmore, A. P., Watts, C. W., Stroud, J. L., Sizmur, T., Ebrahim, S. M., Pawlett, M., Harris, J., Ritz, K., Wallace, P., White, E., Stobart, R., McKenzie, B. and Thallon, G. 2017. Improvement of soil structure and crop yield by adding organic matter to soil (AHDB Project Report No.576). Stoneleigh Agriculture and Horticulture Development Board.
Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition
B - Book chapters etc edited externally
Blaud, A., Menon, M., van der Zaan, B., Lair, G. J. and Banwart, S. A. 2017. Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition. in: Advances in Agronomy Elsevier.
Is there sufficient Ensifer and Rhizobium species diversity in UK farmland soils to support red clover (Trifolium pratense), white clover (T. repens), lucerne (Medicago sativa) and black medic (M. lupulina)?
A - Papers appearing in refereed journals
Roberts, R., Jackson, R. W., Mauchline, T. H., Hirsch, P. R., Shaw, L. J., Doring, T. F. and Jones, H. E. 2017. Is there sufficient Ensifer and Rhizobium species diversity in UK farmland soils to support red clover (Trifolium pratense), white clover (T. repens), lucerne (Medicago sativa) and black medic (M. lupulina)? Applied Soil Ecology. 120, pp. 35-43. https://doi.org/10.1016/j.apsoil.2017.06.030
Pore-scale simulation of gas diffusion in unsaturated soil aggregates: Accuracy of the dusty-gas model and the impact of saturation
A - Papers appearing in refereed journals
Li, Z. Y., Zhang, X. and Liu, Yuan 2017. Pore-scale simulation of gas diffusion in unsaturated soil aggregates: Accuracy of the dusty-gas model and the impact of saturation. Geoderma. 303, pp. 196-203. https://doi.org/10.1016/j.geoderma.2017.05.008
Changes in soil redox potential in response to flood irrigation with waste water in central Mexico
A - Papers appearing in refereed journals
Gozalez-Mendez, B., Webster, R., Fiedler, S. and Siebe, C. 2017. Changes in soil redox potential in response to flood irrigation with waste water in central Mexico. European Journal of Soil Science. 68 (6), pp. 886-896. https://doi.org/10.1111/ejss.12484
Effect of soil saturation on denitrification in a grassland soil
A - Papers appearing in refereed journals
Cardenas, L. M., Bol, R., Lewicka-Szczebak, D., Gregory, A. S., Matthews, G. P., Whalley, W. R., Misselbrook, T. H., Scholefield, D. and Well, R. 2017. Effect of soil saturation on denitrification in a grassland soil. Biogeosciences. 14 (20), pp. 4691-4710. https://doi.org/10.5194/bg-14-4691-2017