B - Book chapters etc edited externally
Lambing, C. 2022. CTAB DNA Extraction and Genotyping-by-Sequencing to Map Meiotic Crossovers in Plants. in: Lambing, C. (ed.) Plant Gametogenesis New York Springer Nature. pp. 43-53
Authors | Lambing, C. |
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Editors | Lambing, C. |
Abstract | Reciprocal DNA crossovers between chromosomes form new allelic combinations and contribute to the formation of novel genetic diversity. Crossovers are formed during meiosis of germ cells and these recombination events have influenced plant genome evolution and are used during breeding to create improved plant varieties. Meiotic crossovers are not uniformly formed across the genome but instead occur in regions with low nucleosome density. The recombination landscape differs between the model plant organism Arabidopsis thaliana and crops such as rice and maize. Genotyping-by-sequencing is a technique that can detect crossover location and provide information on the recombination landscape genome-wide. This technique can be used to compare crossover position between ecotypes, species, and mutant lines to gain information on factors controlling meiotic recombination. In this protocol, we describe the steps to purify DNA from plant tissue, prepare 96 DNA libraries in parallel and perform quality control before next-generation sequencing. |
Keywords | CTAB DNA extraction; Crossover; DNA sequencing; Genotyping-by-sequencing; Meiosis; Plant; Recombination |
Page range | 43-53 |
Year of Publication | 2022 |
Book title | Plant Gametogenesis |
Publisher | Springer Nature |
Humana Press Inc | |
Place of publication | New York |
Edition | 1 |
Series | Methods and Protocols vol 2484 |
ISBN | 978-1-0716-2253-7 |
Digital Object Identifier (DOI) | https://doi.org/10.1007/978-1-0716-2253-7_4 |
PubMed ID | 35461443 |
Web address (URL) | https://link.springer.com/protocol/10.1007/978-1-0716-2253-7_4 |
Funder | Biotechnology and Biological Sciences Research Council |
Open access | Published as non-open access |
Output status | Published |
Publication dates | |
Online | 24 Apr 2022 |
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