SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Multiple abiotic stress, nitrate availability and the growth of wheat
A - Papers appearing in refereed journals
Ge, Y., Hawkesford, M. J., Rosolem, C. A., Mooney, S. J., Ashton, R. W., Evans, J. and Whalley, W. R. 2019. Multiple abiotic stress, nitrate availability and the growth of wheat . Soil & Tillage Research. 191 (August), pp. 171-184. https://doi.org/10.1016/j.still.2019.04.005
Landmark Papers: No. 8 Burgess, T.M. & Webster, R. 1980. Optimal interpolation and isarithmic mapping of soil properties. I. The semi-variogram and punctual kriging. Journal of Soil Science, 31, 315–331 Reflections by R. Webster
A - Papers appearing in refereed journals
Webster, R. 2019. Landmark Papers: No. 8 Burgess, T.M. & Webster, R. 1980. Optimal interpolation and isarithmic mapping of soil properties. I. The semi-variogram and punctual kriging. Journal of Soil Science, 31, 315–331 Reflections by R. Webster. European Journal of Soil Science. 2019 (70), pp. 2-6. https://doi.org/10.1111/ejss.12750
Optimal interpolation and isarithmic mapping of soil properties .1. The semi-variogram and punctual kriging
A - Papers appearing in refereed journals
Burgess, T. M. and Webster, R. 2019. Optimal interpolation and isarithmic mapping of soil properties .1. The semi-variogram and punctual kriging. European Journal of Soil Science. 70 (1), pp. 11-19. https://doi.org/10.1111/ejss.12784
The role of plant species and soil condition in the structural development of the rhizosphere
A - Papers appearing in refereed journals
Helliwell, J. R., Sturrock, C. J., Miller, A. J., Whalley, W. R. and Mooney, S. J. 2019. The role of plant species and soil condition in the structural development of the rhizosphere. Plant, Cell and Environment. 42 (6), pp. 1974-1986. https://doi.org/10.1111/pce.13529
Soil water contents for tillage : a comparison of approaches and consequences for the number of workable days
A - Papers appearing in refereed journals
Obour, P. B., Keller, T., Jensen, J. L., Edwards, G., Lamande, M., Watts, C. W., Sorensen, C. G and Munkholm, L. J. 2019. Soil water contents for tillage : a comparison of approaches and consequences for the number of workable days . Soil & Tillage Research. 195, p. 104384. https://doi.org/10.1016/j.still.2019.104384
Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture
A - Papers appearing in refereed journals
Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture. Plant and Soil. 441 (1-2), p. 543–554. https://doi.org/10.1007/s11104-019-04144-4
A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution
A - Papers appearing in refereed journals
Chen, S., Liang, Z., Webster, R., Zhang, G., Zhou, Y., Teng, H., Hi, B., Arrouays, D. and Shi, Z. 2019. A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution. Science of the Total Environment. 655, pp. 273-283. https://doi.org/10.1016/j.scitotenv.2018.11.230
Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype
A - Papers appearing in refereed journals
Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports. 9 (7473). https://doi.org/10.1038/s41598-019-43937-6
Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere
A - Papers appearing in refereed journals
Lui, Y., Neal, A. L., Zhang, X., Cui, E., Gao, F., Fan, X., Hu, C. and Li, Z. 2019. Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere. Biology And Fertility Of Soils. pp. 1-17. https://doi.org/10.1007/s00374-019-01361-y
Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil
A - Papers appearing in refereed journals
Neal, A. L. and Glendining, M. L. 2019. Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil. Soil Biology and Biochemistry. 139 (December), p. 107613. https://doi.org/10.1016/j.soilbio.2019.107613
Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation
A - Papers appearing in refereed journals
Cui, E., Fan, X., Li, Z., Liu, Y., Neal, A. L., Hu, C. and Gao, F. 2019. Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation. Applied Soil Ecology. 142, pp. 99-109. https://doi.org/10.1016/j.apsoil.2019.04.026
The relationships between seedling root screens, root growth in the field and grain yield for wheat
A - Papers appearing in refereed journals
Bai, C., Ge, Y., Ashton, R. W., Evans, J., Milne, A. E., Hawkesford, M. J., Whalley, W. R., Parry, M. A. J., Melichar, J., Feuerhelm, D., Bansept, P. and Bartsch, M. 2019. The relationships between seedling root screens, root growth in the field and grain yield for wheat . Plant and Soil. https://doi.org/10.1007/s11104-019-04088-9
Baseline map of soil organic carbon in Tibet and its uncertainty in the 1980s
A - Papers appearing in refereed journals
Zhou, Y., Webster, R., Viscara Rossel, R. A., Shi, Z. and Chen, S. 2019. Baseline map of soil organic carbon in Tibet and its uncertainty in the 1980s. Geoderma. 334, pp. 123-133. https://doi.org/10.1016/j.geoderma.2018.07.037
Relating soil C and organic matter fractions to structural stability
A - Papers appearing in refereed journals
Jensen, J. L., Schjonning, P., Watts, C. W., Christensen, B. T., Peltre, C. and Munkholm, L. 2019. Relating soil C and organic matter fractions to structural stability. Geoderma. 337 (1 March), pp. 834-843. https://doi.org/10.1016/j.geoderma.2018.10.034
Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture.
A - Papers appearing in refereed journals
Bacq-Labreuila, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., McAuliffe, C., Zhang, X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002
Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
A - Papers appearing in refereed journals
Taketani, R. G., Moitinho, M. A., Mauchline, T. H. and Melo, I. S. 2018. Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances. PeerJ. 6, p. e5710. https://doi.org/10.7717/peerj.5710
Shrinkage characteristics of lime concretion black soil as affected by biochar amendment
A - Papers appearing in refereed journals
Wei, C., Gao, W., Whalley, W. R. and Li, B. 2018. Shrinkage characteristics of lime concretion black soil as affected by biochar amendment. Pedosphere. 28 (5), pp. 713-725. https://doi.org/10.1016/S1002-0160(18)60041-4
A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application
A - Papers appearing in refereed journals
Wang, F., Zhang, X., Shen, X. and Sun, J, 2018. A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application . Journal of Hydrology. 564 (564), pp. 246-255. https://doi.org/10.1016/j.jhydrol.2018.06.083
Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil
A - Papers appearing in refereed journals
Zhang, X., Wang, D. and Liu, Y. 2018. Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil. Geoderma. 320 (15), pp. 126-135. https://doi.org/10.1016/j.geoderma.2018.01.021
Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak
A - Papers appearing in refereed journals
Feng, S., Hossain, L., Crawford, J. W. and Bossomaier, T. 2018. Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak. Disaster Medicine and Public Health Preparedness. 12 (1), pp. 26-37. https://doi.org/10.1017/dmp.2017.29
Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive
E - Books edited/written by staff member, alone/with others
Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.
The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management
A - Papers appearing in refereed journals
Fu, Q., Clark, I. M., Zhu, J., Hu, H. Q. and Hirsch, P. R. 2018. The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management. Biology And Fertility Of Soils. 54 (1), pp. 163-172. https://doi.org/10.1007/s00374-017-1249-2
Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Clark, I. M. and Hirsch, P. R. 2018. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil. Letters in Applied Microbiology. 66 (1), pp. 14-18. https://doi.org/10.1111/lam.12821
Analysis of variance in soil research : let the analysis fit the action
A - Papers appearing in refereed journals
Webster, R. and Lark, R. M. 2018. Analysis of variance in soil research : let the analysis fit the action. European Journal of Soil Science. 69 (1), pp. 216-139. https://doi.org/10.1111/ejss.12511
Soil microorganisms: role in soil health
B - Book chapters etc edited externally
Hirsch, P. R. 2018. Soil microorganisms: role in soil health. in: Reicosky, D. (ed.) Managing Soil Health for Sustainable Agriculture. Volume 1: Fundamentals Cambridge, UK Burleigh Dodds. pp. 169-196
Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T‐RFLP method
A - Papers appearing in refereed journals
Mohammad, B. M., Terence, L. M., Blaud, A., Roshada, H., Wizilla, J. A. J. and Siti, A. M. N. 2018. Analysing the effect of dietary prebiotics and probiotics on gut bacterial richness and diversity of Asian snakehead fingerlings using T‐RFLP method. Aquaculture Research. 49, pp. 3350-3361. https://doi.org/10.1111/are.13799
Land use driven change in soil pH affects microbial carbon cycling processes
A - Papers appearing in refereed journals
Malik, A.A., Puissant, J., Buckeridge, K.M., Goodall, T., Jehmlich, N., Chowdhury, S., Gweon, H.S., Peyton, J.M, Masson, K.E., van Agtmaal, M., Blaud, A., Clark, I. M., Whitaker, J., Pywell, R.F., Ostle, N., Gleixner, G. and Griffiths, R.I. 2018. Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications. 9 (3591). https://doi.org/10.1038/s41467-018-05980-1
Water flow across the interface of contrasting materials: Pressure discontinuity and its implications
A - Papers appearing in refereed journals
Li, Z., Wang, D., Zhang, X. and Crawford, J. W. 2018. Water flow across the interface of contrasting materials: Pressure discontinuity and its implications . Journal of Hydrology. 566, pp. 435-440. https://doi.org/10.1016/j.jhydrol.2018.09.029
A pore-scale model for simulating water flow in unsaturated soil
A - Papers appearing in refereed journals
Hu, W., Guofeng, L. and Zhang, X. 2018. A pore-scale model for simulating water flow in unsaturated soil . Microfluidics and Nanofluidics. 22 (7), p. 22:71. https://doi.org/10.1007/s10404-018-2090-0
Plant roots redesign the rhizosphere to alter the three-dimensional physical architecture and water dynamics
A - Papers appearing in refereed journals
Rabbi, S. M. F., Tighe, M. K., Flavel, R. J., Kaiser, B. N., Guppy, C. N., Zhang, X. and Young, I. M. 2018. Plant roots redesign the rhizosphere to alter the three-dimensional physical architecture and water dynamics . New Phytologist. 219 (2), pp. 542-550. https://doi.org/10.1111/nph.15213
Improved Interpretation of Mercury Intrusion and Soil Water Retention Percolation Characteristics by Inverse Modelling and Void Cluster Analysis
A - Papers appearing in refereed journals
Matthews, G. P., Levy, C. L., Laudone, G. M., Jones, K. L., Ridgway, C. J., Hallin, I. L., Gazze, S. A., Francis, L., Whalley, W. R., Schoelkopf, J. and Gane, P. A. C. 2018. Improved Interpretation of Mercury Intrusion and Soil Water Retention Percolation Characteristics by Inverse Modelling and Void Cluster Analysis. Transport In Porous Media. https://doi.org/10.1007/s11242-018-1087-1
Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities
A - Papers appearing in refereed journals
George, T. S., Giles, C. D., Menezes-Blackburn, D., Condron, L. M., Gama-Rodrigues, A. C., Jaisi, D., Lang, F., Neal, A. L., Stutter, M. I., Almeida, D. S., Bol, R., Cabugoa, K. G., Celi, L., Cotner, J. B., Feng, G., Goll, D. S., Hallama, M., Krueger, J., Plassard, C., Rosling, A., Darch, T., Fraser, T., Giesler, R., Richardson, A. E., Tamburini, F., Shand, C. A., Lumsdon, D. G., Zhang, H., Blackwell, M. S. A., Wearing, C., Mezeli, M. M., Almas, A. R., Audette, Y., Bertrand, I., Beyhaut, E., Boitt, G., Bradshaw, N., Brearley, C. A., Bruulsema, T. W., Ciais, P., Cozzolino, V., Duran, P. C., Mora, M. L., De Menezes, A. B., Dodd, R. J., Dunfield, K., Engl, C., Frazao, P. C., Garland, G., Gonzalez Jimenez, J. L., Graca, J., Granger, S. J., Harrison, A. F., Heuck, C., Hou, E. Q., Johnes, P. J., Kaiser, K., Kjaer, H. A., Klumpp, E., Lamb, A. L., Macintosh, K .A., Mackay, E. B., McGrath, J., McIntryre, C., McLaren, T., Meszaros, E., Missong, A., Mooshammer, M., Negron, C. P., Nelson, L. A., Pfahler, V., Poblete-Grant, P., Randall, M., Seguel, A., Seth, K., Smith , A. C., Smits, M. M., Sobaro, J. A., Spohn, M., Tawaraya, K., Tibbett, M., Voroney, P., Wallander, H., Wang, L., Wasaki, J. and Haygarth, P. M. 2018. Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427 (1-2), pp. 191-208. https://doi.org/10.1007/s11104-017-3391-x
Soil Water Retention: Uni-Modal Models of Pore-Size Distribution Neglect Impacts of Soil Management
A - Papers appearing in refereed journals
Jensen, J. L., Schjonning, P., Watts, C. W., Christensen, B. T. and Munkholm, L. J. 2018. Soil Water Retention: Uni-Modal Models of Pore-Size Distribution Neglect Impacts of Soil Management. Soil Science Society of America Journal. 83 (1), pp. 18-26. https://doi.org/10.2136/sssaj2018.06.0238
Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities
A - Papers appearing in refereed journals
Nessner-Kavamura-Noguchi, V., Hayat, R., Clark, I. M., Rossmann, M., Mendes, R., Hirsch, P. R. and Mauchline, T. H. 2018. Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities. Frontiers in Microbiology. 9, p. 1074. https://doi.org/10.3389/fmicb.2018.01074
Spatial Analysis of Digital Imagery of Weeds in a Maize Crop
A - Papers appearing in refereed journals
San-Martin-Hernandez, C., Milne, A. E., Webster, R., Storkey, J., Andujar, D., Fernandez-Quintanilla, C. and Dorado, J. 2018. Spatial Analysis of Digital Imagery of Weeds in a Maize Crop. ISPRS International Journal of Geo-Information. 7 (2), pp. 61-81. https://doi.org/10.3390/ijgi7020061
Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere
A - Papers appearing in refereed journals
Liu, Y., Neal, A. L., Cui, E., Zhang, X., Li, Z., Xiao, Y., Du, Z., Gao, F., Fan, X. and Hu, C. 2018. Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere . Science of the Total Environment. https://doi.org/10.1016/j.scitotenv.2018.08.101
Defining the habitat niche of Alopecurus myosuroides at the field scale
A - Papers appearing in refereed journals
Metcalfe, H., Milne, A. E., Webster, R., Lark, R. M., Murdoch, A. J., Kanelo, L. and Storkey, J. 2018. Defining the habitat niche of Alopecurus myosuroides at the field scale. Weed Research. 58 (3), pp. 165-176. https://doi.org/10.1111/wre.12300
Converting loss-on-ignition to organic carbon content in arable topsoil: Pitfalls and proposed procedure
A - Papers appearing in refereed journals
Jensen, J. L., Christensen, B. T., Schjonning, P., Watts, C. W. and Munkholm, L. J. 2018. Converting loss-on-ignition to organic carbon content in arable topsoil: Pitfalls and proposed procedure . European Journal of Soil Science. https://doi.org/10.1111/ejss.12558
Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution
A - Papers appearing in refereed journals
Cui, E-P., Gao, F., Liu, Y., Fan, X-Y., Li, Z-Y., Du, Z-J., Hu, C. and Neal, A. L. 2018. Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution. Environmental Pollution. 240, pp. 475-484. https://doi.org/10.1016/j.envpol.2018.04.143
Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system
A - Papers appearing in refereed journals
De Sosa, L. L., Glanville, C. C., Marshall, M. R., Williams, A. P., Abadie, M., Clark, I. M., Blaud, A. and Jones, D. L. 2018. Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system. Soil Biology and Biochemistry. 120, pp. 153-164. https://doi.org/10.1016/j.soilbio.2018.02.004