SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments
A - Papers appearing in refereed journals
Zhalnina, K., De Quadros, P. D., Gano, K. A., Davis-Richardson, A., Fagen, J. R., Brown, C. T., Giongo, A., Drew, J. C., Sayavedra-Soto, L. A., Arp, D. J., Camargo, F. A. O., Daroub, S. H., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2013. Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments. Frontiers in Microbiology. 4, p. 104. https://doi.org/10.3389/fmicb.2013.00104
Non-invasive characterization of pore-related and elastic properties of soils in linear Biot-Stoll theory using acoustic-to-seismic coupling
A - Papers appearing in refereed journals
Shin, H-C., Taherzadeh, S., Attenborough, K., Whalley, W. R. and Watts, C. W. 2013. Non-invasive characterization of pore-related and elastic properties of soils in linear Biot-Stoll theory using acoustic-to-seismic coupling. European Journal of Soil Science. 64 (3), pp. 308-323. https://doi.org/10.1111/ejss.12000
Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes
A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Esteves, I., Finetti-Sialer, M. M., Hirsch, P. R., Ward, E., Devonshire, J. and Hidalgo-Diaz, L. 2013. Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes. Journal of Nematology. 45 (1), pp. 1-7.
A novel grass hybrid to reduce flood generation in temperate regions
A - Papers appearing in refereed journals
Macleod, C. J. A., Humphreys, M. W., Whalley, W. R., Turner, L., Binley, A., Watts, C. W., Skot, L., Joynes, A., Hawkins, S., King, I. P., O'donovan, S. and Haygarth, P. M. 2013. A novel grass hybrid to reduce flood generation in temperate regions. Scientific Reports. 3, p. 1683. https://doi.org/10.1038/srep01683
Whole grains, type 2 diabetes, coronary heart disease and hypertension: links to the aleurone preferred over indigestible fiber
A - Papers appearing in refereed journals
Lillioja, S., Neal, A. L., Tapsell, L. and Jacobs, D. R. Jr 2013. Whole grains, type 2 diabetes, coronary heart disease and hypertension: links to the aleurone preferred over indigestible fiber. Biofactors. 39 (3), pp. 242-258. https://doi.org/10.1002/biof.1077
A dual-porous, inverse model of water retention to study biological and hydrological interactions in soil
A - Papers appearing in refereed journals
Laudone, G. M., Matthews, G. P., Gregory, A. S., Bird, N. R. A. and Whalley, W. R. 2013. A dual-porous, inverse model of water retention to study biological and hydrological interactions in soil. European Journal of Soil Science. 64 (3), pp. 345-356. https://doi.org/10.1111/ejss.12055
Applications of X-ray computed tomography for examining biophysical interactions and structural development in soil systems: a review
A - Papers appearing in refereed journals
Helliwell, J. R., Sturrock, C. J., Grayling, K. M., Tracy, S. R., Flavel, R. J., Young, I. M., Whalley, W. R. and Mooney, S. J. 2013. Applications of X-ray computed tomography for examining biophysical interactions and structural development in soil systems: a review. European Journal of Soil Science. 64 (3), pp. 279-297. https://doi.org/10.1111/ejss.12028
Soil physics: new approaches and emerging challenges
A - Papers appearing in refereed journals
Hallett, P., Mooney, S. and Whalley, W. R. 2013. Soil physics: new approaches and emerging challenges. European Journal of Soil Science. 64 (3), pp. 277-278. https://doi.org/10.1111/ejss.12053
Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain
A - Papers appearing in refereed journals
Neal, A. L., Geraki, K., Borg, S., Quinn, P., Mosselmans, J. F., Brinch-Pedersen, H. and Shewry, P. R. 2013. Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain. Journal Of Biological Inorganic Chemistry. 18, pp. 557-570. https://doi.org/10.1007/s00775-013-1000-x
Field sampling for environmental science and management
E - Books edited/written by staff member, alone/with others
Webster, R. and Lark, R. M. 2013. Field sampling for environmental science and management. Routledge Abingdon.
Genotypic variation in the ability of wheat roots to penetrate wax layers
A - Papers appearing in refereed journals
Whalley, W. R., Dodd, I. C., Watts, C. W., Webster, C. P., Phillips, A. L., Andralojc, P. J., White, Robin P., Davies, W. J. and Parry, M. A. J. 2013. Genotypic variation in the ability of wheat roots to penetrate wax layers. Plant and Soil. 364, pp. 171-179. https://doi.org/10.1007/s11104-012-1342-0
Natural capital and ecosystem services, developing an appropriate soils framework as a basis for valuation
A - Papers appearing in refereed journals
Robinson, D. A., Hockley, N., Cooper, D. M., Emmett, B. A., Keith, A. M., Lebron, I., Reynolds, B., Tipping, E., Tye, A. M., Watts, C. W., Whalley, W. R., Black, H. I. J., Warren, G. P. and Robinson, J. S. 2013. Natural capital and ecosystem services, developing an appropriate soils framework as a basis for valuation. Soil Biology and Biochemistry. 57, pp. 1023-1033. https://doi.org/10.1016/j.soilbio.2012.09.008
Two-dimensional spatial analysis of the seismic b -value and the Bouguer gravity anomaly in the southeastern part of the Zagros Fold-and-Thrust Belt, Iran: tectonic implications
A - Papers appearing in refereed journals
Sarkarinejad, K., Zadeh, R. M. and Webster, R. 2013. Two-dimensional spatial analysis of the seismic b -value and the Bouguer gravity anomaly in the southeastern part of the Zagros Fold-and-Thrust Belt, Iran: tectonic implications. Journal Of Asian Earth Sciences. 62, pp. 308-316. https://doi.org/10.1016/j.jseaes.2012.10.010
Mapping the three-dimensional variation of soil salinity in a rice-paddy soil
A - Papers appearing in refereed journals
Li, H. Y., Shi, Z., Webster, R. and Triantafilis, J. 2013. Mapping the three-dimensional variation of soil salinity in a rice-paddy soil. Geoderma. 195-196, pp. 31-41. https://doi.org/10.1016/j.geoderma.2012.11.005
The knowns, known unknowns and unknowns of sequestration of soil organic carbon
A - Papers appearing in refereed journals
Stockmann, U., Adams, M. A., Crawford, J. W., Field, D. J., Henakaarchchi, N., Jenkins, M., Minasny, B., McBratney, A. B., De Remy De Courcelles, V., Singh, K., Wheeler, I., Abbott, L., Angers, D. A., Baldock, J., Bird, M., Brookes, P. C., Chenu, C., Jastrow, J. D., Lal, R., Lehmann, J., O'donnell, A. G., Parton, W. J., Whitehead, D. and Zimmermann, M. 2013. The knowns, known unknowns and unknowns of sequestration of soil organic carbon. Agriculture, Ecosystems & Environment. 164, pp. 80-99. https://doi.org/10.1016/j.agee.2012.10.001
Light microscopy and cryo SEM observations on Pochonia chlamydosporia parasitism in root-knot nematodes
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Devonshire, J., Ward, E. and Hirsch, P. R. 2012. Light microscopy and cryo SEM observations on Pochonia chlamydosporia parasitism in root-knot nematodes. Abstracts 31st International Symposium of the European Society of Nematologists, Adana, Turkey, 23-27 September 2012 . pp. 215
The velocity of shear waves in unsaturated soil
A - Papers appearing in refereed journals
Whalley, W. R., Jenkins, M. and Attenborough, K. 2012. The velocity of shear waves in unsaturated soil. Soil & Tillage Research. 125, pp. 30-37. https://doi.org/10.1016/j.still.2012.05.013
The effect of compaction and shear deformation of saturated soil on hydraulic conductivity
A - Papers appearing in refereed journals
Whalley, W. R., Matthews, G. P. and Ferraris, S. 2012. The effect of compaction and shear deformation of saturated soil on hydraulic conductivity. Soil & Tillage Research. 125, pp. 23-29. https://doi.org/10.1016/j.still.2012.05.020
the 16S rRNA gene of Pasteuria penetrans provides an early diagnostic of infection of root-knot nematodes (Meloidogyne spp.)
A - Papers appearing in refereed journals
Rao, U., Mauchline, T. H. and Davies, K. G. 2012. the 16S rRNA gene of Pasteuria penetrans provides an early diagnostic of infection of root-knot nematodes (Meloidogyne spp.). Nematology. 14, pp. 799-804. https://doi.org/10.1163/156854112X627318
Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere
A - Papers appearing in refereed journals
Neal, A. L., Ahmad, S., Gordon-Weeks, R. and Ton, J. 2012. Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLOS ONE. 7, p. e35498 (10pp). https://doi.org/10.1371/journal.pone.0035498
Can the soil bacterium Cupriavidus necator sense ZnO nanomaterials and aqueous Zn2+ differentially?
A - Papers appearing in refereed journals
Neal, A. L., Kabengi, N., Grider, A. and Bertsch, P. M. 2012. Can the soil bacterium Cupriavidus necator sense ZnO nanomaterials and aqueous Zn2+ differentially? Nanotoxicology. 6, pp. 371-380. https://doi.org/10.3109/17435390.2011.579633
Structure, fluctuation and magnitude of a natural grassland soil metagenome
A - Papers appearing in refereed journals
Delmont, T. O., Prestat, E., Keegan, K. P., Faubladier, M., Robe, P., Clark, I. M., Pelletier, E., Hirsch, P. R., Meyer, F., Gilbert, J. A., Le Paslier, D., Simonet, P. and Vogel, T. M. 2012. Structure, fluctuation and magnitude of a natural grassland soil metagenome. The ISME Journal. 6, pp. 1677-1687. https://doi.org/10.1038/ismej.2011.197
Phytochelatins play a key role in arsenic accumulation and tolerance in the aquatic macrophyte Wolffia globosa
A - Papers appearing in refereed journals
Zhang, X., Uroic, M. K., Xie, W-Y., Zhu, Y-G., Chen, B-D., McGrath, S. P., Feldmann, J. and Zhao, F-J. 2012. Phytochelatins play a key role in arsenic accumulation and tolerance in the aquatic macrophyte Wolffia globosa. Environmental Pollution. 165, pp. 18-24. https://doi.org/10.1016/j.envpol.2012.02.009
The effects of compaction and soil drying on penetrometer resistance
A - Papers appearing in refereed journals
Gao, W., Watts, C. W., Ren, T. and Whalley, W. R. 2012. The effects of compaction and soil drying on penetrometer resistance. Soil & Tillage Research. 125, pp. 14-22. https://doi.org/10.1016/j.still.2012.07.006
Predicting penetrometer resistance from the compression characteristic of soil
A - Papers appearing in refereed journals
Gao, W., Ren, T., Bengough, A. G., Auneau, L., Watts, C. W. and Whalley, W. R. 2012. Predicting penetrometer resistance from the compression characteristic of soil. Soil Science Society of America Journal. 76, pp. 361-369. https://doi.org/10.2136/sssaj2011.0217
Roots, water and nutrient acquisition: let's get physical
A - Papers appearing in refereed journals
Chapman, N., Miller, A. J., Lindsey, K. and Whalley, W. R. 2012. Roots, water and nutrient acquisition: let's get physical. Trends in Plant Science. 17 (12), pp. 701-710. https://doi.org/10.1016/j.tplants.2012.08.001
Microbial ecological theory: current perspectives
E - Books edited/written by staff member, alone/with others
Ogilvie, L. A. and Hirsch, P. R. (ed.) 2012. Microbial ecological theory: current perspectives. Caister Academic Press, Norwich, Norfolk.
Mutualism: plant-microorganism interactions
B - Book chapters etc edited externally
Mauchline, T. H. 2012. Mutualism: plant-microorganism interactions. in: Hirsch, P. R. and Ogilvie, L. A. (ed.) Microbial ecology theory: current perspectives Caister Academic Press, Norwich, Norfolk. pp. 43-55
Predicting soil properties from the Australian soil visible-near infrared spectroscopic database
A - Papers appearing in refereed journals
Viscara Rossel, R. A. and Webster, R. 2012. Predicting soil properties from the Australian soil visible-near infrared spectroscopic database. European Journal of Soil Science. 63 (6), pp. 848-860. https://doi.org/10.1111/j.1365-2389.2012.01495.x
Who's who in the plant root microbiome?
A - Papers appearing in refereed journals
Hirsch, P. R. and Mauchline, T. H. 2012. Who's who in the plant root microbiome? Nature Biotechnology. 30, pp. 961-962. https://doi.org/10.1038/nbt.2387
Influence of organic matter on rheological properties of soil
A - Papers appearing in refereed journals
Markgraf, W., Watts, C. W., Whalley, W. R., Hrkac, T. and Horn, R. 2012. Influence of organic matter on rheological properties of soil. Applied Clay Science. 64, pp. 25-33. https://doi.org/10.1016/j.clay.2011.04.009
Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity
A - Papers appearing in refereed journals
Nyathi, Y., Zhang, X., Baldwin, J. M., Bernhardt, K., Johnson, B., Baldwin, S. A., Theodoulou, F. L. and Baker, A. 2012. Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity. FEBS Letters. 586 (16), pp. 2280-2286. https://doi.org/10.1016/j.febslet.2012.05.065
Isotope fractionation factors controlling isotopologue signatures of soil-emitted N2O produced by denitrification processes of various rates
C2 - Non-edited contributions to conferences
Lewicka-Szczebak, D., Well, R., Cardenas, L. M., Matthews, P., Misselbrook, T. H., Bol, R., Whalley, W. R. and Gregory, A. S. 2012. Isotope fractionation factors controlling isotopologue signatures of soil-emitted N2O produced by denitrification processes of various rates. Abstracts 6th International Symposium on Isotopomers, Washington, DC, 18-22 June 2012 . pp. 51
A dual porous model to predict the effects of soil structure on denitrification and N2O emission
C2 - Non-edited contributions to conferences
Laudone, G. M., Matthews, G. P., Bird, N. R. A., Whalley, W. R., Cardenas, L. M. and Gregory, A. S. 2012. A dual porous model to predict the effects of soil structure on denitrification and N2O emission. Abstracts 4th International Congress Eurosoil 2012, Bari, 2-6 July 2012 .
Carbon sequestration by fruit trees - Chinese apple orchards as an example
A - Papers appearing in refereed journals
Wu, T., Wang, Y., Yu, C., Chiarawipa, R., Zhang, X., Han, Z. and Wu, L. 2012. Carbon sequestration by fruit trees - Chinese apple orchards as an example. PLOS ONE. 7, p. e38883. https://doi.org/10.1371/journal.pone.0038883
The Pochonia chlamydosporia serine protease gene vcp1 is subject to regulation by carbon, nitrogen and pH: implications for nematode biocontrol
A - Papers appearing in refereed journals
Ward, E., Kerry, B. R., Manzanilla-Lopez, R. H., Mutua, G., Devonshire, J., Kimenju, J. and Hirsch, P. R. 2012. The Pochonia chlamydosporia serine protease gene vcp1 is subject to regulation by carbon, nitrogen and pH: implications for nematode biocontrol. PLOS ONE. 7, p. e35657. https://doi.org/10.1371/journal.pone.0035657
An assessment of a new model of dynamic fragmentation of soil with test data
A - Papers appearing in refereed journals
Gregory, A. S., Bird, N. R. A., Watts, C. W. and Whitmore, A. P. 2012. An assessment of a new model of dynamic fragmentation of soil with test data. Soil & Tillage Research. 120, pp. 61-68. https://doi.org/10.1016/j.still.2011.11.007
Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment
A - Papers appearing in refereed journals
Clark, I. M., Buchkina, N., Jhurreea, D., Goulding, K. W. T. and Hirsch, P. R. 2012. Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment. Philosophical Transactions of the Royal Society B-Biological Sciences. 367, pp. 1235-1244. https://doi.org/10.1098/rstb.2011.0314
Pasteuria endospores from Heterodera cajani (Nematoda: Heteroderidae) exhibit inverted attachment and altered germination in cross-infection studies with Globodera pallida (Nematoda: Heteroderidae)
A - Papers appearing in refereed journals
Mohan, S., Mauchline, T. H., Rowe, J., Hirsch, P. R. and Davies, K. G. 2012. Pasteuria endospores from Heterodera cajani (Nematoda: Heteroderidae) exhibit inverted attachment and altered germination in cross-infection studies with Globodera pallida (Nematoda: Heteroderidae). FEMS Microbiology Ecology. 79 (3), pp. 675-684. https://doi.org/10.1111/j.1574-6941.2011.01249.x
Spatial multivariate classification of an arable field into compact management zones based on past crop yields
A - Papers appearing in refereed journals
Milne, A. E., Webster, R., Ginsburg, D. and Kindred, D. 2012. Spatial multivariate classification of an arable field into compact management zones based on past crop yields. Computers and Electronics in Agriculture. 80, pp. 17-30. https://doi.org/10.1016/j.compag.2011.10.007