Application of non-linear mathematics and stochastic modelling to biological systems
Project (past)
| Project dates | 01 Apr 1999 to end of 31 Mar 2008 |
|---|---|
| Funder | Biotechnology and Biological Sciences Research Council |
| Project number | 4213 |
| Department | Biomathematics and Bioinformatics (BAB) |
| Research fish code | BBS/E/C/00004213 |
| Grant ID | BBS/E/C/00004213 |
Outputs
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Quantifying effects of simple wheat traits on yield in water-limited environments using a modelling approach
A - Papers appearing in refereed journals
Semenov, M. A., Martre, P. and Jamieson, P. D. 2009. Quantifying effects of simple wheat traits on yield in water-limited environments using a modelling approach. Agricultural and Forest Meteorology. 149 (6-7), pp. 1095-1104. https://doi.org/10.1016/j.agrformet.2009.01.006
Simulation of extreme weather events by a stochastic weather generator
A - Papers appearing in refereed journals
Semenov, M. A. 2008. Simulation of extreme weather events by a stochastic weather generator. Climate Research. 35 (3), pp. 203-212. https://doi.org/10.3354/cr00731
Quantifying the effect of uncertainty in soil moisture characteristics on plant growth using a crop simulation model
A - Papers appearing in refereed journals
Lawless, C., Semenov, M. A. and Jamieson, P. D. 2008. Quantifying the effect of uncertainty in soil moisture characteristics on plant growth using a crop simulation model. Field Crops Research. 106, pp. 138-147. https://doi.org/10.1016/j.fcr.2007.11.004
Utility of dynamical seasonal forecasts in predicting crop yield
A - Papers appearing in refereed journals
Semenov, M. A. and Doblas-Reyes, F. J. 2007. Utility of dynamical seasonal forecasts in predicting crop yield. Climate Research. 34 (1), pp. 71-81. https://doi.org/10.3354/cr034071
Reconciling alternative models of phenological development in winter wheat
A - Papers appearing in refereed journals
Jamieson, P. D., Brooking, I. R., Semenov, M. A., Mcmaster, G. S., White, J. W. and Porter, J. R. 2007. Reconciling alternative models of phenological development in winter wheat. Field Crops Research. 103, pp. 36-41. https://doi.org/10.1016/j.fcr.2007.04.009
Development of high-resolution UKCIP02-based climate change scenarios in the UK
A - Papers appearing in refereed journals
Semenov, M. A. 2007. Development of high-resolution UKCIP02-based climate change scenarios in the UK. Agricultural and Forest Meteorology. 144 (1-2), pp. 127-138. https://doi.org/10.1016/j.agrformet.2007.02.003
Deconvoluting nitrogen use efficiency in wheat: a simulation study
A - Papers appearing in refereed journals
Semenov, M. A., Jamieson, P. D. and Martre, P. 2007. Deconvoluting nitrogen use efficiency in wheat: a simulation study. European Journal of Agronomy. 26, pp. 283-294. https://doi.org/10.1016/j.eja.2006.10.009
Using weather generators in crop modelling
C1 - Edited contributions to conferences/learned societies
Semenov, M. A. 2006. Using weather generators in crop modelling. International Society of Horticultural Science (ISHS).
Modelling protein content and composition in relation to crop nitrogen dynamics for wheat
A - Papers appearing in refereed journals
Martre, P., Jamieson, P. D., Semenov, M. A., Zyskowski, R. F., Porter, J. R. and Triboi, E. 2006. Modelling protein content and composition in relation to crop nitrogen dynamics for wheat. European Journal of Agronomy. 25, pp. 138-154. https://doi.org/10.1016/j.eja.2006.04.007
Individual based model of slug population and spatial dynamics
A - Papers appearing in refereed journals
Choi, Y. H., Bohan, D. A., Potting, R. P. J., Semenov, M. A. and Glen, D. M. 2006. Individual based model of slug population and spatial dynamics. Ecological Modelling. 190, pp. 336-350. https://doi.org/10.1016/j.ecolmodel.2005.04.019
Assessing predictive skill of models to optimise crop management and design. Final report on Defra project AR0909
D1 - Technical reports: non-confidential
Sylvester-Bradley, R., Semenov, M. A., Lawless, C., Jaggard, K. W., Qi, A. and Foulkes, M. J. 2005. Assessing predictive skill of models to optimise crop management and design. Final report on Defra project AR0909.
Assessing lead-time for predicting wheat growth using a crop simulation model
A - Papers appearing in refereed journals
Lawless, C. and Semenov, M. A. 2005. Assessing lead-time for predicting wheat growth using a crop simulation model. Agricultural and Forest Meteorology. 135 (1-4), pp. 302-313. https://doi.org/10.1016/j.agrformet.2006.01.002
Climate change, non-point pollution and land use: modelling interactions (End of Award report to ESRC on Rural Economy and Land Use Programme project RES 224 25 0002)
D1 - Technical reports: non-confidential
Hanley, N., Aftab, A., Black, A. and Semenov, M. A. 2005. Climate change, non-point pollution and land use: modelling interactions (End of Award report to ESRC on Rural Economy and Land Use Programme project RES 224 25 0002).
Crop responses to climatic variation
A - Papers appearing in refereed journals
Porter, J. R. and Semenov, M. A. 2005. Crop responses to climatic variation. Philosophical Transactions of the Royal Society B-Biological Sciences. 360 (1463), pp. 2021-2035. https://doi.org/10.1098/rstb.2005.1752
Predicting a success of biological control of pest slugs using the slug-pathogenic nematode against pest slugs. Research grant report for grant MAF12241
D1 - Technical reports: non-confidential
Choi, Y., Semenov, M. A., Bohan, D. A. and Glen, D. M. 2005. Predicting a success of biological control of pest slugs using the slug-pathogenic nematode against pest slugs. Research grant report for grant MAF12241.
Modelling impacts of climate change on wheat yields in England and Wales: assessing drought risks
A - Papers appearing in refereed journals
Richter, G. M. and Semenov, M. A. 2005. Modelling impacts of climate change on wheat yields in England and Wales: assessing drought risks. Agricultural Systems. 84 (1), pp. 77-97. https://doi.org/10.1016/j.agsy.2004.06.011
Factor analytic multiplicative mixed models in the analysis of multiple experiments
A - Papers appearing in refereed journals
De Resende, M. D. V. and Thompson, R. 2004. Factor analytic multiplicative mixed models in the analysis of multiple experiments. Revista de Matemática e Estatística, São Paulo,. 22 (2), pp. 31-52.
Modelling protein content and composition in wheat
C1 - Edited contributions to conferences/learned societies
Jamieson, P. D., Martre, P., Samoil, V., Porter, J. R., Zyskowski, R., Semenov, M. A. and Triboi, E. 2004. Modelling protein content and composition in wheat. Fischer, T. (ed.) New Directions for a Diverse Planet: Proceedings 4th International Crop Science Congress, Brisbane, 26-September-1 October 2002 . Regional Institute, Gosford. pp. www.cropscience.org.au
Comments on the use of statistical tests in the comparison of stochastic weather generators by Qian et al. (2004)
A - Papers appearing in refereed journals
Semenov, M. A. and Welham, S. J. 2004. Comments on the use of statistical tests in the comparison of stochastic weather generators by Qian et al. (2004). Climate Research. 28 (1), pp. 83-84. https://doi.org/10.3354/cr028083
Perspectives of ANOVA, REML and a general linear mixed model
B - Book chapters etc edited externally
Cullis, B. R., Smith, A. B. and Thompson, R. 2004. Perspectives of ANOVA, REML and a general linear mixed model. in: Adams, N., Stephens, D., Hand, D. J. and Crowder, M. (ed.) Methods and models in statistics: in honour of Professor John Nelder FRS Imperial College Press. pp. 53-94
Prospects for statistical methods in animal breeding
A - Papers appearing in refereed journals
Thompson, R. and Mantysaari, E. 2004. Prospects for statistical methods in animal breeding. Journal of the Indian Society of Agricultural Statistics. 57 (Special Volume), pp. 15-25.
Multivariate character process models for the analysis of two or more correlated function-valued traits
A - Papers appearing in refereed journals
Jaffrezic, F., Thompson, R. and Pletcher, S. D. 2004. Multivariate character process models for the analysis of two or more correlated function-valued traits. Genetics. 168 (1), pp. 477-487. https://doi.org/10.1534/genetics.103.019554
Factor analytic multiplicative mixed models in the analysis of multi-environment forest field trials
C1 - Edited contributions to conferences/learned societies
Resende, M. D. V. and Thompson, R. 2004. Factor analytic multiplicative mixed models in the analysis of multi-environment forest field trials. Borralho, N. (ed.) Eucalyptus in a Changing World. Proceedings of the IUFRO Conference, Aveiro, 11-15 October 2004 .
Effects of pregnancy on daily milk yield of Holstein-Friesian dairy cattle
A - Papers appearing in refereed journals
Brotherstone, S., Thompson, R. and White, I. M. S. 2004. Effects of pregnancy on daily milk yield of Holstein-Friesian dairy cattle. Livestock Production Science. 87 (2-3), pp. 265-269. https://doi.org/10.1016/j.livprodsci.2003.07.014
Calculation of multiple-trait sire reliability for traits included in a dairy cattle fertility index
A - Papers appearing in refereed journals
Banos, G., Brotherstone, S., Thompson, R., Woolliams, J. A., Wall, E. and Coffey, M. P. 2004. Calculation of multiple-trait sire reliability for traits included in a dairy cattle fertility index. Animal Science. 79 (1), pp. 1-9. https://doi.org/10.1017/S1357729800054473
Comparison between deterministic and probabilistic algorithms of bounded Kolmogorov complexity
C1 - Edited contributions to conferences/learned societies
Semenov, M. A. 2003. Comparison between deterministic and probabilistic algorithms of bounded Kolmogorov complexity. Proceedings Genetic and Evolutionary Computation Conference, Chicago, 12-16 July 2003. pp. 260-263
A rational basis for design of wheat canopy ideotypes for UK environments. Final report for DEFRA project AR0906
D1 - Technical reports: non-confidential
Parker, S., Semenov, M. A. and Lawless, C. 2003. A rational basis for design of wheat canopy ideotypes for UK environments. Final report for DEFRA project AR0906.
Linking climate change predictions with crop simulation models
C1 - Edited contributions to conferences/learned societies
Semenov, M. A. 2003. Linking climate change predictions with crop simulation models. Proceedings BCPC International Congress - Crop Science and Technology 2003 . pp. 1181-1188
Analysis of convergence of an evolutionary algorithm with self-adaptation using a stochastic Lyapunov function
A - Papers appearing in refereed journals
Semenov, M. A. and Terkel, D. A. 2003. Analysis of convergence of an evolutionary algorithm with self-adaptation using a stochastic Lyapunov function. Evolutionary Computation. 11, pp. 363-379.
Methods for providing the first prevalence estimates of opiate use in Western Australia
A - Papers appearing in refereed journals
Choi, Y. H. and Comiskey, C. M. 2003. Methods for providing the first prevalence estimates of opiate use in Western Australia. International Journal of Drug Policy. 14, pp. 297-305.
Slugs and nematodes in a fighting arena - individual based models of parasitism
C1 - Edited contributions to conferences/learned societies
Choi, Y. H., Bohan, D. A., Semenov, M. A., Potting, R. P. J. and Glen, D. M. 2003. Slugs and nematodes in a fighting arena - individual based models of parasitism. Slugs and Snails: Agricultural, Veterinary and Environmental Perspectives. British Crop Protection Council Symposium Proceedings No. 80 . British Crop Protection Council (BCPC). pp. 177-182
Effects of elevated CO2 and drought on wheat: testing crop simulation models for different experimental and climatic conditions
A - Papers appearing in refereed journals
Ewert, E., Rodriguez, D., Jamieson, P., Semenov, M. A., Mitchell, R. A. C., Goudriaan, J., Porter, J. R., Kimball, B. A., Pinter, P. J. Jr, Manderscheid, R., Weigel, H-J., Fangmeier, A., Fereres, E. and Villalobos, F. 2002. Effects of elevated CO2 and drought on wheat: testing crop simulation models for different experimental and climatic conditions. Agriculture, Ecosystems & Environment. 93 (1-3), pp. 249-266. https://doi.org/10.1016/S0167-8809(01)00352-8
Modelling the transmission dynamics of Ross River virus in Southwestern Australia
A - Papers appearing in refereed journals
Choi, Y. H., Cominskey, C., Lindsay, M. D. A., Cross, J. A. and Anderson, M. 2002. Modelling the transmission dynamics of Ross River virus in Southwestern Australia. IMA Journal of Mathematics Applied in Medicine and Biology. 19, pp. 61-74.
Convergence velocity of an evolutionary algorithm with self-adaptation
C1 - Edited contributions to conferences/learned societies
Semenov, M. A. 2002. Convergence velocity of an evolutionary algorithm with self-adaptation. Proceedings Genetic and Evolutionary Computation Conference, GECCO 2002, New York, 9-13 July 2002 . pp. 210-214
Modelling the dynamics of slug and nematode interaction incorporating response to environmental variables
C2 - Non-edited contributions to conferences
Choi, Y-H., Powers, S. J., Bohan, D. A., Semenov, M. A., Glen, D. M., Wiltshire, C. W. and Brain, P. 2001. Modelling the dynamics of slug and nematode interaction incorporating response to environmental variables. Abstracts IMA Conference on Mathematical Modelling and Statistical Analysis of Infectious Diseases, Cardiff, 11-13 September 2001 .
Analysis of evolutionary search with mutators using a stochastic Lyapunov function
C1 - Edited contributions to conferences/learned societies
Semenov, M. A. 2001. Analysis of evolutionary search with mutators using a stochastic Lyapunov function. Proceedings Genetics and Evolutionary Computation Conference (GECCO 2001), San Francisco, 8-11 July 2001 . pp. 372-376
Modelling a slug population using differential equations
C2 - Non-edited contributions to conferences
Choi, Y-H., Powers, S. J., Bohan, D. A., Wiltshire, C. W., Glen, D. M. and Semenov, M. A. 2001. Modelling a slug population using differential equations. Abstracts Meeting of the OILB/IOBC Working Group on Integrated Control of Soil Pests, Subgroup on Integrated Control of Slugs and Snails, Lyons, 8-9 March 2001 .
Testing SIRIUS predictions against wheat data sets in the UK
C2 - Non-edited contributions to conferences
Richter, G. M., Semenov, M. A. and Mitchell, R. A. C. 2001. Testing SIRIUS predictions against wheat data sets in the UK. Abstracts 2nd International Symposium on Modelling Cropping Systems, Florence, 16-18 July 2001. pp. 165-166
Simplifying SIRIUS: development of a metamodel for wheat yield prediction
C2 - Non-edited contributions to conferences
Semenov, M. A., Brooks, R. J. and Jamieson, P. D. 2001. Simplifying SIRIUS: development of a metamodel for wheat yield prediction. Abstracts 2nd International Symposium on Modelling Cropping Systems, Florence, 16-18 July 2001.
Modelling the effects of CO2 and drought on wheat for different climatic conditions and cultivars
D1 - Technical reports: non-confidential
Ewert, F. 2001. Modelling the effects of CO2 and drought on wheat for different climatic conditions and cultivars. IACR Rothamsted Experimental Station, Harpenden.