The Plant Cell

Journal

TitleThe Plant Cell
AlternativePlant Cell
ISSN1532-298X
PublisherAmerican Society of Plant Biologists (ASPB)
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The lowdown on breakdown: Open questions in plant proteolysis

A - Papers appearing in refereed journals
Eckardt, N. A., Wittenberg, T. A., Bassham, D. C., Chen, P., Chen, Q., Fang, J., Genschik, P., Ghifari, A. S., Guercio, A. M., Gibbs, D. J., Heese, M., Jarvis, R. P., Michaeli, S., Murcha, M. W., Mursalimov, S., Noir, S., Palayam, M., Peixoto, B., Rodriguez, P. L., Schaller, A., Schnittger, A., Serino, G., Shabek, N., Stintzi, A., Theodoulou, F. L., Üstün, S., van Wijk, K. J., Wei, N., Xie, Q., Yu, F. and Zhang, H. 2024. The lowdown on breakdown: Open questions in plant proteolysis. The Plant Cell. p. koae193. https://doi.org/10.1093/plcell/koae193

BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition

A - Papers appearing in refereed journals
Zhang, H., Rundle, C., Winter, N., Miricescu, A., Mooney B. C., Bachmair, A., Graciet, E. and Theodoulou, F. L. 2024. BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition. The Plant Cell. p. koae117. https://doi.org/10.1093/plcell/koae117

Climate change challenges, plant science solutions

A - Papers appearing in refereed journals
Eckardt, N., Ainsworth, E., Bahuguna, R., Broadley, M., Busch, W., Carpita, N., Castrillo, G., Chory, J., DeHaan, L., Duarte, C., Henry, A., Krishna Jagadish, S., Langdale, J., Leakey, A., Liao, J., Lu, K., McCann, M., McKay, J., Odeny, D., De Oliveira, E., Platten, J., Rabbi, I., Rim, E. Y., Ronald, P., Salt, D., Shigenaga, A., Wang. E., Wolfe, M. and Zhang, X. 2023. Climate change challenges, plant science solutions. The Plant Cell. 35 (1), pp. 24 - 66. https://doi.org/10.1093/plcell/koac303

Synaptotagmins at the endoplasmic reticulum–plasma membrane contact sites maintain diacylglycerol homeostasis during abiotic stress

A - Papers appearing in refereed journals
Ruiz-Lopez, N., Perez-Sancho, J., Del Valle, A. E., Haslam, R. P., Vanneste, S., Catala, R., Perea-Resa, C., Van Damme, D., Garcia-Hernandez, S., Albert A., Vallarino, J., Lin, J., Friml, J., Macho, A. P., Salinas, J., Rosado, A., Napier, J. A., Amorim-Silva, V. and Botella, M. A. 2021. Synaptotagmins at the endoplasmic reticulum–plasma membrane contact sites maintain diacylglycerol homeostasis during abiotic stress. The Plant Cell. 33 (7), p. 2431–2453. https://doi.org/10.1093/plcell/koab122

Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis

A - Papers appearing in refereed journals
Bryant, F. M., Hughes, D. J., Hassani-Pak, K. and Eastmond, P. J. 2019. Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis. The Plant Cell. https://doi.org/10.1105/tpc.18.00892

Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice

A - Papers appearing in refereed journals
Brambilla, V., Martignago, D., Goretti, D., Cerise, M., Somssich, M., de Rosa, M., Galbiati, F., Shrestha, R., Lazzaro, F., Simon, R. and Fornara, F. 2017. Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice. The Plant Cell. 29 (11), pp. 2801-2816. https://doi.org/10.1105/tpc.17.00645

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

A - Papers appearing in refereed journals
Bechtold, U., Penfold, C. A., Jenkins, D. J., Legaie, R., Moore, J. D., Lawson, T., Matthews, J. S. A., Vialet-Chabrand, S. R. M., Baxter, L., Subramaniam, S., Hickman, R., Florance, H., Sambles, C., Salmon, D. L., Feil, R., Bowden, L., Hill, C., Baker, N. R., Lunn, J. E., Finkenstadt, B., Mead, A., Buchanan-Wollaston, V., Beynon, J., Rand, D. A., Wild, D. L., Denby, K. J., Ott, S., Smirnoff, N. and Mullineaux, P. M. 2016. Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. The Plant Cell. 28 (2), pp. 345-366. https://doi.org/10.1105/tpc.15.00910

A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness

A - Papers appearing in refereed journals
Hen-Avivi, S., Savin, O., Racovita, R. C., Lee, W-S., Adamski, N. M., Malitsky, S., Almekias-Siegl, E., Levy, M., Vautrin, S., Berges, H., Friedlander, G., Kartvelishvily, E., Ben-Zvi, G., Alkan, N., Uauy, C., Kanyuka, K., Jetter, R., Distelfeld, A. and Aharoni, A. 2016. A metabolic gene cluster in the wheat W1 and the barley Cer-cqu loci determines beta-diketone biosynthesis and glaucousness. The Plant Cell. 28 (6), pp. 1440-1460. https://doi.org/10.1105/tpc.16.00197

Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas synringae pv tomato DC3000

A - Papers appearing in refereed journals
Lewis, L. A., Polanski, K., De Torres-Zabala, M., Jayaraman, S., Bowden, L., Moore, J., Penford, C. A., Jenkins, D. J., Hill, C., Baxter, L., Kulasekaran, S., Truman, W., Littlejohn, G., Prusinska, J., Mead, A., Steinbrenner, J., Hickman, R., Rand, D., Wild, D. L., Ott, S., Buchanan-Wollaston, V., Smirnoff, N., Beynon, J., Denby, K. and Grant, M. 2015. Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas synringae pv tomato DC3000. The Plant Cell. 27, pp. 3038-3064. https://doi.org/10.1105/tpc.15.00471

PHOSPHATIDIC ACID PHOSPHOHYDROLASE regulates phosphatidylcholine biosynthesis in Arabidopsis by phosphatidic acid-mediated activation of CTP: PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE activity

A - Papers appearing in refereed journals
Craddock, C. P., Adams, N., Bryant, F. M., Kurup, S. and Eastmond, P. J. 2015. PHOSPHATIDIC ACID PHOSPHOHYDROLASE regulates phosphatidylcholine biosynthesis in Arabidopsis by phosphatidic acid-mediated activation of CTP: PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE activity. The Plant Cell. 27, pp. 1251-1264. https://doi.org/10.1105/tpc.15.00037

Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs

A - Papers appearing in refereed journals
Graham, N. S., Hammond, J. P., Lysenko, A., Mayes, S., O Lochlainn, S., Blasco, B., Bowen, H. C., Rawlings, C. J., Rios, J. J., Welham, S. J., Carion, P. W. C., Dupuy, L. X., King, G. J., White, P. J. and Broadley, M. R. 2014. Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26, pp. 2818-2830. https://doi.org/10.1105/tpc.114.128603

bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3

A - Papers appearing in refereed journals
Mendes, A., Kelly, A. A., Van-Erp, H., Shaw, E., Powers, S. J., Kurup, S. and Eastmond, P. J. 2013. bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3. The Plant Cell. 25, pp. 3104-3116. https://doi.org/10.1105/tpc.113.116343

Abnormal glycosphingolipid mannosylation triggers salicylic acid-mediated responses in Arabidopsis

A - Papers appearing in refereed journals
Mortimer, J. C., Yu, X., Albrecht, S., Sicilia, F., Huichalaf, M., Ampuero, D., Michaelson, L. V., Murphy, A. M., Matsunaga, T., Kurz, S., Stephens, E., Baldwin, T. C., Ishii, T., Napier, J. A., Weber, A. P. M., Handford, M. G. and Dupree, P. 2013. Abnormal glycosphingolipid mannosylation triggers salicylic acid-mediated responses in Arabidopsis. The Plant Cell. 25, pp. 1881-1894. https://doi.org/10.1105/tpc.113.111500

Reconstitution of plant alkane biosynthesis in yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex

A - Papers appearing in refereed journals
Bernard, A., Domergue, F., Pascal, S., Jetter, R., Renne, C., Faure, J-D., Haslam, R. P., Napier, J. A., Lessire, R. and Joubes, J. 2012. Reconstitution of plant alkane biosynthesis in yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex. The Plant Cell. 24, pp. 3106-3118. https://doi.org/10.1105/tpc.112.099796

Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism

A - Papers appearing in refereed journals
Fontaine, J-X., Terce-Laforgue, T., Armengaud, P., Clement, G., Renou, J-P., Pelletier, S., Catterou, M., Azzopardi, M., Gibon, Y., Lea, P. J., Hirel, B. and Dubois, F. 2012. Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. The Plant Cell. 24, pp. 4044-4065. https://doi.org/10.1105/tpc.112.103689

Leaf-induced gibberellin signaling is essential for internode elongation, cambial activity and fiber differentiation in tobacco stems

A - Papers appearing in refereed journals
Dayan, J., Voronin, N., Gong, F., Sun, T-P., Hedden, P., Fromm, H. and Aloni, R. 2012. Leaf-induced gibberellin signaling is essential for internode elongation, cambial activity and fiber differentiation in tobacco stems. The Plant Cell. 24, pp. 66-79. https://doi.org/10.1105/tpc.111.093096

Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs

A - Papers appearing in refereed journals
Plackett, A. R. G., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G. and Hedden, P. 2012. Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs. The Plant Cell. 24, pp. 941-960. https://doi.org/10.1105/tpc.111.095109

The transcription factor ABI4 is required for the ascorbic acid-dependent regulation of growth and regulation of jasmonate-dependent defense signaling pathways in Arabidopsis

A - Papers appearing in refereed journals
Kerchev, P. I., Pellny, T. K., Vivancos, P. D., Kiddle, G., Hedden, P., Driscoll, S. P., Vanacker, H., Verrier, P. J., Hancock, R. D. and Foyer, C. H. 2011. The transcription factor ABI4 is required for the ascorbic acid-dependent regulation of growth and regulation of jasmonate-dependent defense signaling pathways in Arabidopsis. The Plant Cell. 23, pp. 3319-3334. https://doi.org/10.1105/tpc.111.090100

Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis

A - Papers appearing in refereed journals
Roudier, F., Gissot, L., Beaudoin, F., Haslam, R. P., Michaelson, L. V., Marion, J., Molino, D., Lima, A., Bach, L., Morin, H., Tellier, F., Palauqui, J-C., Bellec, Y., Renne, C., Miquel, M., Dacosta, M., Vignard, J., Rochat, C., Markham, J. E., Moreau, P., Napier, J. A. and Faure, J-D. 2010. Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis. The Plant Cell. 22, pp. 364-375. https://doi.org/10.1105/tpc.109.071209

Misexpression of FATTY ACID ELONGATION1 in the Arabidopsis Epidermis Induces Cell Death and Suggests a Critical Role for Phospholipase A2 in This Process

A - Papers appearing in refereed journals
Reina-Pinto, J. J., Voisin, D., Kurdyukov, S., Faust, A., Haslam, R. P., Michaelson, L. V., Efremova, N., Franke, B., Schreiber, L., Napier, J. A. and Yephremov, A. 2009. Misexpression of FATTY ACID ELONGATION1 in the Arabidopsis Epidermis Induces Cell Death and Suggests a Critical Role for Phospholipase A2 in This Process. The Plant Cell. 21 (4), pp. 1252-1272. https://doi.org/10.1105/tpc.109.065565

Real-time quantitative RT-PCR: design, calculations and statistics

A - Papers appearing in refereed journals
Rieu, I. and Powers, S. J. 2009. Real-time quantitative RT-PCR: design, calculations and statistics. The Plant Cell. 21, pp. 1031-1033. https://doi.org/10.1105/tpc.109.066001

Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana

A - Papers appearing in refereed journals
Linka, N., Theodoulou, F. L., Haslam, R. P., Linka, M., Napier, J. A., Neuhaus, H. E. and Weber, A. P. M. 2008. Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. The Plant Cell. 20, pp. 3241-3257. https://doi.org/10.1105/tpc.108.062042

Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis

A - Papers appearing in refereed journals
Rieu, I., Eriksson, S., Powers, S. J., Gong, F., Griffiths, J., Woolley, L., Benlloch, R., Nilsson, O., Thomas, S. G., Hedden, P. and Phillips, A. L. 2008. Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis. The Plant Cell. 20, pp. 2420-2436. https://doi.org/10.1105/tpc.108.058818

The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism

A - Papers appearing in refereed journals
Achard, P., Gong, F., Cheminant, S., Alioua, M., Hedden, P. and Genschik, P. 2008. The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. The Plant Cell. 20, pp. 2117-2129. https://doi.org/10.1105/tpc.108.058941

The Arabidopsis ATNRT2.7 nitrate transporter controls nitrate content in seeds

A - Papers appearing in refereed journals
Chopin, F., Orsel, M., Dorbe, M-F., Chardon, F., Truong, H-N., Miller, A. J., Krapp, A. and Daniel-Vedele, F. 2007. The Arabidopsis ATNRT2.7 nitrate transporter controls nitrate content in seeds. The Plant Cell. 19, pp. 1590-1602. https://doi.org/10.1105/tpc.107.050542

Lack of respiratory chain complex 1 impairs alternative oxidase engagement and modulates redox signaling during elicitor-induced cell death in tobacco

A - Papers appearing in refereed journals
Vidal, G., Ribas-Carbo, M., Garmier, M., Dubertret, G., Rasmusson, A. G., Mathieu, C., Foyer, C. H. and De Paepe, R. 2007. Lack of respiratory chain complex 1 impairs alternative oxidase engagement and modulates redox signaling during elicitor-induced cell death in tobacco. The Plant Cell. 19, pp. 640-655. https://doi.org/10.1105/tpc.106.044461

Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis

A - Papers appearing in refereed journals
Griffiths, J., Murase, K., Rieu, I., Zentella, R., Zhang, Z-L., Powers, S. J., Gong, F., Phillips, A. L., Hedden, P., Sun, T-P. and Thomas, S. G. 2006. Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. The Plant Cell. 18 (12), pp. 3399-3414. https://doi.org/10.1105/tpc.106.047415

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production

A - Papers appearing in refereed journals
Martin, A., Lee, J., Kichey, T., Gerentes, D., Zivy, M., Tatout, C., Dubois, F., Balliau, T., Valot, B., Davanture, M., Terce-Laforgue, T., Quillere, I., Coque, M., Gallais, A., Gonzalez-Moro, M-B., Bethencourt, L., Habash, D. Z. and Lea, P. J. 2006. Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. The Plant Cell. 18, pp. 3252-3274. https://doi.org/10.1105/tpc.106.042689

The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling

A - Papers appearing in refereed journals
Chilley, P. M., Casson, S. A., Tarkowski, P., Hawkins, N. D., Wang, K. L-C., Hussey, P. J., Beale, M. H., Ecker, J. R., Sandberg, G. J. and Lindsey, K. 2006. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. The Plant Cell. 18, pp. 3058-3072. https://doi.org/10.1105/tpc.106.040790

Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses

A - Papers appearing in refereed journals
Foyer, C. H. and Noctor, G. 2005. Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses. The Plant Cell. 17 (7), pp. 1866-1875. https://doi.org/10.1105/tpc.105.033589

Biosynthesis of very-long-chain polyunsaturated fatty acids in transgenic oilseeds: constraints on their accumulation

A - Papers appearing in refereed journals
Abbadi, A., Domergue, F., Bauer, J., Napier, J. A., Welti, R., Zahringer, U., Cirpus, P. and Heinz, E. 2004. Biosynthesis of very-long-chain polyunsaturated fatty acids in transgenic oilseeds: constraints on their accumulation. The Plant Cell. 16, pp. 2734-2748.

Vacuolar sulfate transporters are essential determinants controlling internal distribution of sulfate in Arabidopsis

A - Papers appearing in refereed journals
Kataoka, T., Watanabe-Takahashi, A., Hayashi, N., Ohnishi, M., Mimura, T., Buchner, P. H., Hawkesford, M. J., Yamaya, T. and Takahashi, H. 2004. Vacuolar sulfate transporters are essential determinants controlling internal distribution of sulfate in Arabidopsis. The Plant Cell. 16, pp. 2693-2704.

The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation

A - Papers appearing in refereed journals
Dill, A., Thomas, S. G., Hu, J., Steber, C. M. and Sun, T-P. 2004. The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation. The Plant Cell. 16, pp. 1392-1405.

CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development

A - Papers appearing in refereed journals
Dievert, A., Dalal, M., Tax, F. E., Lacey, A. D., Huttly, A. K., Li, J. and Clark, S. E. 2003. CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development. The Plant Cell. 15 (5), pp. 1198-1211. https://doi.org/10.​1105/​tpc.​010504

Leaf mitochondria modulate whole leaf redox homeostasis, set antioxidant capacity, and determine stress resistance through altered signaling and diurnal regulation

A - Papers appearing in refereed journals
Dutilleul, C., Garmier, M., Noctor, G., Mathieu, C., Chetrit, P., Foyer, C. H. and De Paepe, R. 2003. Leaf mitochondria modulate whole leaf redox homeostasis, set antioxidant capacity, and determine stress resistance through altered signaling and diurnal regulation. The Plant Cell. 15, pp. 1212-1226.

Leaf vitamin C contents modulate plant defense transcripts and regulate genes that control development through hormone signaling

A - Papers appearing in refereed journals
Pastori, G. M., Kiddle, G., Antoniw, J. F., Bernard, S. M., Veljovic-Jovanovic, S., Verrier, P. J., Noctor, G. and Foyer, C. H. 2003. Leaf vitamin C contents modulate plant defense transcripts and regulate genes that control development through hormone signaling. The Plant Cell. 15 (4), pp. 939-951. https://doi.org/10.1105/tpc.010538

Plant metabolomics: the missing link in functional genomics strategies

A - Papers appearing in refereed journals
Hall, R., Beale, M. H., Fiehn, O., Hardy, N., Sumner, N. and Bino, R. 2002. Plant metabolomics: the missing link in functional genomics strategies. The Plant Cell. 14, pp. 1437-1440. https://doi.org/10.1105/tpc.140720

A GAL4-like protein is involved in the switch between biotrophic and necrotrophic phases of the infection process of Colletotrichum lindemuthianum on common bean

A - Papers appearing in refereed journals
Dufresne, M., Perfect, S., Pellier, A. L., Bailey, J. A. and Langin, I. 2000. A GAL4-like protein is involved in the switch between biotrophic and necrotrophic phases of the infection process of Colletotrichum lindemuthianum on common bean. The Plant Cell. 12, pp. 1579-1589.

Genetic interactions during root hair morphogenesis in Arabidopsis

A - Papers appearing in refereed journals
Parker, J. S., Cavell, A. C., Dolan, L., Roberts, K. and Grierson, C. S. 2000. Genetic interactions during root hair morphogenesis in Arabidopsis. The Plant Cell. 12, pp. 1961-1974.

Seed storage proteins: structures and biosynthesis

A - Papers appearing in refereed journals
Shewry, P. R., Napier, J. A. and Tatham, A. S. 1995. Seed storage proteins: structures and biosynthesis. The Plant Cell. 7 (7), pp. 945-956. https://doi.org/10.1105/tpc.7.7.945