Intelligent Data Ecosystems
| Title | Intelligent Data Ecosystems |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Baker |
| Executive Assistant | Sally Murdoch |
Outputs
Sort by: Date Title
GIBBERELLIN 3-OXIDASE genes regulate height and grain size in bread wheat
A - Papers appearing in refereed journals
Phillips, A. L., Huttly, A. K., Alarcon-Reverte, R., Clark, S. J., Jaworek, P., Tarkowska, D., Sokolowska, P., Steele, D., Riche, A. B., Hawkesford, M. J., Thomas, S., Hedden, P. and Pearce, S. 2025. GIBBERELLIN 3-OXIDASE genes regulate height and grain size in bread wheat. Journal of Experimental Botany. p. efa151. https://doi.org/10.1093/jxb/eraf151
Putting numbers to a metaphor: A Bayesian Belief Network with which to infer Soil Quality and Health
A - Papers appearing in refereed journals
Hassall, K. L., Zawadzka, J., Milne, A. E., Corstanje, R., Harris, J. A., Dailey, A. G., Keith, A. M., Glendining, M. J., McGrath, S. P., Todman, L. C., Alexander, P., Arnold, P., Bennett, A. J., Bhogal, A., Clark, J. M., Crotty, F. V., Horrocks, C., Noble, N., Rees, R., Shepherd, M., Stockdale, E. A., Tipping, E. W. and Whitmore, A. P. 2025. Putting numbers to a metaphor: A Bayesian Belief Network with which to infer Soil Quality and Health. European Journal of Agronomy. 168 (July), p. 127537. https://doi.org/10.1016/j.eja.2025.127537
The Fusarium graminearum effector protease FgTPP1 suppresses immune responses and facilitates Fusarium Head Blight Disease
A - Papers appearing in refereed journals
Darino, M., Jaiswal, N., Darma, R., Kroll, E., Urban, M., Xiang, Y., Kim, H., Myers, A., Scofield, S., Innes, R. W., Hammond-Kosack, K. E. and Helm, M. 2025. The Fusarium graminearum effector protease FgTPP1 suppresses immune responses and facilitates Fusarium Head Blight Disease. Molecular Plant-Microbe Interactions - MPMI. (24 January). https://doi.org/10.1094/MPMI-08-24-0103-FI
A conserved fungal Knr4/Smi1 protein is crucial for maintaining cell wall stress tolerance and host plant pathogenesis
A - Papers appearing in refereed journals
Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2025. A conserved fungal Knr4/Smi1 protein is crucial for maintaining cell wall stress tolerance and host plant pathogenesis. PLOS Pathogens. 21 (1), p. e1012769. https://doi.org/10.1371/journal.ppat.1012769
Towards A Framework For Farm Scale Digital Twin
B - Book chapters etc edited externally
Fakeye, I., Maas, E, Harris, P., Oulaid, B. and Baker, C. 2024. Towards A Framework For Farm Scale Digital Twin. in: MODELS Companion '24: Proceedings of the ACM/IEEE 27th International Conference on Model Driven Engineering Languages and Systems Association for Computing Machinery. pp. 486-491
A computationally efficient algorithm to leverage average information REML for (co)variance component estimation in the genomic era
A - Papers appearing in refereed journals
Stranden, I., Mantysaari, E. A., Lidauer, M. H., Thompson, R. and Gao, H. 2024. A computationally efficient algorithm to leverage average information REML for (co)variance component estimation in the genomic era. Genetics Selection Evolution. 56, p. 73. https://doi.org/10.1186/s12711-024-00939-x
A Moroccan soil spectral library use framework for improving soil property prediction: Evaluating a geostatistical approach
A - Papers appearing in refereed journals
Gashaw-Asrat, T., Breure, T., Sakrabani, R., Corstanje, R., Hassall, K. L., Hamma, A., Kebede, F. and Haefele, S. M. 2024. A Moroccan soil spectral library use framework for improving soil property prediction: Evaluating a geostatistical approach. Geoderma. 452 (December), p. 117116. https://doi.org/10.1016/j.geoderma.2024.117116
Long-term effects of lime and phosphorus application on soil extractable (Olsen) phosphorus differ between two arable UK soils
A - Papers appearing in refereed journals
White, R. P., Haefele, S. M., Goulding, K. W. T., McGrath, S. P. and Glendining, M. J. 2024. Long-term effects of lime and phosphorus application on soil extractable (Olsen) phosphorus differ between two arable UK soils. Soil Use and Management. 40 (4), p. e13160. https://doi.org/10.1111/sum.13160
Loss of trace elements from agricultural soil
A - Papers appearing in refereed journals
Comber, S. D. W, Schindler, R. J., Blackwell, M. S. A. and Darch, T. 2024. Loss of trace elements from agricultural soil. Environmental Technology. https://doi.org/10.1080/09593330.2024.2423907
Management choices in cereal production: Lessons from the Broadbalk Long-term trial
A - Papers appearing in refereed journals
Poulton, P. R., Powlson, D. S., Gregory, A. S., Glendining, M. J., White, R. P., Clark, S. J., Wilmer, W. S., Macdonald, A. J. and Johnston, A. E. 2024. Management choices in cereal production: Lessons from the Broadbalk Long-term trial. Proceedings of the International Fertiliser Society. 891, pp. 1-60. https://doi.org/10.23637/rothamstedlong-term-experiments-guide-2018
Validating a cassava production spatial disaggregation model in sub-Saharan Africa
A - Papers appearing in refereed journals
Hassall, K. L., Alonso Chavez, V., Sint, H. M., Helps, J., Abidrabo, P., Okao-Okuja, G., Eboulem, R. G., Amoakon, W. J., Otron, D. H. and Szyniszewska, A. 2024. Validating a cassava production spatial disaggregation model in sub-Saharan Africa. PLOS ONE. https://doi.org/10.1371/journal.pone.0312734
Swarming insects may have finely tuned characteristic Reynolds numbers
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Swarming insects may have finely tuned characteristic Reynolds numbers. Biomimetics. 9 (11), p. 660. https://doi.org/10.3390/biomimetics9110660
Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat
A - Papers appearing in refereed journals
Srivastava, M., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.24. https://doi.org/10.1094/MPMI-37-5-S1.1
Corrigendum to “Yield responses of arable crops to liming – An evaluation of relationships between yields and soil pH from a long-term liming experiment” [Eur. J. Agron. 105 (2019) 176–188]
A - Papers appearing in refereed journals
Holland, J. E., White, P. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2024. Corrigendum to “Yield responses of arable crops to liming – An evaluation of relationships between yields and soil pH from a long-term liming experiment” [Eur. J. Agron. 105 (2019) 176–188]. European Journal of Agronomy. 159 (Sept), p. 127221. https://doi.org/10.1016/j.eja.2024.127221
Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis
N - Datasets
Kroll, E., Bayon, C., Rudd, J. J., Armer, V., Magaji-Umashankar, A., Ames, R., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2024. Data from: A conserved fungal Knr4/Smi1 protein is vital for maintaining cell wall integrity and host plant pathogenesis. Rothamsted Research. https://doi.org/10.23637/rothamsted.99163
Spatial correlations in laboratory insect swarms
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Spatial correlations in laboratory insect swarms. Journal of the Royal Society Interface. 21 (216), p. 20240450. https://doi.org/10.1098/rsif.2024.0450
The role of ruminant urine and faeces in the recycling of nutrients by forages
A - Papers appearing in refereed journals
Kao, P., McGrath, S. P., Buss, H. L., Darch, T., Warren, H. E., Mcauliffe, G., Cardenas, L. M., Blackwell, M. S. A. and Lee, M. R. F. 2024. The role of ruminant urine and faeces in the recycling of nutrients by forages. Scientific Reports. 14, p. 16007. https://doi.org/10.1038/s41598-024-66648-z
Identifying pathways to more sustainable farming using archetypes and Multi-Objective Optimisation
A - Papers appearing in refereed journals
Butikofer, L., Goodwin, C. E., Varma, V., Evans, P. M., Redhead, J. W., Bullock, J. M., Pywell, R. F., Mead, A., Richter, G. M. and Storkey, J. 2024. Identifying pathways to more sustainable farming using archetypes and Multi-Objective Optimisation. Ecological Indicators. 166 (sept), p. 112433. https://doi.org/10.1016/j.ecolind.2024.112433
Sensitivities in associating land-system archetypes with sustainability metrics Insights from simulations
A - Papers appearing in refereed journals
Varma, V., Evans, P. M., Butikofer, L., Goodwin C. E. D., Pywell, R. F., Redhead, J. W., Storkey, J., Bullock, J. M. and Mead, A. 2024. Sensitivities in associating land-system archetypes with sustainability metrics Insights from simulations. bioRxiv. https://doi.org/10.1101/2024.08.01.606212v1
The differential assimilation of nitrogen fertilizer compounds by soil microorganisms
A - Papers appearing in refereed journals
Charteris, A., Knowles, T. D. J., Mead, A., Reay, M. K., Michaelides, K. and Evershed, R. P. 2024. The differential assimilation of nitrogen fertilizer compounds by soil microorganisms . FEMS Microbiology Letters. 371, p. fnae041. https://doi.org/10.1093/femsle/fnae041
Development of inoculation methods for Pythium violae to evaluate resistance of carrot cultivars and efficacy of crop protection products for cavity spot control
A - Papers appearing in refereed journals
Pereira, N., Hales, K. R., Mead, A., Chappell, L. H. K., Barker, G. C. and Clarkson, J. P. 2024. Development of inoculation methods for Pythium violae to evaluate resistance of carrot cultivars and efficacy of crop protection products for cavity spot control. Plant Pathology. https://doi.org/10.1111/ppa.13967
An introduction to conducting responsible and reproducible agricultural research
A - Papers appearing in refereed journals
Sichinga-Ligowe, I., Joy, E., Kangara, G., Pino-Chandia, L., Rivero, M. J., Devkota, M. W., Broadley, M., Haefele, S. M. and McGrath, S. P. 2024. An introduction to conducting responsible and reproducible agricultural research. CABI Reviews. 19 (1). https://doi.org/10.1079/cabireviews.2024.0058
A Bayesian approach to analyzing long-term agricultural experiments
A - Papers appearing in refereed journals
Addy, J., Maclaren, C. and Lang, R. 2024. A Bayesian approach to analyzing long-term agricultural experiments . European Journal of Agronomy. 159 (Sept), p. 127227. https://doi.org/10.1016/j.eja.2024.127227
Navigating the Fusarium species complex: Host-range plasticity and genome variations
A - Papers appearing in refereed journals
Armer, V., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Navigating the Fusarium species complex: Host-range plasticity and genome variations. Fungal Biology. 128 (8B), pp. 2439-2459. https://doi.org/10.1016/j.funbio.2024.07.004
Spatial Variation in the Integrated Assessment of Pasture Dynamics and Soil Health on the North Wyke Farm Platform
N - Datasets
Yan, J., Ye, H., Le-Grice, P., Beaumont, D. A., Darch, T. and Hodge, J. A. 2024. Spatial Variation in the Integrated Assessment of Pasture Dynamics and Soil Health on the North Wyke Farm Platform. Rothamsted Research. https://doi.org/10.23637/rothamsted.990y5
Using long-term experiments to assess statistical models for determining critical P fertilisation thresholds
A - Papers appearing in refereed journals
Jordan-Meille, L., Mollier, A., Poulton, P. R., Glendining, M. J., Jouany, C., Gratecap, J. -., Hanocq, D., Montagnier, C. and Denoroy, P. 2024. Using long-term experiments to assess statistical models for determining critical P fertilisation thresholds. European Journal of Agronomy. 158 (August), p. 127220. https://doi.org/10.1016/j.eja.2024.127220
Why insect swarms seem unduly complicated
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Why insect swarms seem unduly complicated. European Physical Journal Plus. 139, p. 610. https://doi.org/10.1140/epjp/s13360-024-05401-x
Future proofing a long-term agricultural experiment for decades to come - Relocation and redesign
A - Papers appearing in refereed journals
Watson, C. A., Topp, C. F. E., Mead, A., Fraser, F., Fernandez-Huarte, M., Horne, J., Paton, G. I., Hallett, P. D., Norton, G., Graham, R. I. and Walker, R. L. 2024. Future proofing a long-term agricultural experiment for decades to come - Relocation and redesign. European Journal of Agronomy. 158 (August), p. 127214. https://doi.org/10.1016/j.eja.2024.127214
A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease
A - Papers appearing in refereed journals
Chancellor, T., Smith, D. P., Chen, W., Clark, S. J., Venter, E., Halsey, K., Carrera, E., Mcmillan, V. E., Canning, G., Armer, V., Hammond-Kosack, K. E. and Palma-Guerrero, J. 2024. A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease. Frontiers in Plant Science. 15, p. 1444271. https://doi.org/10.3389/fpls.2024.1444271
Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype
A - Papers appearing in refereed journals
Ndreca, B., Huttly, A. K., Bibi, S., Bayon, C., Lund, G., Ham, J., Alarcon-Reverte, R., Addy, J., Tarkowská, D., Pearce, S., Hedden, P., Thomas, S. G. and Phillips, A. L. 2024. Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype. BMC Plant Biology. 24, p. 384. https://doi.org/10.1186/s12870-024-05098-1
Projecting the Contribution of Provitamin A Maize Biofortification and Other Nutrition Interventions to the Nutritional Adequacy and Cost of Diets in Rural Zimbabwe
A - Papers appearing in refereed journals
Baudron, F., Cairns, J. E., Haefele, S. M., Hassall, K. L., Ndhlela, T., Nyagumbo, I., Kangara, G. and Joy, E. 2024. Projecting the Contribution of Provitamin A Maize Biofortification and Other Nutrition Interventions to the Nutritional Adequacy and Cost of Diets in Rural Zimbabwe. Journal Of Nutrition. 154 (6), pp. 1815-1826. https://doi.org/10.1016/j.tjnut.2024.04.009
Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape
A - Papers appearing in refereed journals
Coston, D. J., Clark, S. J., Breeze, T. D., Field, L. M., Potts, S. G. and Cook, S. M. 2024. Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape. Pest Management Science. 80 (5), pp. 2383-2392. https://doi.org/10.1002/ps.7860
Limited complementarity of functional and taxonomic diversity in Chilean benthic marine invertebrates
A - Papers appearing in refereed journals
Pino-Chandia, L. and Webb, T. J. 2024. Limited complementarity of functional and taxonomic diversity in Chilean benthic marine invertebrates. Diversity and Distributions. p. e13835. https://doi.org/10.1111/ddi.13835
Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum)
Conference poster
Blyth, H. R., Zarsav, A., Smith, D., Kanyuka, K., Hassall, K. L., Michaelson, L. V., Rudd, J. J. and Haslam, R. P. 2024. Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum) . 32nd Fungal Genetics Conference. Asilomar Conference Grounds, Pacific Grove, CA 12 Mar 2024
Stepwise model parametrisation using satellite imagery and hemispherical photography: Tuning AquaCrop sensitive parameters for improved winter wheat yield predictions in semi-arid regions
A - Papers appearing in refereed journals
Oulaid, B., Milne, A. E., Waine, T., Alami, R. E., Rafiqi, M. and Corstanje, R. 2024. Stepwise model parametrisation using satellite imagery and hemispherical photography: Tuning AquaCrop sensitive parameters for improved winter wheat yield predictions in semi-arid regions. Field Crops Research. 309, p. 109327. https://doi.org/10.1016/j.fcr.2024.109327
Soil Map of Rothamsted Estate
N - Datasets
Avery, B. W., Catt, J. A., Coleman, K., Pino-Chandia, L. and Ostler, R. 2024. Soil Map of Rothamsted Estate. Rothamsted Research. https://doi.org/10.23637/rothamsted.98z89
Identification and functional characterisation of a locus for target site integration in Fusarium graminearum
A - Papers appearing in refereed journals
Darino, M., Urban, M., Kaur, N., Wood, A. K. M., Smith, D., Grimwade-Mann, M., Beacham, A. and Hammond-Kosack, K. E. 2024. Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology. 11 (2), pp. 1-21. https://doi.org/10.1186/s40694-024-00171-8
The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years
A - Papers appearing in refereed journals
Poulton, P. R., Johnston, A. E., Glendining, M. J., White, R. P., Gregory, A. S., Clark, S. J., Gregory, W., Macdonald, A. J. and Powlson, D. S. 2024. The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years. Advances in Agronomy. 184, pp. 173-298. https://doi.org/10.1016/bs.agron.2023.11.003
Why do we make changes to the long-term experiments at Rothamsted?
A - Papers appearing in refereed journals
Poulton, P. R., Powlson, D. S., Glendining, M. J. and Gregory, A. S. 2024. Why do we make changes to the long-term experiments at Rothamsted? European Journal of Agronomy. 154 (March), p. 127062. https://doi.org/10.1016/j.eja.2023.127062
The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)
A - Papers appearing in refereed journals
Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193
People
- Abrare, Sadik
- Asatillaev, Sardor
- Baker, Chris
- Beard, Nik
- Brandizi, Marco
- Castells, Nathalie
- Clark, Suzanne
- Darch, Tegan
- De-Klerk, Arne
- Dillon, Jennifer
- Doran, Pamela
- Dudley, Ryan
- Edwins, Simon
- Espino, Apple
- Fakeye, Ireoluwa
- Forrester, Andrew
- Glendining, Margaret
- Hassall, Kirsty
- Hassani-Pak, Keywan
- Holegar, Sam
- Hughes, David
- Inegbedion, Grace
- Jimoh, Ibrahim
- Kendall, Kevin
- Kroll, Erika
- Lannan, Lewis
- Leask, Graham
- Low, Harriet
- Maas, Ellen
- Mead, Andrew
- Minea, Constantin
- Morosan, Alexandru
- Nokrach, Churchill
- North, Teri
- Nureldin, Hazem
- Ostler, Richard
- Oulaid, Bader
- Payne, Roger
- Perryman, Sarah
- Pino-Chandia, Loreto
- Rawlings, Chris
- Reilly, Kirsten
- Reilly, Peter
- Reynolds, Andy
- Ross, Gavin
- Saeed, Sana
- Sewpersad, Nikki
- Thompson, Robin
- Tooth, Mark
- Vijayakumar-Ram, Gokul
- Warr, Alex
- Webb, Philip
- Winfield, Oliver