SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Effects of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on abundance and activity of ammonia oxidizers in soil
A - Papers appearing in refereed journals
Florio, A., Clark, I., Hirsch, P. R., Jhurreea, D. and Benedetti, A. 2014. Effects of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on abundance and activity of ammonia oxidizers in soil. Biology And Fertility Of Soils. 50 (5), pp. 795-807. https://doi.org/10.1007/s00374-014-0897-8
The founding charter of the Genomic Observatories Network
A - Papers appearing in refereed journals
Davies, N., Field, D., Amaral-Zettler, L., Clark, M. S., Deck, J., Drummond, A., Faith, D. P., Geller, J., Gilbert, J., Glockner, F. O., Hirsch, P. R., Leong, J-A., Meyer, C., Obst, M., Planes, S., Scholin, C., Vogler, A. P., Gates, R. D., Toonen, R., Berteaux-Lecellier, V., Barbier, M., Barker, K., Bertilsson, S., Bicak, M., Bietz, M. J., Bobe, J., Bodrossy, L., Borja, A., Coddington, J., Fuhrman, J., Gerdts, G., Gillespie, R., Goodwin, K., Hanson, P. C., Hero, J-M., Hoekman, D., Jansson, J., Jeanthon, C., Kao, R., Klindworth, A., Knight, R., Kottmann, R., Koo, M. S., Kotoulas, G., Lowe, Andrew J., Marteinsson, V. T., Meyer, F., Morrison, N., Myrold, D. D., Pafilis, E., Parker, S., Parnell, J. J., Polymenakou, P. N., Ratnasingham, S., Roderick, G. K., Rodriguez-Ezpeleta, N., Schonrogge, K., Simon, N., Valette-Silver, N. J., Springer, Y. P., Stone, G. N., Stones-Havas, S., Sansone, S-A., Thibault, K. M., Wecker, P., Wichels, A., Wooley, J. C., Yahara, T. and Zingone, A. 2014. The founding charter of the Genomic Observatories Network. GigaScience. 3 (1), pp. 1-5. https://doi.org/10.1186/2047-217X-3-2
Understanding the scale-dependence of the relations between soil conditions and weed density and the implications for precision management of weeds
A - Papers appearing in refereed journals
Metcalfe, H., Milne, A. E., Murdoch, A., Webster, R., Lark, R. M. and Storkey, J. 2014. Understanding the scale-dependence of the relations between soil conditions and weed density and the implications for precision management of weeds. Aspects of Applied Biology. 127, pp. 165-171.
Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria
A - Papers appearing in refereed journals
Tahseen, Q. and Clark, I. M. 2014. Attraction and preference of bacteriophagous and plant-parasitic nematodes towards different types of soil bacteria. Journal Of Natural History. 48, pp. 1485-1502. https://doi.org/10.1080/00222933.2013.873088
The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment
C2 - Non-edited contributions to conferences
Robinson, R. R., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2014. The impact of tissue type, growth stage and fertilizers on the community structure of cultured bacterial wheat endophytes in the Broadbalk experiment. American Phytopathological Society (APS).
Brazilian Microbiome Project: revealing the unexplored microbial diversity - challenges and prospects
A - Papers appearing in refereed journals
Pylro, V. S., Roesch, L. F. W., Ortega, J. M., Do Amaral, A. M., Totola, M. R., Hirsch, P. R., Rosado, A. S., Goes-Neto, A., Da Costa Da Silva, A. L., Rosa, C. A., Morais, D. K., Andreote, F. D., Duarte, G. F., De Melo, I. S., Seldin, L., Lambais, M. R., Hungria, M., Peixoto, R. S., Kruger, R. H., Tsai, S. M. and Azevedo, V. 2014. Brazilian Microbiome Project: revealing the unexplored microbial diversity - challenges and prospects. Microbial Ecology. 67, pp. 237-241. https://doi.org/10.1007/s00248-013-0302-4
Data analysis for 16S microbial profiling from different benchtop sequencing platforms
A - Papers appearing in refereed journals
Pylro, V. S., Roesch, L. F. W., Morais, D. K., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2014. Data analysis for 16S microbial profiling from different benchtop sequencing platforms. Journal of Microbiological Methods. 107 (December), pp. 30-37. https://doi.org/10.1016/j.mimet.2014.08.018
Climate change increases risk of fusarium wheat ear blight on wheat in central China
A - Papers appearing in refereed journals
Zhang, X., Halder, J., White, Robin P., Hughes, D. J., Ye, Z., Wang, C., Xu, R., Gan, B. and Fitt, B. D. L. 2014. Climate change increases risk of fusarium wheat ear blight on wheat in central China. Annals of Applied Biology - AAB. 164 (3), pp. 384-395. https://doi.org/10.1111/aab.12107
Leptosphaeria spp., phoma stem canker and potential spread of L. maculans on oilseed rape crops in China
A - Papers appearing in refereed journals
Zhang, X., White, Robin P., Demir, E., Jedryczka, M., Lange, R. M., Islam, M., Li, Z. Q., Huang, Y. J., Hall, A. M., Zhou, G., Wang, Z., Cai, X., Skelsey, P. and Fitt, B. D. L. 2014. Leptosphaeria spp., phoma stem canker and potential spread of L. maculans on oilseed rape crops in China. Plant Pathology. 63 (3), pp. 598-612. https://doi.org/10.1111/ppa.12146
A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Devonshire, J., Ward, E. and Hirsch, P. R. 2014. A combined cryo-scanning electron microscopy/cryoplaning approach to study the infection of Meloidogyne incognita eggs by Pochonia chlamydosporia. Nematology. 16, pp. 1059-1067. https://doi.org/10.1163/15685411-00002830
Triaxial testing to determine the effect of soil type and organic carbon content on soil consolidation and shear deformation characteristics
A - Papers appearing in refereed journals
Chakraborty, D., Watts, C. W., Powlson, D. S., Macdonald, A. J., Ashton, R. W., White, Robin P. and Whalley, W. R. 2014. Triaxial testing to determine the effect of soil type and organic carbon content on soil consolidation and shear deformation characteristics. Soil Science Society of America Journal. 78, pp. 1192-1200. https://doi.org/10.2136/sssaj2014.01.0007
Quantifying the impact of microbes on soil structural development and behaviour in wet soils
A - Papers appearing in refereed journals
Helliwell, J. R., Miller, A. J., Whalley, W. R., Mooney, S. J. and Sturrock, C. J. 2014. Quantifying the impact of microbes on soil structural development and behaviour in wet soils. Soil Biology and Biochemistry. 74, pp. 138-147. https://doi.org/10.1016/j.soilbio.2014.03.009
Baseline map of organic carbon in Australian soil to support national carbon accounting and monitoring under climate change
A - Papers appearing in refereed journals
Viscarra Rossell, R. A., Webster, R., Bui, E. N. and Baldock, J. A. 2014. Baseline map of organic carbon in Australian soil to support national carbon accounting and monitoring under climate change. Global Change Biology. 20 (9), pp. 2953-2970. https://doi.org/10.1111/gcb.12569
Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation
A - Papers appearing in refereed journals
Mendiondo, G. M., Medhurst, A., Van Roermund, C. W., Zhang, X., Devonshire, J., Scholefield, D., Fernandez, J., Axcell, B., Ramsay, L., Waterham, H. R., Waugh, R., Theodoulou, F. L. and Holdsworth, M. J. 2014. Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation. Journal of Experimental Botany. 65, pp. 4833-4847. https://doi.org/10.1093/jxb/eru243
Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Roberts, R., Powers, S. J. and Hirsch, P. R. 2014. Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods. Letters in Applied Microbiology. 59 (2), pp. 238-246. https://doi.org/10.1111/lam.12270
Measuring the soil-microbial interface: extraction of extracellular polymeric substances (EPS) from soil biofilms
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Brookes, P. C., Evershed, R. P., Goulding, K. W. T. and Hirsch, P. R. 2014. Measuring the soil-microbial interface: extraction of extracellular polymeric substances (EPS) from soil biofilms. Soil Biology and Biochemistry. 72 (May), pp. 163-171. https://doi.org/10.1016/j.soilbio.2014.01.025
Air temperature, relative humidity, climate regionalization and thermal comfort of Nigeria
A - Papers appearing in refereed journals
Eludoyin, O. M., Adelekan, I. O., Webster, R. and Eludoyin, A. O. 2014. Air temperature, relative humidity, climate regionalization and thermal comfort of Nigeria. International Journal of Climatology. 34 (6), pp. 2000-2018. https://doi.org/10.1002/joc.3817
Mapping gamma radiation and its uncertainty from weathering products in a Tasmanian landscape with a proximal sensor and random forest kriging
A - Papers appearing in refereed journals
Viscarra Rossel, R. A., Webster, R. and Kidd, D. 2014. Mapping gamma radiation and its uncertainty from weathering products in a Tasmanian landscape with a proximal sensor and random forest kriging. Earth Surface Processes And Landforms. 39 (6), pp. 735-748. https://doi.org/10.1002/esp.3476
Distribution and speciation of iron and zinc in grain of two wheat genotypes
A - Papers appearing in refereed journals
Eagling, T., Neal, A. L., McGrath, S. P., Fairweather-Tait, S., Shewry, P. R. and Zhao, F-J. 2014. Distribution and speciation of iron and zinc in grain of two wheat genotypes. Journal of Agricultural and Food Chemistry - JAFC. 62, pp. 708-716. https://doi.org/10.1021/jf403331p
Spatial variation of trace elements in the peri-urban soil of Madrid
A - Papers appearing in refereed journals
Vazquez De La Cueva, A., Marchant, B. P., Quintana, J. R., De Santiago, A., Lafuente, A. L. and Webster, R. 2014. Spatial variation of trace elements in the peri-urban soil of Madrid. Journal of Soils and Sediments. 14, pp. 78-88. https://doi.org/10.1007/s11368-013-0772-5
Biodiesel co-product (BCP) decreases soil nitrogen (N) losses to groundwater
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Armenise, E., Hirsch, P. R. and Brookes, P. C. 2014. Biodiesel co-product (BCP) decreases soil nitrogen (N) losses to groundwater. Water Air And Soil Pollution. 225, p. 1831. https://doi.org/10.1007/s11270-013-1831-7
A tutorial guide to geostatistics: computing and modelling variograms and kriging
A - Papers appearing in refereed journals
Oliver, M. A. and Webster, R. 2014. A tutorial guide to geostatistics: computing and modelling variograms and kriging. Catena. 113, pp. 56-69. https://doi.org/10.1016/j.catena.2013.09.006
Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting
C2 - Non-edited contributions to conferences
Robinson, R., Mauchline, T. H., Hirsch, P. R., Jackson, R., Frost, H. and Fraaije, B. A. 2013. Bacterial endophytes in wheat (Triticum aestivum): isolation, characterisation and bio-prospecting. Schneider, C. (ed.) Abstracts 5th International Symposium on Plant Protection and Plant Health in Europe: Endophytes for Plant Protection: the State of the Art, Berlin, 26-29 May 2013 . DPG, Braunschweig. pp. 4-6
Modelling the path to better soil applied pesticides
C2 - Non-edited contributions to conferences
Sweeney, P., Travis, K., Whalley, W. R., Whitmore, A. P., Dailey, A. G., Wu, L., Van Beinum, W. and Brown, C. 2013. Modelling the path to better soil applied pesticides. Abstracts Conference on Pesticide Behaviour in Soils, Water and Air, York, 2-4 September 2013 .
Systemic defense priming by Pseudomonas putida KT2440 in maize depends on benzoxazinoid exudation from the roots
A - Papers appearing in refereed journals
Neal, A. L. and Ton, J. 2013. Systemic defense priming by Pseudomonas putida KT2440 in maize depends on benzoxazinoid exudation from the roots. Plant Signaling and Behavior. 8, p. e22655. https://doi.org/10.4161/psb.22655
Mycorrhiza-induced resistance: more than the sum of its parts?
A - Papers appearing in refereed journals
Cameron, D. D., Neal, A. L., Van Wees, S. C. M. and Ton, J. 2013. Mycorrhiza-induced resistance: more than the sum of its parts? Trends in Plant Science. 18 (10), pp. 539-545. https://doi.org/10.1016/j.tplants.2013.06.004
Spatial analysis of gilgai patterns
G - Articles in popular magazines and other technical publications
Webster, R., Milne, A. E. and Lark, R. M. 2013. Spatial analysis of gilgai patterns. Pedometron. 33, pp. 4-9.
Spatial heterogeneity of tectonic features in the area between Qatar-Kazerun and the Minab faults, the southeast of the Zagros fold-and-thrust belt, Iran
A - Papers appearing in refereed journals
Zadeh, R. M., Sarkarinejad, K. and Webster, R. 2013. Spatial heterogeneity of tectonic features in the area between Qatar-Kazerun and the Minab faults, the southeast of the Zagros fold-and-thrust belt, Iran. Geoinformatics and Geostatistics: an Overview. 1, p. 3. https://doi.org/10.4172/2327-4581.1000109
A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Armenise, E., White, Robin P., Hirsch, P. R. and Goulding, K. W. T. 2013. A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts. Soil Biology and Biochemistry. 67, pp. 166-173. https://doi.org/10.1016/j.soilbio.2013.08.017
Rational management decisions from uncertain spatial data
B - Book chapters etc edited externally
Dailey, A. G. and Webster, R. 2013. Rational management decisions from uncertain spatial data. in: Oliver, M. A., Marchant, B. P. and Bishop, T. F. A. (ed.) Precision agriculture for sustainability and environmental protection George Routledge & Sons London. pp. 61-81
How do roots elongate in a structured soil?
A - Papers appearing in refereed journals
Jin, K., Shen, J., Ashton, R. W., Dodd, I. C., Parry, M. A. J. and Whalley, W. R. 2013. How do roots elongate in a structured soil? Journal of Experimental Botany. 64, pp. 4761-4777. https://doi.org/10.1093/jxb/ert286
The involvement of gibberellin signalling in the effect of soil resistance to root penetration on leaf elongation and tiller number in wheat
A - Papers appearing in refereed journals
Coelho Filho, M. A., Colebrook, E. H., Lloyd, D. P. A., Webster, C. P., Mooney, S. J., Phillips, A. L., Hedden, P. and Whalley, W. R. 2013. The involvement of gibberellin signalling in the effect of soil resistance to root penetration on leaf elongation and tiller number in wheat. Plant and Soil. 371, pp. 81-94. https://doi.org/10.1007/s11104-013-1662-8
Measurement of the matric potential of soil water in the rhizosphere
A - Papers appearing in refereed journals
Whalley, W. R., Ober, E. S. and Jenkins, M. 2013. Measurement of the matric potential of soil water in the rhizosphere. Journal of Experimental Botany. 64, pp. 3951-3963. https://doi.org/10.1093/jxb/ert044
Investigation of photosynthate-C allocation 27 days after 13C-pulse labeling of Zea mays L. at different growth stages
A - Papers appearing in refereed journals
Meng, F., Dungait, J. A. J., Zhang, X., He, M., Guo, Y. and Wu, W. 2013. Investigation of photosynthate-C allocation 27 days after 13C-pulse labeling of Zea mays L. at different growth stages. Plant and Soil. 373, pp. 755-764. https://doi.org/10.1007/s11104-013-1841-7
Potential mineralization and nitrification in volcanic grassland soils in Chile
A - Papers appearing in refereed journals
Cardenas, L. M., Hatch, D. J., Scholefield, D., Jhurreea, D., Clark, I. M., Hirsch, P. R., Salazar, F., Rao-Ravella, S. and Alfaro, M. 2013. Potential mineralization and nitrification in volcanic grassland soils in Chile. Soil Science and Plant Nutrition. 59, pp. 380-391. https://doi.org/10.1080/00380768.2013.789395
Soil mechanical resistance and root growth and function
B - Book chapters etc edited externally
Whalley, W. R. and Bengough, A. G. 2013. Soil mechanical resistance and root growth and function. in: Beeckman, T. and Eshel, A. (ed.) Plant roots: the hidden half, 4th ed CRC Press, Boca Raton, Florida. pp. 37.1-37.15
Fluctuations in method-of-moments variograms caused by clustered sampling and their elimination by declustering and residual maximum likelihood estimation
A - Papers appearing in refereed journals
Marchant, B. P., Viscarra Rossel, R. A. and Webster, R. 2013. Fluctuations in method-of-moments variograms caused by clustered sampling and their elimination by declustering and residual maximum likelihood estimation. European Journal of Soil Science. 64 (4), pp. 401-409. https://doi.org/10.1111/ejss.12029
Estimating penetrometer resistance and matric potential from the velocities of shear and compression waves
A - Papers appearing in refereed journals
Gao, W., Watts, C. W., Ren, T., Shin, H-C., Taherzadeh, S., Attenborough, K., Jenkins, M. and Whalley, W. R. 2013. Estimating penetrometer resistance and matric potential from the velocities of shear and compression waves. Soil Science Society of America Journal. 77, pp. 721-728. https://doi.org/10.2136/sssaj2012.0394
Culture-independent molecular approaches to microbial ecology in soil and rhizosphere
B - Book chapters etc edited externally
Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2013. Culture-independent molecular approaches to microbial ecology in soil and rhizosphere. in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 45-55
Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits?
B - Book chapters etc edited externally
Hirsch, P. R., Miller, A. J. and Dennis, P. G. 2013. Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits? in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 229-242