Dan Smith

NameDan Smith
Job titleSenior Scientific Specialist - Senior Bioinformatics Scientist
Email addressdan.smith@rothamsted.ac.uk
DepartmentIntelligent Data Ecosystems
ORCIDhttps://orcid.org/0000-0003-3158-3969
OfficeHarpenden

Research outputs

Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum)

Blyth, H. R., Zarsav, A., Smith, D., Kanyuka, K., Hassall, K. L., Michaelson, L. V., Rudd, J. J. and Haslam, R. P. 2024. Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum) . 32nd Fungal Genetics Conference. Asilomar Conference Grounds, Pacific Grove, CA 12 Mar 2024

The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)

Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193

Identification and functional characterisation of a locus for target site integration in Fusarium graminearum

Darino, M., Urban, M., Kaur, N., Wood, A. K. M., Smith, D., Grimwade-Mann, M., Beacham, A. and Hammond-Kosack, K. E. 2024. Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology. 11 (2), pp. 1-21. https://doi.org/10.1186/s40694-024-00171-8

Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor

Blyth, H., Smith, D., King, R., Bayon, C., Ashfield, T., Walpole, H., Venter, E., Kanyuka, K. and Rudd, J. J. 2023. Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor. Frontiers in Plant Science. 14, p. 1140824. https://doi.org/10.3389/fpls.2023.1140824

Genetic control of grain amino acid composition in a UK soft wheat mapping population

Oddy, J., Chhetry, M., Awal, R., Addy, J., Wilkinson, M. D., Smith, D., King, R., Hall, C., Testa, R., Murray, E., Raffan, S., Curtis, T. Y., Wingen, L., Griffiths, S., Berry, S., Elmore, S. J., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Genetic control of grain amino acid composition in a UK soft wheat mapping population. The Plant Genome. 16 (4), p. e20335. https://doi.org/10.1002/tpg2.20335

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2023. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. BMC Biology. 21, p. 24. https://doi.org/10.1186/s12915-023-01520-6

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90

In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles

Davey, S. D., Chalmers, I. W., Fernandez-Fuentes, N., Swain, M. T., Smith, D., Abbas Abidi, S. M., Saifullah, M. K., Raman, M., Ravikumar, G., McVeigh, P., Maule, A. G., Brophy, P. M. and Morphew, R. M. 2022. In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles. Molecular Omics. 1. https://doi.org/10.1039/D1MO00254F

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