The Defra wheat genetic improvement network (WGIN) [2003-2009]
Project (past)
| Project dates | 01 Jul 2003 to end of 31 Mar 2009 |
|---|---|
| Funder | Department of Environment, Food and Rural Affairs |
| Project number | 4610 |
| Department | Crop Performance and Improvement (CPI) Division |
| Plant-Pathogen Interactions (PPI) Division | |
| Plant Pathology and Microbiology (PPM) | |
| Plant Sciences (PSC) | |
| Grant ID | AR0709 |
Outputs
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DeepCount: In-Field Automatic Quantification of Wheat Spikes Using Simple Linear Iterative Clustering and Deep Convolutional Neural Networks
A - Papers appearing in refereed journals
Sadeghi-Tehran, P., Virlet, N., Ampe, E. M., Reyns, P. and Hawkesford, M. J. 2019. DeepCount: In-Field Automatic Quantification of Wheat Spikes Using Simple Linear Iterative Clustering and Deep Convolutional Neural Networks. Frontiers in Plant Science. 10, p. 1176. https://doi.org/10.3389/fpls.2019.01176
Searching for wheat resistance to aphids and wheat bulb fly in the historical Watkins and Gediflux wheat collections
A - Papers appearing in refereed journals
Aradottir, G. I., Martin, J. L., Clark, S. J., Pickett, J. A. and Smart, L. E. 2017. Searching for wheat resistance to aphids and wheat bulb fly in the historical Watkins and Gediflux wheat collections. Annals of Applied Biology - AAB. 170 (2), pp. 179-188. https://doi.org/10.1111/aab.12326
Plant fungal resistance gene. WO2017103582 (A1)
H1 - Patents granted
Kanyuka, K., Saintenac, C., Cambon, F., Langin, T., Lee, W-S. and Hammond-Kosack, K. E. 2015. Plant fungal resistance gene. WO2017103582 (A1).
Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop
A - Papers appearing in refereed journals
Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206. https://doi.org/10.1111/j.1365-3059.2010.02375.x
The role of the benzoxazinone pathway in aphid resistance in wheat (HGCA Project Report No. PR473)
D1 - Technical reports: non-confidential
Gordon-Weeks, R., Smart, L. E., Ahmad, S., Zhang, Y., Elek, H., Jing, H-C., Martin, J. L. and Pickett, J. A. 2010. The role of the benzoxazinone pathway in aphid resistance in wheat (HGCA Project Report No. PR473). Home Grown Cereals Authority (HGCA) Stoneleigh.
Nitrogen efficiency of wheat: genotypic and environmental variation and prospects for improvement
A - Papers appearing in refereed journals
Barraclough, P. B., Howarth, J. R., Jones, J., Lopez-Bellido, R., Parmar, S., Shepherd, C. E. and Hawkesford, M. J. 2010. Nitrogen efficiency of wheat: genotypic and environmental variation and prospects for improvement. European Journal of Agronomy. 33, pp. 1-11. https://doi.org/10.1016/j.eja.2010.01.005
Identifying traits to improve the nitrogen economy of wheat: recent advances and future prospects
A - Papers appearing in refereed journals
Foulkes, M. J., Hawkesford, M. J., Barraclough, P. B., Holdsworth, M. J., Kerr, S., Kightley, S. and Shewry, P. R. 2009. Identifying traits to improve the nitrogen economy of wheat: recent advances and future prospects. Field Crops Research. 114, pp. 329-342. https://doi.org/10.1016/j.fcr.2009.09.005
DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum
A - Papers appearing in refereed journals
Jing, H-C., Bayon, C., Kanyuka, K., Berry, S., Wenzl, P., Huttner, E., Kilian, A. and Hammond-Kosack, K. E. 2009. DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum. BMC Genomics. 10, p. 458 (17pp). https://doi.org/10.1186/1471-2164-10-458
Early leaf senescence is associated with an altered cellular redox balance in Arabidopsis cpr5/old1 mutants
A - Papers appearing in refereed journals
Jing, H-C., Hebeler, R., Oeljeklaus, S., Sitek, B., Stuhler, K., Meyer, H. E., Sturre, M. J. G., Hille, J., Warscheid, B. and Dijkwel, P. P. 2008. Early leaf senescence is associated with an altered cellular redox balance in Arabidopsis cpr5/old1 mutants. Plant Biology. 10(Suppl. 1), pp. 85-98. https://doi.org/10.1111/j.1438-8677.2008.00087.x
CPR5 - a Jack of all trades in plants
A - Papers appearing in refereed journals
Jing, H-C. and Dijkwel, P. P. 2008. CPR5 - a Jack of all trades in plants. Plant Signaling and Behavior. 3 (8), pp. 562-563. https://doi.org/10.4161/psb.3.8.5708
Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease
G - Articles in popular magazines and other technical publications
Jing, H-C., Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Triticum monococcum, an ancient relative of wheat, is a rich source of resistance to septoria tritici blotch disease. RRA Newsletter. 27, pp. 3-4.
Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction
A - Papers appearing in refereed journals
Jing, H-C., Lovell, D. J., Gutteridge, R. J., Jenk, D., Kornyukhin, D., Mitrofanova, O., Kema, G. H. J. and Hammond-Kosack, K. E. 2008. Phenotypic and genetic analysis of the Triticum monococcum-Mycosphaerella graminicola interaction. New Phytologist. 179, pp. 1121-1132. https://doi.org/10.1111/j.1469-8137.2008.02526.x
Take-all and the Wheat Genetic Improvement Network (WGIN)
G - Articles in popular magazines and other technical publications
Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Take-all and the Wheat Genetic Improvement Network (WGIN). RRA Newsletter. 27, pp. 1-2.
Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5
G - Articles in popular magazines and other technical publications
Gutteridge, R. J. and Hammond-Kosack, K. E. 2008. Assessment of the A.E. Watkins wheat collection in 2008 for resistance to foliar, stem base and root diseases. Objectives 2 and 5. WGIN Stakeholders' Newsletter. October, pp. 1-4.
Take-all: predicting the risk of damage
G - Articles in popular magazines and other technical publications
Gutteridge, R. J. 2008. Take-all: predicting the risk of damage. TAG Bulletin. 16, pp. 6-7.
Developmental and hormonal control of leaf senescence [Chapter 7]
B - Book chapters etc edited externally
Schippers, J. H. M., Jing, H-C., Hille, J. and Dijkwel, P. P. 2007. Developmental and hormonal control of leaf senescence [Chapter 7]. in: Gan, S. (ed.) Senescence processes in plants (Annual Plant Reviews, Vol. 26) Oxford Blackwell Publishing. pp. 145-170
Arabidopsis CPR5 is a senescence-regulatory gene with pleiotropic functions as predicted by the evolutionary theory of senescence
A - Papers appearing in refereed journals
Jing, H-C., Anderson, L., Sturre, M. J. G., Hille, J. and Dijkwel, P. P. 2007. Arabidopsis CPR5 is a senescence-regulatory gene with pleiotropic functions as predicted by the evolutionary theory of senescence. Journal of Experimental Botany. 58, pp. 3885-3894. https://doi.org/10.1093/jxb/erm237
Molecular genetic and genomic analysis of wheat-pathogen interactions
C2 - Non-edited contributions to conferences
Jing, H-C., Rudd, J. J., Kanyuka, K. and Hammond-Kosack, K. E. 2007. Molecular genetic and genomic analysis of wheat-pathogen interactions. Abstracts ENDURE Workshop RA4.2 Exploitation of Plant Genetic Resistance, Angers, 5-6 July 2007 . pp. 13
Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6)
G - Articles in popular magazines and other technical publications
Jing, H-C., Gutteridge, R. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) (Objective 6). WGIN Stakeholders' Newsletter. October, pp. 3-6.
Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6
G - Articles in popular magazines and other technical publications
Jing, H-C. and Hammond-Kosack, K. E. 2007. Exploiting Triticum monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships (RRes) Objective 6. Special WGIN Resources Newsletter. March 2007, pp. 2-6.
Wheat pathogens affecting yield and quality
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E. 2007. Wheat pathogens affecting yield and quality. Abstracts China-UK Wheat Workshop, Beijing, 10-11 December 2007 . pp. 20-21
Triticum monococcum as a reference species for wheat genetics and genomics
C2 - Non-edited contributions to conferences
Jing, H-C., Bayon, C., Gutteridge, R., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Phillips, A. L. and Hammond-Kosack, K. E. 2007. Triticum monococcum as a reference species for wheat genetics and genomics. Abstracts 4th UK Small Grain Cereal Genetics and Genomics Workshop: From Genes to Traits, Cambridge, 14-16 March 2007 .
Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum
A - Papers appearing in refereed journals
Jing, H-C., Kornyukhin, D., Kanyuka, K., Orford, S., Zlatska, A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2007. Identification of variation in adaptively important traits and genome-wide analysis of trait-marker associations in Triticum monococcum. Journal of Experimental Botany. 58, pp. 3749-3764. https://doi.org/10.1093/jxb/erm225
Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum
C2 - Non-edited contributions to conferences
Jing, H-C., Rudd, J. J. and Hammond-Kosack, K. E. 2007. Molecular genetic analysis of resistance to Mycosphaerella graminicola in Triticum monococcum. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 .
Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms
C2 - Non-edited contributions to conferences
Jing, H-C. and Hammond-Kosack, K. E. 2007. Molecular phylogeny and evolution of RAR1, a conserved zinc-binding protein in eukaryotic organisms. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 377-378
Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat
C2 - Non-edited contributions to conferences
Kanyuka, K., Jing, H., Rudd, J. J., Brown, J. and Hammond-Kosack, K. E. 2007. Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat. Abstracts 1st Workshop on TritiGenCOST Action FA0604: Triticae Genomics for the Advancement of Essential European Crops, Puerto de la Cruz, Tenerife, 1-3 October 2007 . pp. 54
Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships
G - Articles in popular magazines and other technical publications
Jing, H-C and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. April, pp. 2-3.
Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships
G - Articles in popular magazines and other technical publications
Phillips, A. L., Jing, H-C. and Hammond-Kosack, K. E. 2006. Exploiting T. monococcum as a model for detection of traits, genes and variant alleles and for identifying phenotype:genotype relationships. WGIN Stakeholders' Newsletter. October, pp. 2-4.
BIOEXPLOIT Project
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E., Tomas, J. and Smant, G. 2006. BIOEXPLOIT Project. EUCARPIA Bulletin. 33, pp. 32-35.
Forward genetics for gene discovery in wheat
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Jing, H-C., Tearall, K., Phillips, A. L. and Kanyuka, K. 2006. Forward genetics for gene discovery in wheat. Abstracts Joint Wellcome/ESF Conference on Crop Genomics, Trait Analysis and Breeding, Hinxton, 8-11 November 2006 . pp. 22
Triticum monococcum, the ancient grain which turned stone age nomads into farmers
C2 - Non-edited contributions to conferences
Jing, H-C., Lovell, D. J., Kornyukhin, D., Kanyuka, K., Orford, S., Field, M. A., Mitrofanova, O. P., Koebner, R. and Hammond-Kosack, K. E. 2006. Triticum monococcum, the ancient grain which turned stone age nomads into farmers. Abstracts 5th Plant Genomics European Meeting (Plant GEMs), Venice, 11-14 October 2006 . pp. P8.13
New approaches for durable disease resistance in wheat
C1 - Edited contributions to conferences/learned societies
Jing, H-C., Lovell, D. J., Kanyuka, K., Tearall, K. L., Phillips, A. L., Hammond-Kosack, K. E., Kornyukhin, D., Mitrofanova, O. P., Orford, S. and Koebner, R. 2005. New approaches for durable disease resistance in wheat. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 963-970
Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1
C2 - Non-edited contributions to conferences
Jing, H-C., Kornyukhin, D., Lovell, D. J., Kanyuka, K., Mitrofanova, O. P., Maguire, K., West, J. S. and Hammond-Kosack, K. E. 2005. Disease resistance in Triticum monococcum to major UK wheat pathogens: investigations of the roles of RAR1/SGT1. Abstracts Small Grain Cereals Workshop, Dundee, 9-11 March 2005 .
Ethylene-induced leaf senescence depends on age-related changes and OLD genes in Arabidopsis
A - Papers appearing in refereed journals
Jing, H-C., Schippers, J. H. M., Hille, J. and Dijkwel, P. P. 2005. Ethylene-induced leaf senescence depends on age-related changes and OLD genes in Arabidopsis. Journal of Experimental Botany. 56, pp. 2915-2923.
Fungal-plant interactions that influence the suppression of take-all disease in wheat-field soil
C2 - Non-edited contributions to conferences
Gutteridge, R. J. and Bateman, G. L. 2005. Fungal-plant interactions that influence the suppression of take-all disease in wheat-field soil. Abstracts Association of Independent Crop Consultants' Meeting, Harpenden, 20 September 2005 .
DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004)
D1 - Technical reports: non-confidential
Hammond-Kosack, K. E. 2004. DEFRA Wheat Genetic Improvement Network - WGIN (Annual/interim report for DEFRA project AR0709 2003-2004).