Growing innovations for the bioeconomy

Karp, A., Beale, M. H., Beaudoin, F., Eastmond, P. J., Neal, A. L., Shield, I. F., Townsend, B. J. and Dobermann, A. 2015. Growing innovations for the bioeconomy. Nature Plants. 1, p. 15193. https://doi.org/10.1038/nplants.2015.193

Authors	Karp, A., Beale, M. H., Beaudoin, F., Eastmond, P. J., Neal, A. L., Shield, I. F., Townsend, B. J. and Dobermann, A.
Abstract	Agriculture is often viewed as a source of problems needing innovative solutions. But agriculture can actually be a source of innovations for the bioeconomy, if researchers embrace the cultural changes needed.
Year of Publication	2015
Journal	Nature Plants
Journal citation	1, p. 15193
Digital Object Identifier (DOI)	https://doi.org/10.1038/nplants.2015.193
Web address (URL)	http://rdcu.be/rLEq
Open access	Published as bronze (free) open access
Funder project or code	Cropping Carbon (CC) [ISPG]
	Maximising carbon harvest from perennial crops
Publisher's version	Karp_et_al-2015-Nature_Plants.pdf
Output status	Published
Publication dates
Online	01 Dec 2015
Copyright license	Publisher copyright
ISSN	2055-026X
Publisher	Nature Publishing Group

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A willow UDP-glycosyltransferase involved in salicinoid biosynthesis

A - Papers appearing in refereed journals

Kulasekaran, S., Cerezo-Medina, S., Harflett, C., Lomax, C., DeJong, F., Rendour, A., Ruvo, G., Hanley, S. J., Beale, M. H. and Ward, J. L. 2020. A willow UDP-glycosyltransferase involved in salicinoid biosynthesis. Journal of Experimental Botany. 72 (5), p. 1634–1648. https://doi.org/10.1093/jxb/eraa562

Turning sugar into oil - making photosynthesis blind to feedback inhibition

A - Papers appearing in refereed journals

Paul, M. J. and Eastmond, P. J. 2020. Turning sugar into oil - making photosynthesis blind to feedback inhibition. Journal of Experimental Botany. 71 (7), pp. 2216-2218. https://doi.org/10.1093/jxb/erz504

Big data from small tissue extraction of high-quality RNA for RNA-Sequencing from different oilseed Brassica seed tissues during seed development

A - Papers appearing in refereed journals

Siles-Suarez, L., Eastmond, P. J. and Kurup, S. 2020. Big data from small tissue extraction of high-quality RNA for RNA-Sequencing from different oilseed Brassica seed tissues during seed development . Plant Methods. 16, p. 80. https://doi.org/10.1186/s13007-020-00626-0

Crop Type Exerts Greater Influence Upon Rhizosphere Phosphohydrolase Gene Abundance and Phylogenetic Diversity than Phosphorus Fertilization.

A - Papers appearing in refereed journals

Neal, A. L., McLaren, T., Campolino, M. L., Hughes, D. J., Coelho, A. M., De Paula Lana, U. G., Gomes, E. A. and De Sousa, S. M. 2020. Crop Type Exerts Greater Influence Upon Rhizosphere Phosphohydrolase Gene Abundance and Phylogenetic Diversity than Phosphorus Fertilization. FEMS Microbiology Ecology. 97 (4), p. fiab033. https://doi.org/10.1093/femsec/fiab033

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

A - Papers appearing in refereed journals

Ward, J. L., Moing, A., Allwood, J. W., Aharoni, A., Baker, J., Beale, M. H., Ben-Dor, S., Biais, B., Brigante, F., Burger, Y., Deborde, C., Erban, A., Faigenboim, A., Gur, A., Goodacre, R., Hansen, T. H., Jacob, D., Katzir, N., Kopka, J., Lewinsohn, E., Maucourt, M., Meir, S., Miller, S., Mumm, R., Oren, E., Paris, H. S., Rogachev, I., Rolin, D., Saar, U., Schjoerring, J. K., Tadmor, Y., Tzuri, G., Vos, R. C. D., Ward, J. L., Yeselson, E., Hall, R. D. and Schaffer, A. A. 2020. Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity. Metabolites. 10 (3), pp. 121-147. https://doi.org/10.3390/metabo10030121

Miyabeacin: A new cyclodimer presents a potential role for willow in cancer therapy.

A - Papers appearing in refereed journals

Ward, J. L., Wu, Y., Harflett, C., Onafuye, H., Corol, D. I., Lomax, C., Macalpine, W. J., Cinatl, J., Wass, M. N., Michaelis, M. and Beale, M. H. 2020. Miyabeacin: A new cyclodimer presents a potential role for willow in cancer therapy. Scientific Reports. 10, p. 6477. https://doi.org/10.1038/s41598-020-63349-1

Down‐regulation of key genes involved in carbon metabolism in Medicago truncatula results in increased lipid accumulation in vegetative tissue

A - Papers appearing in refereed journals

Wijekoon, C., Singer, S. D., Weselake, R. J., Petrie, J. R., Chen, G., Singh, S., Eastmond, P. J. and Acharya, S. N. 2020. Down‐regulation of key genes involved in carbon metabolism in Medicago truncatula results in increased lipid accumulation in vegetative tissue . Crop Science. 60 (4), pp. 1798-1808. https://doi.org/10.1002/csc2.20124

DES2 is a fatty acid Delta 11 desaturase capable of synthesizing palmitvaccenic acid in the arbuscular mycorrhizal fungus Rhizophagus irregularis

A - Papers appearing in refereed journals

Cheeld, H., Bhutada, G., Beaudoin, F. and Eastmond, P. J. 2020. DES2 is a fatty acid Delta 11 desaturase capable of synthesizing palmitvaccenic acid in the arbuscular mycorrhizal fungus Rhizophagus irregularis. FEBS Letters. https://doi.org/10.1002/1873-3468.13762

Identification of a Δ11 desaturase from the arbuscular mycorrhizal fungus Rhizophagus irregularis

A - Papers appearing in refereed journals

Cheeld, H., Bhutada, G., Beaudoin, F. and Eastmond, P. J. 2020. Identification of a Δ11 desaturase from the arbuscular mycorrhizal fungus Rhizophagus irregularis. bioRxiv. https://doi.org/10.1101/2020.01.13.903815

Soil structure, nutrient status and water availability shape Uruguayan grassland prokaryotic communities

A - Papers appearing in refereed journals

Garaycochea, S., Romero, H., Beyhaut, E., Neal, A. L. and Altier, N. 2020. Soil structure, nutrient status and water availability shape Uruguayan grassland prokaryotic communities. FEMS Microbiology Ecology. 96 (12), p. fiaa207. https://doi.org/10.1093/femsec/fiaa207

Sulfated flavanones and dihydroflavonols from willow

A - Papers appearing in refereed journals

Noleto-Dias, C., Harflett, C., Beale, M. H. and Ward, J. L. 2020. Sulfated flavanones and dihydroflavonols from willow. Phytochemistry Letters. 35 (February), pp. 88-93. https://doi.org/10.1016/j.phytol.2019.11.008

Soil as an Extended Composite Phenotype of the Microbial Metagenome

A - Papers appearing in refereed journals

Neal, A. L., Bacq-Labreuil, A., Zhang, X., Clark, I. M., Coleman, K., Mooney, S. J., Ritz, K. and Crawford, J. W. 2020. Soil as an Extended Composite Phenotype of the Microbial Metagenome. Scientific Reports. 10, p. 10649. https://doi.org/10.1038/s41598-020-67631-0

Enhancement of total lipid production in vegetative tissues of alfalfa and sainfoin using chemical mutagenesis

A - Papers appearing in refereed journals

Wijekoon, C. P., Singer, S. D., Weselake, R. J., Petrie, J. R., Singh, S., Jayawardhane, K. N., Shah, S., Chen, G., Eastmond, P. J. and Acharya, S. N. 2019. Enhancement of total lipid production in vegetative tissues of alfalfa and sainfoin using chemical mutagenesis. Crop Science. 60 (6), pp. 2990-3003. https://doi.org/10.1002/csc2.20027

Development of a reproducible method of analysis of iron, zinc and phosphorus in vegetables digests by SEC-ICP-MS

A - Papers appearing in refereed journals

Dellaquila, C., Neal, A. L. and Shewry, P. R. 2019. Development of a reproducible method of analysis of iron, zinc and phosphorus in vegetables digests by SEC-ICP-MS . Food Chemistry. 308 (2020), p. 125652. https://doi.org/10.1016/j.foodchem.2019.125652

The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil

A - Papers appearing in refereed journals

Kaur, H., Wang, L., Stawniak, N., Sloan, R., Van-Erp, H., Eastmond, P. J. and Bancroft, I. 2019. The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13263

Estimation of the iron bioavailability in green vegetables using an in vitro digestion/Caco-2 cell model

A - Papers appearing in refereed journals

Rodriguez-Ramiro, I., Dellaquila, C., Ward, J. L., Neal, A. L., Bruggaber, S. F. A, Shewry, P. R. and Fairweather-Tail, S. 2019. Estimation of the iron bioavailability in green vegetables using an in vitro digestion/Caco-2 cell model. Food Chemistry. 301 (15 December), p. 125292. https://doi.org/10.1016/j.foodchem.2019.125292

Engineering the stereoisomeric structure of seed oil to mimic human milk fat

A - Papers appearing in refereed journals

Van-Erp, H., Bryant, F. M., Martin-Moreno, J., Michaelson, L. V., Bhutada, G. and Eastmond, P. J. 2019. Engineering the stereoisomeric structure of seed oil to mimic human milk fat. Proceedings of the National Academy of Sciences. 116 (42), pp. 20947-20952. https://doi.org/10.1073/pnas.1907915116

Exploring future food provision scenarios for China

A - Papers appearing in refereed journals

Ma, L., Bai, Z., Ma, M., Guo, M., Jiang, R., Liu, J., Oenema, O., Velthof, G. L., Whitmore, A. P., Crawford, J. W., Dobermann, A., Schwoob, M. and Zhang, F. 2019. Exploring future food provision scenarios for China. Environmental Science & Technology. 53 (3), pp. 1385-1393. https://doi.org/10.1021/acs.est.8b04375

Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis

A - Papers appearing in refereed journals

Bryant, F. M., Hughes, D. J., Hassani-Pak, K. and Eastmond, P. J. 2019. Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis. The Plant Cell. https://doi.org/10.1105/tpc.18.00892

Phenylalkanoid glycosides (non-salicinoids) from wood chips of Salix triandra × dasyclados hybrid willow

A - Papers appearing in refereed journals

Noleto-Dias, C., Wu, Y., Bellisai, A., Macalpine, W. J., Beale, M. H. and Ward, J. L. 2019. Phenylalkanoid glycosides (non-salicinoids) from wood chips of Salix triandra × dasyclados hybrid willow. Molecules. 24 (6), p. 1152. https://doi.org/10.3390/molecules24061152

Optimizing the bioenergy water footprint by selecting SRC willow canopy phenotypes: regional scenario simulations

A - Papers appearing in refereed journals

Richard, B., Richter, G. M., Cerasuolo, M. and Shield, I. F. 2019. Optimizing the bioenergy water footprint by selecting SRC willow canopy phenotypes: regional scenario simulations. Annals of Botany. 124 (4), pp. 531-542. https://doi.org/10.1093/aob/mcz006

Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture. Plant and Soil. 441 (1-2), p. 543–554. https://doi.org/10.1007/s11104-019-04144-4

Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype

A - Papers appearing in refereed journals

Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports. 9 (7473). https://doi.org/10.1038/s41598-019-43937-6

Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere

A - Papers appearing in refereed journals

Lui, Y., Neal, A. L., Zhang, X., Cui, E., Gao, F., Fan, X., Hu, C. and Li, Z. 2019. Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere. Biology And Fertility Of Soils. pp. 1-17. https://doi.org/10.1007/s00374-019-01361-y

Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil

A - Papers appearing in refereed journals

Neal, A. L. and Glendining, M. L. 2019. Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil. Soil Biology and Biochemistry. 139 (December), p. 107613. https://doi.org/10.1016/j.soilbio.2019.107613

Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation

A - Papers appearing in refereed journals

Cui, E., Fan, X., Li, Z., Liu, Y., Neal, A. L., Hu, C. and Gao, F. 2019. Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation. Applied Soil Ecology. 142, pp. 99-109. https://doi.org/10.1016/j.apsoil.2019.04.026

Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture.

A - Papers appearing in refereed journals

Bacq-Labreuila, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., McAuliffe, C., Zhang, X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002

The potential for production of high quality bio-coal from early harvested Miscanthus by hydrothermal carbonisation

A - Papers appearing in refereed journals

Smith, A. M., Whittaker, C., Shield, I. F. and Ross, A. B. 2018. The potential for production of high quality bio-coal from early harvested Miscanthus by hydrothermal carbonisation. Fuel. 220 (15 May), pp. 546-557. https://doi.org/10.1016/j.fuel.2018.01.143

Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive

E - Books edited/written by staff member, alone/with others

Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.

Dry matter losses and quality changes during short rotation coppice willow storage in chip or rod form

A - Papers appearing in refereed journals

Whittaker, C., Yates, N. E., Powers, S. J., Misselbrook, T. H. and Shield, I. F. 2018. Dry matter losses and quality changes during short rotation coppice willow storage in chip or rod form. Biomass & Bioenergy. 112, pp. 29-36. https://doi.org/10.1016/j.biombioe.2018.02.005

Natural variation in acyl editing is a determinant of seed storage oil composition

A - Papers appearing in refereed journals

Menard, G. N., Bryant, F. M., Kelly, A. A., Craddock, C. P., Lavagi, I., Hassani-Pak, K., Kurup, S. and Eastmond, P. J. 2018. Natural variation in acyl editing is a determinant of seed storage oil composition. Scientific Reports. 8, p. 17346. https://doi.org/10.1038/s41598-018-35136-6

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow, and poplar

A - Papers appearing in refereed journals

Clifton-Brown, J., Harfouche, A., Casler, M. D., Jones, H. D., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O., Donnison, I., Flavell, R., Greef, J., Hanley, S. J., Hastings, A., Hertzberg, M., Hsu, T., Huang, L., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I. F., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, J., Yamada, T., Yu, C. Y., Zalesny, R., Zong, J. and Lewandowski, I. 2018. Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow, and poplar. Global Change Biology. Bioenergy. https://doi.org/10.1111/gcbb.12566

The anaplerotic node is essential for the intracellular survival of Mycobacterium tuberculosis

A - Papers appearing in refereed journals

Basu, P., Sandhu, N., Bhatt, A., Singh, A., Balhana, R., Gobe, I., Crowhurst, N. A., Mendum, T. A., Gao, L., Ward, J. L., Beale, M. H., McFadden J. and Beste, D. J. V. 2018. The anaplerotic node is essential for the intracellular survival of Mycobacterium tuberculosis. Journal of Biological Chemistry. 293 (15), pp. 5695-5704. https://doi.org/10.1074/jbc.RA118.001839

New insights in the composition of wax and sterol esters in common and mutant sunflower oils revealed by ESI-MS/MS

A - Papers appearing in refereed journals

Broughton, R., Ruíz-Lopez, N., Hassall, K. L., Martínez-Force, E., Garcés, R., Salas, J. J. and Beaudoin, F. 2018. New insights in the composition of wax and sterol esters in common and mutant sunflower oils revealed by ESI-MS/MS. Food Chemistry. 269, pp. 70-79. https://doi.org/10.1016/j.foodchem.2018.06.135

Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities

A - Papers appearing in refereed journals

George, T. S., Giles, C. D., Menezes-Blackburn, D., Condron, L. M., Gama-Rodrigues, A. C., Jaisi, D., Lang, F., Neal, A. L., Stutter, M. I., Almeida, D. S., Bol, R., Cabugoa, K. G., Celi, L., Cotner, J. B., Feng, G., Goll, D. S., Hallama, M., Krueger, J., Plassard, C., Rosling, A., Darch, T., Fraser, T., Giesler, R., Richardson, A. E., Tamburini, F., Shand, C. A., Lumsdon, D. G., Zhang, H., Blackwell, M. S. A., Wearing, C., Mezeli, M. M., Almas, A. R., Audette, Y., Bertrand, I., Beyhaut, E., Boitt, G., Bradshaw, N., Brearley, C. A., Bruulsema, T. W., Ciais, P., Cozzolino, V., Duran, P. C., Mora, M. L., De Menezes, A. B., Dodd, R. J., Dunfield, K., Engl, C., Frazao, P. C., Garland, G., Gonzalez Jimenez, J. L., Graca, J., Granger, S. J., Harrison, A. F., Heuck, C., Hou, E. Q., Johnes, P. J., Kaiser, K., Kjaer, H. A., Klumpp, E., Lamb, A. L., Macintosh, K .A., Mackay, E. B., McGrath, J., McIntryre, C., McLaren, T., Meszaros, E., Missong, A., Mooshammer, M., Negron, C. P., Nelson, L. A., Pfahler, V., Poblete-Grant, P., Randall, M., Seguel, A., Seth, K., Smith , A. C., Smits, M. M., Sobaro, J. A., Spohn, M., Tawaraya, K., Tibbett, M., Voroney, P., Wallander, H., Wang, L., Wasaki, J. and Haygarth, P. M. 2018. Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427 (1-2), pp. 191-208. https://doi.org/10.1007/s11104-017-3391-x

Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere

A - Papers appearing in refereed journals

Liu, Y., Neal, A. L., Cui, E., Zhang, X., Li, Z., Xiao, Y., Du, Z., Gao, F., Fan, X. and Hu, C. 2018. Reducing water use by alternate-furrow irrigation with livestock wastewater reduces antibiotic resistance gene abundance in the rhizosphere but not in the non-rhizosphere . Science of the Total Environment. https://doi.org/10.1016/j.scitotenv.2018.08.101

Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics

A - Papers appearing in refereed journals

Torode, T. A., O'Neill, R., Marcus, S. E., Cornuault, V., Pose, S., Lauder, R. P., Kracun, S. K., Rydahl, M. G., Anderson, M. C. F., Willats, W. G. T., Braybrook, S. A., Townsend, B. J., Clausen, M. H. and Knox, J. P. 2018. Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics . Plant Physiology. 176 (2), pp. 1547-1558. https://doi.org/10.1104/pp.17.01568

Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution

A - Papers appearing in refereed journals

Cui, E-P., Gao, F., Liu, Y., Fan, X-Y., Li, Z-Y., Du, Z-J., Hu, C. and Neal, A. L. 2018. Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation : Proceed with caution. Environmental Pollution. 240, pp. 475-484. https://doi.org/10.1016/j.envpol.2018.04.143

Species and Genotype Effects of Bioenergy Crops on Root Production, Carbon and Nitrogen in Temperate Agricultural Soil

A - Papers appearing in refereed journals

Gregory, A. S., Dungait, J. A. J., Shield, I. F., Macalpine, W. J., Cunniff, J., Durenkamp, M., White, R. P., Joynes, A. and Richter, G. M. 2018. Species and Genotype Effects of Bioenergy Crops on Root Production, Carbon and Nitrogen in Temperate Agricultural Soil. BioEnergy Research. 11 (2), pp. 382-397. https://doi.org/10.1007/s12155-018-9903-6

Cultivation and Use of Basket Willows - a guide to growing basket willows

E - Books edited/written by staff member, alone/with others

Macalpine, W. J., Burns, H., Hammerin, A., Shield, I. F., Butcher, M., Davies, O. and Bertram, G. 2018. Cultivation and Use of Basket Willows - a guide to growing basket willows. The Basketmakers Association.

Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture

A - Papers appearing in refereed journals

Baco-Labreuil, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., Mcauliffe, C., Zhang, X. X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002

Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance

A - Papers appearing in refereed journals

Neal, A. L., Blackwell, M. S. A., Akkari, E., Clark, I. M., Hirsch, P. R. and Guyomar, C. 2018. Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. Plant and Soil. 427, pp. 175-189. https://doi.org/10.1007/s11104-017-3301-2

Salicin-7-sulfate: A new salicinoid from willow and implications for herbal medicine

A - Papers appearing in refereed journals

Noleto-Dias, C., Ward, J. L., Bellisai, A., Lomax, C. and Beale, M. H. 2018. Salicin-7-sulfate: A new salicinoid from willow and implications for herbal medicine. Fitoterapia. 127 (June), pp. 166-172. https://doi.org/10.1016/j.fitote.2018.02.009

Agronomic and environmental causes of yield and nitrogen use efficiency gaps in Chinese rice farming systems

A - Papers appearing in refereed journals

An, N., Wei, W., Qiao, L., Zhang, F., Christie, P., Jiang, R., Dobermann, A., Goulding, K. W. T., Fan, J. and Fan, M. 2018. Agronomic and environmental causes of yield and nitrogen use efficiency gaps in Chinese rice farming systems. European Journal of Agronomy. 93, pp. 40-49. https://doi.org/10.1016/j.eja.2017.11.001

Step changes in leaf oil accumulation via iterative metabolic engineering

A - Papers appearing in refereed journals

Vanhercke, T., Divi, Uday K., El Tahchy, A., Liu, Q., Mitchell, M., Taylor, M. C., Eastmond, P. J., Bryant, F., Mechanicos, A., Blundell, C., Zhi, Y., Belide, S., Shrestha, P., Zhou, X-R., Ral, J-P., White, R. G., Green, A., Singh, S. P. and Petrie, J. R. 2017. Step changes in leaf oil accumulation via iterative metabolic engineering. Metabolic Engineering. 39, pp. 237-246. https://doi.org/10.1016/j.ymben.2016.12.007

The role of bioenergy in a climate-changing world

A - Papers appearing in refereed journals

Souza, G. M., Ballester, M. V. R., de Brito Cruz, C. H., Chum, H. L., Dale, B., Dale, V. H., Fernandes, E. C. M., Foust, T., Karp, A., Lynd, L., Maciel Filho, R., Milanez, A., Nigro, F., Osseweijer, P., Verdade, L. M., Victoria, R. L. and Van der Wielen, L. 2017. The role of bioenergy in a climate-changing world. Environmental Development. 23 (September), pp. 57-64. https://doi.org/10.1016/j.envdev.2017.02.008

Engineering of tomato for the sustainable production of ketocarotenoids and its evaluation in aquaculture feed

A - Papers appearing in refereed journals

Nogueira, M., Enfissi, E. M. A., Martínez Valenzuela, M. E., Menard, G. N., Driller, R. L., Eastmond, P. J., Schuch, W., Sandmann, G. and Fraser, P. D. 2017. Engineering of tomato for the sustainable production of ketocarotenoids and its evaluation in aquaculture feed. Proceedings of the National Academy of Sciences. 114 (41), pp. 10876-10881. https://doi.org/10.1073/pnas.1708349114

A Palmitic Acid Elongase Affects Eicosapentaenoic Acid and Plastidial Monogalactosyldiacylglycerol Levels in Nannochloropsis

A - Papers appearing in refereed journals

Dolch, L-J., Rak, C., Perin, G., Tourcier, G., Broughton, R., Leterrier, M., Morosinotto, T., Tellier, F., Faure, J-D., Falconet, D., Jouhet, J., Sayanova, O. V., Beaudoin, F. and Maréchal, E. 2017. A Palmitic Acid Elongase Affects Eicosapentaenoic Acid and Plastidial Monogalactosyldiacylglycerol Levels in Nannochloropsis. Plant Physiology. 173 (1), pp. 742-759. https://doi.org/10.1104/pp.16.01420

Tailoring the composition of novel wax esters in the seeds of transgenic Camelina sativa through systematic metabolic engineering

A - Papers appearing in refereed journals

Ruiz-Lopez, N., Broughton, R., Usher, S. L., Salas, J. J., Haslam, R. P., Napier, J. A. and Beaudoin, F. 2017. Tailoring the composition of novel wax esters in the seeds of transgenic Camelina sativa through systematic metabolic engineering. Plant Biotechnology Journal. 15 (7), pp. 837-849. https://doi.org/10.1111/pbi.12679

When the need for change dawns

G - Articles in popular magazines and other technical publications

Dobermann, A. 2017. When the need for change dawns. Farm Business. (10 July).

Development of a statistical crop model to explain the relationship between seed yield and phenotypic diversity within the Brassica napus genepool

A - Papers appearing in refereed journals

Bennett, E., Brignell, C., Carion, P. W. C., Cook, S. M., Eastmond, P. J., Teakle, G., Hammond, J. P., Love, C., King, G. J., Roberts, J. A. and Wagstaff, C. 2017. Development of a statistical crop model to explain the relationship between seed yield and phenotypic diversity within the Brassica napus genepool. Agronomy. 7 (2), p. 31. https://doi.org/10.3390/agronomy7020031

Defining genetic and chemical diversity in wheat grain by 1H-NMR spectroscopy of polar metabolites

A - Papers appearing in refereed journals

Shewry, P. R., Corol, D. I., Jones, H. D., Beale, M. H. and Ward, J. L. 2017. Defining genetic and chemical diversity in wheat grain by 1H-NMR spectroscopy of polar metabolites. Molecular Nutrition & Food Research. 61 (7), p. 1600807. https://doi.org/10.1002/mnfr.201600807

Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant

A - Papers appearing in refereed journals

Luginbuehl, L. H., Menard, G. N., Kurup, S., Van-Erp, H., Radhakrishnan, G. V., Breakspear, A., Oldroyd, G. E. D. and Eastmond, P. J. 2017. Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant. Science - AAAS. 356 (6343), pp. 1175-1178. https://doi.org/10.1126/science.aan0081

Awake1, an ABC-type transporter, reveals an essential role for Suberin in the control of seed dormancy

A - Papers appearing in refereed journals

Fedi, F., O’neill, C. M., Menard, G., Trick, M., Dechirico, S., Corbineau, F., Bailly, C., Eastmond, P. J. and Penfield, S. 2017. Awake1, an ABC-type transporter, reveals an essential role for Suberin in the control of seed dormancy. Plant Physiology. 174 (1), pp. 276-283. https://doi.org/10.1104/pp.16.01556

Factors affecting wood, energy grass and straw pellet durability – A review

A - Papers appearing in refereed journals

Whittaker, C. and Shield, I. F. 2017. Factors affecting wood, energy grass and straw pellet durability – A review. Renewable & Sustainable Energy Reviews. 71 (May), pp. 1-11. https://doi.org/10.1016/j.rser.2016.12.119

Genome wide analysis of fatty acid desaturation and its response to temperature

A - Papers appearing in refereed journals

Menard, G. N., Martin-Moreno, J., Bryant, F. M., Munoz-Azcarate, O., Kelly, A. A., Hassani-Pak, K., Kurup, S. and Eastmond, P. J. 2017. Genome wide analysis of fatty acid desaturation and its response to temperature. Plant Physiology. 173 (3), pp. 1594-1605. https://doi.org/10.1104/pp.16.01907

C1 Metabolism Inhibition and Nitrogen Deprivation Trigger Triacylglycerol Accumulation in Arabidopsis thaliana Cell Cultures and Highlight a Role of NPC in Phosphatidylcholine-to-Triacylglycerol Pathway

A - Papers appearing in refereed journals

Mei, C. E., Cussac, M., Haslam, R. P., Beaudoin, F., Wong, Y. S., Marechal, E. and Rebeille, F. 2017. C1 Metabolism Inhibition and Nitrogen Deprivation Trigger Triacylglycerol Accumulation in Arabidopsis thaliana Cell Cultures and Highlight a Role of NPC in Phosphatidylcholine-to-Triacylglycerol Pathway. Frontiers in Plant Science. 7, p. 2014. https://doi.org/10.3389/fpls.2016.02014

Cyclin-dependent kinase activity enhances phosphatidylcholine biosynthesis in Arabidopsis by repressing phosphatidic acid phosphohydrolase activity

A - Papers appearing in refereed journals

Craddock, C. P., Adams, N., Kroon, J. T. M., Bryant, F. M., Hussey, P. J., Kurup, S. and Eastmond, P. J. 2017. Cyclin-dependent kinase activity enhances phosphatidylcholine biosynthesis in Arabidopsis by repressing phosphatidic acid phosphohydrolase activity. The Plant Journal. 89 (1), pp. 3-14. https://doi.org/10.1111/tpj.13321

Land-use influences phosphatase gene microdiversity in soils

A - Papers appearing in refereed journals

Neal, A. L., Rossmann, M., Brearley, C., Akkari, E., Guyomar, C., Clark, I. M., Allen, E. and Hirsch, P. R. 2017. Land-use influences phosphatase gene microdiversity in soils. Environmental Microbiology. 19 (7), p. 2740–2753. https://doi.org/10.1111/1462-2920.13778

Effects of cover crops on phosphatase activity in a clay arable soil in the UK

C1 - Edited contributions to conferences/learned societies

Reynolds, S. H., Ritz, K., Crotty, F. V., Stoate, C., West, H. and Neal, A. L. 2017. Effects of cover crops on phosphatase activity in a clay arable soil in the UK. Association of Applied Biologists (AAB).

Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology

A - Papers appearing in refereed journals

Hallingbäck, H. R., Fogelqvist, J., Powers, S. J., Turrion-Gomez, J., Rossiter, R., Amey, J., Martin, T., Weih, M., Gyllenstrand, N., Karp, A., Lagercrantz, U., Hanley, S. J., Berlin, S. and Rönnberg-Wästljung, A-C. 2016. Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology. Global Change Biology. Bioenergy. 8 (3), pp. 670-685. https://doi.org/10.1111/gcbb.12280

Translating the Sustainable Development Goals into action: A participatory backcasting approach for developing national agricultural transformation pathways

A - Papers appearing in refereed journals

Kanter, D. R., Schwoob, M. H., Baethgen, W. E., Bervejillo, J. E., Carriquiry, M., Dobermann, A., Ferraro, B., Lanfranco, B., Mondelli, M., Penengo, C., Saldias, R., Silva, M. E. and De Lima, J. M. S. 2016. Translating the Sustainable Development Goals into action: A participatory backcasting approach for developing national agricultural transformation pathways. Global Food Security. 10 (March), pp. 71-79. https://doi.org/10.1016/j.gfs.2016.08.002

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

A - Papers appearing in refereed journals

Hematy, K., Bellec, Y., Podicheti, R., Bouteiller, N., Anne, P., Morineau, C., Haslam, R. P., Beaudoin, F., Napier, J. A., Mockaitis, K., Gagliardi, D., Vaucheret, H., Lange, H. and Faure, J. D. 2016. The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis. PLOS Genetics. 12 (2), p. e1005817. https://doi.org/10.1371/journal.pgen.1005817

Metabolite Profiling of Sugarcane Genotypes and Identification of Flavonoid Glycosides and Phenolic Acids

A - Papers appearing in refereed journals

Coutinho, I. D., Baker, J. M., Ward, J. L., Beale, M. H., Creste, S. and Cavalheiro, A. J. 2016. Metabolite Profiling of Sugarcane Genotypes and Identification of Flavonoid Glycosides and Phenolic Acids. Journal of Agricultural and Food Chemistry - JAFC. 64 (21), pp. 4198-4206. https://doi.org/10.1021/acs.jafc.6b01210

Agronomic improvements can make future cereal systems in South Asia far more productive and result in a lower environmental footprint

A - Papers appearing in refereed journals

Ladha, J. K., Rao, A. N., Raman, A. K., Padre, A. T., Dobermann, A., Gathala, M., Kumar, V., Saharawat, Y., Sharma, S., Piepho, H. P., Alam, M. M., Liak, R., Rajendran, R., Reddy, C. K., Parsad, R., Sharma, P. C., Singh, S. S., Saha, A. and Noor, S. 2016. Agronomic improvements can make future cereal systems in South Asia far more productive and result in a lower environmental footprint. Global Change Biology. 22 (3), pp. 1054-1074. https://doi.org/10.1111/gcb.13143

Dual Fatty Acid Elongase Complex Interactions in Arabidopsis

A - Papers appearing in refereed journals

Morineau, C., Gissot, L., Bellec, Y., Hematy, K., Tellier, F., Renne, C., Haslam, R. P., Beaudoin, F., Napier, J. A. and Faure, J. D. 2016. Dual Fatty Acid Elongase Complex Interactions in Arabidopsis. PLOS ONE. 11 (9), p. 20. https://doi.org/10.1371/journal.pone.0160631

ACYL-ACYL CARRIER PROTEIN DESATURASE2 and 3 are responsible for making omega-7 fatty acids in the Arabidopsis aleurone

A - Papers appearing in refereed journals

Bryant, F. M., Munoz-Azcarate, O., Kelly, A. A., Beaudoin, F., Kurup, S. and Eastmond, P. J. 2016. ACYL-ACYL CARRIER PROTEIN DESATURASE2 and 3 are responsible for making omega-7 fatty acids in the Arabidopsis aleurone. Plant Physiology. 172 (1), pp. 154-162. https://doi.org/10.1104/pp.16.00836

Acutifoliside, a novel benzoic acid glycoside from Salix acutifolia

A - Papers appearing in refereed journals

Wu, Y., Dobermann, D., Beale, M. H. and Ward, J. L. 2016. Acutifoliside, a novel benzoic acid glycoside from Salix acutifolia. Natural Product Research. 30 (15), pp. 1731-1739. https://doi.org/10.1080/14786419.2015.1137571

Dry matter losses and methane emissions during wood chip storage: the impact on full life cycle greenhouse gas savings of short rotation coppice willow for heat

A - Papers appearing in refereed journals

Whittaker, C., Macalpine, W. J., Yates, N. E. and Shield, I. F. 2016. Dry matter losses and methane emissions during wood chip storage: the impact on full life cycle greenhouse gas savings of short rotation coppice willow for heat. BioEnergy Research. 9 (3), pp. 820-835. https://doi.org/10.1007/s12155-016-9728-0

How well does Miscanthus ensile for use in an anaerobic digestion plant?

A - Papers appearing in refereed journals

Whittaker, C., Hunt, J., Misselbrook, T. H. and Shield, I. F. 2016. How well does Miscanthus ensile for use in an anaerobic digestion plant? Biomass & Bioenergy. 88, pp. 24-34. https://doi.org/10.1016/j.biombioe.2016.03.018

Expression of castor LPAT2 enhances ricinoleic acid content at the sn-2 position of triacylglycerols in lesquerella seed

A - Papers appearing in refereed journals

Chen, G. Q., Van-Erp, H., Martin-Moreno, J., Johnson, K., Morales, E., Browse, J., Eastmond, P. J. and Lin, J-T. 2016. Expression of castor LPAT2 enhances ricinoleic acid content at the sn-2 position of triacylglycerols in lesquerella seed. International Journal Of Molecular Sciences. 17 (4), p. 507. https://doi.org/10.3390/ijms17040507

Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics

A - Papers appearing in refereed journals

Mumm, R., Hageman, J. A., Calingacion, M. N., De Vos, R. C. H., Jonker, H. H., Erban, A., Kopka, J., Hansen, T. H., Laursen, K. H., Schjoerring, J. K., Ward, J. L., Beale, M. H., Jongee, S., Rauf, A., Habibi, F., Indrasari, S. D., Sakhan, S., Ramli, A., Romero, M., Reinke, R. F., Ohtsubo, K., Boualaphanh, C., Fitzgerald, M. A. and Hall, R. D. 2016. Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics. Metabolomics. 12, p. 38. https://doi.org/10.1007/s11306-015-0925-1

Nanoparticles within WWTP sludges have minimal impact on leachate quality and soil microbial community structure and function

A - Papers appearing in refereed journals

Durenkamp, M., Pawlett, M., Ritz, K., Harris, J. A., Neal, A. L. and McGrath, S. P. 2016. Nanoparticles within WWTP sludges have minimal impact on leachate quality and soil microbial community structure and function. Environmental Pollution. 211 (April), pp. 399-405. https://doi.org/10.1016/j.envpol.2015.12.063

Development of a sink-source interaction model for the growth of short-rotation coppice willow and in silico exploration of genotype x environment effects

A - Papers appearing in refereed journals

Cerasuolo, M., Richter, G. M., Richard, B., Cunniff, J., Girbau, S., Shield, I. F., Purdy, S. and Karp, A. 2016. Development of a sink-source interaction model for the growth of short-rotation coppice willow and in silico exploration of genotype x environment effects. Journal of Experimental Botany. 67 (3), pp. 961-977. https://doi.org/10.1093/jxb/erv507

Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip

A - Papers appearing in refereed journals

Whittaker, C., Yates, N. E., Powers, S. J., Misselbrook, T. H. and Shield, I. F. 2016. Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip. BioEnergy Research. 9, pp. 288-302. https://doi.org/10.1007/s12155-015-9686-y

Dedicated biomass crops can enhance biodiversity in the arable landscape

A - Papers appearing in refereed journals

Haughton, A. J., Bohan, D. A., Clark, S. J., Mallott, M. D., Mallott, V., Sage, R. and Karp, A. 2016. Dedicated biomass crops can enhance biodiversity in the arable landscape. Global Change Biology. Bioenergy. 8 (6), pp. 1071-1081. https://doi.org/10.1111/gcbb.12312

1H-NMR screening for the high-throughput determination of genotype and environmental effects on the content of asparagine in wheat grain

A - Papers appearing in refereed journals

Corol, D. I., Ravel, C., Rakszegi, M., Charmet, G., Bedo, Z., Beale, M. H., Shewry, P. R. and Ward, J. L. 2016. 1H-NMR screening for the high-throughput determination of genotype and environmental effects on the content of asparagine in wheat grain. Plant Biotechnology Journal. 14 (1), pp. 128-139. https://doi.org/10.1111/pbi.12364

Fatty Acid Elongation Components And Uses Thereof (Patent US 8993841 B2 )

H1 - Patents granted

Napier, J. A., Sayanova, O. V. and Beaudoin, F. 2015. Fatty Acid Elongation Components And Uses Thereof (Patent US 8993841 B2 ) . US 8993841 B2

Exploiting Co-Benefits of Increased Rice Production and Reduced Greenhouse Gas Emission through Optimized Crop and Soil Management

A - Papers appearing in refereed journals

An, N., Fan, M., Zhang, F., Christie, P., Yang, J., Huang, J., Guo, S., Shi, X., Tang, Q., Peng, J., Zhong, X., Sun, Y., Lv, S., Jiang, R. and Dobermann, A. 2015. Exploiting Co-Benefits of Increased Rice Production and Reduced Greenhouse Gas Emission through Optimized Crop and Soil Management. PLOS ONE. 10 (10), p. e0140023. https://doi.org/10.1371/journal.pone.0140023

Educating and Training a Workforce for Nutrition in a Post-2015 World

A - Papers appearing in refereed journals

Fanzo, J. C., Graziose, M. M., Kraemer, K., Gillespie, S., Johnston, J. L., de Pee, S., Monterrosa, E., Badham, J., Bloem, M. W., Dangour, A. D., Deckelbaum, R., Dobermann, A., Fracassi, P., Hossain, S. M. M., Ingram, J., Jerling, J. C., Jones, C. J., Jap, S. I., Kiess, L., Marshall, Q., Martin, K., Narayan, A., Amuyunzu-Nayamongo, M., Pepping, F. and West, K. P. 2015. Educating and Training a Workforce for Nutrition in a Post-2015 World. Advances in Nutrition. 6 (6), pp. 639-647. https://doi.org/10.3945/an.115.010041

Breeding willow for short rotation coppice energy cropping

B - Book chapters etc edited externally

Shield, I. F., Macalpine, W. J., Hanley, S. J. and Karp, A. 2015. Breeding willow for short rotation coppice energy cropping. in: Cruz, V. M. V. and Dierig, D. A. (ed.) Industrial crops. Handbook of Plant Breeding 9 Springer, New York. pp. 67-80

ECERIFERUM2-LIKE proteins have unique biochemical and physiological functions in very-long-chain fatty acid elongation

A - Papers appearing in refereed journals

Haslam, T. M., Haslam, R. P., Thoraval, D., Pascal, S., Delude, C., Domergue, F., Fernandez, A. M., Beaudoin, F., Napier, J. A., Kunst, L. and Joubes, J. 2015. ECERIFERUM2-LIKE proteins have unique biochemical and physiological functions in very-long-chain fatty acid elongation. Plant Physiology. 167, pp. 682-692. https://doi.org/10.1104/pp.114.253195

G-fibre cell wall development in willow stems during tension wood induction

A - Papers appearing in refereed journals

Gritsch, C., Wan, Y., Mitchell, R. A. C., Shewry, P. R., Hanley, S. J. and Karp, A. 2015. G-fibre cell wall development in willow stems during tension wood induction. Journal of Experimental Botany. 66 (20), pp. 6447-6459. https://doi.org/10.1093/jxb/erv358

X-ray micro-computed tomography in willow reveals tissue patterning of reaction wood and delay in programmed cell death

A - Papers appearing in refereed journals

Brereton, N. J. B., Ahmed, F., Sykes, D., Ray, M. J., Shield, I. F., Karp, A. and Murphy, R. J. 2015. X-ray micro-computed tomography in willow reveals tissue patterning of reaction wood and delay in programmed cell death. BMC Plant Biology. 15, p. 83. https://doi.org/10.1186/s12870-015-0438-0

Regulation of endomembrane biogenesis in arabidopsis by phospatidic acid hydrolase

A - Papers appearing in refereed journals

Craddock, C. P., Adams, N., Bryant, F. M., Kurup, S. and Eastmond, P. J. 2015. Regulation of endomembrane biogenesis in arabidopsis by phospatidic acid hydrolase. Plant Signaling and Behavior. 10, p. e1065367. https://doi.org/10.1080/15592324.2015.1065367

Efficient method for rapid multiplication of clean and healthy willow clones via in vitro propagation with broad genotype applicability

A - Papers appearing in refereed journals

Palomo-Rios, E., Macalpine, W. J., Shield, I. F., Amey, J. S., Karaoglu, C., West, J., Hanley, S. J., Krygier, R., Karp, A. and Jones, H. D. 2015. Efficient method for rapid multiplication of clean and healthy willow clones via in vitro propagation with broad genotype applicability. Canadian Journal Of Forest Research. 45 (11), pp. 1662-1667. https://doi.org/10.1139/cjfr-2015-0055

Characterisation of the willow phenylalanine ammonia-lyase (Pal) gene family reveals expression differences compared with poplar

A - Papers appearing in refereed journals

De Jong, F., Hanley, S. J., Beale, M. H. and Karp, A. 2015. Characterisation of the willow phenylalanine ammonia-lyase (Pal) gene family reveals expression differences compared with poplar. Phytochemistry. 117 (September), pp. 90-97. https://doi.org/10.1016/j.phytochem.2015.06.005

High yielding biomass genotypes of willow (Salix spp.) show differences in below ground biomass allocation

A - Papers appearing in refereed journals

Cunniff, J., Purdy, S. J., Barraclough, T. J. P., Castle, M., Maddison, A. L., Jones, L. E., Shield, I. F., Gregory, A. S. and Karp, A. 2015. High yielding biomass genotypes of willow (Salix spp.) show differences in below ground biomass allocation. Biomass & Bioenergy. 80 (September), pp. 114-127. https://doi.org/10.1016/j.biombioe.2015.04.020

Sugar beet, energy beet and industrial beet

B - Book chapters etc edited externally

Mcgrath, J. M. and Townsend, B. J. 2015. Sugar beet, energy beet and industrial beet. in: Cruz, V. M. V. and Dierig, D. A. (ed.) Industrial crops. Handbook of Plant Breeding 9 Springer, New York. pp. 81-99

Seasonal carbohydrate dynamics and climate regulation of senescence in the perennial grass, Miscanthus

A - Papers appearing in refereed journals

Purdy, S. J., Cunnif, J., Maddison, A. L., Jones, L. E., Barraclough, T. J. P., Castle, M., Davey, C. L., Jones, C. M., Shield, I. F., Gallgher, J., Donnison, I. and Clifton-Brown, J. 2015. Seasonal carbohydrate dynamics and climate regulation of senescence in the perennial grass, Miscanthus. BioEnergy Research. 8 (1), pp. 28-41. https://doi.org/10.1007/s12155-014-9500-2

Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment

A - Papers appearing in refereed journals

Eastmond, P. J., Astley, H. M., Parsley, K., Aubry, S., Williams, B. P., Menard, G. N., Craddock, C. P., Nunes-Nesi, A., Fernie, A. R. and Hibberd, J. M. 2015. Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. Nature Communications. 6, p. 6659. https://doi.org/10.1038/ncomms7659

PHOSPHATIDIC ACID PHOSPHOHYDROLASE regulates phosphatidylcholine biosynthesis in Arabidopsis by phosphatidic acid-mediated activation of CTP: PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE activity

A - Papers appearing in refereed journals

Craddock, C. P., Adams, N., Bryant, F. M., Kurup, S. and Eastmond, P. J. 2015. PHOSPHATIDIC ACID PHOSPHOHYDROLASE regulates phosphatidylcholine biosynthesis in Arabidopsis by phosphatidic acid-mediated activation of CTP: PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE activity. The Plant Cell. 27, pp. 1251-1264. https://doi.org/10.1105/tpc.15.00037

Seed storage reserve analysis

A - Papers appearing in refereed journals

Erp, H., Menard, G. and Eastmond, P. J. 2014. Seed storage reserve analysis. Bio-protocol. 4 (20), p. e1263. https://doi.org/10.21769/bioprotoc.1263

Jake MacMillan: A pioneering chemist in plant biology

A - Papers appearing in refereed journals

Hedden, P. and Beale, M. H. 2014. Jake MacMillan: A pioneering chemist in plant biology. Proceedings of the National Academy of Sciences. 111 (41), pp. 14641-14642. https://doi.org/10.1073/pnas.1414365111

Understanding and manipulating plant lipid composition: metabolic engineering leads the way

A - Papers appearing in refereed journals

Napier, J. A., Haslam, R. P., Beaudoin, F. and Cahoon, E. B. 2014. Understanding and manipulating plant lipid composition: metabolic engineering leads the way. Current Opinion in Plant Biology. 19, pp. 68-75. https://doi.org/10.1016/j.pbi.2014.04.001

Oleaginous crops as integrated production platforms for food, feed, fuel and renewable industrial feedstock

A - Papers appearing in refereed journals

Beaudoin, F., Sayanova, O. V., Haslam, R. P., Bancroft, I. and Napier, J. A. 2014. Oleaginous crops as integrated production platforms for food, feed, fuel and renewable industrial feedstock. OCL - Oilseeds and fats, Crops and Lipids. 21 (6), p. D606. https://doi.org/10.1051/ocl/2014042

The yield and quality response of the energy grass Miscanthus x giganteus to fertiliser applications of nitrogen, potassium and sulphur

A - Papers appearing in refereed journals

Shield, I. F., Barraclough, T. J. P., Riche, A. B. and Yates, N. E. 2014. The yield and quality response of the energy grass Miscanthus x giganteus to fertiliser applications of nitrogen, potassium and sulphur. Biomass & Bioenergy. 68, pp. 185-194. https://doi.org/10.1016/j.biombioe.2014.06.007

Opposite variations in fumarate and malate dominate metabolic phenotypes of Arabidopsis salicylate mutants with abnormal biomass under chilling

A - Papers appearing in refereed journals

Scott, I. M., Ward, J. L., Miller, S. J. and Beale, M. H. 2014. Opposite variations in fumarate and malate dominate metabolic phenotypes of Arabidopsis salicylate mutants with abnormal biomass under chilling. Physiologia Plantarum. 152 (4), pp. 660-674. https://doi.org/10.1111/ppl.12210

An efficient high throughput metabotyping platform for screening of biomass willows

A - Papers appearing in refereed journals

Corol, D. I., Harflett, C., Beale, M. H. and Ward, J. L. 2014. An efficient high throughput metabotyping platform for screening of biomass willows. Metabolites. 4 (4), pp. 946-976. https://doi.org/10.3390/metabo4040946

Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)

A - Papers appearing in refereed journals

Berlin, S., Trybush, S. O., Fogelqvist, J., Gyllenstrand, N., Hallingback, H. R., Ahman, I., Nordh, N-E., Shield, I. F., Powers, S. J., Weih, M., Lagercrantz, U., Ronnberg-Wastljung, A-C., Karp, A. and Hanley, S. J. 2014. Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae). Tree Genetics & Genomes. 10 (6), pp. 1595-1610. https://doi.org/10.1007/s11295-014-0782-5

Photosynthesis and growth in diverse willow genotypes

A - Papers appearing in refereed journals

Andralojc, P. J., Bencze, S., Madgwick, P. J., Philippe, H., Powers, S. J., Shield, I. F., Karp, A. and Parry, M. A. J. 2014. Photosynthesis and growth in diverse willow genotypes. Food and Energy Security. 3, pp. 69-85. https://doi.org/10.1002/fes3.47

Nitrogen fertilization affects silicon concentration, cell wall composition and biofuel potential of wheat straw

A - Papers appearing in refereed journals

Murozuka, E., Laursen, K. H., Lindedam, J., Shield, I. F., Bruun, S., Magid, J., Moller, I. S. and Schjoerring, J. K. 2014. Nitrogen fertilization affects silicon concentration, cell wall composition and biofuel potential of wheat straw. Biomass & Bioenergy. 64, pp. 291-298. https://doi.org/10.1016/j.biombioe.2014.03.034

Metabolic engineering of biomass for high energy density: oilseed-like triacylglycerol yields from plant leaves

A - Papers appearing in refereed journals

Vanhercke, T., El Tahchy, A., Liu, Q., Zhou, X-R., Shrestha, P., Divi, U. K., Ral, J-P., Mansour, M. P., Nichols, P. D., James, C. N., Horn, P. J., Chapman, K. D., Beaudoin, F., Ruiz-Lopez, N., Larkin, P. J., De Feyter, R. C., Singh, S. P. and Petrie, J. R. 2014. Metabolic engineering of biomass for high energy density: oilseed-like triacylglycerol yields from plant leaves. Plant Biotechnology Journal. 12 (2), pp. 231-239. https://doi.org/10.1111/pbi.12131

Multigene engineering of triacylglycerol metabolism boosts seed oil content in Arabidopsis

A - Papers appearing in refereed journals

Van-Erp, H., Kelly, A. A., Menard, G. N. and Eastmond, P. J. 2014. Multigene engineering of triacylglycerol metabolism boosts seed oil content in Arabidopsis. Plant Physiology. 165, pp. 30-36. https://doi.org/10.1104/pp.114.236430

Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2014

C2 - Non-edited contributions to conferences

Macalpine, W. J., Shield, I. F., Walsh, L. R. E., Johnston, C., Mccracken, A. R., Gilliland, J., Wilson, H., Finnan, J., Power, R., Hartmann, H., Weitz, M., White, Robin P. and Karp, A. 2014. Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2014. Proceedings 22nd European Biomass Conference and Exhibition, Setting the Course for a Biobased Economy, Hamburg, 23-26 June 2014 . pp. 116-121

Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene

A - Papers appearing in refereed journals

Salmon, J., Ward, S. P., Hanley, S. J., Leyser, O. and Karp, A. 2014. Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene. Plant Biotechnology Journal. 12 (4), pp. 480-491. https://doi.org/10.1111/pbi.12154

Sugar beet ethanol in the EU

B - Book chapters etc edited externally

Jaggard, K. W. and Townsend, B. J. 2014. Sugar beet ethanol in the EU. in: Dixon, J., vanKeulen, H. and Langeveld, J. W. A. (ed.) Biofuel cropping systems: carbon land and food Earthscan Publications Ltd. pp. 138-157

The Arabidopsis thaliana RNA editing factor SLO2, which affects the mitochondrial electron transport chain, participates in multiple stress and hormone responses

A - Papers appearing in refereed journals

Zhu, Q., Dugardeyn, J., Zhang, C., Muhlenbock, P., Eastmond, P. J., Valcke, R., De Coninck, B., Oden, S., Karampelias, M., Cammue, B. P. A., Prinsen, E. and Van Der Straeten, D. 2014. The Arabidopsis thaliana RNA editing factor SLO2, which affects the mitochondrial electron transport chain, participates in multiple stress and hormone responses. Molecular Plant. 7 (2), pp. 290-310. https://doi.org/10.1093/mp/sst102

A genome-wide metabolomic resource for tomato fruit from Solanum pennellii

A - Papers appearing in refereed journals

Perez-Fons, L., Wells, T., Corol, D. I., Ward, J. L., Gerrish, C., Beale, M. H., Seymour, G. B., Bramley, P. M. and Fraser, P. D. 2014. A genome-wide metabolomic resource for tomato fruit from Solanum pennellii. Scientific Reports. 4, p. 3859. https://doi.org/10.1038/srep03859

Biomass oil crops: more than a pipe dream?

A - Papers appearing in refereed journals

Eastmond, P. J. 2014. Biomass oil crops: more than a pipe dream? Biofuels. 5 (2), pp. 99-101. https://doi.org/10.4155/BFS.13.77

Distribution and speciation of iron and zinc in grain of two wheat genotypes

A - Papers appearing in refereed journals

Eagling, T., Neal, A. L., McGrath, S. P., Fairweather-Tait, S., Shewry, P. R. and Zhao, F-J. 2014. Distribution and speciation of iron and zinc in grain of two wheat genotypes. Journal of Agricultural and Food Chemistry - JAFC. 62, pp. 708-716. https://doi.org/10.1021/jf403331p

Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems

A - Papers appearing in refereed journals

Wan, Y., Gritsch, C., Tryfona, T., Ray, M. J., Andongabo, A. E., Hassani-Pak, K., Jones, H. D., Dupree, P., Karp, A., Shewry, P. R. and Mitchell, R. A. C. 2014. Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems. Planta. 239, pp. 1041-1053. https://doi.org/10.1007/s00425-014-2034-1

Willows as a source of renewable fuels and diverse products

B - Book chapters etc edited externally

Karp, A. 2014. Willows as a source of renewable fuels and diverse products. in: Fenning, T. (ed.) Challenges and opportunities for the world's forests in the 21st century (Forestry Sciences 81) Springer, Dordrecht. pp. 617-641

Miscanthus combustion properties and variations with Miscanthus agronomy

A - Papers appearing in refereed journals

Baxter, X. C., Darvell, L. I., Jones, J. M., Barraclough, T. J. P., Yates, N. E. and Shield, I. F. 2014. Miscanthus combustion properties and variations with Miscanthus agronomy. Fuel. 117 (Part A), pp. 851-869. https://doi.org/10.1016/j.fuel.2013.09.003

Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows

B - Book chapters etc edited externally

Karp, A., Richter, G. M., Shield, I. F. and Hanley, S. J. 2014. Genetics, genomics and crop modelling: integrative approaches to the improvement of biomass willows. in: McCann, M. C. (ed.) Plants and bioenergy. Advances in Plant Biology, Vol 4 Springer, New York. pp. 107-130

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.)

A - Papers appearing in refereed journals

Hanley, S. J. and Karp, A. 2014. Genetic strategies for dissecting complex traits in biomass willows (Salix spp.). Tree Physiology. 34 (11), pp. 1167-1180. https://doi.org/10.1093/treephys/tpt089

Insights into nitrogen allocation and recycling from nitrogen elemental analysis and 15N isotope labelling in 14 genotypes of willow

A - Papers appearing in refereed journals

Brereton, N. J. B., Pitre, F. E., Shield, I. F., Hanley, S. J., Ray, M. J., Murphy, R. J. and Karp, A. 2014. Insights into nitrogen allocation and recycling from nitrogen elemental analysis and 15N isotope labelling in 14 genotypes of willow. Tree Physiology. 34 (11), pp. 1252-1262. https://doi.org/10.1093/treephys/tpt081

Near infrared spectroscopy (NIRS) for screening condensed tannins in a willow germplasm collection

C2 - Non-edited contributions to conferences

Klongsiriwet, C., Karp, A., Hanley, S. J., Barnes, R., Falchero, L. and Mueller-Harvey, I. 2013. Near infrared spectroscopy (NIRS) for screening condensed tannins in a willow germplasm collection. Thieme. https://doi.org/10.1055/s-0033-1352230

The sugar beet genome sequence - new traits and elite varieties

G - Articles in popular magazines and other technical publications

Townsend, B. J. 2013. The sugar beet genome sequence - new traits and elite varieties. British Sugar Beet Review. 81(2), pp. 46-48.

Metabolomics reveals hemiterpenoids as new players in the carbon-nitrogen economy

B - Book chapters etc edited externally

Beale, M. H. and Ward, J. L. 2013. Metabolomics reveals hemiterpenoids as new players in the carbon-nitrogen economy. in: Gang, D. R. (ed.) 50 Years of phytochemistry research (Advances in Phytochemistry 43) Springer, Cham. pp. 1-20

Systemic defense priming by Pseudomonas putida KT2440 in maize depends on benzoxazinoid exudation from the roots

A - Papers appearing in refereed journals

Neal, A. L. and Ton, J. 2013. Systemic defense priming by Pseudomonas putida KT2440 in maize depends on benzoxazinoid exudation from the roots. Plant Signaling and Behavior. 8, p. e22655. https://doi.org/10.4161/psb.22655

Mycorrhiza-induced resistance: more than the sum of its parts?

A - Papers appearing in refereed journals

Cameron, D. D., Neal, A. L., Van Wees, S. C. M. and Ton, J. 2013. Mycorrhiza-induced resistance: more than the sum of its parts? Trends in Plant Science. 18 (10), pp. 539-545. https://doi.org/10.1016/j.tplants.2013.06.004

Merits of random forests emerge in evaluation of chemometric classifiers by external validation

A - Papers appearing in refereed journals

Scott, I. M., Lin, W., Liakata, M., Wood, J. E., Vermeer, C. P., Allaway, D., Ward, J. L., Draper, J., Beale, M. H., Corol, D. I., Baker, J. M. and King, R. D. 2013. Merits of random forests emerge in evaluation of chemometric classifiers by external validation. Analytica Chimica Acta. 801, pp. 22-33. https://doi.org/10.1016/j.aca.2013.09.027

bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3

A - Papers appearing in refereed journals

Mendes, A., Kelly, A. A., Van-Erp, H., Shaw, E., Powers, S. J., Kurup, S. and Eastmond, P. J. 2013. bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3. The Plant Cell. 25, pp. 3104-3116. https://doi.org/10.1105/tpc.113.116343

Modeling long-term yield trends of Miscanthus x giganteus using experimental data from across Europe

A - Papers appearing in refereed journals

Lesur, C., Jeuffroy, M-H., Makowski, D., Riche, A. B., Shield, I. F., Yates, N. E., Fritz, M., Formowitz, B., Grunert, M., Jorgensen, U., Laerke, P. E. and Loyce, C. 2013. Modeling long-term yield trends of Miscanthus x giganteus using experimental data from across Europe. Field Crops Research. 149, pp. 252-260. https://doi.org/10.1016/j.fcr.2013.05.004

The influence of harvest and storage on the properties of and fast pyrolysis products from Miscanthus giganteus

A - Papers appearing in refereed journals

Greenhalf, C. E., Nowakowski, D. J., Yates, N. E., Shield, I. F. and Bridgwater, A. V. 2013. The influence of harvest and storage on the properties of and fast pyrolysis products from Miscanthus giganteus. Biomass & Bioenergy. 56, pp. 247-259. https://doi.org/10.1016/j.biombioe.2013.05.007

Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture - insights from genomics

A - Papers appearing in refereed journals

Studholme, D. J., Harris, B., Le Cocq, K., Winsbury, R., Perera, V., Ryder, L., Ward, J. L., Beale, M. H., Thornton, C. R. and Grant, M. 2013. Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture - insights from genomics. Frontiers in Plant Science. 4, p. 258 (13pp). https://doi.org/10.3389/fpls.2013.00258

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

A - Papers appearing in refereed journals

Beste, D. J. V., Noh, K., Niedenfuhr, S., Mendum, T. A., Hawkins, N. D., Ward, J. L., Beale, M. H., Wiechert, W. and Mcfadden, J. 2013. 13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis. Chemistry and Biology. 20 (8), pp. 1012-1021. https://doi.org/10.1016/j.chembiol.2013.06.012

The SUGAR-DEPENDENT1 lipase limits triacyglycerol accumulation in vegetative tissues of Arabidopsis

A - Papers appearing in refereed journals

Kelly, A. A., Van-Erp, H., Quettier, A-L., Shaw, E., Menard, G. N., Kurup, S. and Eastmond, P. J. 2013. The SUGAR-DEPENDENT1 lipase limits triacyglycerol accumulation in vegetative tissues of Arabidopsis. Plant Physiology. 162, pp. 1282-1289. https://doi.org/10.1104/pp.113.219840

Using Arabidopsis to study shoot branching in biomass willow

A - Papers appearing in refereed journals

Ward, S. P., Salmon, J., Hanley, S. J., Karp, A. and Leyser, O. 2013. Using Arabidopsis to study shoot branching in biomass willow. Plant Physiology. 162 (June), pp. 800-811. https://doi.org/10.1104/pp.113.218461

Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids

A - Papers appearing in refereed journals

Smith, M. A., Dauk, M., Ramadan, H., Yang, H., Seamons, L. E., Haslam, R. P., Beaudoin, F., Ramirez-Erosa, I. and Forseille, L. 2013. Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids. Plant Physiology. 161, pp. 81-96. https://doi.org/10.1104/pp.112.202325

Whole grains, type 2 diabetes, coronary heart disease and hypertension: links to the aleurone preferred over indigestible fiber

A - Papers appearing in refereed journals

Lillioja, S., Neal, A. L., Tapsell, L. and Jacobs, D. R. Jr 2013. Whole grains, type 2 diabetes, coronary heart disease and hypertension: links to the aleurone preferred over indigestible fiber. Biofactors. 39 (3), pp. 242-258. https://doi.org/10.1002/biof.1077

A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow

A - Papers appearing in refereed journals

Cerasuolo, M., Richter, G. M., Cunniff, J., Purdy, S., Shield, I. F. and Karp, A. 2013. A pseudo-3D model to optimise the target traits of light interception in short-rotation coppice willow. Agricultural and Forest Meteorology. 173, pp. 127-138. https://doi.org/10.1016/j.agrformet.2012.11.022

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

A - Papers appearing in refereed journals

Bernillon, S., Biais, B., Deborde, C., Maucourt, M., Cabasson, C., Gibon, Y., Hansen, T. H., Husted, S., De Vos, R. C. H., Mumm, R., Jonker, H., Ward, J. L., Miller, S. J., Baker, J. M., Burger, J., Tadmor, Y., Beale, M. H., Schjoerring, J. K., Schaffer, A. A., Rolin, D., Hall, R. D. and Moing, A. 2013. Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment. Metabolomics. 9, pp. 57-77. https://doi.org/10.1007/s11306-012-0429-1

Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain

A - Papers appearing in refereed journals

Neal, A. L., Geraki, K., Borg, S., Quinn, P., Mosselmans, J. F., Brinch-Pedersen, H. and Shewry, P. R. 2013. Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain. Journal Of Biological Inorganic Chemistry. 18, pp. 557-570. https://doi.org/10.1007/s00775-013-1000-x

Exploring the metabolome of cereal infecting fusaria

C2 - Non-edited contributions to conferences

Hammond-Kosack, K. E., Lowe, R. G. T., Canning, G., Urban, M., Beale, M. H. and Ward, J. L. 2013. Exploring the metabolome of cereal infecting fusaria. Abstracts 27th Fungal Genetics Conference, Asilomar, 12-17 March 2013 . pp. 21

Suppression of the SUGAR-DEPENDENT1 triacylglycerol lipase family during seed development enhances oil yield in oilseed rape (Brassica napus L.)

A - Papers appearing in refereed journals

Kelly, A. A., Shaw, E., Powers, S. J., Kurup, S. and Eastmond, P. J. 2013. Suppression of the SUGAR-DEPENDENT1 triacylglycerol lipase family during seed development enhances oil yield in oilseed rape (Brassica napus L.). Plant Biotechnology Journal. 11 (3), pp. 355-361. https://doi.org/10.1111/pbi.12021

The modification of plant oil composition via metabolic engineering - better nutrition by design

A - Papers appearing in refereed journals

Haslam, R. P., Ruiz-Lopez, N., Eastmond, P. J., Moloney, M., Sayanova, O. V. and Napier, J. A. 2013. The modification of plant oil composition via metabolic engineering - better nutrition by design. Plant Biotechnology Journal. 11 (2), pp. 157-168. https://doi.org/10.1111/pbi.12012

Molecular characterization of the fatty alcohol oxidation pathway for wax-ester mobilization in germinated jojoba seeds

A - Papers appearing in refereed journals

Rajangam, A. S., Gidda, S. K., Craddock, C., Mullen, R. T., Dyer, J. M. and Eastmond, P. J. 2013. Molecular characterization of the fatty alcohol oxidation pathway for wax-ester mobilization in germinated jojoba seeds. Plant Physiology. 161, pp. 72-80. https://doi.org/10.1104/pp.112.208264

Aphid-induced accumulation of trehalose in Arabidopsis thaliana is systemic and dependent upon aphid density

A - Papers appearing in refereed journals

Hodge, S., Ward, J. L., Beale, M. H., Bennett, M., Mansfield, J. W. and Powell, G. 2013. Aphid-induced accumulation of trehalose in Arabidopsis thaliana is systemic and dependent upon aphid density. Planta. 237, pp. 1057-1064. https://doi.org/10.1007/s00425-012-1826-4

A SNaPshot assay for the rapid and simple detection of known point mutations conferring resistance to ACCase-inhibiting herbicides in Lolium spp.

A - Papers appearing in refereed journals

Reverte, R. A., Hanley, S. J., Kaundun, S. S., Karp, A. and Moss, S. R. 2013. A SNaPshot assay for the rapid and simple detection of known point mutations conferring resistance to ACCase-inhibiting herbicides in Lolium spp. Weed Research. 53 (1), pp. 12-20. https://doi.org/10.1111/wre.12002

Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere

A - Papers appearing in refereed journals

Neal, A. L., Ahmad, S., Gordon-Weeks, R. and Ton, J. 2012. Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLOS ONE. 7, p. e35498 (10pp). https://doi.org/10.1371/journal.pone.0035498

Can the soil bacterium Cupriavidus necator sense ZnO nanomaterials and aqueous Zn2+ differentially?

A - Papers appearing in refereed journals

Neal, A. L., Kabengi, N., Grider, A. and Bertsch, P. M. 2012. Can the soil bacterium Cupriavidus necator sense ZnO nanomaterials and aqueous Zn2+ differentially? Nanotoxicology. 6, pp. 371-380. https://doi.org/10.3109/17435390.2011.579633

High levels of genetic diversity in Salix viminalis of the Czech Republic as revealed by microsatellite markers

A - Papers appearing in refereed journals

Trybush, S. O., Jahodova, S., Cizkova, L., Karp, A. and Hanley, S. J. 2012. High levels of genetic diversity in Salix viminalis of the Czech Republic as revealed by microsatellite markers. BioEnergy Research. 5 (4), pp. 969-977. https://doi.org/10.1007/s12155-012-9212-4

The yield response of the energy crops switchgrass and reed canary grass to fertiliser applications when grown on a low productivity sandy soil

A - Papers appearing in refereed journals

Shield, I. F., Barraclough, T. J. P., Riche, A. B. and Yates, N. E. 2012. The yield response of the energy crops switchgrass and reed canary grass to fertiliser applications when grown on a low productivity sandy soil. Biomass & Bioenergy. 42, pp. 86-96. https://doi.org/10.1016/j.biombioe.2012.03.017

Reaction wood - a key cause of variation in cell wall recalcitrance in willow

A - Papers appearing in refereed journals

Brereton, N. J. B., Ray, M. J., Shield, I. F., Martin, P., Karp, A. and Murphy, R. J. 2012. Reaction wood - a key cause of variation in cell wall recalcitrance in willow. Biotechnology for Biofuels. 2, p. 83. https://doi.org/10.1186/1754-6834-5-83

Variation in cell wall composition and accessibility in relation to biofuel potential of short rotation coppice willows

A - Papers appearing in refereed journals

Ray, M. J., Brereton, N. J. B., Shield, I. F., Karp, A. and Murphy, R. J. 2012. Variation in cell wall composition and accessibility in relation to biofuel potential of short rotation coppice willows. BioEnergy Research. 5, pp. 685-698. https://doi.org/10.1007/s12155-011-9177-8

Thermochemical characterisation of straws and high yielding perennial grasses

A - Papers appearing in refereed journals

Greenhalf, C. E., Nowakowski, D. J., Bridgwater, A. V., Titiloye, J., Yates, N. E., Riche, A. B. and Shield, I. F. 2012. Thermochemical characterisation of straws and high yielding perennial grasses. Industrial Crops and Products. 36, pp. 449-459. https://doi.org/10.1016/j.indcrop.2011.10.025

Effect of nitrogen fertiliser application on cell wall composition in switchgrass and reed canary grass

A - Papers appearing in refereed journals

Allison, G. G., Morris, C., Lister, S. J., Barraclough, T. J. P., Yates, N. E., Shield, I. F. and Donnison, I. S. 2012. Effect of nitrogen fertiliser application on cell wall composition in switchgrass and reed canary grass. Biomass & Bioenergy. 40, pp. 19-26. https://doi.org/10.1016/j.biombioe.2012.01.034

A single residue change leads to a hydroxylated product from the class II diterpene cyclization catalyzed by abietadiene synthase

A - Papers appearing in refereed journals

Criswell, J., Potter, K., Shephard, F., Beale, M. H. and Peters, R. J. 2012. A single residue change leads to a hydroxylated product from the class II diterpene cyclization catalyzed by abietadiene synthase. Organic Letters. 14, pp. 5828-5831. https://doi.org/10.1021/ol3026022

SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism

A - Papers appearing in refereed journals

Zhu, Q., Dugardeyn, J., Zhang, C., Takenaka, M., Kuhn, K., Craddock, C., Smalle, J., Karampelias, M., Denecke, J., Peters, J., Gerats, T., Brennicke, A., Eastmond, P. J., Meyer, E. H. and Van Der Straeten, D. 2012. SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism. The Plant Journal. 71 (5), pp. 836-849. https://doi.org/10.1111/j.1365-313X.2012.05036.x

A common signaling process that promotes mycorrhizal and oomycete colonization of plants

A - Papers appearing in refereed journals

Wang, E., Schornack, S., Marsh, J. F., Gobbato, E., Schwessinger, B., Eastmond, P. J., Schultze, M., Kamoun, S. and Oldroyd, G. E. D. 2012. A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Current Biology. 22 (23), pp. 2242-2246. https://doi.org/10.1016/j.cub.2012.09.043

Unexpected hemiterpenoids in Arabidopsis, revealed by metabolomic fingerprinting, give new insights into C/N metabolic balancing

C2 - Non-edited contributions to conferences

Ward, J. L., Baker, J. M., Llewellyn, A. M., Hawkins, N. D. and Beale, M. H. 2012. Unexpected hemiterpenoids in Arabidopsis, revealed by metabolomic fingerprinting, give new insights into C/N metabolic balancing. Taylor & Francis.

Seed storage oil catabolism: a story of give and take

A - Papers appearing in refereed journals

Theodoulou, F. L. and Eastmond, P. J. 2012. Seed storage oil catabolism: a story of give and take. Current Opinion in Plant Biology. 15 (3), pp. 322-328. https://doi.org/10.1016/j.pbi.2012.03.017

Effects of genotype and environment on the contents of betaine, choline and trigonelline in cereal grains

A - Papers appearing in refereed journals

Corol, D. I., Ravel, C., Raksegi, M., Bedo, Z., Charmet, G., Beale, M. H., Shewry, P. R. and Ward, J. L. 2012. Effects of genotype and environment on the contents of betaine, choline and trigonelline in cereal grains. Journal of Agricultural and Food Chemistry - JAFC. 60, pp. 5471-5481. https://doi.org/10.1021/jf3008794

Realising the potential of plant metabolomics

C2 - Non-edited contributions to conferences

Beale, M. H. and Ward, J. L. 2012. Realising the potential of plant metabolomics.

Population genetics of Tuberolachnus salignus, an obligate parthenogenetic aphid

A - Papers appearing in refereed journals

Aradottir, G. I., Hanley, S. J., Collins, C. M., Dawson, K. J., Karp, A., Leather, S. R., Shield, I. F. and Harrington, R. 2012. Population genetics of Tuberolachnus salignus, an obligate parthenogenetic aphid. Agricultural and Forest Entomology. 14 (2), pp. 197-205. https://doi.org/10.1111/j.1461-9563.2011.00559.x

Study of Miscanthus x giganteus ash composition - variation with agronomy and assessment method

A - Papers appearing in refereed journals

Baxter, X. C., Darvell, L. I., Jones, J. M., Barraclough, T. J. P., Yates, N. E. and Shield, I. F. 2012. Study of Miscanthus x giganteus ash composition - variation with agronomy and assessment method. Fuel. 95, pp. 50-62. https://doi.org/10.1016/j.fuel.2011.12.025

2-Carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase: evidence for a wider role in plant Rubisco regulation

A - Papers appearing in refereed journals

Andralojc, P. J., Madgwick, P. J., Tao, Y., Keys, A. J., Ward, J. L., Beale, M. H., Loveland, J. E., Jackson, P. J., Willis, A. C., Gutteridge, S. and Parry, M. A. J. 2012. 2-Carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase: evidence for a wider role in plant Rubisco regulation. Biochemical Journal. 442 (3), pp. 733-742. https://doi.org/10.1042/BJ20111443

Tissue preparation using Arabidopsis

B - Book chapters etc edited externally

Llewellyn, A. M., Lewis, J., Miller, S. J., Corol, D. I., Beale, M. H. and Ward, J. L. 2012. Tissue preparation using Arabidopsis. in: Hall, R. D. and Hardy, N. W. (ed.) Plant metabolomics: methods and protocols (Methods in Molecular Biology, vol. 860 Springer, New York. pp. 65-81

Combined NMR and flow injection ESI-MS for Brassicaceae metabolomics

B - Book chapters etc edited externally

Baker, J. M., Ward, J. L. and Beale, M. H. 2012. Combined NMR and flow injection ESI-MS for Brassicaceae metabolomics. in: Hall, R. D. and Hardy, N. W. (ed.) Plant metabolomics: methods and protocols (Methods in Molecular Biology, vol. 860) Springer, New York. pp. 177-191

Seed to near market variety: the BEGIN willow breeding pipeline 2003-2010 and beyond

C1 - Edited contributions to conferences/learned societies

Macalpine, W. J., Shield, I. F. and Karp, A. 2011. Seed to near market variety: the BEGIN willow breeding pipeline 2003-2010 and beyond. Proceedings Bioten Conference on Biomass, Bioenergy and Biofuels, Birmingham, 21-23 September 2010 . CPL Scientific Publishing, Newbury. pp. 94-104

Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2011

C1 - Edited contributions to conferences/learned societies

Macalpine, W. J., Shield, I. F., Walsh, L. R. E., Mccracken, A. R., Wilson, H., Gilliland, J., Hughes, A. R., Cunniff, J. and Karp, A. 2011. Rothamsted Research willow (Salix spp.) breeding programme: multi-site yield trial results 2011. Biomass and Energy Crops IV. Aspects of Applied Biology 112 . pp. 263-270

Hypes, hurdles and hopes: Energy and biofuels from biomass

G - Articles in popular magazines and other technical publications

Karp, A. 2011. Hypes, hurdles and hopes: Energy and biofuels from biomass. The Biochemist. 33 (2), pp. 30-33. https://doi.org/10.1042/BIO03302030

The overwinter changes in the above and below ground biomass of miscanthus (Miscanthus x giganteus), switchgrass (Panicum virgatum) and reed canary grass (Phalaris arundinacea)

C1 - Edited contributions to conferences/learned societies

Barraclough, T. J. P., Yates, N. E. and Shield, I. F. 2011. The overwinter changes in the above and below ground biomass of miscanthus (Miscanthus x giganteus), switchgrass (Panicum virgatum) and reed canary grass (Phalaris arundinacea). Bridgwater, A. V. (ed.) Proceedings Bioten Conference on Biomass, Bioenergy and Biofuels, Birmingham, 21-23 September 2010 . CPL Press, Newbury.

The BBSRC Sustainable Bioenergy Centre (BSBEC): perennial bioenergy crops programme; optimising biomass from Miscanthus

C1 - Edited contributions to conferences/learned societies

Purdy, S., Clifton-Brown, J., Jones, L., Maddison, A., Davey, C., Cunniff, J., Shield, I. F., Barraclough, T. J. P., Castle, M., Donnison, I. and Karp, A. 2011. The BBSRC Sustainable Bioenergy Centre (BSBEC): perennial bioenergy crops programme; optimising biomass from Miscanthus. Biomass and bioenergy IV. Aspects of Applied Biology 112 . pp. 11-19

Comparative trials of elite Swedish and UK biomass willow varieties 2001-2010

C1 - Edited contributions to conferences/learned societies

Lindegaard, K. N., Carter, M. M., Mccracken, A., Shield, I. F., Macalpine, W. J., Hinton Jones, M., Valentine, J. and Larsson, S. 2011. Comparative trials of elite Swedish and UK biomass willow varieties 2001-2010. Biomass and bioenergy crops IV. Aspects of Applied Biology 112 . pp. 57-66

The effects of a plant defence priming compound, beta-aminobutyric acid, on multitrophic interactions with an insect herbivore and a hymenopterous parasitoid

A - Papers appearing in refereed journals

Hodge, S., Ward, J. L., Galster, A. M., Beale, M. H. and Powell, G. 2011. The effects of a plant defence priming compound, beta-aminobutyric acid, on multitrophic interactions with an insect herbivore and a hymenopterous parasitoid. BioControl. 56, pp. 699-711. https://doi.org/10.1007/s10526-011-9344-z

Condensed tannins in willow (Salix spp.): a first step to evaluate novel feeds for nutritionally improved animal products

C1 - Edited contributions to conferences/learned societies

Falchero, L., Brown, R. H., Mueller-Harvey, I., Hanley, S. J., Shield, I. F. and Karp, A. 2011. Condensed tannins in willow (Salix spp.): a first step to evaluate novel feeds for nutritionally improved animal products. Hopkins, A., Krautzer, B. and Potsch, E. M. (ed.) Proceedings 16th Symposium of the European Grassland Federation: Grassland Farming and Land Management Systems in Mountainous Regions, Gumpenstein, 29-31 August 2011 . Wallig Ennstaler Druckerei und Verlag, Grobming. pp. 434-436

The structural diversity of condensed tannins in willows (salix spp.): a first screening to improve the nutritional quality of ruminant products

C2 - Non-edited contributions to conferences

Falchero, L., Brown, R., Hanley, S. J., Karp, A., Shield, I. F. and Mueller-Harvey, I. 2011. The structural diversity of condensed tannins in willows (salix spp.): a first screening to improve the nutritional quality of ruminant products.

BSBEC-BioMASS - selecting traits to optimise biomass yield of SRC willow

A - Papers appearing in refereed journals

Cunniff, J., Shield, I. F., Barraclough, T. J. P., Castle, M., Hanley, S. J., Andralojc, P. J., Richter, G. M., Cerasuolo, M., Purdy, S., Clifton-Brown, J., Maddison, A., Jones, L., Donnison, I. and Karp, A. 2011. BSBEC-BioMASS - selecting traits to optimise biomass yield of SRC willow. Aspects of Applied Biology. 112.

Biomass and energy crops IV (Aspects of Applied Biology 112)

E - Books edited/written by staff member, alone/with others

Booth, E., Halford, N. G., Shield, I. F., Taylor, G. and Turley, D. Voigt, T. (ed.) 2011. Biomass and energy crops IV (Aspects of Applied Biology 112). Association of Applied Biologists (AAB) Wellesbourne Warwick .

LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies

A - Papers appearing in refereed journals

Capuano, F., Bond, N. J., Gatto, L., Beaudoin, F., Napier, J. A., Benvenuto, E., Lilley, K. S. and Baschieri, S. 2011. LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies. Analytical Chemistry. 83, pp. 9267-9272. https://doi.org/10.1021/ac201733m

Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow

A - Papers appearing in refereed journals

Ward, J. L., Baker, J. M., Llewellyn, A. M., Hawkins, N. D. and Beale, M. H. 2011. Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow. Proceedings of the National Academy of Sciences. 108, pp. 10762-10767. https://doi.org/10.1073/pnas.1018875108

Meeting the challenge of food and energy security

A - Papers appearing in refereed journals

Karp, A. and Richter, G. M. 2011. Meeting the challenge of food and energy security. Journal of Experimental Botany. 62 (10), pp. 3263-3271. https://doi.org/10.1093/jxb/err099

Investigation of tension wood formation and 2,6-dichlorbenzonitrile application in short rotation coppice willow composition and enzymatic saccharification

A - Papers appearing in refereed journals

Brereton, N. J. B., Pitre, F. E., Ray, M. J., Karp, A. and Murphy, R. J. 2011. Investigation of tension wood formation and 2,6-dichlorbenzonitrile application in short rotation coppice willow composition and enzymatic saccharification. Biotechnology for Biofuels. 4, p. 13 (9pp). https://doi.org/10.1186/1754-6834-4-13

Learning how to deal with values, frames and governance in sustainability appraisal

A - Papers appearing in refereed journals

Bond, A. J., Dockerty, T., Lovett, A., Riche, A. B., Haughton, A. J., Bohan, D. A., Sage, R. B., Shield, I. F., Finch, J. W., Turner, M. M. and Karp, A. 2011. Learning how to deal with values, frames and governance in sustainability appraisal. Regional studies. 45, pp. 1157-1170. https://doi.org/10.1080/00343404.2010.485181

13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation

A - Papers appearing in refereed journals

Beste, D. J. V., Bonde, B., Hawkins, N. D., Ward, J. L., Beale, M. H., Noack, S., Noh, K., Kruger, N. J., Ratcliffe, R. G. and Mcfadden, J. 2011. 13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLOS Pathogens. 7, p. e1002091 (18pp). https://doi.org/10.1371/journal.ppat.1002091

Genetic mapping of rust resistance loci in biomass willow

A - Papers appearing in refereed journals

Hanley, S. J., Pei, M. H., Powers, S. J., Ruiz, C., Mallott, M. D., Barker, J. H. A. and Karp, A. 2011. Genetic mapping of rust resistance loci in biomass willow. Tree Genetics & Genomes. 7 (3), pp. 597-608. https://doi.org/10.1007/s11295-010-0359-x

Effects of canopy architecture traits on willow crop growth

C1 - Edited contributions to conferences/learned societies

Cerasuolo, M., Richter, G. M., Cunniff, J., Shield, I. F., Barraclough, T. J. P., Castle, M. and Karp, A. 2011. Effects of canopy architecture traits on willow crop growth. Systems Approaches to Crop Improvement. Aspects of Applied Biology 107 . pp. 63-69

The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus

A - Papers appearing in refereed journals

Smooker, A. M., Wells, R., Morgan, C., Beaudoin, F., Cho, K., Fraser, F. and Bancroft, I. 2011. The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus. Theoretical and Applied Genetics. 122, pp. 1075-1090. https://doi.org/10.1007/s00122-010-1512-5

Genetic improvement of willow for bioenergy and biofuels

A - Papers appearing in refereed journals

Karp, A., Hanley, S. J., Trybush, S. O., Macalpine, W. J., Pei, M. H. and Shield, I. F. 2011. Genetic improvement of willow for bioenergy and biofuels. Journal of Integrative Plant Biology. 53 (2), pp. 151-165. https://doi.org/10.1111/j.1744-7909.2010.01015.x

Variation in Miscanthus chemical composition and implications for conversion by pyrolysis and thermo-chemical bio-refining for fuels and chemicals

A - Papers appearing in refereed journals

Hodgson, E. M., Nowakowski, D. J., Shield, I. F., Riche, A. B., Bridgwater, A. V., Clifton-Brown, J. C. and Donnison, I. S. 2011. Variation in Miscanthus chemical composition and implications for conversion by pyrolysis and thermo-chemical bio-refining for fuels and chemicals. Bioresource Technology. 102, pp. 3411-3418. https://doi.org/10.1016/j.biortech.2010.10.017

Metabolomics of Arabidopsis thaliana

B - Book chapters etc edited externally

Beale, M. H. and Sussman, M. R. 2011. Metabolomics of Arabidopsis thaliana. in: Hall, R. D. (ed.) Biology of plant metabolomics (Annual Plant Reviews Vol. 43) Wiley-Blackwell Chichester, Sussex. pp. 157-180

Characterization of a glutenin-specific serine proteinase of Sunn bug Eurygaster integricepts Put.

A - Papers appearing in refereed journals

Konarev, A. V., Beaudoin, F., Marsh, J., Vilkova, N. A., Nefedova, L. I., Sivri, D., Koksel, H., Shewry, P. R. and Lovegrove, A. 2011. Characterization of a glutenin-specific serine proteinase of Sunn bug Eurygaster integricepts Put. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 2462-2470. https://doi.org/10.1021/jf103867g

Energy crops: introduction

B - Book chapters etc edited externally

Karp, A. and Halford, N. G. 2011. Energy crops: introduction. in: Karp, A. and Halford, N. G. (ed.) Energy crops Royal Society of Chemistry (RSC), Cambridge. pp. 1-12

Energy crops (RSC Energy and Environment Series No 3)

E - Books edited/written by staff member, alone/with others

Halford, N. G. and Karp, A. 2011. Energy crops (RSC Energy and Environment Series No 3). Royal Society of Chemistry (RSC), Cambridge.

Characterisation and inheritance of nuclear microsatellite loci for use in population studies of the allotetraploid Salix alba-Salix fragilis complex

A - Papers appearing in refereed journals

King, R. A., Harris, S. L., Karp, A. and Barker, J. H. A. 2010. Characterisation and inheritance of nuclear microsatellite loci for use in population studies of the allotetraploid Salix alba-Salix fragilis complex. Tree Genetics and Genomes. 6, pp. 247-258. https://doi.org/10.1007/s11295-009-0245-6

Nitrogen requirements of biomass crops

C1 - Edited contributions to conferences/learned societies

Riche, A. B., Goulding, K. W. T., Yates, N. E., Shield, I. F. and Christian, D. G. 2010. Nitrogen requirements of biomass crops. Water and Nitrogen Use Eficiency in Plants and Crops. Aspects of Applied Biology 105 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 83-88

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

Willow has advanced as an energy crop but is the UK reaping the benefits?

G - Articles in popular magazines and other technical publications

Karp, A., Macalpine, W. J. and Shield, I. F. 2010. Willow has advanced as an energy crop but is the UK reaping the benefits? Journal of the Royal Agricultural Society of England. 171, pp. 55-61.

A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp

A - Papers appearing in refereed journals

Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions - MPMI. 23 (12), pp. 1605-1618. https://doi.org/10.1094/MPMI-04-10-0092

Estimating root biomass in Salix viminalis x Salix schwerinii cultivar 'Olof' using the electrical capacitance method

A - Papers appearing in refereed journals

Pitre, F. E., Brereton, N. J. B., Audoire, S., Richter, G. M., Shield, I. F. and Karp, A. 2010. Estimating root biomass in Salix viminalis x Salix schwerinii cultivar 'Olof' using the electrical capacitance method. Plant Biosystems. 144 (2), pp. 479-483. https://doi.org/10.1080/11263501003732092

Numerical and analytical study to estimate leaf distribution on the radiation interception in willow crops

C2 - Non-edited contributions to conferences

Cerasuolo, M., Shield, I. F. and Richter, G. M. 2010. Numerical and analytical study to estimate leaf distribution on the radiation interception in willow crops. Abstracts Agro2010, the 11th ESA Congress, Montpellier, 29 August - 3 September 2010 . pp. 105-106

Mendelian inheritance of rust resistance to Melampsora larici-epitea in crosses between Salix sachalinensis and S. viminalis

A - Papers appearing in refereed journals

Pei, M. H., Ruiz, C., Shield, I. F., Macalpine, W. J., Lindegaard, K., Bayon, C. and Karp, A. 2010. Mendelian inheritance of rust resistance to Melampsora larici-epitea in crosses between Salix sachalinensis and S. viminalis. Plant Pathology. 59 (5), pp. 862-872. https://doi.org/10.1111/j.1365-3059.2010.02317.x

Functional analysis of folate polyglutamylation and its essential role in plant metabolism and development

A - Papers appearing in refereed journals

Mehrshahi, P., Gonzalez-Jorge, S., Akhtar, T. A., Ward, J. L., Santoyo-Castelazo, A., Marcus, S. E., Lara-Nunez, A., Ravanel, S., Hawkins, N. D., Beale, M. H., Barrett, D. A., Knox, J. P., Gregory, J. F. Iii, Hanson, A. D., Bennett, M. J. and Dellapenna, D. 2010. Functional analysis of folate polyglutamylation and its essential role in plant metabolism and development. The Plant Journal. 64, pp. 267-279. https://doi.org/10.1111/j.1365-313X.2010.04336.x

QTL mapping of enzymatic saccharification in short rotation coppice willow and its independence from biomass yield

A - Papers appearing in refereed journals

Brereton, N. J. B., Pitre, F. E., Hanley, S. J., Ray, M. J., Karp, A. and Murphy, R. J. 2010. QTL mapping of enzymatic saccharification in short rotation coppice willow and its independence from biomass yield. BioEnergy Research. 3 (3), pp. 251-261. https://doi.org/10.1007/s12155-010-9077-3

The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato

A - Papers appearing in refereed journals

Ward, J. L., Forcat, S., Beckmann, M., Bennett, M., Miller, S. J., Baker, J. M., Hawkins, N. D., Vermeer, C. P., Lu, C., Lin, W., Truman, W. M., Beale, M. H., Draper, J., Mansfield, J. W. and Grant, M. 2010. The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato. The Plant Journal. 63 (3), pp. 443-457. https://doi.org/10.1111/j.1365-313X.2010.04254.x

The sunflower plastidial omega3-fatty acid desaturase (Ha FAD7) contains the signalling determinants required for targeting to, and retention in, the endoplasmic reticulum membrane in yeast but requires co-expressed ferredoxin for activity

A - Papers appearing in refereed journals

Venegas-Caleron, M., Beaudoin, F., Garces, R., Napier, J. A. and Martinez-Force, E. 2010. The sunflower plastidial omega3-fatty acid desaturase (Ha FAD7) contains the signalling determinants required for targeting to, and retention in, the endoplasmic reticulum membrane in yeast but requires co-expressed ferredoxin for activity. Phytochemistry. 71, pp. 1050-1058. https://doi.org/10.1016/j.phytochem.2010.04.017

Enhancement of plant metabolite fingerprinting by machine learning

A - Papers appearing in refereed journals

Scott, I. M., Vermeer, C. P., Liakata, M., Corol, D. I., Ward, J. L., Lin, W., Johnson, H. E., Whitehead, L., Kular, B., Baker, J. M., Walsh, S., Dave, A., Larson, T. R., Graham, I. A., Wang, T. L., King, R. D., Draper, J. and Beale, M. H. 2010. Enhancement of plant metabolite fingerprinting by machine learning. Plant Physiology. 153, pp. 1506-1520. https://doi.org/10.1104/pp.109.150524

Miscanthus as a feedstock for fast-pyrolysis: does agronomic treatment affect quality?

A - Papers appearing in refereed journals

Hodgson, E. M., Fahmi, R., Yates, N. E., Barraclough, T. J. P., Shield, I. F., Allison, G., Bridgwater, A. V. and Donnison, I. S. 2010. Miscanthus as a feedstock for fast-pyrolysis: does agronomic treatment affect quality? Bioresource Technology. 101 (15), pp. 6185-6191. https://doi.org/10.1016/j.biortech.2010.03.024

The environmental impacts of biomass crops: use by birds of miscanthus in summer and winter in southwestern England

A - Papers appearing in refereed journals

Sage, R., Cunningham, M., Haughton, A. J., Mallott, M. D., Bohan, D. A., Riche, A. B. and Karp, A. 2010. The environmental impacts of biomass crops: use by birds of miscanthus in summer and winter in southwestern England. Ibis. 152 (3), pp. 487-499. https://doi.org/10.1111/j.1474-919X.2010.01027.x

Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis

A - Papers appearing in refereed journals

Roudier, F., Gissot, L., Beaudoin, F., Haslam, R. P., Michaelson, L. V., Marion, J., Molino, D., Lima, A., Bach, L., Morin, H., Tellier, F., Palauqui, J-C., Bellec, Y., Renne, C., Miquel, M., Dacosta, M., Vignard, J., Rochat, C., Markham, J. E., Moreau, P., Napier, J. A. and Faure, J-D. 2010. Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis. The Plant Cell. 22, pp. 364-375. https://doi.org/10.1105/tpc.109.071209

An inter-laboratory comparison demonstrates that [1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection

A - Papers appearing in refereed journals

Ward, J. L., Baker, J. M., Miller, S. J., Deborde, C., Maucourt, M., Biais, B., Rolin, D., Moing, A., Moco, S., Vervoort, J., Lommen, A., Schafer, H., Humpfer, E. and Beale, M. H. 2010. An inter-laboratory comparison demonstrates that [1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection. Metabolomics. 6, pp. 263-273. https://doi.org/10.1007/s11306-010-0200-4

Phenolic acids

B - Book chapters etc edited externally

Li, L., Harflett, C. and Beale, M. H. 2010. Phenolic acids. in: Shewry, P. R. and Ward, J. L. (ed.) HEALTHGRAIN methods: analysis of bioactive components in small grain cereals American Association of Cereal Chemists (AACC), St Paul, MN. pp. 41-52

Magnetite biomineralization induced by Shewanella oneidensis

A - Papers appearing in refereed journals

Perez-Gonzalez, T., Jimenez-Lopez, C., Neal, A. L., Rull-Perez, F., Rodriguez-Navarro, A., Fernandez-Vivas, A. and Ianez-Pareja, E. 2010. Magnetite biomineralization induced by Shewanella oneidensis. Geochimica et Cosmochimica Acta. 74, pp. 967-979. https://doi.org/10.1016/j.gca.2009.10.035

Perennial energy crops: implications and potential

B - Book chapters etc edited externally

Karp, A., Haughton, A. J., Bohan, D. A., Lovett, A. A., Bond, A. J., Dockerty, T., Sunnenberg, G., Finch, J. W., Sage, R. B., Appleton, K. J., Riche, A. B., Mallott, M. D., Mallott, V. E,., Cunningham, M. D., Clark, S. J. and Turner, M. M. 2009. Perennial energy crops: implications and potential. in: Winter, M. and Lobley, M. (ed.) What is land for? The food, fuel and climate change debate Earthscan Publications Ltd. pp. 47-72

Comparing components of CO2 assimilation in a variety of willow species

C2 - Non-edited contributions to conferences

Andralojc, P. J., Bencze, S., Guinard, J., Shield, I. F., Karp, A. and Parry, M. A. J. 2009. Comparing components of CO2 assimilation in a variety of willow species. Abstracts Plant Biology 2009, Honolulu, 18-22 July 2009 .

System-wide molecular evidence for phenotypic buffering in Arabidopsis

A - Papers appearing in refereed journals

Fu, J., Keurentjes, J. J. B., Bouwmeester, H., America, T., Verstappen, F. W. A., Ward, J. L., Beale, M. H., De Vos, R. C. H., Dijkstra, M., Scheltema, R. A., Johannes, F., Koornneef, M., Vreugdenhil, D., Breitling, R. and Jansen, R. C. 2009. System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics. 41, pp. 166-167. https://doi.org/10.1038/ng.308

Host selection of the giant willow aphid (Tuberolachnus salignus)

C1 - Edited contributions to conferences/learned societies

Aradottir, G. I., Karp, A., Hanley, S. J., Shield, I. F., Woodcock, C. M., Dewhirst, S. Y., Collins, M., Leather, S. and Harrington, R. 2009. Host selection of the giant willow aphid (Tuberolachnus salignus).  REDIA, XCII, 2009: 223-225.

Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .

A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to Bymoviruses. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 . pp. 18

Sulphur nutrition differentially affects the distribution of asparagine in wheat grain

A - Papers appearing in refereed journals

Shewry, P. R., Zhao, F-J., Gowa, G. B., Hawkins, N. J., Ward, J. L., Beale, M. H., Halford, N. G., Parry, M. A. J. and Abecassis, J. 2009. Sulphur nutrition differentially affects the distribution of asparagine in wheat grain. Journal of Cereal Science. 50, pp. 407-409. https://doi.org/10.1016/j.jcs.2009.07.001

Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting the genetic diversity of natural barley germplasm for the discovery of novel eIF4E alleles conferring broad spectrum resistance to bymoviruses. Abstracts International Conference on Advances in Plant Virology, Harrogate, 1-3 April 2009 .

Measurement of key compositional parameters in two species of energy grass by Fourier transform infrared spectroscopy

A - Papers appearing in refereed journals

Allison, G. G., Morris, C., Hodgson, E., Jones, J., Kubacki, M., Barraclough, T. J. P., Yates, N. E., Shield, I. F., Bridgwater, A. V. and Donnison, I. S. 2009. Measurement of key compositional parameters in two species of energy grass by Fourier transform infrared spectroscopy. Bioresource Technology. 100, pp. 6428-6433. https://doi.org/10.1016/j.biortech.2009.07.015

Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase

A - Papers appearing in refereed journals

Beaudoin, F., Wu, X., Li, F., Haslam, R. P., Markham, J. E., Zheng, H., Napier, J. A. and Kunst, L. 2009. Functional characterization of the Arabidopsis beta-ketoacyl-coenzyme A reductase candidates of the fatty acid elongase. Plant Physiology. 150, pp. 1174-1191. https://doi.org/10.1104/pp.109.137497

Genetic structure and population dynamics of a heteroecious plant pathogen Melampsora larici-epitea in short-rotation coppice willow plantations

A - Papers appearing in refereed journals

Bayon, C., Pei, M. H., Ruiz, C., Hunter, T., Karp, A. and Tubby, I. 2009. Genetic structure and population dynamics of a heteroecious plant pathogen Melampsora larici-epitea in short-rotation coppice willow plantations. Molecular Ecology. 18, pp. 3006-3019. https://doi.org/10.1111/j.1365-294X.2009.04255.x

Land use implications of increased biomass production identified by GIS-based suitability and yield mapping for miscanthus in England

A - Papers appearing in refereed journals

Lovett, A. A., Sunnenberg, G. M., Richter, G. M., Dailey, A. G., Riche, A. B. and Karp, A. 2009. Land use implications of increased biomass production identified by GIS-based suitability and yield mapping for miscanthus in England. BioEnergy Research. 2 (1-2), pp. 17-28. https://doi.org/10.1007/s12155-008-9030-x

Drought stress increases the production of 5-hydroxynorvaline in two C4 grasses

A - Papers appearing in refereed journals

Carmo-Silva, A. E., Keys, A. J., Beale, M. H., Ward, J. L., Baker, J. M., Hawkins, N. D., Arrabaca, M. C. and Parry, M. A. J. 2009. Drought stress increases the production of 5-hydroxynorvaline in two C4 grasses. Phytochemistry. 70, pp. 664-671. https://doi.org/10.1016/j.phytochem.2009.03.001

A novel, integrated approach to assessing social, economic and environmental implications of changing rural land-use: a case study of perennial biomass crops

A - Papers appearing in refereed journals

Haughton, A. J., Bond, A. J., Lovett, A. A., Dockerty, T., Sunnenberg, G., Clark, S. J., Bohan, D. A., Sage, R. B., Mallott, M. D., Mallott, V. E., Cunningham, M. D., Riche, A. B., Shield, I. F., Finch, J. W., Turner, M. M. and Karp, A. 2009. A novel, integrated approach to assessing social, economic and environmental implications of changing rural land-use: a case study of perennial biomass crops. Journal of Applied Ecology. 46 (2), pp. 315-322. https://doi.org/10.1111/j.1365-2664.2009.01623.x

Quantification of hydroxycinnamic acids and lignin in perennial forage and energy grasses by Fourier-transform infrared spectroscopy and partial least squares regression

A - Papers appearing in refereed journals

Allison, G. G., Thain, S. C., Morris, P., Morris, C., Hawkins, S., Hauck, B., Barraclough, T. J. P., Yates, N. E., Shield, I. F., Bridgwater, A. V. and Donnison, I. S. 2009. Quantification of hydroxycinnamic acids and lignin in perennial forage and energy grasses by Fourier-transform infrared spectroscopy and partial least squares regression. Bioresource Technology. 100, pp. 1252-1261. https://doi.org/10.1016/j.biortech.2008.07.043

Barley elicits a similar early basal defence response during host and non-host interactions with Polymyxa root parasites

A - Papers appearing in refereed journals

Mcgrann, G. R. D., Townsend, B. J., Antoniw, J. F., Asher, M. J. C. and Mutasa-Göttgens, E. S. 2009. Barley elicits a similar early basal defence response during host and non-host interactions with Polymyxa root parasites. European Journal of Plant Pathology. 123 (1), pp. 5-15. https://doi.org/10.1007/s10658-008-9332-z

Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains

C2 - Non-edited contributions to conferences

Urban, M., Lowe, R., Allwood, W., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2008. Metabolomic and phenotypic analyses of Fusarium graminearum wild-type and mutant strains.

The effect of the size of the cuttings planted on the subsequent performance of three contrasting willow cultivars for short rotation coppice

C1 - Edited contributions to conferences/learned societies

Shield, I. F., Macalpine, W. J. and Karp, A. 2008. The effect of the size of the cuttings planted on the subsequent performance of three contrasting willow cultivars for short rotation coppice. Biomass and Energy Crops III. Aspects of Applied Biology 90 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 225-231

Overcoming barriers to crossing in willow (Salix spp.) breeding

C1 - Edited contributions to conferences/learned societies

Macalpine, W. J., Shield, I. F., Trybush, S. O., Hayes, C. M. and Karp, A. 2008. Overcoming barriers to crossing in willow (Salix spp.) breeding. Biomass and Energy Crops III. Aspects of Applied Biology 90 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 173-180

Controlling for competition in neighbouring field plots in a willow (Salix spp.) trial

A - Papers appearing in refereed journals

Gezan, S. A., Macalpine, W. J., Shield, I. F. and Welham, S. J. 2008. Controlling for competition in neighbouring field plots in a willow (Salix spp.) trial. Aspects of Applied Biology. 90, pp. 181-187.

Biomass fuel specification and matching to conversion processes

C1 - Edited contributions to conferences/learned societies

Barraclough, T. J. P. and Shield, I. F. 2008. Biomass fuel specification and matching to conversion processes. Biomass and Energy Crops III. Aspects of Applied Biology 90 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 283-286

The influence of agronomic treatment on the combustion characteristics of some energy crops

C1 - Edited contributions to conferences/learned societies

Darvell, L. I., Jones, J. M., Shield, I. F., Riche, A. B., Yates, N. E. and Barraclough, T. J. P. 2008. The influence of agronomic treatment on the combustion characteristics of some energy crops. Biomass and Energy Crops III. Aspects of Applied Biology 90 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 269-276

Biomass and energy crops III (Aspects of Applied Biology 90)

E - Books edited/written by staff member, alone/with others

Booth, E., Green, M., Karp, A., Shield, I. F. and Stock, D. Turley, D. (ed.) 2008. Biomass and energy crops III (Aspects of Applied Biology 90). Association of Applied Biologists, Wellesbourne.

Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes

A - Papers appearing in refereed journals

Ducreux, L. J. M., Morris, W. L., Prosser, I. M., Morris, J. A., Beale, M. H., Wright, F., Shepherd, T., Bryan, G. J., Hedley, P. E. and Taylor, M. A. 2008. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59, pp. 4219-4231. https://doi.org/10.1093/jxb/ern264

Establishing substantial equivalence: metabolomics

B - Book chapters etc edited externally

Beale, M. H., Ward, J. L. and Baker, J. M. 2008. Establishing substantial equivalence: metabolomics. in: Shewry, P. R. and Jones, H. D. (ed.) Transgenic wheat, barley and oats. Methods in molecular biology, vol.478 Humana Press, New York. pp. 289-303

The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development

A - Papers appearing in refereed journals

Bach, L., Michaelson, L. V., Haslam, R. P., Bellec, Y., Gissot, L., Marion, J., Da Costa, M., Boutin, J-P., Miquel, M., Tellier, F., Domergue, F., Markham, J. E., Beaudoin, F., Napier, J. A. and Faure, J-D. 2008. The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proceedings of the National Academy of Sciences. 105, pp. 14727-14731. https://doi.org/10.1073/pnas.0805089105

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

C2 - Non-edited contributions to conferences

Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Co-ordinated expression of amino acid metabolism in response to N and S deficiency during wheat grain filling

A - Papers appearing in refereed journals

Howarth, J. R., Parmar, S., Jones, J., Shepherd, C. E., Corol, D. I., Galster, A. M., Hawkins, N. D., Miller, S. J., Baker, J. M., Verrier, P. J., Ward, J. L., Beale, M. H., Barraclough, P. B. and Hawkesford, M. J. 2008. Co-ordinated expression of amino acid metabolism in response to N and S deficiency during wheat grain filling. Journal of Experimental Botany. 59, pp. 3675-3689. https://doi.org/10.1093/jxb/ern218

A genetic study of a Salix germplasm resource reveals new insights into relationships among subgenera, sections and species

A - Papers appearing in refereed journals

Trybush, S., Jahodova, S., Macalpine, W. J. and Karp, A. 2008. A genetic study of a Salix germplasm resource reveals new insights into relationships among subgenera, sections and species. BioEnergy Research. 1, pp. 67-79. https://doi.org/10.1007/s12155-008-9007-9

Bioenergy from plants and the sustainable yield challenge

A - Papers appearing in refereed journals

Karp, A. and Shield, I. F. 2008. Bioenergy from plants and the sustainable yield challenge. New Phytologist. 179, pp. 15-32. https://doi.org/10.1111/j.1469-8137.2008.02432.x

The sensitivity of photosynthesis to phosphorus deficiency differs between C3 and C4 tropical grasses

A - Papers appearing in refereed journals

Ghannoum, O., Paul, M. J., Ward, J. L., Beale, M. H., Corol, D. I. and Conroy, J. P. 2008. The sensitivity of photosynthesis to phosphorus deficiency differs between C3 and C4 tropical grasses. Functional Plant Biology. 35, pp. 213-221. https://doi.org/10.1071/FP07256

What can be inferred from bacterium-nanoparticle interactions about the potential consequences of environmental exposure to nanoparticles?

A - Papers appearing in refereed journals

Neal, A. L. 2008. What can be inferred from bacterium-nanoparticle interactions about the potential consequences of environmental exposure to nanoparticles? Ecotoxicology. 17, pp. 362-371. https://doi.org/10.1007/s10646-008-0217-x

Torrefaction of reed canary grass, wheat straw and willow to enhance solid fuel qualities and combustion properties

A - Papers appearing in refereed journals

Bridgeman, T. G., Jones, J. M., Shield, I. F. and Williams, P. T. 2008. Torrefaction of reed canary grass, wheat straw and willow to enhance solid fuel qualities and combustion properties. Fuel. 87, pp. 844-856. https://doi.org/10.1016/j.fuel.2007.05.041

RELU-Biomass: social, economic and environmental implications of increasing rural land use under energy crops

C2 - Non-edited contributions to conferences

Karp, A., Riche, A. B., Shield, I. F., Haughton, A. J., Bohan, D. A., Lovett, A., Sunnenberg, G., Bond, A., Finch, J., Rosier, P., Turner, M., Farrar, J., Martin, G., Sage, R. and Cunningham, M. 2007. RELU-Biomass: social, economic and environmental implications of increasing rural land use under energy crops. Abstracts 16th International Plant Protection Congress (IPPC), Glasgow, 15-18 October 2007 .

Invasive species of Heracleum in Europe: an insight into genetic relationships and invasion history

A - Papers appearing in refereed journals

Jahodova, S., Trybush, S., Pyšek, P., Wade, M. and Karp, A. 2007. Invasive species of Heracleum in Europe: an insight into genetic relationships and invasion history. Diversity and Distributions. 13 (1), pp. 99-114. https://doi.org/10.1111/j.1472-4642.2006.00305.x

Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant

C2 - Non-edited contributions to conferences

Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212

Proposed minimum reporting standards for chemical analysis. Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI)

A - Papers appearing in refereed journals

Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C. A., Fan, T. W-M., Fiehn, O., Goodacre, R., Griffin, J. L., Hankemeier, T., Hardy, N., Harnly, J., Higashi, R., Kopka, J., Lane, A. N., Lindon, J. C., Marriott, P., Nicholls, A. W., Reily, M. D., Thaden, J. J. and Viant, M. R. 2007. Proposed minimum reporting standards for chemical analysis. Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics. 3 (3), pp. 211-221. https://doi.org/10.1007/s11306-007-0082-2

DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective

C2 - Non-edited contributions to conferences

Lowe, R., Allwood, J. W., Urban, M., Beale, M. H., Ward, J. L. and Hammond-Kosack, K. E. 2007. DON mycotoxin biosynthesis by Fusarium species, a metabolomics perspective. Abstracts BSPP Presidential Meeting 2007: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 64

Integration of crop models and constraint mapping for the projection of bioenergy production

C2 - Non-edited contributions to conferences

Richter, G. M., Lovett, A., Sunnenberg, G., Dailey, A. G., Riche, A. B. and Karp, A. 2007. Integration of crop models and constraint mapping for the projection of bioenergy production. Abstracts Farming Systems Design 2007: International Symposium on Methodologies for Integrated Analysis of Farm Production Systems, Catania, Sicily, 10-12 September 2007 .

Barley non-host interactions with Polymyxa species elicit a similar basal resistance response

C2 - Non-edited contributions to conferences

Mcgrann, G. R. D., Townsend, B. J., Antoniw, J. F., Asher, M. J. C. and Mutasa-Göttgens, E. S. 2007. Barley non-host interactions with Polymyxa species elicit a similar basal resistance response. Abstracts BSPP Presidential Meeting: Attack and Defence in Plant Disease, Bath, 12-14 September 2007 . pp. 67

Properties and exploitation of oleosins

A - Papers appearing in refereed journals

Capuano, F., Beaudoin, F., Napier, J. A. and Shewry, P. R. 2007. Properties and exploitation of oleosins. Biotechnology Advances. 25, pp. 203-206. https://doi.org/10.1016/j.biotechadv.2006.11.006

An anchored linkage map for sugar beet based on AFLP, SNP and RAPD markers and QTL mapping of a new source of resistance to Beet necrotic yellow vein virus

A - Papers appearing in refereed journals

Grimmer, M. K., Trybush, S., Hanley, S. J., Francis, S. A., Karp, A. and Asher, M. J. C. 2007. An anchored linkage map for sugar beet based on AFLP, SNP and RAPD markers and QTL mapping of a new source of resistance to Beet necrotic yellow vein virus. Theoretical and Applied Genetics. 114 (7), pp. 1151-1160. https://doi.org/10.1007/s00122-007-0507-3

Are GM and conventionally bred cereals really different?

A - Papers appearing in refereed journals

Shewry, P. R., Baudo, M., Lovegrove, A., Powers, S. J., Napier, J. A., Ward, J. L., Baker, J. M. and Beale, M. H. 2007. Are GM and conventionally bred cereals really different? Trends in Food Science and Technology. 18, pp. 201-209. https://doi.org/10.1016/j.tifs.2006.12.010

Recent applications of NMR spectroscopy in plant metabolomics

A - Papers appearing in refereed journals

Ward, J. L., Baker, J. M. and Beale, M. H. 2007. Recent applications of NMR spectroscopy in plant metabolomics. The FEBS Journal. 274 (5), pp. 1126-1131. https://doi.org/10.1111/j.1742-4658.2007.05675.x

Co-transcribed genes for long chain polyunsaturated fatty acid biosynthesis in the protozoon Perkinsus marinus include a plant-like FAE1 3-ketoacyl coenzyme A synthase

A - Papers appearing in refereed journals

Venegas-Caleron, M., Beaudoin, F., Sayanova, O. V. and Napier, J. A. 2007. Co-transcribed genes for long chain polyunsaturated fatty acid biosynthesis in the protozoon Perkinsus marinus include a plant-like FAE1 3-ketoacyl coenzyme A synthase. Journal of Biological Chemistry. 282, pp. 2996-3003. https://doi.org/10.1074/jbc.M607051200

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

A - Papers appearing in refereed journals

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2007. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Molecular Plant-Microbe Interactions - MPMI. 20 (2), pp. 178-193. https://doi.org/10.1094/MPMI-20-2-0178

Influence of particle size on the analytical and chemical properties of two energy crops

A - Papers appearing in refereed journals

Bridgeman, T. G., Darvell, L. I., Jones, J. M., Williams, P. T., Fahmi, R., Bridgwater, A. V., Barraclough, T. J. P., Shield, I. F., Yates, N. E., Thain, S. C. and Donnison, I. S. 2007. Influence of particle size on the analytical and chemical properties of two energy crops. Fuel. 86, pp. 60-72. https://doi.org/10.1016/j.fuel.2006.06.022

Variation in the precision of soil organic carbon maps due to different laboratory and spatial prediction methods

A - Papers appearing in refereed journals

Ping, J. L. and Dobermann, A. 2006. Variation in the precision of soil organic carbon maps due to different laboratory and spatial prediction methods . Soil Science. 171 (5), pp. 374-389. https://doi.org/10.1097/01.ss.0000209363.47698.df

Alignment of a Salix linkage map to the Populus genomic sequence reveals macrosynteny between willow and poplar genomes

A - Papers appearing in refereed journals

Hanley, S. J., Mallott, M. D. and Karp, A. 2006. Alignment of a Salix linkage map to the Populus genomic sequence reveals macrosynteny between willow and poplar genomes. Tree Genetics & Genomes. 3 (1), pp. 35-48. https://doi.org/10.1007/s11295-006-0049-x

The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling

A - Papers appearing in refereed journals

Chilley, P. M., Casson, S. A., Tarkowski, P., Hawkins, N. D., Wang, K. L-C., Hussey, P. J., Beale, M. H., Ecker, J. R., Sandberg, G. J. and Lindsey, K. 2006. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. The Plant Cell. 18, pp. 3058-3072. https://doi.org/10.1105/tpc.106.040790

Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host

C2 - Non-edited contributions to conferences

Keon, J. P. R., Antoniw, J. F., Carzaniga, R., Deller, S., Ward, J. L., Baker, J. M., Beale, M. H., Hammond-Kosack, K. E. and Rudd, J. J. 2006. Transcriptional adaptation of Mycosphaerella graminicola to programmed cell death (PCD) of its susceptible wheat host. Abstracts 3rd COGEME Interest Group Meeting, Manchester, 7-8 November 2006 .

Getting the most out of fluorescent amplified fragment length polymorphism

A - Papers appearing in refereed journals

Trybush, S., Hanley, S. J., Cho, K-H., Jahodova, S., Grimmer, M., Emelianov, I., Bayon, C. and Karp, A. 2006. Getting the most out of fluorescent amplified fragment length polymorphism. Canadian Journal Of Botany. 84 (8), pp. 1347-1354. https://doi.org/10.1139/B06-096

Cloning and functional characterisation of a cis -muuroladiene synthase from black peppermint (Mentha x piperita) and direct evidence for a chemotype unable to synthesise farnesene

A - Papers appearing in refereed journals

Prosser, I. M., Adams, R. J., Beale, M. H., Hawkins, N. D., Phillips, A. L., Pickett, J. A. and Field, L. M. 2006. Cloning and functional characterisation of a cis -muuroladiene synthase from black peppermint (Mentha x piperita) and direct evidence for a chemotype unable to synthesise farnesene. Phytochemistry. 67, pp. 1564-1571. https://doi.org/10.1016/j.phytochem.2005.06.012

Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior

A - Papers appearing in refereed journals

Beale, M. H., Birkett, M. A., Bruce, T. J. A., Chamberlain, K., Field, L. M., Huttly, A. K., Martin, J. L., Parker, R., Phillips, A. L., Pickett, J. A., Prosser, I. M., Shewry, P. R., Smart, L. E., Wadhams, L. J., Woodcock, C. M. and Zhang, Y. 2006. Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior. Proceedings of the National Academy of Sciences. 103, pp. 10509-10513. https://doi.org/10.1073/pnas.0603998103

Strigolactones in chemical ecology: waste products or vital allelochemicals?

A - Papers appearing in refereed journals

Humphrey, A. J., Galster, A. M. and Beale, M. H. 2006. Strigolactones in chemical ecology: waste products or vital allelochemicals? Natural Product Reports. 23, pp. 592-614. https://doi.org/10.1039/b512776a

A metabolomic study of substantial equivalence of field-grown genetically modified wheat

A - Papers appearing in refereed journals

Baker, J. M., Hawkins, N. D., Ward, J. L., Lovegrove, A., Napier, J. A., Shewry, P. R. and Beale, M. H. 2006. A metabolomic study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnology Journal. 4 (4), pp. 381-392. https://doi.org/10.1111/j.1467-7652.2006.00197.x

Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat

A - Papers appearing in refereed journals

Kan, Y., Wan, Y., Beaudoin, F., Leader, D. J., Edwards, K., Poole, R., Wang, D., Mitchell, R. A. C. and Shewry, P. R. 2006. Transcriptome analysis reveals differentially expressed storage protein transcripts in seeds of Aegilops and wheat. Journal of Cereal Science. 44, pp. 75-85. https://doi.org/10.1016/j.jcs.2006.04.004

Members of the Arabidopsis FAE1-like 3-ketoacyl-CoA synthase gene family substitute for the Elop proteins of Saccharomyces cerevisiae

A - Papers appearing in refereed journals

Paul, S., Gable, K., Beaudoin, F., Cahoon, E., Jaworski, J., Napier, J. A. and Dunn, T. M. 2006. Members of the Arabidopsis FAE1-like 3-ketoacyl-CoA synthase gene family substitute for the Elop proteins of Saccharomyces cerevisiae. Journal of Biological Chemistry. 281, pp. 9018-9029. https://doi.org/10.1074/jbc.M507723200

Progress towards the production of very long-chain polyunsaturated fatty acid in transgenic plants: plant metabolic engineering comes of age

A - Papers appearing in refereed journals

Napier, J. A., Haslam, R. P., Venegas Caleron, M., Michaelson, L. V., Beaudoin, F. and Sayanova, O. V. 2006. Progress towards the production of very long-chain polyunsaturated fatty acid in transgenic plants: plant metabolic engineering comes of age. Physiologia Plantarum. 126 (3), pp. 398-406. https://doi.org/10.1111/j.1399-3054.2005.00603.x

Strigol: biogenesis and physiological activity

A - Papers appearing in refereed journals

Humphrey, A. J. and Beale, M. H. 2006. Strigol: biogenesis and physiological activity. Phytochemistry. 67, pp. 636-640. https://doi.org/10.1016/j.phytochem.2005.12.026

Plant protein families as a basis for predicting the allergenicity of food proteins

B - Book chapters etc edited externally

Shewry, P. R., Jenkins, J., Beaudoin, F. and Mills, E. N. C. 2006. Plant protein families as a basis for predicting the allergenicity of food proteins. in: Wichers, H. J., Bogers, R. J., Savelkoul, H. F. J. and Gilissen, L. J. W. J. (ed.) Allergy matters: new approaches to allergy prevention and management Springer, Dordrecht. pp. 41-46

Enhanced seed phytosterol accumulation through expression of a modified HMG-CoA reductase

A - Papers appearing in refereed journals

Hey, S. J., Powers, S. J., Beale, M. H., Hawkins, N. D., Ward, J. L. and Halford, N. G. 2006. Enhanced seed phytosterol accumulation through expression of a modified HMG-CoA reductase. Plant Biotechnology Journal. 4 (2), pp. 219-229. https://doi.org/10.1111/j.1467-7652.2005.00174.x

Chickpea wilt: identification and toxicity of 8-0 -methyl-fusarubin from Fusarium acutatum

A - Papers appearing in refereed journals

Gopalakrishnan, S., Beale, M. H., Ward, J. L. and Strange, R. N. 2005. Chickpea wilt: identification and toxicity of 8-0 -methyl-fusarubin from Fusarium acutatum. Phytochemistry. 66, pp. 1536-1539. https://doi.org/10.1016/j.phytochem.2005.04.037

Differences in the molecular basis of resistance to the cyclohexanedione herbicide sethoxydim in Lolium multiflorum

A - Papers appearing in refereed journals

White, G. M., Moss, S. R. and Karp, A. 2005. Differences in the molecular basis of resistance to the cyclohexanedione herbicide sethoxydim in Lolium multiflorum. Weed Research. 45 (6), pp. 440-448. https://doi.org/10.1111/j.1365-3180.2005.00478.x

Evidence of diversity within the SnRK1b gene family of Hordeum species

A - Papers appearing in refereed journals

Clark, J. S. C., Dani, M., Halford, N. G. and Karp, A. 2005. Evidence of diversity within the SnRK1b gene family of Hordeum species. Genome. 48 (4), pp. 661-673. https://doi.org/10.1139/g05-024

Overview and analysis of the polyprotein cleavage sites in the family Potyviridae

A - Papers appearing in refereed journals

Adams, M. J., Antoniw, J. F. and Beaudoin, F. 2005. Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Molecular Plant Pathology. 6 (4), pp. 471-487. https://doi.org/10.1111/J.1364-3703.2005.00296.X

Plant FAE1-like condensing enzymes substiute for the Elop proteins in Saccharomyces cerevisiae

C2 - Non-edited contributions to conferences

Paul, S., Gable, K., Beaudoin, F., Napier, J. A. and Dunn, T. M. 2005. Plant FAE1-like condensing enzymes substiute for the Elop proteins in Saccharomyces cerevisiae.

Reverse engineering of long-chain polyunsaturated fatty acid biosynthesis into transgenic plants

A - Papers appearing in refereed journals

Napier, J. A., Beaudoin, F. and Sayanova, O. V. 2005. Reverse engineering of long-chain polyunsaturated fatty acid biosynthesis into transgenic plants. European Journal Of Lipid Science And Technology. 107 (4), pp. 249-255. https://doi.org/10.1002/ejlt.200590022

Bioassay-led isolation of Myrothecium verrucaria and verrucarin A as germination inhibitors of Orobanche crenata

A - Papers appearing in refereed journals

El-Kassas, R., Karam El-Din, Z., Beale, M. H., Ward, J. L. and Strange, R. N. 2005. Bioassay-led isolation of Myrothecium verrucaria and verrucarin A as germination inhibitors of Orobanche crenata. Weed Research. 45 (3), pp. 212-219. https://doi.org/10.1111/j.1365-3180.2005.00448.x

Biofuels and other approaches for decreasing fossil fuel emissions from agriculture

A - Papers appearing in refereed journals

Powlson, D. S., Riche, A. B. and Shield, I. F. 2005. Biofuels and other approaches for decreasing fossil fuel emissions from agriculture. Annals of Applied Biology - AAB. 146 (2), pp. 193-201. https://doi.org/10.1111/j.1744-7348.2005.040056.x

Design, expression and characterisation of lysine-rich forms of the barley seed protein CI-2

A - Papers appearing in refereed journals

Forsyth, J. L., Beaudoin, F., Halford, N. G., Sessions, R. B., Clarke, A. R. and Shewry, P. R. 2005. Design, expression and characterisation of lysine-rich forms of the barley seed protein CI-2. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 1747, pp. 221-227. https://doi.org/10.1016/j.bbapap.2004.11.018

Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts

A - Papers appearing in refereed journals

Borner, G. H. H., Sherrier, D. J., Weimar, T., Michaelson, L. V., Hawkins, N. D., Macaskill, A., Napier, J. A., Beale, M. H., Lilley, K. S. and Dupree, P. 2005. Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiology. 137 (1), pp. 104-116. https://doi.org/10.1104/pp.104.053041

Metabolite profiling of GM plants: the importance of robust experimental design and execution

B - Book chapters etc edited externally

Lewis, J., Baker, J. M., Beale, M. H. and Ward, J. L. 2004. Metabolite profiling of GM plants: the importance of robust experimental design and execution. in: Stiekema, W. J., Atanassov, A. and Nap, J. P. H. (ed.) Genomics for biosafety in plant biotechnology IOS Press, Amsterdam. pp. 47-57

Potential of metabolomics as a functional genomics tool

A - Papers appearing in refereed journals

Bino, R. J., Hall, R. D., Fiehn, O., Kopka, J., Saito, K., Draper, J., Nikolau, B. J., Mendes, P., Roessner-Tunali, U., Beale, M. H., Trethewey, R. N., Lange, B. M., Wurtele, E. S. and Sumner, L. W. 2004. Potential of metabolomics as a functional genomics tool. Trends in Plant Science. 9, pp. 418-425.

Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase

A - Papers appearing in refereed journals

Cornah, J. E., Germain, V., Ward, J. L., Beale, M. H. and Smith, S. M. 2004. Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. Journal of Biological Chemistry. 279 (41), pp. 42916-42923. https://doi.org/10.1074/jbc.M407380200

Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development

A - Papers appearing in refereed journals

Naested, H., Holm, A., Jenkins, T., Nielsen, H. B., Harris, C. A., Beale, M. H., Andersen, M., Mant, A., Scheller, H., Camara, B., Mattsson, O. and Munday, J. 2004. Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development. Journal Of Cell Science. 117 (20), pp. 4807-4818. https://doi.org/10.1242/jcs.01360

The production of long chain polyunsaturated fatty acids in transgenic plants

B - Book chapters etc edited externally

Napier, J. A., Beaudoin, F., Michaelson, L. V. and Sayanova, O. V. 2004. The production of long chain polyunsaturated fatty acids in transgenic plants. in: Setlow, J. K. (ed.) Genetic engineering: principles and methods. Vol. 26 Springer, New York. pp. 143-157

Biosynthesis and compartmentation of triacylglycerol in higher plants

B - Book chapters etc edited externally

Beaudoin, F. and Napier, J. A. 2004. Biosynthesis and compartmentation of triacylglycerol in higher plants. in: Daum, G. (ed.) Lipid metabolism and membrane biogenesis Springer, New York. pp. 267-287

The production of long chain polyunsaturated fatty acids in transgenic plants by reverse-engineering

A - Papers appearing in refereed journals

Napier, J. A., Beaudoin, F., Michaelson, L. V. and Sayanova, O. V. 2004. The production of long chain polyunsaturated fatty acids in transgenic plants by reverse-engineering. Biochimie. 86, pp. 785-793.

Field-based nutritional response evaluation of the intolerant white lupin (Lupinus albus ) cultivar Lucyanne to a lime-amended soil

A - Papers appearing in refereed journals

Kerley, S. J., Shield, I. F., Scott, T. and Stevenson, H. 2004. Field-based nutritional response evaluation of the intolerant white lupin (Lupinus albus ) cultivar Lucyanne to a lime-amended soil. The Journal of Agricultural Science. 142, pp. 153-161. https://doi.org/10.1017/S0021859604003880

Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid-biosynthesis aspartate-rich motif

A - Papers appearing in refereed journals

Prosser, I., Altug, I. G., Phillips, A. L., Konig, W. A., Bouwmeester, H. J. and Beale, M. H. 2004. Enantiospecific (+)- and (-)-germacrene D synthases, cloned from goldenrod, reveal a functionally active variant of the universal isoprenoid-biosynthesis aspartate-rich motif. Archives of Biochemistry and Biophysics. 432 (2), pp. 136-144. https://doi.org/10.1016/j.abb.2004.06.030

Population structure of the beetle pests Phyllodecta vulgatissima and P. vitellinae on UK willow plantations

A - Papers appearing in refereed journals

Batley, J., Edwards, K. J., Barker, J. H. A., Dawson, K. J., Wiltshire, C. W., Glen, D. M. and Karp, A. 2004. Population structure of the beetle pests Phyllodecta vulgatissima and P. vitellinae on UK willow plantations. Insect Molecular Biology. 13 (4), pp. 413-421. https://doi.org/10.1111/j.0962-1075.2004.00501.x

SNF1-related protein kinase (SnRK1) phosphorylates class I heat shock protein

A - Papers appearing in refereed journals

Slocombe, S. P., Beaudoin, F., Donaghy, P. G., Hardie, D. G., Dickinson, J. R. and Halford, N. G. 2004. SNF1-related protein kinase (SnRK1) phosphorylates class I heat shock protein. Plant Physiology and Biochemistry. 42, pp. 111-116.

The ecology and population genetics of the blue and brassy willow beetles (Phyllodecta (=Phratora) vulgatissima L.) and P. vitellinae L. on United Kingdom willow (Salix ) plantations

B - Book chapters etc edited externally

Karp, A. and Peacock, L. 2004. The ecology and population genetics of the blue and brassy willow beetles (Phyllodecta (=Phratora) vulgatissima L.) and P. vitellinae L. on United Kingdom willow (Salix ) plantations. in: Jolivet, P., Schmitt, M. and Santiago-Blay, J. A. (ed.) New developments in the biology of Chrysomelidae SPB Academic, The Hague. pp. 97-104

The classification, functions and evolutionary relationships of plant proteins in relation to food allergies

B - Book chapters etc edited externally

Jenkins, J. A. and Beaudoin, F. 2004. The classification, functions and evolutionary relationships of plant proteins in relation to food allergies. in: Shewry, P. R. and Mills, E. N. C. (ed.) Plant food allergens Blackwell Scientific Publications, Oxford. pp. 24-41

Defining leaf traits linked to yield in short-rotation coppice Salix

A - Papers appearing in refereed journals

Robinson, K. M., Karp, A. and Taylor, G. 2004. Defining leaf traits linked to yield in short-rotation coppice Salix. Biomass & Bioenergy. 26, pp. 417-431.

A comparative study of interspecies mating of Phratora vulgatissima and P. vitellinae using behavioural tests and molecular markers

A - Papers appearing in refereed journals

Peacock, L., Batley, J., Dungait, J. A. J., Barker, J. H. A., Powers, S. J. and Karp, A. 2004. A comparative study of interspecies mating of Phratora vulgatissima and P. vitellinae using behavioural tests and molecular markers. Entomologia Experimentalis et Applicata. 110 (3), pp. 231-241. https://doi.org/10.1111/j.0013-8703.2004.00143.x

Climate change and soil functions: consequences of inaction and possible mitigations through land management

C2 - Non-edited contributions to conferences

Powlson, D. S., Falloon, P., Coleman, K., Cox, P., Gaunt, J. L., Shield, I. F., Riche, A. B. and Whitmore, A. P. 2003. Climate change and soil functions: consequences of inaction and possible mitigations through land management. Abstracts ASA-CSSA-SSSA Annual Meeting. Changing Sciences for a Changing World: Building a Broader Vision, Denver, 2-6 November 2003 .

The potential of legumes to reduce nitrogen fertiliser use and protein imports into the UK: financial and environmental imperatives

C1 - Edited contributions to conferences/learned societies

Hall, R., Dixon-Dawson, J., Andrews, M., Andrews, M. E. and Shield, I. F. 2003. The potential of legumes to reduce nitrogen fertiliser use and protein imports into the UK: financial and environmental imperatives. Crop Quality: its Role in Sustainable Livestock Production. Aspects of Applied Biology 70 . pp. 5-15

Short cicuiting photorespiration

C2 - Non-edited contributions to conferences

Parry, M. A. J., Carvalho, J. F. C., Madgwick, P. J., Keys, A. J., Lea, P. J., Beale, M. H. and Ward, J. L. 2003. Short cicuiting photorespiration. Abstracts ASPB Annual Meeting Plant Biology 2003, Honolulu, 25-30 July 2003 . pp. Abs 379

Short circuiting photorespiration

C2 - Non-edited contributions to conferences

Parry, M. A. J., Madgwick, P. J., Keys, A. J., Carvalho, J. F. C., Lea, P. J., Beale, M. H. and Ward, J. L. 2003. Short circuiting photorespiration. Abstracts ASPB Annual Meeting Plant Biology 2003, Honolulu, 25-30 July 2003 . pp. Abs 18002

Production of high value chemicals in plants

B - Book chapters etc edited externally

Beale, M. H. and Napier, J. A. 2003. Production of high value chemicals in plants. in: Shewry, P. R., Lenton, J. R. and Anderson, H. M. (ed.) Long Ashton Research Station: one hundred years of science in support of agriculture Institute for Arable Crops Research (IACR) , Long Ashton Research Station (LARS), Bristol. pp. 284-290

Climate change and soil functions: consequences of inaction and possible mitigations through land management

C2 - Non-edited contributions to conferences

Powlson, D. S., Falloon, P., Coleman, K., Cox, P., Gaunt, J. L., Shield, I. F. and Whitmore, A. P. 2003. Climate change and soil functions: consequences of inaction and possible mitigations through land management. Abstracts ASA-CSSA-SSSA Annual Meeting. Changing Sciences for a Changing World: Building a Broader Vision, Denver, 2-6 November 2003 .

Identification of Primula fatty acid delta6-desaturases with n-3 substrate preferences

A - Papers appearing in refereed journals

Sayanova, O. V., Beaudoin, F., Michaelson, L. V., Shewry, P. R. and Napier, J. A. 2003. Identification of Primula fatty acid delta6-desaturases with n-3 substrate preferences. FEBS Letters. 542 (1-3), pp. 100-104. https://doi.org/10.1016/S0014-5793(03)00358-2

The dihydroceramide desaturase is not essential for cell viability in Schizosaccharomyces pombe

A - Papers appearing in refereed journals

Garton, S., Michaelson, L. V., Beaudoin, F., Beale, M. H. and Napier, J. A. 2003. The dihydroceramide desaturase is not essential for cell viability in Schizosaccharomyces pombe. FEBS Letters. 538, pp. 192-196.

Microsatellite markers for diverse Salix species

A - Papers appearing in refereed journals

Barker, J. H. A., Pahlich, A., Trybush, S., Edwards, K. J. and Karp, A. 2003. Microsatellite markers for diverse Salix species. Molecular Ecology Notes. 3 (1), pp. 4-6. https://doi.org/10.1046/j.1471-8286.2003.00332.x

Metabolic signalling: Role of SnRK1 in regulating sterol biosynthesis

C2 - Non-edited contributions to conferences

Hey, S. J., Beale, M. H., Mckibbin, R. S., Laurie, S. and Halford, N. G. 2003. Metabolic signalling: Role of SnRK1 in regulating sterol biosynthesis. Society for Experimental Biology Annual Main Meeting: 31st March–4th April 2002, Southampton, UK  . https://doi.org/10.1016/S1095-6433(03)00034-5

New lipid-derived signals in plants and their role in modulating gene expression

C2 - Non-edited contributions to conferences

Matthes, M. C., Michaelson, L. V., Beaudoin, F., Garton, S., Pickett, J. A. and Napier, J. A. 2003. New lipid-derived signals in plants and their role in modulating gene expression.

Secondary metabolite signalling in host-parasitic plant interactions

A - Papers appearing in refereed journals

Bouwmeester, H. J., Matusova, R., Zhongkui, S. and Beale, M. H. 2003. Secondary metabolite signalling in host-parasitic plant interactions. Current Opinion in Plant Biology. 6, pp. 358-364.

Assessment of 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana

A - Papers appearing in refereed journals

Ward, J. L., Harris, C., Lewis, J. and Beale, M. H. 2003. Assessment of 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana. Phytochemistry. 62, pp. 949-957.

Geographic variation in phenotypic traits in Phratora spp. and the effects of conditioning on feeding preference

A - Papers appearing in refereed journals

Peacock, L., Carter, P., Powers, S. J. and Karp, A. 2003. Geographic variation in phenotypic traits in Phratora spp. and the effects of conditioning on feeding preference. Entomologia Experimentalis et Applicata. 109 (1), pp. 31-37. https://doi.org/10.1046/j.1570-7458.2003.00090.x

Plant metabolomics: the missing link in functional genomics strategies

A - Papers appearing in refereed journals

Hall, R., Beale, M. H., Fiehn, O., Hardy, N., Sumner, N. and Bino, R. 2002. Plant metabolomics: the missing link in functional genomics strategies. The Plant Cell. 14, pp. 1437-1440. https://doi.org/10.1105/tpc.140720

Identification of a cDNA encoding a novel C18-delta9 polyunsaturated fatty acid-specific elongating activity from the docosahexaenoic acid (DHA)-producing microalga, Isochrysis galbana

A - Papers appearing in refereed journals

Qi, B., Beaudoin, F., Fraser, T., Stobart, A. K., Napier, J. A. and Lazarus, C. M. 2002. Identification of a cDNA encoding a novel C18-delta9 polyunsaturated fatty acid-specific elongating activity from the docosahexaenoic acid (DHA)-producing microalga, Isochrysis galbana. FEBS Letters. 510 (3), pp. 159-165. https://doi.org/10.1016/S0014-5793(01)03247-1

The Saccharomyces cerevisiae YBR159w gene encodes the 3-ketoreductase of the microsomal fatty acid elongase

A - Papers appearing in refereed journals

Han, G., Gable, K., Kohlwein, S. D., Beaudoin, F., Napier, J. A. and Dunn, T. M. 2002. The Saccharomyces cerevisiae YBR159w gene encodes the 3-ketoreductase of the microsomal fatty acid elongase. Journal of Biological Chemistry. 277, pp. 35440-35449. https://doi.org/10.1074/jbc.M205620200

A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers

A - Papers appearing in refereed journals

Hanley, S. J., Barker, J. H. A., Van Ooijen, J. W., Aldam, C., Harris, S. L., Ahman, I., Larsson, S. and Karp, A. 2002. A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers. Theoretical and Applied Genetics. 105 (6-7), pp. 1087-1096. https://doi.org/10.1007/s00122-002-0979-0

A high degree of genetic diversity is revealed in Isatis spp. (dyer's woad) by amplified fragment length polymorphism (AFLP)

A - Papers appearing in refereed journals

Gilbert, K. G., Garton, S., Karam, M. A., Arnold, G. M., Karp, A., Edwards, K. J., Cooke, D. T. and Barker, J. H. A. 2002. A high degree of genetic diversity is revealed in Isatis spp. (dyer's woad) by amplified fragment length polymorphism (AFLP). Theoretical and Applied Genetics. 104 (6-7), pp. 1150-1156. https://doi.org/10.1007/s00122-001-0863-3

Elemental sulfur and thiol accumulation in tomato and defense against a fungal vascular pathogen

A - Papers appearing in refereed journals

Williams, J. S., Hall, S. A., Hawkesford, M. J., Beale, M. H. and Cooper, R. M. 2002. Elemental sulfur and thiol accumulation in tomato and defense against a fungal vascular pathogen. Plant Physiology. 128, pp. 150-159.

A new class of lipid desaturases: identification of the delta4 sphingoid base desaturase

A - Papers appearing in refereed journals

Garton, S., Michaelson, L. V., Beaudoin, F. and Napier, J. A. 2002. A new class of lipid desaturases: identification of the delta4 sphingoid base desaturase. Biochemical Society Transactions. 30 (6), p. A122. https://doi.org/10.1042/bst030a122c

Cloning and expression of sesquiterpene synthase genes from Lettuce (Lactuca sativa L.)

A - Papers appearing in refereed journals

Bennett, M. H., Mansfield, J. W., Lewis, M. J. and Beale, M. H. 2002. Cloning and expression of sesquiterpene synthase genes from Lettuce (Lactuca sativa L.). Phytochemistry. 60, pp. 255-261.

Targeting and membrane-insertion of a sunflower oleosin in vitro and in Saccharomyces cerevisiae : the central hydrophobic domain contains more than one signal sequence, and directs oleosin insertion into the endoplasmic reticulum membrane using a signal anchor sequence mechanism

A - Papers appearing in refereed journals

Beaudoin, F. and Napier, J. A. 2002. Targeting and membrane-insertion of a sunflower oleosin in vitro and in Saccharomyces cerevisiae : the central hydrophobic domain contains more than one signal sequence, and directs oleosin insertion into the endoplasmic reticulum membrane using a signal anchor sequence mechanism. Planta. 215, pp. 293-303.

A Saccharomyces cerevisiae gene required for heterologous fatty acid elongase activity encodes a microsomal beta-keto-reductase

A - Papers appearing in refereed journals

Beaudoin, F., Gable, K., Sayanova, O. V., Dunn, T. and Napier, J. A. 2002. A Saccharomyces cerevisiae gene required for heterologous fatty acid elongase activity encodes a microsomal beta-keto-reductase. Journal of Biological Chemistry. 277, pp. 11481-11488.

GARNet, the Genomic Arabidopsis Resource Network

A - Papers appearing in refereed journals

Beale, M. H., Dupree, P., Lilley, K., Beynon, J., Trick, M., Clarke, J., Bevan, M., Bancroft, I., Jones, J., May, S., Van De Sande, K. and Leyser, O. 2002. GARNet, the Genomic Arabidopsis Resource Network. Trends in Plant Science. 7, pp. 145-147.

Genetic diversity in Echinochloa spp. collected from different geographic origins and within rice fields in Cote d'Ivoire

A - Papers appearing in refereed journals

Danquah, E. Y., Johnson, D. E., Riches, C., Arnold, G. M. and Karp, A. 2002. Genetic diversity in Echinochloa spp. collected from different geographic origins and within rice fields in Cote d'Ivoire. Weed Research. 42 (5), pp. 394-405. https://doi.org/10.1046/j.1365-3180.2002.00300.x

Plant protein families and their relationships to food allergy

A - Papers appearing in refereed journals

Shewry, P. R., Beaudoin, F., Jenkins, J., Griffiths-Jones, S. and Mills, E. N. C. 2002. Plant protein families and their relationships to food allergy. Biochemical Society Transactions. 30 (6), pp. 906-910. https://doi.org/10.1042/bst0300906

(+)-(10R )-germacrene A synthase from goldenrod, Solidago canadensis ; cDNA isolation, bacterial expression and functional analysis

A - Papers appearing in refereed journals

Prosser, I. M., Phillips, A. L., Gittings, S., Lewis, M. J., Hooper, A. M., Pickett, J. A. and Beale, M. H. 2002. (+)-(10R )-germacrene A synthase from goldenrod, Solidago canadensis ; cDNA isolation, bacterial expression and functional analysis. Phytochemistry. 60, pp. 691-702.

Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1)

A - Papers appearing in refereed journals

Slocombe, S. P., Laurie, S., Bertini, L., Beaudoin, F., Dickinson, J. R. and Halford, N. G. 2002. Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1). Plant Molecular Biology. 49, pp. 31-44.

Isolation and characterization of microsatellites in Echinochloa (L.) Beauv. spp.

A - Papers appearing in refereed journals

Danquah, E. Y., Hanley, S. J., Brookes, R. C., Aldam, C. and Karp, A. 2002. Isolation and characterization of microsatellites in Echinochloa (L.) Beauv. spp. Molecular Ecology Notes. 2 (1), pp. 54-56. https://doi.org/10.1046/j.1471-8286.2002.00144.x

Synthesis of (2E )-4-hydroxy-3-methylbut-2-enyl diphosphate, a key intermediate in the biosynthesis of isoprenoids

A - Papers appearing in refereed journals

Ward, J. L. and Beale, M. H. 2002. Synthesis of (2E )-4-hydroxy-3-methylbut-2-enyl diphosphate, a key intermediate in the biosynthesis of isoprenoids. Journal of the Chemical Society-Perkin Transactions 1. 2002, pp. 710-712.

Probing the mechanism of loss of carbon-20 in gibberellin biosynthesis. Synthesis of gibberellin 3alpha,20-hemiacetal and 19,20-lactol analogues and their metabolism by a recombinant GA 20-oxidase

A - Papers appearing in refereed journals

Ward, J. L., Gaskin, P., Brown, R. G. S., Jackson, G. S., Hedden, P., Phillips, A. L., Willis, C. L. and Beale, M. H. 2002. Probing the mechanism of loss of carbon-20 in gibberellin biosynthesis. Synthesis of gibberellin 3alpha,20-hemiacetal and 19,20-lactol analogues and their metabolism by a recombinant GA 20-oxidase. Journal of the Chemical Society-Perkin Transactions 1. 2002, pp. 232-241.

The effects of seed rate and row spacing on light interception, dry matter accumulation and seed yield in non-dwarf and dwarf genotypes of autumn-sown determinate white lupins (Lupinus albus ) in north-west Europe

A - Papers appearing in refereed journals

Shield, I. F., Scott, T., Huyghe, C., Bruneau, M., Parisseaux, B., Papineau, J., Harzic, N., Stevenson, H. J. and Leach, J. E. 2002. The effects of seed rate and row spacing on light interception, dry matter accumulation and seed yield in non-dwarf and dwarf genotypes of autumn-sown determinate white lupins (Lupinus albus ) in north-west Europe. The Journal of Agricultural Science. 138, pp. 39-55. https://doi.org/10.1017/S0021859601001691

The new genetic era: will it help us in managing plant genetic diversity?

C1 - Edited contributions to conferences/learned societies

Karp, A. 2001. The new genetic era: will it help us in managing plant genetic diversity? Jackson, M., Engels, J., Brown, A. H. D. and RamanathaRao, V. (ed.) Managing plant genetic diversity . CABI International, Wallingford, Oxon (CABI). pp. 43-56

Essentials of genetics

E - Books edited/written by staff member, alone/with others

Jones, R. N., Karp, A. and Giddings, G. 2001. Essentials of genetics. John Murray, London.

The molecular ecology of willow beetles (Phyllodecta spp.)

G - Articles in popular magazines and other technical publications

Green, J. M., Batley, J., Peacock, L., Carter, P., Glen, D. M. and Karp, A. 2001. The molecular ecology of willow beetles (Phyllodecta spp.). Antenna - Bulletin of the Royal Entomological Society. 25, pp. 254-257.

The production of gamma-linolenic acid in transgenic plants: further studies on the borage delta6-fatty acid desaturase

C1 - Edited contributions to conferences/learned societies

Sayanova, O. V., Beaudoin, F., Libisch, B., Shewry, P. R. and Napier, J. A. 2001. The production of gamma-linolenic acid in transgenic plants: further studies on the borage delta6-fatty acid desaturase. Huang, Y. S. and Ziboh, A. (ed.) Gamma-linolenic acid: recent advances in biotechnology and clinical applications . American Oil Chemists' Society (AOCS) Press, Champaign, Illinois. pp. 24-28

Mutagenesis and heterologous expression in yeast of a plant delta6-fatty acid desaturase

A - Papers appearing in refereed journals

Sayanova, O. V., Beaudoin, F., Libisch, B., Castel, A., Shewry, P. R. and Napier, J. A. 2001. Mutagenesis and heterologous expression in yeast of a plant delta6-fatty acid desaturase. Journal of Experimental Botany. 52, pp. 1581-1585.

The seed oleosins: structure, properties and biological role

A - Papers appearing in refereed journals

Napier, J. A., Beaudoin, F., Tatham, A. S., Alexander, L. G. and Shewry, P. R. 2001. The seed oleosins: structure, properties and biological role. Advances in botanical research. 35, pp. 111-138. https://doi.org/10.1016/S0065-2296(01)35005-X

The molecular ecology of willow beetles (Phyllodecta spp.)

C2 - Non-edited contributions to conferences

Green, J. M., Batley, J., Peacock, L., Carter, P., Glen, D. M. and Karp, A. 2001. The molecular ecology of willow beetles (Phyllodecta spp.). Abstracts Royal Entomological Society Annual Meeting on Insect Molecular Ecology, Cardiff, 28 September 2001 .

Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes

A - Papers appearing in refereed journals

Matthes, M. C., Singh, R., Cheah, S. C. and Karp, A. 2001. Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes. Theoretical and Applied Genetics. 102 (6-7), pp. 971-979. https://doi.org/10.1007/s001220000491

Microsatellites for the slugs Deroceras reticulatum and Arion intermedius

A - Papers appearing in refereed journals

Brookes, R. C., Barker, J. H. A., Bohan, D. A., Glen, D. M. and Karp, A. 2001. Microsatellites for the slugs Deroceras reticulatum and Arion intermedius. Molecular Ecology Notes. 1, pp. 300-302.

The causes of, and potential solutions to, seed yield instability in autumn-sown, determinate (restricted branching), white lupins (Lupinus albus L.)

C1 - Edited contributions to conferences/learned societies

Shield, I. F., Stevenson, H. J., Scott, T. and Leach, J. E. 2001. The causes of, and potential solutions to, seed yield instability in autumn-sown, determinate (restricted branching), white lupins (Lupinus albus L.). vanSanten, E., Roemer, P., Weissmann, S. and Wink, M. (ed.) Lupin, an Ancient Crop for the New Millenium. Proceedings 9th International Lupin Conference, Klink/Muritz, 20-24 June 1999 . International Lupin Association, Canterbury, New Zealand. pp. 339-345

The intolerance of white lupin (Lupinus albus L.) to alkaline soils and its adaptation to a patchy soil environment

C1 - Edited contributions to conferences/learned societies

Kerley, S. J. and Shield, I. F. 2001. The intolerance of white lupin (Lupinus albus L.) to alkaline soils and its adaptation to a patchy soil environment. vanSanten, E., Roemer, P., Weissmann, S. and Wink, M. (ed.) Lupin, an Ancient Crop for the New Millennium. Proceedings of the 9th International Lupin Conference, Klink/Muritz, 20-24 June 1999 . International Lupin Association, Canterbury, New Zealand. pp. 243-245

Specific and genotypic variation in the nutrient content of lupin species in soils of neutral and alkaline pH

A - Papers appearing in refereed journals

Kerley, S. J., Shield, I. F. and Huyghe, C. 2001. Specific and genotypic variation in the nutrient content of lupin species in soils of neutral and alkaline pH. Australian Journal of Agricultural Research. 52, pp. 93-102.

Microsatellite analysis of the inbreeding grass weed Barren Brome (Anisantha sterilis ) reveals genetic diversity at the within- and between-farm scales

A - Papers appearing in refereed journals

Green, J. M., Barker, J. H. A., Marshall, E. J. P., Froud-Williams, R. J., Peters, N. C. B., Arnold, G. M., Dawson, K. and Karp, A. 2001. Microsatellite analysis of the inbreeding grass weed Barren Brome (Anisantha sterilis ) reveals genetic diversity at the within- and between-farm scales. Molecular Ecology. 10 (4), pp. 1035-1045. https://doi.org/10.1046/j.1365-294X.2001.01250.x

Molecular tools for detecting genetic diversity

B - Book chapters etc edited externally

Karp, A. 2000. Molecular tools for detecting genetic diversity. in: Cassells, A. C., Doyle, B. M. and Curry, R. F. (ed.) Proceedings of the International Symposium on Methods and Markers for Quality Assurance in Micropropagation International Society for Horticultural Science.

An analysis of genetic diversity in coconut (Cocos nucifera) populations from across the geographic range using sequence-tagged microsatellites (SSRs) and AFLPs

A - Papers appearing in refereed journals

Teulat, B., Aldam, C., Trehin, R., Lebrun, P., Barker, J. H. A., Arnold, G. M., Karp, A., Baudouin, L. and Rognon, F. 2000. An analysis of genetic diversity in coconut (Cocos nucifera) populations from across the geographic range using sequence-tagged microsatellites (SSRs) and AFLPs. Theoretical and Applied Genetics. 100 (5), pp. 764-771. https://doi.org/10.1007/s001220051350

The targeting and accumulation of ectopically expressed oleosin in non-seed tissues of Arabidopsis thaliana

A - Papers appearing in refereed journals

Beaudoin, F. and Napier, J. A. 2000. The targeting and accumulation of ectopically expressed oleosin in non-seed tissues of Arabidopsis thaliana. Planta. 210 (3), pp. 439-445. https://doi.org/10.1007/pl00008152

In vivo targeting of a sunflower oil body protein in yeast secretory (sec) mutants

A - Papers appearing in refereed journals

Beaudoin, F., Wilkinson, B. M., Stirling, C. J. and Napier, J. A. 2000. In vivo targeting of a sunflower oil body protein in yeast secretory (sec) mutants. The Plant Journal. 23 (2), pp. 159-170. https://doi.org/10.1046/j.1365-313x.2000.00769.x

Heterologous reconstitution in yeast of the polyunsaturated fatty acid biosynthetic pathway

A - Papers appearing in refereed journals

Beaudoin, F., Michaelson, L. V., Hey, S. J., Lewis, M. J., Shewry, P. R., Sayanova, O. V. and Napier, J. A. 2000. Heterologous reconstitution in yeast of the polyunsaturated fatty acid biosynthetic pathway. Proceedings of the National Academy of Sciences. 97 (12), pp. 6421-6426. https://doi.org/10.1073/pnas.110140197

Dry matter and nitrogen accumulation during pod wall development of white lupin genotypes differing in proportion of pod walls

A - Papers appearing in refereed journals

Lagunes-Espinoza, L. C., Huyghe, C., Papineau, J. and Shield, I. F. 2000. Dry matter and nitrogen accumulation during pod wall development of white lupin genotypes differing in proportion of pod walls. The Journal of Agricultural Science. 135, pp. 389-397. https://doi.org/10.1017/S0021859699008278

Mutagenesis of the borage delta 6 fatty acid desaturase

A - Papers appearing in refereed journals

Sayanova, O. V., Beaudoin, F., Libisch, B., Shewry, P. R. and Napier, J. A. 2000. Mutagenesis of the borage delta 6 fatty acid desaturase. Biochemical Society Transactions. 28 (6), pp. 636-638. https://doi.org/10.1042/bst0280636

Production of C20 polyunsaturated fatty acids (PUFAs) by pathway engineering: identification of a PUFA elongase component from Caenorhabditis elegans

A - Papers appearing in refereed journals

Beaudoin, F., Michaelson, L. V., Lewis, M. J., Shewry, P. R., Sayanova, O. V. and Napier, J. A. 2000. Production of C20 polyunsaturated fatty acids (PUFAs) by pathway engineering: identification of a PUFA elongase component from Caenorhabditis elegans. Biochemical Society Transactions. 28 (6), pp. 661-663. https://doi.org/10.1042/bst0280661

Microsatellites for barren brome (Anisantha sterilis)

A - Papers appearing in refereed journals

Green, J. M., Edwards, K. J., Usher, S. L., Barker, J. H. A., Marshall, E. J. P., Froud-Williams, R. J. and Karp, A. 2000. Microsatellites for barren brome (Anisantha sterilis). Molecular Ecology. 9 (12), pp. 2195-2197. https://doi.org/10.1046/j.1365-294X.2000.105322.x

Biodiversity in agricultural systems: new challenges for genome diversity studies

C1 - Edited contributions to conferences/learned societies

Karp, A. 2000. Biodiversity in agricultural systems: new challenges for genome diversity studies. Flavell, R. B. and Gustafson, J. P. (ed.) Genomes: Proceedings of the 22nd Stadler Genetics Symposium . Kluwer Academic Publishers, Dordrecht, Netherlands. pp. 99-108

Metabolite profiling of sesquiterpene lactones from Lactuca species

A - Papers appearing in refereed journals

Sessa, R. A., Bennett, M. H., Lewis, M. J., Mansfield, J. W. and Beale, M. H. 2000. Metabolite profiling of sesquiterpene lactones from Lactuca species. Journal of Biological Chemistry. 275, pp. 26877-26884.

Hordeum vulgare mRNA for SnRK1-interacting protein 1

K - Protein or DNA sequences submitted to database

Slocombe, S. P., Bertini, L., Beaudoin, F., Dickinson, J. R. and Halford, N. G. 2000. Hordeum vulgare mRNA for SnRK1-interacting protein 1.

Hordeum vulgare snipla gene, partial

K - Protein or DNA sequences submitted to database

Slocombe, S. P., Bertini, L., Beaudoin, F., Dickinson, J. R. and Halford, N. G. 2000. Hordeum vulgare snipla gene, partial.

The causes of over-winter plant losses of autumn-sown white lupins (Lupinus albus ) in different regions of the UK over three seasons

A - Papers appearing in refereed journals

Shield, I. F., Scott, T., Stevenson, H. J., Leach, J. E. and Todd, A. D. 2000. The causes of over-winter plant losses of autumn-sown white lupins (Lupinus albus ) in different regions of the UK over three seasons. The Journal of Agricultural Science. 135, pp. 173-183. https://doi.org/10.1017/S0021859699008047

Isolation and characterization of polymorphic microsatellites in Cocos nucifera L.

A - Papers appearing in refereed journals

Rivera, R., Edwards, K. J., Barker, J. H. A., Arnold, G. M., Ayad, G., Hodgkin, T. and Karp, A. 1999. Isolation and characterization of polymorphic microsatellites in Cocos nucifera L. Genome. 42 (4), pp. 668-675. https://doi.org/10.1139/gen-42-4-668

Characterisation of genetic diversity in potential biomass willows (Salix spp.) by RAPD and AFLP analyses

A - Papers appearing in refereed journals

Barker, J. H. A., Matthes, M., Arnold, G. M., Edwards, K. J., Ahman, I., Larsson, S. and Karp, A. 1999. Characterisation of genetic diversity in potential biomass willows (Salix spp.) by RAPD and AFLP analyses. Genome. 42 (2), pp. 173-183. https://doi.org/10.1139/gen-42-2-173

The biogenesis of the plant seed oil body: Oleosin protein is synthesised by ER-bound ribosomes

A - Papers appearing in refereed journals

Beaudoin, F., Lacey, D. J. and Napier, J. A. 1999. The biogenesis of the plant seed oil body: Oleosin protein is synthesised by ER-bound ribosomes. Plant Physiology and Biochemistry. 37 (6), pp. 481-490. https://doi.org/10.1016/s0981-9428(99)80053-9

The accumulation of triacylglycerols within the endoplasmic reticulum of developing seeds of Helianthus annuus

A - Papers appearing in refereed journals

Lacey, D. J., Beaudoin, F., Dempsey, C. E., Shewry, P. R. and Napier, J. A. 1999. The accumulation of triacylglycerols within the endoplasmic reticulum of developing seeds of Helianthus annuus. The Plant Journal. 17 (4), pp. 397-405. https://doi.org/10.1046/j.1365-313X.1999.00387.x

The causes of, and potential solutions to, yield instability in autumn-sown, determinate (restricted branching) white lupins (Lupinus albus L.)

C2 - Non-edited contributions to conferences

Shield, I. F., Stevenson, H. J., Scott, T., Leach, J. E. and Milford, G. F. J. 1999. The causes of, and potential solutions to, yield instability in autumn-sown, determinate (restricted branching) white lupins (Lupinus albus L.). Abstracts 9th International Lupin Conference: Lupin - an Ancient Crop for the New Millennium, Klink, 20-24 June 1999 . pp. 297

The intolerance of the white lupin (Lupinus albus L.) to alkaline soils and its adaptation to a patchy soil environment

C2 - Non-edited contributions to conferences

Kerley, S. J. and Shield, I. F. 1999. The intolerance of the white lupin (Lupinus albus L.) to alkaline soils and its adaptation to a patchy soil environment. Abstracts 9th International Lupin Conference: Lupin - an Ancient Crop for the New Millennium, Klink, 20-24 June 1999 . pp. 147

Organisation and objectives of the European LUPIN Programme

C2 - Non-edited contributions to conferences

Huyghe, C., Harzic, N., Milford, G. F. J., Shield, I. F., Gamerre, V., Christiansen, J., Jornsgard, B., Romer, P., De Rocha, J. and Knudsen, K. E. B. 1999. Organisation and objectives of the European LUPIN Programme. Abstracts 9th International Lupin Conference: Lupin - an Ancient Crop for the New Millennium, Klink, 20-24 June 1999 . pp. 123

The performance of autumn-sown determinate white lupins (Lupinus albus L.) in different regions of the UK, 1997 and 1998

C1 - Edited contributions to conferences/learned societies

Shield, I. F., Lockley, K. D., Carpanini, J. J., Spink, J. H. and Snowden, K. 1999. The performance of autumn-sown determinate white lupins (Lupinus albus L.) in different regions of the UK, 1997 and 1998. Protection and Production of Combinable Break Crops. Aspects of Applied Biology 56 . pp. 219-225

The use of physiological criteria to optimise production in white lupins

C1 - Edited contributions to conferences/learned societies

Milford, G. F. J., Shield, I. F. and Huyghe, C. 1999. The use of physiological criteria to optimise production in white lupins. Proceedings 8th International Lupin Conference, Monterey, 1996 . pp. 2-10

Comparison of autumn-sown white lupin cultivars (Lupinus albus) for the UK

G - Articles in popular magazines and other technical publications

Leach, J. E., Stevenson, H. J., Shield, I. F., Scott, T. and Milford, G. F. J. 1999. Comparison of autumn-sown white lupin cultivars (Lupinus albus) for the UK. Annals of Applied Biology (Tests of Agrochemicals and Cultivars). 20, pp. 50-51.

Seed and pod development of autumn-sown, determinate white lupins (Lupinus albus ) in relation to the assimilation and distribution of dry matter and nitrogen in crops grown at different densities

A - Papers appearing in refereed journals

Milford, G. F. J., Shield, I. F., Stevenson, J. H., Scott, T. and Leach, J. E. 1999. Seed and pod development of autumn-sown, determinate white lupins (Lupinus albus ) in relation to the assimilation and distribution of dry matter and nitrogen in crops grown at different densities. The Journal of Agricultural Science. 133, pp. 141-150. https://doi.org/10.1017/S0021859699006826

Caged plant growth regulators

B - Book chapters etc edited externally

Allan, A. C., Ward, J. L., Beale, M. H. and Trewavas, A. J. 1998. Caged plant growth regulators. in: Marriott, G. (ed.) Methods in Enzymology Vol. 291. Caged Compounds Academic Press, San Diego.

A study of genetic diversity in Populus nigra subsp. betulifolia in the upper severn area of the UK using AFLP markers

A - Papers appearing in refereed journals

Winfield, M. O., Arnold, G. M., Cooper, F., Le Ray, M., White, J., Karp, A. and Edwards, K. J. 1998. A study of genetic diversity in Populus nigra subsp. betulifolia in the upper severn area of the UK using AFLP markers. Molecular Ecology. 7 (1), pp. 3-10. https://doi.org/10.1046/j.1365-294x.1998.00299.x

Technical Notes. Isolation and characterization of microsatellite loci in the wheat pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals

Owen, P. G., Pei, M. H., Karp, A., Royle, D. J. and Edwards, K. J. 1998. Technical Notes. Isolation and characterization of microsatellite loci in the wheat pathogen Mycosphaerella graminicola. Molecular Ecology. 7 (11), pp. 1611-1612. https://doi.org/10.1046/j.1365-294X.1998.00499.x

Primer Notes. The isolation and characterization of microsatellite loci in the willow beetles, Phyllodecta vulgatissima (L.) and P-vitellinae (L.)

A - Papers appearing in refereed journals

Batley, J., Edwards, K. J., Wiltshire, C. W., Glen, D. and Karp, A. 1998. Primer Notes. The isolation and characterization of microsatellite loci in the willow beetles, Phyllodecta vulgatissima (L.) and P-vitellinae (L.). Molecular Ecology. 7 (10), pp. 1434-1436. https://doi.org/10.1111/j.1365-294X.1998.00445.x

Secondary structure of oleosins in oil bodies isolated from seeds of safflower (Carthamus tinctorius L.) and sunflower (Helianthus annuus L.)

A - Papers appearing in refereed journals

Lacey, D. J., Wellner, N., Beaudoin, F., Napier, J. A. and Shewry, P. R. 1998. Secondary structure of oleosins in oil bodies isolated from seeds of safflower (Carthamus tinctorius L.) and sunflower (Helianthus annuus L.). Biochemical Journal. 334, pp. 469-477.

Hordeum vulgare mRNA for SnRK1-type protein kinase, partial

K - Protein or DNA sequences submitted to database

Slocombe, S. P., Bertini, L., Beaudoin, F., Dickinson, J. R. and Halford, N. G. 1998. Hordeum vulgare mRNA for SnRK1-type protein kinase, partial.

A comparison of management regimes for one-year rotational set-aside within a sequence of winter wheat crops, and of growing wheat without interruption. 2. Effects on vegetation and weed control

A - Papers appearing in refereed journals

Shield, I. F. and Bacon, E. T. G. 1998. A comparison of management regimes for one-year rotational set-aside within a sequence of winter wheat crops, and of growing wheat without interruption. 2. Effects on vegetation and weed control. The Journal of Agricultural Science. 130, pp. 389-397. https://doi.org/10.1017/S0021859698005449

Daylength responses, flowering time, and seed filling in lupins

A - Papers appearing in refereed journals

Dracup, M., Thomson, B., Reader, M., Kirby, E. J. M., Shield, I. F. and Leach, J. E. 1998. Daylength responses, flowering time, and seed filling in lupins. Australian Journal of Agricultural Research. 49, pp. 1047-1055.

Molecular technologies for biodiversity evaluation: Opportunities and challenges

A - Papers appearing in refereed journals

Karp, A., Edwards, K. J., Bruford, M., Funk, S., Vosman, B., Morgante, M., Seberg, O., Kremer, A., Boursot, P., Arctander, P., Tautz, D. and Hewitt, G. M. 1997. Molecular technologies for biodiversity evaluation: Opportunities and challenges. Nature Biotechnology. 15 (7), pp. 625-628. https://doi.org/10.1038/nbt0797-625

Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories

A - Papers appearing in refereed journals

Jones, C. J., Edwards, K. J., Castaglione, S., Winfield, M. O., Sala, F., van de Wiel, C., Bredemeijer, G., Vosman, B., Matthes, M., Daly, A., Brettschneider, R., Bettini, P., Buiatti, M., Maestri, E., Malcevschi, A., Marmiroli, N., Aert, R., Volckaert, G., Rueda, J., Linacero, R., Vazquez, A. and Karp, A. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding. 3 (5), pp. 381-390. https://doi.org/10.1023/a:1009612517139

AFLP analysis sheds light on distribution of two Salix species and their hybrid along a natural gradient

A - Papers appearing in refereed journals

Beismann, H., Barker, J. H. A., Karp, A. and Speck, T. 1997. AFLP analysis sheds light on distribution of two Salix species and their hybrid along a natural gradient. Molecular Ecology. 6 (10), pp. 989-993. https://doi.org/10.1046/j.1365-294X.1997.00273.x

Molecular tools in plant genetic resources conservation: a guide to the technologies

E - Books edited/written by staff member, alone/with others

Karp, A., Kresovich, S., Bhat, K. V., Ayad, W. G. and Hodgkin, T. 1997. Molecular tools in plant genetic resources conservation: a guide to the technologies. Rome, IPGRI.

Factors affecting winter survival of the florally determinate white lupin cv. Lucyane

A - Papers appearing in refereed journals

Bateman, G. L., Ferguson, A. W. and Shield, I. F. 1997. Factors affecting winter survival of the florally determinate white lupin cv. Lucyane. Annals of Applied Biology - AAB. 130 (2), pp. 349-359. https://doi.org/10.1111/j.1744-7348.1997.tb06838.x

Analysis of cereal chromosomes by atomic force microscopy

A - Papers appearing in refereed journals

Mcmaster, T. J., Winfield, M. O., Karp, A. and Miles, M. J. 1996. Analysis of cereal chromosomes by atomic force microscopy. Genome. 39 (2), pp. 439-444. https://doi.org/10.1139/g96-055

Molecular Techniques in the Assessment of Botanical Diversity

A - Papers appearing in refereed journals

Karp, A., Seberg, O. L. E. and Buiatti, M. 1996. Molecular Techniques in the Assessment of Botanical Diversity. Annals of Botany. 78 (2), pp. 143-149. https://doi.org/10.1006/anbo.1996.0106

A comparative study of the mitochondrial genome organization in in vitro cultures of diploid, tetraploid, and hexaploid Triticum species

A - Papers appearing in refereed journals

Hartmann, C., Winfield, M., Corre, F., Davey, M. R., Rode, A. and Karp, A. 1996. A comparative study of the mitochondrial genome organization in in vitro cultures of diploid, tetraploid, and hexaploid Triticum species. Theoretical and Applied Genetics. 93 (5-6), pp. 968-974. https://doi.org/10.1007/bf00224100

Microsatellite libraries enriched for several microsatellite sequences in plants

A - Papers appearing in refereed journals

Edwards, K. J., Barker, J. H. A., Daly, A., Jones, C. and Karp, A. 1996. Microsatellite libraries enriched for several microsatellite sequences in plants. BioTechniques. 20 (5), pp. 758-760. https://doi.org/10.2144/96205bm04

The place of autumn sown lupins in arable rotations in Northern Britain

C1 - Edited contributions to conferences/learned societies

Shield, I. F. and Scott, T. 1996. The place of autumn sown lupins in arable rotations in Northern Britain. Rotations and Cropping Systems. Aspects of Applied Biology 47 . pp. 375-378

The costs of alternative methods of managing set-aside land within the European Community

A - Papers appearing in refereed journals

Shield, I. F., Godwin, R. J. and Smith, D. L. O. 1996. The costs of alternative methods of managing set-aside land within the European Community. Soil & Tillage Research. 37, pp. 273-287.

The potential of lupins for UK agriculture

A - Papers appearing in refereed journals

Milford, G. F. J. and Shield, I. F. 1996. The potential of lupins for UK agriculture. Journal of the Royal Agricultural Society of England. 157, pp. 84-91.

Effect of sowing date and planting density on the structure and yield of autumn-sown, florally-determinate white lupins (Lupinus albus) in the United Kingdom

A - Papers appearing in refereed journals

Shield, I. F., Stevenson, J. H., Leach, J. E., Scott, T., Day, J. M. and Milford, G. F. J. 1996. Effect of sowing date and planting density on the structure and yield of autumn-sown, florally-determinate white lupins (Lupinus albus) in the United Kingdom. The Journal of Agricultural Science. 127 (2), pp. 183-191. https://doi.org/10.1017/S0021859600077960

Simple physiological models of plant development for the white lupin (Lupinus albus ) and their use in agricultural practice

C1 - Edited contributions to conferences/learned societies

Milford, G. F. J., Shield, I. F., Siddons, P. A., Jones, R. J. A. and Huyghe, C. 1996. Simple physiological models of plant development for the white lupin (Lupinus albus ) and their use in agricultural practice. Modelling in Applied Biology. Aspects of Applied Biology 46 . pp. 1-6

Nonrandom chromosome variation and morphogenic potential in cell-lines of bread wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals

Winfield, M. O., Schmitt, M., Lorz, H., Davey, M. R. and Karp, A. 1995. Nonrandom chromosome variation and morphogenic potential in cell-lines of bread wheat (Triticum aestivum L.). Genome. 38 (5), pp. 869-878. https://doi.org/10.1139/g95-115

Chromosome 5D instability in cell-lines of Triticum tauschii and morphological variation in regenerated plants

A - Papers appearing in refereed journals

Winfield, M. O., Karp, A., Lazzeri, P. A. and Davey, M. R. 1995. Chromosome 5D instability in cell-lines of Triticum tauschii and morphological variation in regenerated plants. Genome. 38 (4), pp. 737-742. https://doi.org/10.1139/g95-092

Atomic-force microscopy of plant chromosomes

A - Papers appearing in refereed journals

Winfield, M., Mcmaster, T. J., Karp, A. and Miles, M. J. 1995. Atomic-force microscopy of plant chromosomes. Chromosome Research. 3 (2), pp. 128-131. https://doi.org/10.1007/bf00710674

Analysis of rye B-chromosome structure using fluorescence in situ hybridization (FISH)

A - Papers appearing in refereed journals

Wilkes, T. M., Francki, M. G., Langridge, P., Karp, A., Jones, R. N. and Forster, J. W. 1995. Analysis of rye B-chromosome structure using fluorescence in situ hybridization (FISH). Chromosome Research. 3 (8), pp. 466-472. https://doi.org/10.1007/bf00713960

Biotechnology, biodiversity, and conversation

A - Papers appearing in refereed journals

Karp, A. and Ingram, D. S. 1995. Biotechnology, biodiversity, and conversation. Bio-Technology. 13 (5), pp. 522-522. https://doi.org/10.1038/nbt0595-522

Somaclonal variation as a tool for crop improvement

A - Papers appearing in refereed journals

Karp, A. 1995. Somaclonal variation as a tool for crop improvement. Euphytica. 85 (1-3), pp. 295-302. https://doi.org/10.1007/bf00023959

The performance of autumn-sown determinate genotypes of the white lupin (Lupinus albus ) in different regions of the United Kingdom

C2 - Non-edited contributions to conferences

Shield, I. F. and Milford, G. F. J. 1995. The performance of autumn-sown determinate genotypes of the white lupin (Lupinus albus ) in different regions of the United Kingdom. Proceedings 2nd European Grain Legume Conference, Copenhagen, 1995 . pp. 144

Cytological and molecular evidence of deletion of ribosomal RNA genes in chromosome 6 of barley (Hordeum vulgare)

A - Papers appearing in refereed journals

Gecheff, K., Hvarleva, T., Georgiev, S., Wilkes, T. and Karp, A. 1994. Cytological and molecular evidence of deletion of ribosomal RNA genes in chromosome 6 of barley (Hordeum vulgare). Genome. 37 (3), pp. 419-425. https://doi.org/10.1139/g94-059

Analysis of the mitochondrial DNA of the somatic hybrids of Solanum brevidens and s. tuberosum using non-radioactive digoxigenin-labeled DNA probes

A - Papers appearing in refereed journals

Xu, Y-S., Jones, M. G. K., Karp, A. and Pehu, E. 1993. Analysis of the mitochondrial DNA of the somatic hybrids of Solanum brevidens and s. tuberosum using non-radioactive digoxigenin-labeled DNA probes. Theoretical and Applied Genetics. 85 (8), pp. 1017-1022. https://doi.org/10.1007/BF00215042

A comparison of chromosome instability in cell suspensions of diploid, tetraploid and hexaploid wheats

A - Papers appearing in refereed journals

Winfield, M., Davey, M. R. and Karp, A. 1993. A comparison of chromosome instability in cell suspensions of diploid, tetraploid and hexaploid wheats. Heredity. 70, pp. 187-194. https://doi.org/10.1038/hdy.1993.28

Effect of genotype on chromosome variation in tissue-culture of inbred and outbred rye

A - Papers appearing in refereed journals

Puolimatka, M. and Karp, A. 1993. Effect of genotype on chromosome variation in tissue-culture of inbred and outbred rye. Heredity. 71, pp. 138-144. https://doi.org/10.1038/hdy.1993.117

Identification of the E3900 family, a second family of rye B chromosome specific repeated sequences

A - Papers appearing in refereed journals

Blunden, R., Wilkes, T. J., Forster, J. W., Jimenez, M. M., Sandery, M. J., Karp, A. and Jones, R. N. 1993. Identification of the E3900 family, a second family of rye B chromosome specific repeated sequences. Genome. 36 (4), pp. 706-711. https://doi.org/10.1139/g93-095

Variation in telomeric heterochromatin in somaclones of rye

A - Papers appearing in refereed journals

Karp, A., Owen, P. G., Steele, S. H., Bebeli, P. J. and Kaltsikes, P. J. 1992. Variation in telomeric heterochromatin in somaclones of rye. Genome. 35 (4), pp. 590-593. https://doi.org/10.1139/g92-088

Chromosomal assignment of genes in barley using telosomic wheat-barley addition lines

A - Papers appearing in refereed journals

Cannell, M., Karp, A., Isaac, P. G. and Shewry, P. R. 1992. Chromosomal assignment of genes in barley using telosomic wheat-barley addition lines. Genome. 35 (1), pp. 17-23. https://doi.org/10.1139/g92-003

Regeneration, stability and transformation of barley

B - Book chapters etc edited externally

Karp, A. and Lazzeri, P. A. 1992. Regeneration, stability and transformation of barley. in: Shewry, P. R. (ed.) Barley, genetics, biochemistry, molecular biology and biotechnology CABI International, Wallingford, Oxon (CABI). pp. 549-571

Somaclonal variation from cultured immature embryos of sister lines of rye differing in heterochromatic content

A - Papers appearing in refereed journals

Bebeli, P. J., Karp, A. and Kaltsikes, P. J. 1990. Somaclonal variation from cultured immature embryos of sister lines of rye differing in heterochromatic content. Genome. 33 (2), pp. 177-183. https://doi.org/10.1139/g90-029

Species-specific sequences in the genus solanum - identification, characterization, and application to study somatic hybrids of solanum-brevidens and solanum-tuberosum

A - Papers appearing in refereed journals

Pehu, E., Thomas, M., Poutala, T., Karp, A. and Jones, M. G. K. 1990. Species-specific sequences in the genus solanum - identification, characterization, and application to study somatic hybrids of solanum-brevidens and solanum-tuberosum. Theoretical and Applied Genetics. 80 (5), pp. 693-698. https://doi.org/10.1007/BF00224231

The application of protoplast technology to potato improvement

C2 - Non-edited contributions to conferences

Jones, M. G. K., Jones, H., Dunckley, R., Karp, A. and Pehu, E. 1990. The application of protoplast technology to potato improvement. European Association of Potato Research Meeting, Edinburgh, 1990. Abstract. pp. 96

Application of linkage group specific RFLPs to study assymetric hybrids of S. tuberosum and S. brevidens

C2 - Non-edited contributions to conferences

Pehu, E., Malone, R., Karp, A. and Jones, M. G. K. 1990. Application of linkage group specific RFLPs to study assymetric hybrids of S. tuberosum and S. brevidens. European Association of Potato Research Meeting, Edinburgh, 1990. Abstract. pp. 13

Studies on the genetic basis of resistance to potato leaf roll virus, potato virus Y and potato virus X in Solanum brevidens using somatic hybrids of Solanum brevidens and Solanum tuberosum.

A - Papers appearing in refereed journals

Pehu, E., Gibson, R. W., Jones, M. G. K. and Karp, A. 1990. Studies on the genetic basis of resistance to potato leaf roll virus, potato virus Y and potato virus X in Solanum brevidens using somatic hybrids of Solanum brevidens and Solanum tuberosum. Plant Science. 69 (1), pp. 95-101. https://doi.org/10.1016/0168-9452(90)90107-y

Physical mapping of the B-hordein loci on barley chromosome 5 by in situ hybridization

A - Papers appearing in refereed journals

Clark, M., Karp, A. and Archer, S. 1989. Physical mapping of the B-hordein loci on barley chromosome 5 by in situ hybridization. Genome. 32 (5), pp. 925-929. https://doi.org/10.1139/g89-531

Molecular, cytogenetic and morphological characterization of somatic hybrids of dihaploid Solanum tuberosum and diploid S. brevidens.

A - Papers appearing in refereed journals

Pehu, E., Karp, A., Moore, K., Steele, S., Dunckley, R. and Jones, M. G. K. 1989. Molecular, cytogenetic and morphological characterization of somatic hybrids of dihaploid Solanum tuberosum and diploid S. brevidens. Theoretical and Applied Genetics. 78 (5), pp. 696-704. https://doi.org/10.1007/BF00262566

Cytogenetical analysis of parental genome stabilities in somatic hybrids of Solanum tuberosum and S. brevidens using species-specific probes.

C2 - Non-edited contributions to conferences

Pehu, E., Karp, A., Thomas, M., Clarke, M. and Jones, M. G. K. 1989. Cytogenetical analysis of parental genome stabilities in somatic hybrids of Solanum tuberosum and S. brevidens using species-specific probes. In Proceedings of the 10th International Chromosome Symposium, Uppsala, 1989, Abstract p 103.

Improving potatoes.

C2 - Non-edited contributions to conferences

Jones, M. G. K., Dunckley, R., Steele, S., Pehu, E., Karp, A. and Gibson, R. W. 1989. Improving potatoes.  Proceedings of the International Biological Conference, Leicester, 1989. Abstract p.7..

Identification and characterisation of Solanum brevidens and Solanum tuberosum specific DNA sequences and their use in a somatic hybridisation programme.

C2 - Non-edited contributions to conferences

Pehu, E., Karp, A., Gibson, R. W., Thomas, M., Malone, R. and Jones, M. G. K. 1989. Identification and characterisation of Solanum brevidens and Solanum tuberosum specific DNA sequences and their use in a somatic hybridisation programme. Proceedings of the 1st International Symposium on the Molecular Biology of thge Potato, Maine. Abstract p.67..

Cytogenetical analysis of parental genome stabilities in somatic hybrids of Solanum tuberosum and S. brevidens using species-specific probes.

C2 - Non-edited contributions to conferences

Pehu, E., Gibson, R. W., Karp, A. and Jones, M. G. K. 1989. Cytogenetical analysis of parental genome stabilities in somatic hybrids of Solanum tuberosum and S. brevidens using species-specific probes. Proceedings of the 1st International Symposium on the Molecular Biology of thge Potato, Maine. Abstract p.38..

Morphogenetic response of isogenic lines of Triticale differing in their content of heterochromatin.

C1 - Edited contributions to conferences/learned societies

Bebeli, P. J., Karp, A. and Kaltsikes, P. J. 1989. Morphogenetic response of isogenic lines of Triticale differing in their content of heterochromatin. Proceedings of the 7th International Wheat Genetics Symposium. Vol.1. T. E. Miller & R.M.D. Koebner eds. IPRS, Cambridge.. pp. 715-718

Variability in potato tissue culture

A - Papers appearing in refereed journals

Karp, A., Jones, M. G. K., Foulger, D., Fish, N. and Bright, S. W. J. 1989. Variability in potato tissue culture. American potato journal. 66 (10), pp. 669-684. https://doi.org/10.1007/bf02853986

Genetic manipulation of arable crop plants by protoplast fusion and direct gene transfer.

A - Papers appearing in refereed journals

Jones, M. G. K., Jones, H., Lee, B. T., Lindsey, K., Potter, R. H., Karp, A. and Pehu, E. 1989. Genetic manipulation of arable crop plants by protoplast fusion and direct gene transfer. Journal Of Cellular Biochemistry. 13D (Supplement), p. 262.

Isolation, culture and regeneration of plants from potato protoplasts

A - Papers appearing in refereed journals

Jones, H., Karp, A. and Jones, M. G. K. 1989. Isolation, culture and regeneration of plants from potato protoplasts. Plant Cell Reports. 8 (5), pp. 307-311. https://doi.org/10.1007/BF00274137

The 15th Congress of the Scandinavian Society for Plant Physiology (Abstracts). Variation in chromosome-number in somatic hybrids of dihaploid potato solanum tuberosum and solanum brevidens

A - Papers appearing in refereed journals

Pehu, E., Potter, R., Karp, A. and Jones, M. G. K. 1988. The 15th Congress of the Scandinavian Society for Plant Physiology (Abstracts). Variation in chromosome-number in somatic hybrids of dihaploid potato solanum tuberosum and solanum brevidens. Physiologia Plantarum. 73 (2), pp. A22-A22. https://doi.org/10.1111/j.1399-3054.1988.tb00585.x

Chromosome number and parental nuclear and chloroplast DNA contributions in somatic hybrids of dihaploid S. tuberosum and S. brevidens .

C2 - Non-edited contributions to conferences

Pehu, E., Karp, A. and Jones, M. G. K. 1988. Chromosome number and parental nuclear and chloroplast DNA contributions in somatic hybrids of dihaploid S. tuberosum and S. brevidens . Abstracts Eucarpia Meeting on Genetic Manipulation in Plant Breeding, Elsinore, Denmark, 1988, 111. .

Variation in chromosome number in somatic hybrids of diploid potato (Solanum tuberosum and S. brevidens ).

C2 - Non-edited contributions to conferences

Pehu, E., Potter, R., Karp, A. and Jones, M. G. K. 1988. Variation in chromosome number in somatic hybrids of diploid potato (Solanum tuberosum and S. brevidens ).  Proceedings 15th Congress of the Scandanavian Society of Plant Physiology, Turku, Finland, 1988, 22A.. Wiley.

Chromosome variation in dividing protoplasts and cell suspensions of wheat.

G - Articles in popular magazines and other technical publications

Karp, A., Wu, Q. S., Steele, S. H. and Jones, M. G. K. 1988. Chromosome variation in dividing protoplasts and cell suspensions of wheat. Annual Wheat Newsletter. 34, p. 97.

Transformation in potato.

C2 - Non-edited contributions to conferences

Ooms, G., Risiott, R., Karp, A. and Phelpstead, J. 1988. Transformation in potato. Abstracts 2nd International congress plant molecular biology, Jerusalem, 1988, 588.

Molecular characterisation of somatic hybrids of Solanum tuberosum and S. brevidens.

C2 - Non-edited contributions to conferences

Pehu, E., Clark, M., Karp, A. and Jones, M. G. K. 1988. Molecular characterisation of somatic hybrids of Solanum tuberosum and S. brevidens. Abstracts 2nd International congress plant molecular biology, Jerusalem, 1988, 432.

Origins and causes of chromosome instability in plant tissue culture and regeneration.

G - Articles in popular magazines and other technical publications

Karp, A. 1988. Origins and causes of chromosome instability in plant tissue culture and regeneration.

Isolation, culture and morphogenesis from wheat protoplasts, and study of expression of DNA constructs by direct gene transfer

A - Papers appearing in refereed journals

Lee, B. T., Murdoch, K., Topping, J., De Both, M. T. J., Wu, Q. S., Karp, A., Steele, S., Symonds, C., Kreis, M. and Jones, M. G. K. 1988. Isolation, culture and morphogenesis from wheat protoplasts, and study of expression of DNA constructs by direct gene transfer. Plant Cell, Tissue and Organ Culture. 12 (2), pp. 223-226. https://doi.org/10.1007/bf00040091

Production of somatic hybrids by electrofusion in Solanum

A - Papers appearing in refereed journals

Fish, N., Karp, A. and Jones, M. G. K. 1988. Production of somatic hybrids by electrofusion in Solanum. Theoretical and Applied Genetics. 76 (2), pp. 260-266. https://doi.org/10.1007/BF00257854

Test-tube improvements of arable crops: developments for the 21st century.

G - Articles in popular magazines and other technical publications

Karp, A., Jones, M. G. K. and Ooms, G. 1988. Test-tube improvements of arable crops: developments for the 21st century.

Plant regeneration and somaclonal variation from cultured immature embryos of sister lines of rye and triticale differing in their content of heterochromatin. 1. Morphogenetic response.

A - Papers appearing in refereed journals

Bebeli, P. J., Karp, A. and Kaltsikes, P. J. 1988. Plant regeneration and somaclonal variation from cultured immature embryos of sister lines of rye and triticale differing in their content of heterochromatin. 1. Morphogenetic response. Theoretical and Applied Genetics. 75, pp. 929-936.

Improvement of the seed protein-quality of barley + wheat by genetic-engineering

A - Papers appearing in refereed journals

Shewry, P. R., Tatham, A. S., Karp, A. and Jones, M. G. K. 1987. Improvement of the seed protein-quality of barley + wheat by genetic-engineering. Cereal Foods World. 32 (9), pp. 674-674.

Chromosome variation in dividing protoplasts and cell suspensions of wheat.

A - Papers appearing in refereed journals

Karp, A., Wu, Q. S., Steele, S. H. and Jones, M. G. K. 1987. Chromosome variation in dividing protoplasts and cell suspensions of wheat. Theoretical and Applied Genetics. 74 (1), pp. 140-146. https://doi.org/10.1007/bf00290096

Genetic transformation in two potato cultivars with T-DNA from disarmed Agrobacterium

A - Papers appearing in refereed journals

Ooms, G., Burrell, M. M., Karp, A., Bevan, M. and Hille, J. 1987. Genetic transformation in two potato cultivars with T-DNA from disarmed Agrobacterium. Theoretical and Applied Genetics. 73 (5), pp. 744-750. https://doi.org/10.1007/BF00260785

Relative stability among barley plants regenerated from cultured immature embryos

A - Papers appearing in refereed journals

Karp, A., Steele, S. H., Parmar, S., Jones, M. G. K., Shewry, P. R. and Breiman, A. 1987. Relative stability among barley plants regenerated from cultured immature embryos. Genome. 29 (3), pp. 405-412. https://doi.org/10.1139/g87-071

Heritable somaclonal variation in wild barley (Hordeum spontaneum)

A - Papers appearing in refereed journals

Breiman, A., Rotem-Abarbanell, D., Karp, A. and Shashkin, H. 1987. Heritable somaclonal variation in wild barley (Hordeum spontaneum). Theoretical and Applied Genetics. 74 (1), pp. 104-122. https://doi.org/10.1007/BF00290092

Cytology of wheat suspensions and cultured protoplasts.

G - Articles in popular magazines and other technical publications

Karp, A., Wu, Q. S. and Jones, M. G. K. 1987. Cytology of wheat suspensions and cultured protoplasts. Annual Wheat Newsletter. 33, p. 102.

Cell and molecular biology : what do they have in store for the grain trade?

G - Articles in popular magazines and other technical publications

Karp, A. and Shewry, P. R. 1987. Cell and molecular biology : what do they have in store for the grain trade?

Potato protoplasts and tissue culture in crop improvement

A - Papers appearing in refereed journals

Karp, A., Jones, M. G. K., Foulger, D., Ooms, G. and Bright, S. W. J. 1987. Potato protoplasts and tissue culture in crop improvement. Biotechnology and genetic engineering reviews. 5 (1), pp. 1-32. https://doi.org/10.1080/02648725.1987.10647833

Electrofusion and electroporation of crop plant protoplasts.

G - Articles in popular magazines and other technical publications

Jones, M. G. K., Karp, A., Jones, H., Cooper-Bland, S., Lindsey, K., Wu, Q. S., Lee, B. T., Deboth, M. T. J. and Fish, N. 1987. Electrofusion and electroporation of crop plant protoplasts.

Chromosome variation in regenerated plants.

G - Articles in popular magazines and other technical publications

Karp, A. 1987. Chromosome variation in regenerated plants.

A study on the effect of different initial culture media on chromosome stability of Solanum tuberosum cv. Maris Bard protoplast derived regenerants.

G - Articles in popular magazines and other technical publications

Fish, N. and Karp, A. 1987. A study on the effect of different initial culture media on chromosome stability of Solanum tuberosum cv. Maris Bard protoplast derived regenerants.

Isolation, culture and morphogenesis from wheat protoplasts and study of expression of DNA constructs by direct gene transfer.

G - Articles in popular magazines and other technical publications

Lee, B. T., Murdoch, K., Topping, J., Deboth, M. T. J., Wu, Q. S., Karp, A., Steele, S., Symonds,C., Kreis, M. and Jones, M. G. K. 1987. Isolation, culture and morphogenesis from wheat protoplasts and study of expression of DNA constructs by direct gene transfer.

Improved isolation of dihaploid solanum tubersoum protoplasts and the production of somatic hybrids between dihaploid S. tuberosum and S. brevidens

A - Papers appearing in refereed journals

Fish, N., Karp, A. and Jones, M. G. K. 1987. Improved isolation of dihaploid solanum tubersoum protoplasts and the production of somatic hybrids between dihaploid S. tuberosum and S. brevidens. In Vitro Cellular and Developmental Biology Animal. 23 (8), pp. 575-580. https://doi.org/10.1007/BF02620975

Ploidy variation in Solanum brevidens plants regenerated from protoplasts using an improved culture system

A - Papers appearing in refereed journals

Nelson, R. S., Karp, A. and Bright, S. W. J. 1986. Ploidy variation in Solanum brevidens plants regenerated from protoplasts using an improved culture system. Journal of Experimental Botany. 37 (175), pp. 253-261. https://doi.org/10.1093/jxb/37.2.253

Genetic manipulation in potato.

G - Articles in popular magazines and other technical publications

Ooms, G., Burrell, M. M., Karp, A., Twell, D. and Roberts, J. 1986. Genetic manipulation in potato.

Mutation and tissue culture.

G - Articles in popular magazines and other technical publications

Bright, S. W. J., Ooms, G., Foulger, D., Karp, A. and Evans, N. 1986. Mutation and tissue culture.

Genetic manipulation in potato with Agrobacterium rhizogenes

A - Papers appearing in refereed journals

Ooms, G., Bossen, M. E., Burrell, M. M. and Karp, A. 1986. Genetic manipulation in potato with Agrobacterium rhizogenes. Potato research. 29 (3), pp. 367-379. https://doi.org/10.1007/bf02359965

Improvements in regeneration from protoplasts of potato and studies on chromosome stability. 1. The effect of initial culture media

A - Papers appearing in refereed journals

Fish, N. and Karp, A. 1986. Improvements in regeneration from protoplasts of potato and studies on chromosome stability. 1. The effect of initial culture media. Theoretical and Applied Genetics. 72 (3), pp. 405-412. https://doi.org/10.1007/bf00288580

Biotechnology's potential for crop improvement.

G - Articles in popular magazines and other technical publications

Bright, S. W. J., Jones, M. G. K., Ooms, G., Maddock, S. E., Karp, A., Foulger, D. and Miflin, B. J. 1986. Biotechnology's potential for crop improvement.

Chromosome variation in regenerated plants.

G - Articles in popular magazines and other technical publications

Karp, A. 1986. Chromosome variation in regenerated plants.

Cellular engineering by gamma fusion and egg transformation : recent experimental data and applications in plant breeding.

G - Articles in popular magazines and other technical publications

Famaeler, I., Cammaerts, D., Karp, A., Sidorov, V., De Brouwer, D., Negrutiu, I. and Jacobs, M. 1986. Cellular engineering by gamma fusion and egg transformation : recent experimental data and applications in plant breeding.

Chromosome variation in plants regenerated from protoplasts and cultured plant tissues.

G - Articles in popular magazines and other technical publications

Karp, A. 1986. Chromosome variation in plants regenerated from protoplasts and cultured plant tissues.

Cellular engineering by means of gamma fusion : genetic variation in fusion products.

G - Articles in popular magazines and other technical publications

Famaeler, I., Karp, A., Sidorov, V., Negrutiu, I., Cammaerts, D. and Jacobs, M. 1986. Cellular engineering by means of gamma fusion : genetic variation in fusion products.

Protoplast fusion of Solanum species.

G - Articles in popular magazines and other technical publications

Foulger, D., Fish, N., Karp, A., Bains, A., Cooper-Bland, S., Bright, S. W. J. and Jones, M. G. K. 1986. Protoplast fusion of Solanum species.

Introducing genetics

E - Books edited/written by staff member, alone/with others

Jones, R. N. and Karp, A. 1986. Introducing genetics. London John Murray.

Plant tissue culture technology and crop improvement

B - Book chapters etc edited externally

Jones, M. G. K. and Karp, A. 1985. Plant tissue culture technology and crop improvement. in: Mizrahi, A. and van Wezel, A. L. (ed.) Advances in Biotechnological Processes: Volume 5 New York Alan R. Liss, Inc.. pp. 91-121

Shoot formation from explant cultures of fourteen potato cultivars and studies of the cytology and morphology of regenerated plants

A - Papers appearing in refereed journals

Wheeler, V. A., Evans, N. E., Foulger, D., Webb, K. J., Karp, A., Franklin, J. and Bright, S. W. J. 1985. Shoot formation from explant cultures of fourteen potato cultivars and studies of the cytology and morphology of regenerated plants. Annals of Botany. 55 (3), pp. 309-320. https://doi.org/10.1093/oxfordjournals.aob.a086907

Agriculture Group Symposium. Potential Impact of Biotechnology upon Agriculture: Novel Ways of Manipulating Plants

A - Papers appearing in refereed journals

Miflin, B. J., Jones, M. G. K., Ooms, G., Karp, A., Maddock, S. E. and Bright, S. W. J. 1985. Agriculture Group Symposium. Potential Impact of Biotechnology upon Agriculture: Novel Ways of Manipulating Plants. Journal of the Science of Food and Agriculture. 36 (8), pp. 651-652. https://doi.org/10.1002/jsfa.2740360805

Karyotypic changes in potato plants regenerated from protoplasts

A - Papers appearing in refereed journals

Creissen, G. P. and Karp, A. 1985. Karyotypic changes in potato plants regenerated from protoplasts. Plant Cell, Tissue and Organ Culture. 4 (2), pp. 171-182. https://doi.org/10.1007/bf00042275

On the causes and origins of somaclonal variation

B - Book chapters etc edited externally

Karp, A. and Bright, S. W. J. 1985. On the causes and origins of somaclonal variation. in: Miflin, B. J. (ed.) Oxford Surveys of Plant Molecular and Cell Biology: Volume 2 Oxford Oxford University Press (OUP). pp. 199-234

Expression of shoot-inducing Ti TL-DNA in differentiated tissues of potato (Solanum tuberosum cv Maris Bard)

A - Papers appearing in refereed journals

Burrell, M. M., Twell, D., Karp, A. and Ooms, G. 1985. Expression of shoot-inducing Ti TL-DNA in differentiated tissues of potato (Solanum tuberosum cv Maris Bard). Plant Molecular Biology. 5 (4), pp. 213-222. https://doi.org/10.1007/bf00020639

Genetic manipulation in cultivars of oilseed rape (Brassica napus) using Agrobacterium

A - Papers appearing in refereed journals

Ooms, G., Bains, A., Burrell, M., Karp, A., Twell, D. and Wilcox, E. 1985. Genetic manipulation in cultivars of oilseed rape (Brassica napus) using Agrobacterium. Theoretical and Applied Genetics. 71, pp. 325-329.

Genetic modification of potato development using Ri T-DNA

A - Papers appearing in refereed journals

Ooms, G., Karp, A., Burrell, M. M., Twell, D. and Roberts, J. 1985. Genetic modification of potato development using Ri T-DNA. Theoretical and Applied Genetics. 70, pp. 440-446.

Chromosome doubling in monohaploid and dihaploid potatoes by regeneration from cultured leaf explants

A - Papers appearing in refereed journals

Karp, A., Risiott, R., Jones, M. G. K. and Bright, S. W. J. 1984. Chromosome doubling in monohaploid and dihaploid potatoes by regeneration from cultured leaf explants. Plant Cell, Tissue and Organ Culture. 3 (4), pp. 363-373. https://doi.org/10.1007/bf00043089

Chromosome variation in wheat plants regenerated from cultured immature embryos

A - Papers appearing in refereed journals

Karp, A. and Maddock, S. E. 1984. Chromosome variation in wheat plants regenerated from cultured immature embryos. Theoretical and Applied Genetics. 67 (2-3), pp. 249-255. https://doi.org/10.1007/bf00317047

From tumor to tuber; tumor cell characteristics and chromosome numbers of crown gall-derived tetraploid potato plants (Solanum tuberosum cv. 'Maris Bard')

A - Papers appearing in refereed journals

Ooms, G., Karp, A. and Roberts, J. 1983. From tumor to tuber; tumor cell characteristics and chromosome numbers of crown gall-derived tetraploid potato plants (Solanum tuberosum cv. 'Maris Bard'). Theoretical and Applied Genetics. 66 (2), pp. 169-172. https://doi.org/10.1007/BF00265193

Cytogenetics of Lolium perenne. Part 2: Chiasma distribution in inbred lines

A - Papers appearing in refereed journals

Karp, A. and Jones, R. N. 1983. Cytogenetics of Lolium perenne. Part 2: Chiasma distribution in inbred lines. Theoretical and Applied Genetics. 64 (2), pp. 137-145. https://doi.org/10.1007/bf00272721

Cytogenetics of Lolium perenne. Part 3: Correlation between chiasmata and u-type exchange

A - Papers appearing in refereed journals

Karp, A. and Jones, R. N. 1983. Cytogenetics of Lolium perenne. Part 3: Correlation between chiasmata and u-type exchange. Theoretical and Applied Genetics. 65 (2), pp. 149-156. https://doi.org/10.1007/bf00264883

The effects of nucleotype and genotype upon pollen grain development in Hyacinth and Scilla

A - Papers appearing in refereed journals

Karp, A., Rees, H. and Jewell, A. W. 1982. The effects of nucleotype and genotype upon pollen grain development in Hyacinth and Scilla. Heredity. 48 (APR), pp. 251-261. https://doi.org/10.1038/hdy.1982.30

Chromosome variation in protoplast-derived potato plants

A - Papers appearing in refereed journals

Karp, A., Nelson, R. S., Thomas, E. and Bright, S. W. J. 1982. Chromosome variation in protoplast-derived potato plants. Theoretical and Applied Genetics. 63 (3), pp. 265-272. https://doi.org/10.1007/bf00304006

Cytogenetics Of Lolium perenne. Part 1: Chiasma frequency variation in inbred lines

A - Papers appearing in refereed journals

Karp, A. and Jones, R. N. 1982. Cytogenetics Of Lolium perenne. Part 1: Chiasma frequency variation in inbred lines. Theoretical and Applied Genetics. 62 (2), pp. 177-183. https://doi.org/10.1007/bf00293355

Variation in chiasma distribution in inbred perennial ryegrass

A - Papers appearing in refereed journals

Karp, A. and Jones, R. N. 1981. Variation in chiasma distribution in inbred perennial ryegrass. Heredity. 47 (AUG), pp. 152-152. https://doi.org/10.1038/hdy.1981.71