CAS: Statistics and Ecoinformatics

Title	CAS: Statistics and Ecoinformatics
Type	Research cluster

Outputs

Sort by: Date Title

Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape

A - Papers appearing in refereed journals

Coston, D. J., Clark, S. J., Breeze, T. D., Field, L. M., Potts, S. G. and Cook, S. M. 2024. Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape. Pest Management Science. 80 (5), pp. 2383-2392. https://doi.org/10.1002/ps.7860

Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum)

Conference poster

Blyth, H. R., Zarsav, A., Smith, D., Kanyuka, K., Hassall, K. L., Michaelson, L. V., Rudd, J. J. and Haslam, R. P. 2024. Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum) . 32nd Fungal Genetics Conference. Asilomar Conference Grounds, Pacific Grove, CA 12 Mar 2024

Soil Map of Rothamsted Estate

N - Datasets

Avery, B. W., Catt, J. A., Coleman, K., Pino-Chandia, L. and Ostler, R. 2024. Soil Map of Rothamsted Estate. Rothamsted Research. https://doi.org/10.23637/rothamsted.98z89

The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years

A - Papers appearing in refereed journals

Poulton, P. R., Johnston, A. E., Glendining, M. J., White, R. P., Gregory, A. S., Clark, S. J., Gregory, W., Macdonald, A. J. and Powlson, D. S. 2024. The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years. Advances in Agronomy. 184, pp. 173-298. https://doi.org/10.1016/bs.agron.2023.11.003

Why do we make changes to the long-term experiments at Rothamsted?

A - Papers appearing in refereed journals

Poulton, P. R., Powlson, D. S., Glendining, M. J. and Gregory, A. S. 2024. Why do we make changes to the long-term experiments at Rothamsted? European Journal of Agronomy. 154 (March), p. 127062. https://doi.org/10.1016/j.eja.2023.127062

The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)

A - Papers appearing in refereed journals

Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193

Ecological Intensification and the sustainable use of fertilisers

A - Papers appearing in refereed journals

Storkey, J., Maclaren, C. and Mead, A. 2023. Ecological Intensification and the sustainable use of fertilisers. Proceedings of the International Fertiliser Society. 886, pp. 1-20.

Linking soil adsorption-desorption characteristics with grain zinc concentrations and uptake by teff, wheat and maize in different landscape positions in Ethiopia

A - Papers appearing in refereed journals

Kebede-Desta, M., Broadley, M., McGrath, S. P., Hernandez-Allica, J., Hassall, K. L., Gameda, S., Amede, T. and Haefele, S. M. 2023. Linking soil adsorption-desorption characteristics with grain zinc concentrations and uptake by teff, wheat and maize in different landscape positions in Ethiopia. Frontiers in Agronomy. 5, p. 1285880. https://doi.org/10.3389/fagro.2023.1285880

A new Rothamsted long-term field experiment for the twenty-first century - principles and practice

A - Papers appearing in refereed journals

Li, X., Storkey, J., Mead, A., Shield, I. F., Clark, I. M., Ostler, R., Roberts, B. and Dobermann, A. 2023. A new Rothamsted long-term field experiment for the twenty-first century - principles and practice. Agronomy for Sustainable Development - ASD. 43 (5), p. 60. https://doi.org/10.1007/s13593-023-00914-8

Identifying yield stability over time via time-varying GARCH processes and multivariate Horseshoe priors

C2 - Non-edited contributions to conferences

Addy, J., Maclaren, C. and Hassall, K. L. 2023. Identifying yield stability over time via time-varying GARCH processes and multivariate Horseshoe priors. 9th Channel Network Conference: CNC23. Wageningen, The Netherlands 23 Aug 2023

AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture

A - Papers appearing in refereed journals

Daykin, G. M., Aizen, M. A., Barrett, L. G., Bartlett, L. J., Batary, P., Garibaldi, L. A., Guncan, A., Gutam, S., Maas, B., Mitnala, J., Montano-Centellas, F., Muoni, T., Ockinger, E., Okechalu, O., Ostler, R., Potts, S. G., Rose, D. C., Topp, C. F. E., Usieta, H. O., Utoblo, O. G., Watson, C., Zou, Y., Sutherland, W. J. and Hood, A. S. C. 2023. AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture. PLOS ONE. 18 (6), p. e0285478. https://doi.org/10.1371/journal.pone.0285478

Identification of Traits Underpinning Good Breadmaking Performance of Wheat Grown with Reduced Nitrogen Fertilisation

A - Papers appearing in refereed journals

Shewry, P. R., Wood, A., Hassall, K. L., Pellny, T. K., Riche, A. B., Hussain, A., Shi, Z., Mosleth, E. F., Charlton, M., Poole, M., Jones, S., Newton, K., Penson, S., Tucker, G., Griffiths, S. and Hawkesford, M. J. 2023. Identification of Traits Underpinning Good Breadmaking Performance of Wheat Grown with Reduced Nitrogen Fertilisation. Journal of the Science of Food and Agriculture. 103 (15), pp. 7664-7672. https://doi.org/10.1002/jsfa.12848

Construction of a generalised farm typology to aid selection, targeting and scaling of on farm research

A - Papers appearing in refereed journals

Hassall, K. L., Baudron, F., MacLaren, C., Cairns, J. E., Ndhlela, T., McGrath, S. P., Nyagumbo, I. and Haefele, S. M. 2023. Construction of a generalised farm typology to aid selection, targeting and scaling of on farm research. Computers and Electronics in Agriculture. 212, p. 108074. https://doi.org/10.1016/j.compag.2023.108074

Current data and modeling bottlenecks for predicting crop yields in the United Kingdom

A - Papers appearing in refereed journals

Corcoran, E., Afshar, M., Curceac, S., Lashkari, A., Raza, M. M., Ahnert, S., Mead, A. and Morris, R. 2023. Current data and modeling bottlenecks for predicting crop yields in the United Kingdom. Frontiers in Sustainable Food Systems. 7, p. 1023169. https://doi.org/10.3389/fsufs.2023.1023169

Predicting intercrop competition, facilitation, and productivity from simple functional traits

A - Papers appearing in refereed journals

Maclaren, C., Waswa, W., Aliyu, K. T., Claessens, L., Mead, A., Schob, C., Vanlauwe, B. and Storkey, J. 2023. Predicting intercrop competition, facilitation, and productivity from simple functional traits. Field Crops Research. 297 (1 June), p. 108926. https://doi.org/10.1016/j.fcr.2023.108926

Design of Agricultural Field Experiments Accounting for both Complex Blocking Structures and Network Effects

A - Papers appearing in refereed journals

Koutra, V., Gilmour, S. G., Parker, B. M. and Mead, A. 2023. Design of Agricultural Field Experiments Accounting for both Complex Blocking Structures and Network Effects. Journal of Agricultural Biological and Environmental Statistics. 28 (3), p. 526–548. https://doi.org/10.1007/s13253-023-00544-3

Banker Plant Bonuses? The Benefits and Risks of Including Brassicas in Field Margins to Promote Conservation Biocontrol of Specialist Pests in Oilseed Rape

A - Papers appearing in refereed journals

Skellern, M. P., Clark, S. J., Ferguson, A. W., Watts, N. P. and Cook, S. M. 2023. Banker Plant Bonuses? The Benefits and Risks of Including Brassicas in Field Margins to Promote Conservation Biocontrol of Specialist Pests in Oilseed Rape. Insects. 14 (4), p. 349. https://doi.org/10.3390/insects14040349

Comparison of lipid profiles in the faeces of beef cattle fed three common temperate grass silage diets and their relevance to dietary composition

A - Papers appearing in refereed journals

Elayadeth-Meethal, M., Rivero, M. J., Mead, A., Lee, M. R. F. and Misselbrook, T. H. 2023. Comparison of lipid profiles in the faeces of beef cattle fed three common temperate grass silage diets and their relevance to dietary composition. Journal Of Animal And Feed Sciences. 32 (4), pp. 427-437. https://doi.org/10.22358/jafs/166079/2023

Long-term trends in yield variance of temperate managed grassland

A - Papers appearing in refereed journals

Macholdt, J., Hadasch, S., Macdonald, A. J., Perryman, S. A. M., Piepho, H., Scott, T., Styczen, M. E. and Storkey, J. 2023. Long-term trends in yield variance of temperate managed grassland. Agronomy for Sustainable Development - ASD. 43 (3), p. 37. https://doi.org/10.1007/s13593-023-00885-w

Spectral soil analysis for fertilizer recommendations by coupling with QUEFTS for maize in East Africa: A sensitivity analysis

A - Papers appearing in refereed journals

Hassall, K. L., Gashaw-Asrat, T., Haefele, S. M. and Breure, T. 2023. Spectral soil analysis for fertilizer recommendations by coupling with QUEFTS for maize in East Africa: A sensitivity analysis. Geoderma. 432, p. 116397. https://doi.org/10.1016/j.geoderma.2023.116397

The value of volunteer surveillance for the early detection of biological invaders

A - Papers appearing in refereed journals

Van Den Bosch, F., McRoberts, N., Bourhis, Y., Parnell, S. and Hassall, K. L. 2023. The value of volunteer surveillance for the early detection of biological invaders. Journal of Theoretical Biology. 560, p. 111385. https://doi.org/10.1016/j.jtbi.2022.111385

Evidence of collaborative opportunities to ensure long-term sustainability in African farming

A - Papers appearing in refereed journals

El-Fartassi, I., Milne, A. E., El Alami, R., Rafiqi, M., Hassall, K. L., Waine, T., Zawadzka, J., Diarra, A. and Corstanje, R. 2023. Evidence of collaborative opportunities to ensure long-term sustainability in African farming. Journal of Cleaner Production. 392, p. 136170. https://doi.org/10.1016/j.jclepro.2023.136170

Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.

A - Papers appearing in refereed journals

Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. 21 (6), pp. 1097-1099. https://doi.org/10.1111/pbi.14026

Reducing dietary acrylamide exposure from wheat products through crop management and imaging

A - Papers appearing in refereed journals

Oddy, J., Addy, J., Mead, A., Hall, C., Mackay, C., Ashfield, T., Mcdiarmid, F., Curtis, T. Y., Raffan, S., Wilkinson, M. D., Elmore, J. S., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Reducing dietary acrylamide exposure from wheat products through crop management and imaging. Journal of Agricultural and Food Chemistry - JAFC. 71 (7), pp. 3403-3413. https://doi.org/10.1021/acs.jafc.2c07208

Linking Legacies: Realising the Potential of the Rothamsted Long-Term Agricultural Experiments

B - Book chapters etc edited externally

Ostler, R., Glendining, M. J. and Perryman, S. A. M. 2023. Linking Legacies: Realising the Potential of the Rothamsted Long-Term Agricultural Experiments. in: Williamson, H. F. and Leonelli, S. (ed.) Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development Springer. pp. 125-147

Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype

A - Papers appearing in refereed journals

Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. 4, pp. 51-60. https://doi.org/10.1038/s43016-022-00671-z

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

A - Papers appearing in refereed journals

Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. Phytopathology. 112 (11), pp. 49-49.

Multi-tier archetypes to characterise British landscapes, farmland and farming practices

A - Papers appearing in refereed journals

Goodwin, C. E. D., Butikofer, L., Hatfield, J. H., Evans, P. M., Bullock, J. M., Storkey, J., Mead, A., Richter, G. M., Henrys, P. A., Pywell, R. F. and Redhead, J. W. 2022. Multi-tier archetypes to characterise British landscapes, farmland and farming practices. Environmental Research Letters. 17 (9), p. 095002. https://doi.org/10.1088/1748-9326/ac810e

Quantifying inherent predictability and spatial synchrony in the aphid vector Myzus persicae - field-scale patterns of abundance and regional forecasting error in the UK

A - Papers appearing in refereed journals

Bell, J. R., Clark, S. J., Stevens, M. and Mead, A. 2022. Quantifying inherent predictability and spatial synchrony in the aphid vector Myzus persicae - field-scale patterns of abundance and regional forecasting error in the UK. Pest Management Science. p. 7292. https://doi.org/10.1002/ps.7292

Novel molecules and target genes for vegetative heat tolerance in wheat

A - Papers appearing in refereed journals

Rose, T., Wilkinson, M. D., Lowe, C., Xu, J., Hughes, D. J., Hassall, K. L., Hassani-Pak, K., Amberkar, S., Noleto-Dias, C., Ward, J. L. and Heuer, S. 2022. Novel molecules and target genes for vegetative heat tolerance in wheat. Plant Environmental Interactions. 3 (6), pp. 264-289. https://doi.org/10.1002/pei3.10096

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

Conference poster

A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades

A - Papers appearing in refereed journals

Addy, J. W. G., Ellis, R. H., MacLaren, C., Macdonald, A. J., Semenov, M. A. and Mead, A. 2022. A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Journal of the Royal Society Interface. 19 (193), p. 20220361. https://doi.org/10.1098/rsif.2022.0361

Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments

C2 - Non-edited contributions to conferences

Mead, A., MacLaren, C. and Storkey, J. 2022. Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022 International Biometric Society.

Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data

C2 - Non-edited contributions to conferences

Addy, J., Mead, A., Macdonald, A. J., Semenov, M. A. and Ellis, R. H. 2022. Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022

Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration

A - Papers appearing in refereed journals

Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 190 (2), pp. 1365-1383. https://doi.org/10.1093/plphys/kiac245

Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials

N - Datasets

Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xx

GrazeMore - milk yield data

N - Datasets

Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - milk yield data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xw

GrazeMore - grazing intake data

N - Datasets

Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing intake data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xv

GrazeMore - grazing activity data

N - Datasets

Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing activity data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xq

The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment.

D1 - Technical reports: non-confidential

Johnston, A. E., Poulton, P. R., Macdonald, A. J. and Glendining, M. J. 2022. The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment. https://doi.org/10.23637/wrn3-manag1938-2020-01