SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Effect of compaction on nitrous oxide and nitrogen emissions from UK soils
C1 - Edited contributions to conferences/learned societies
Cardenas, L. M., Matthews, G. P., Gregory, A. S., Whalley, W. R., Bird, N. R. A., Misselbrook, T. H., Laudone, G. M., Dhanoa, M. S. and Scholefield, D. 2016. Effect of compaction on nitrous oxide and nitrogen emissions from UK soils. Abstract for GGAA conferernce, Melbourne, 14-18 February, 2016.
The unique contribution of Rothamsted to ecological research at large temporal scales
B - Book chapters etc edited externally
Storkey, J., Macdonald, A. J., Bell, J. R., Clark, I. M., Gregory, A. S., Hawkins, N. J., Hirsch, P. R., Todman, L. C. and Whitmore, A. P. 2016. The unique contribution of Rothamsted to ecological research at large temporal scales. in: Dumbrell, A. J., Kordas, R. L. and Woodward, G. (ed.) Advances in Ecological Research 55: Large-Scale Ecology: Model Systems to Global Perspectives Academic Press, Oxford. pp. 3-42
Change from paddy rice to vegetable growing changes nitrogen-cycling microbial communities and their variation with depth in the soil
A - Papers appearing in refereed journals
Qin, H. L., Zhang, Z. X., Lu, J., Zhu, Y. J., Webster, R., Liu, X. L., Yuan, H. Z., Hou, H. J., Chen, C. L. and Wei, W. X. 2016. Change from paddy rice to vegetable growing changes nitrogen-cycling microbial communities and their variation with depth in the soil. European Journal of Soil Science. 67 (5), pp. 650-658. https://doi.org/10.1111/ejss.12365
Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes
A - Papers appearing in refereed journals
Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Wheat seed embryo excision enables the creation of axenic seedlings and Koch's postulates testing of putative bacterial endophytes. Scientific Reports. 6, p. 25581. https://doi.org/10.1038/srep25581
Sustainable grassland systems: a modelling perspective based on the North Wyke Farm Platform
A - Papers appearing in refereed journals
Wu, L., Zhang, X., Griffith, B. A. and Misselbrook, T. H. 2016. Sustainable grassland systems: a modelling perspective based on the North Wyke Farm Platform. European Journal of Soil Science. 67 (4), pp. 397-408. https://doi.org/10.1111/ejss.12304
Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison
A - Papers appearing in refereed journals
Jones, F. P., Clark, I. M., King, R., Shaw, L. J., Woodward, M. J. and Hirsch, P. R. 2016. Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. Scientific Reports. 6, p. 25858. https://doi.org/10.1038/srep25858
Long-term management changes in topsoil and subsoil organic carbon and nitrogen dynamics in a temperate agricultural system
A - Papers appearing in refereed journals
Gregory, A. S., Dungait, J. A. J., Watts, C. W., Bol, R., Dixon, E. R., White, R. P. and Whitmore, A. P. 2016. Long-term management changes in topsoil and subsoil organic carbon and nitrogen dynamics in a temperate agricultural system. European Journal of Soil Science. 67 (4), pp. 421-430. https://doi.org/10.1111/ejss.12359
Deep roots and soil structure
A - Papers appearing in refereed journals
Gao, W., Hodgkinson, L., Jin, K., Watts, C. W., Ashton, R. W., Shen, J., Ren, T., Dodd, I. C., Binley, A., Phillips, A. L., Hedden, P., Hawkesford, M. J. and Whalley, W. R. 2016. Deep roots and soil structure. Plant, Cell and Environment. 39 (8), pp. 1662-1668. https://doi.org/10.1111/pce.12684
Nanoparticles within WWTP sludges have minimal impact on leachate quality and soil microbial community structure and function
A - Papers appearing in refereed journals
Durenkamp, M., Pawlett, M., Ritz, K., Harris, J. A., Neal, A. L. and McGrath, S. P. 2016. Nanoparticles within WWTP sludges have minimal impact on leachate quality and soil microbial community structure and function. Environmental Pollution. 211 (April), pp. 399-405. https://doi.org/10.1016/j.envpol.2015.12.063
Modelling the electrical conductivity of soil in the Yangtze delta in three dimensions
A - Papers appearing in refereed journals
Li, H. Y., Marchant, B. P. and Webster, R. 2016. Modelling the electrical conductivity of soil in the Yangtze delta in three dimensions. Geoderma. 269, pp. 119-125. https://doi.org/10.1016/j.geoderma.2016.01.028
Greenhouse gas emissions and stocks of soil carbon and nitrogen from a 20-year fertilised wheat-maize intercropping system: a model approach
A - Papers appearing in refereed journals
Zhang, X., Xu, M., Liu, J., Sun, N., Wang, B. and Wu, L. 2016. Greenhouse gas emissions and stocks of soil carbon and nitrogen from a 20-year fertilised wheat-maize intercropping system: a model approach. Journal of Environmental Management. 167 (1 February), pp. 105-114. https://doi.org/10.1016/j.jenvman.2015.11.014
Modelling and predicting crop yield, soil carbon and nitrogen stocks under climate change scenarios with fertiliser management in the North China Plain
A - Papers appearing in refereed journals
Zhang, X., Xu, M., Sun, N., Xiong, W., Huang, S. and Wu, L. 2016. Modelling and predicting crop yield, soil carbon and nitrogen stocks under climate change scenarios with fertiliser management in the North China Plain. Geoderma. 265, pp. 176-186. https://doi.org/10.1016/j.geoderma.2015.11.027
Designing a sampling scheme to reveal correlations between weeds and soil properties at multiple spatial scales
A - Papers appearing in refereed journals
Metcalfe, H., Milne, A. E., Webster, R., Lark, R. M., Murdoch, A. J. and Storkey, J. 2016. Designing a sampling scheme to reveal correlations between weeds and soil properties at multiple spatial scales. Weed Research. 56 (1), pp. 1-13. https://doi.org/10.1111/wre.12184
Method to improve catalyst layer model for modelling proton exchange membrane fuel cell
A - Papers appearing in refereed journals
Zhang, X., Gao, Y., Ostadi, H., Jiang, K. and Chen, R. 2015. Method to improve catalyst layer model for modelling proton exchange membrane fuel cell. Journal Of Power Sources. 289, pp. 114-128. https://doi.org/10.1016/j.jpowsour.2015.04.152
Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops
C1 - Edited contributions to conferences/learned societies
Moughan, J., Mcmillan, V. E., Melichar, J., Ranner, D., Thornton, C., Whalley, W. R. and Hammond-Kosack, K. E. 2015. Uniting genetics and chemistry to reduce the risk of take-all disease in 2nd wheat crops. Abstracts 9th Symposium International Society for Root Research (ISRR) "Roots Down Under", Canberra, Australia, 6-9 Octomber, 2015. pp. P90
Exploring the susceptibility of cereal species to Phialophora fungi
C1 - Edited contributions to conferences/learned societies
Osborne, S., Mcmillan, V. E., Whalley, W. R., Foulkes, J. and Hammond-Kosack, K. E. 2015. Exploring the susceptibility of cereal species to Phialophora fungi. Abstracts Molecular Biology of Plant Pathogens Conference (MBPP), University of West England, Bristol, 8-9 April, 2015. pp. 56
Basic steps in geostatistics: the variogram and kriging
E - Books edited/written by staff member, alone/with others
Oliver, M. A. and Webster, R. 2015. Basic steps in geostatistics: the variogram and kriging. London, Springer-Verlag.
Combining micro-bottom-up and macro-top-down modelling responses to nutrient cycles in complex agricultural systems
A - Papers appearing in refereed journals
Burdock, R. P. and Crawford, J. W. 2015. Combining micro-bottom-up and macro-top-down modelling responses to nutrient cycles in complex agricultural systems. Nutrient Cycling in Agroecosystems. 103, pp. 257-278. https://doi.org/10.1007/s10705-015-9739-9
Metatranscriptomic census of active protists in soils
A - Papers appearing in refereed journals
Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M. and Urich, T. 2015. Metatranscriptomic census of active protists in soils. The ISME Journal. 9, pp. 2178-2190. https://doi.org/10.1038/ismej.2015.30
Growing innovations for the bioeconomy
A - Papers appearing in refereed journals
Karp, A., Beale, M. H., Beaudoin, F., Eastmond, P. J., Neal, A. L., Shield, I. F., Townsend, B. J. and Dobermann, A. 2015. Growing innovations for the bioeconomy. Nature Plants. 1, p. 15193. https://doi.org/10.1038/nplants.2015.193
Nitrous oxide emissions from fertilised UK arable soils: fluxes, emission factors and mitigation
A - Papers appearing in refereed journals
Bell, M. J., Hinton, N., Cloy, J. M., Topp, C. F. E., Rees, R. M., Cardenas, L. M., Scott, T., Webster, C. P., Ashton, R. W., Whitmore, A. P., Williams, J. R., Balshaw, H., Paine, F., Goulding, K. W. T. and Chadwick, D. R. 2015. Nitrous oxide emissions from fertilised UK arable soils: fluxes, emission factors and mitigation. Agriculture, Ecosystems & Environment. 212, pp. 134-147. https://doi.org/10.1016/j.agee.2015.07.003
Soil pH determines microbial diversity and composition in the Park Grass Experiment
A - Papers appearing in refereed journals
Zhalnina, K., Dias, R., De Quadros, P. D., Davis-Richardson, A., Camargo, F. A. O., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2015. Soil pH determines microbial diversity and composition in the Park Grass Experiment. Microbial Ecology. 69, pp. 395-406. https://doi.org/10.1007/s00248-014-0530-2
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038
Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity
A - Papers appearing in refereed journals
Liang, Y., Wu, Liyou, Clark, I. M., Xue, K., Yang, Y., Van Nostrand, J. D., Deng, Y., He, Z., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun, B. and Zhou, J. 2015. Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity. mBio. 6, pp. e00240-15. https://doi.org/10.1128/mBio.00240-15
Evolutionary longitudinal network dynamics of global zoonotic research
A - Papers appearing in refereed journals
Hossain, L., Karimi, F., Wigand, R. T. and Crawford, J. W. 2015. Evolutionary longitudinal network dynamics of global zoonotic research. Scientometrics. 103, pp. 337-353. https://doi.org/10.1007/s11192-015-1557-y
Networks of preparedness and response during Australian H1N1 outbreak
A - Papers appearing in refereed journals
Hossain, L., Bdeir, F., Crawford, J. W. and Wigand, R. T. 2015. Networks of preparedness and response during Australian H1N1 outbreak. Disaster Medicine and Public Health Preparedness. 9, pp. 155-165. https://doi.org/10.1017/dmp.2014.88
The importance of the microbial N cycle in soil for crop plant nutrition
B - Book chapters etc edited externally
Hirsch, P. R. and Mauchline, T. H. 2015. The importance of the microbial N cycle in soil for crop plant nutrition. in: Sariaslani, S. and Gadd, G. M. (ed.) Advances in Applied Microbiology Vol.93 Elsevier.
Engineering soil organic matter quality: Biodiesel Co-Product (BCP) stimulates exudation of nitrogenous microbial biopolymers
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Evershed, R. P., Kuhl, A., Armenise, E., White, Robin P., Hirsch, P. R., Goulding, K. W. T. and Brookes, P. C. 2015. Engineering soil organic matter quality: Biodiesel Co-Product (BCP) stimulates exudation of nitrogenous microbial biopolymers. Geoderma. 259-260, pp. 205-212. https://doi.org/10.1016/j.geoderma.2015.06.006
Soil organic matter and the extracellular microbial matrix show contrasting responses to C and N availability
A - Papers appearing in refereed journals
Redmile-Gordon, M. A., Evershed, R. P., Hirsch, P. R., White, Robin P. and Goulding, K. W. T. 2015. Soil organic matter and the extracellular microbial matrix show contrasting responses to C and N availability. Soil Biology and Biochemistry. 88, pp. 257-267. https://doi.org/10.1016/j.soilbio.2015.05.025
The use of electromagnetic induction to monitor changes in soil moisture profiles beneath different wheat genotypes
A - Papers appearing in refereed journals
Shanahan, P. W., Binley, A., Whalley, W. R. and Watts, C. W. 2015. The use of electromagnetic induction to monitor changes in soil moisture profiles beneath different wheat genotypes. Soil Science Society of America Journal. 79, pp. 459-466. https://doi.org/10.2136/sssaj2014.09.0360
The effect of impedance to root growth on plant architecture in wheat
A - Papers appearing in refereed journals
Jin, K., Shen, J., Ashton, R. W., White, Robin P., Dodd, I. C., Phillips, A. L., Parry, M. A. J. and Whalley, W. R. 2015. The effect of impedance to root growth on plant architecture in wheat. Plant and Soil. 392, pp. 323-332. https://doi.org/10.1007/s11104-015-2462-0
Simulation of nitrous oxide emissions at field scale using the SPACSYS model
A - Papers appearing in refereed journals
Wu, L., Rees, R. M., Tarsitano, D., Zhang, X., Jones, S. K. and Whitmore, A. P. 2015. Simulation of nitrous oxide emissions at field scale using the SPACSYS model. Science of the Total Environment. 530-531, pp. 76-86. https://doi.org/10.1016/j.scitotenv.2015.05.064
Technological developments for spatial prediction of soil properties, and Daniel Krige's influence on it
A - Papers appearing in refereed journals
Webster, R. 2015. Technological developments for spatial prediction of soil properties, and Daniel Krige's influence on it. Journal of the Southern African Institute of Mining and Metallurgy. 115 (1), pp. 165-172.
The Rothamsted Long-term Experiments
A - Papers appearing in refereed journals
Macdonald, A. J., Powlson, D. S., Poulton, P. R., Watts, C. W., Clark, I. M., Storkey, J., Hawkins, N. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2015. The Rothamsted Long-term Experiments. Aspects of Applied Biology. 128.
In situ measurements of organic carbon in soil profiles using vis-NIR spectroscopy on the Qinghai-Tibet plateau
A - Papers appearing in refereed journals
Li, S., Shi, Z., Chen, S., Ji, W., Zhou, L., Yu, W. and Webster, R. 2015. In situ measurements of organic carbon in soil profiles using vis-NIR spectroscopy on the Qinghai-Tibet plateau. Environmental Science & Technology. 49, pp. 4980-4987. https://doi.org/10.1021/es504272x
Isotope fractionation factors controlling isotopocule signatures of soil-emitted N2O produced by denitrification processes of various rates
A - Papers appearing in refereed journals
Lewicka-Szczebak, D., Well, R., Bol, R., Gregory, A. S., Matthews, G. P., Misselbrook, T. H., Whalley, W. R. and Cardenas, L. M. 2015. Isotope fractionation factors controlling isotopocule signatures of soil-emitted N2O produced by denitrification processes of various rates. Rapid Communications in Mass Spectrometry. 29 (3), pp. 269-282. https://doi.org/10.1002/rcm.7102
Mapping soil salinity in the Yangtze delta: REML and universal kriging (E-BLUP) revisited
A - Papers appearing in refereed journals
Li, H. Y., Webster, R. and Shi, Z. 2015. Mapping soil salinity in the Yangtze delta: REML and universal kriging (E-BLUP) revisited. Geoderma. 237-238, pp. 71-77. https://doi.org/10.1016/j.geoderma.2014.08.008
Exploring the spatial variation in the fertilizer-nitrogen requirement of wheat within fields
A - Papers appearing in refereed journals
Kindred, D. R., Milne, A. E., Webster, R., Marchant, B. P. and Sylvester-Bradley, R. 2015. Exploring the spatial variation in the fertilizer-nitrogen requirement of wheat within fields. The Journal of Agricultural Science. 153 (1), pp. 25-41. https://doi.org/10.1017/S0021859613000919
Wheat root growth responses to horizontal stratification of fertiliser in a water-limited environment
A - Papers appearing in refereed journals
Jin, K., Shen, J., Ashton, R. W., White, Robin P., Dodd, I. C., Parry, M. A. J. and Whalley, W. R. 2015. Wheat root growth responses to horizontal stratification of fertiliser in a water-limited environment. Plant and Soil. 386, pp. 77-88. https://doi.org/10.1007/s11104-014-2249-8
Short-term emissions of CO2 and N2O in response to periodic flood irrigation with waste water in the Mezquital Valley of Mexico
A - Papers appearing in refereed journals
Gonzalez-Mendez, B., Webster, R., Fiedler, S., Loza-Reyes, E., Harnandez, J. M., Ruiz-Suarez, L. G. and Siebe, C. 2015. Short-term emissions of CO2 and N2O in response to periodic flood irrigation with waste water in the Mezquital Valley of Mexico. Atmospheric Environment. 101, pp. 116-124. https://doi.org/10.1016/j.atmosenv.2014.10.048