Intelligent Data Ecosystems

TitleIntelligent Data Ecosystems
TypeScience Department
InstituteRothamsted Research
HeadChris Baker
Executive AssistantSally Murdoch

Outputs

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The value of volunteer surveillance for the early detection of biological invaders

A - Papers appearing in refereed journals
Van Den Bosch, F., McRoberts, N., Bourhis, Y., Parnell, S. and Hassall, K. L. 2023. The value of volunteer surveillance for the early detection of biological invaders. Journal of Theoretical Biology. 560, p. 111385. https://doi.org/10.1016/j.jtbi.2022.111385

Evidence of collaborative opportunities to ensure long-term sustainability in African farming

A - Papers appearing in refereed journals
El-Fartassi, I., Milne, A. E., El Alami, R., Rafiqi, M., Hassall, K. L., Waine, T., Zawadzka, J., Diarra, A. and Corstanje, R. 2023. Evidence of collaborative opportunities to ensure long-term sustainability in African farming. Journal of Cleaner Production. 392, p. 136170. https://doi.org/10.1016/j.jclepro.2023.136170

The complete genome assemblies of 19 insect pests of worldwide importance to agriculture

A - Papers appearing in refereed journals
King, R., Buer, B., Davies, T. G. E., Ganko, E., Guest, M., Hassani-Pak, K., Hughes, D. J., Raming, K., Rawlings, C. J., Williamson, M. S., Crossthwaite, A., Nauen, R. and Field, L. M. 2023. The complete genome assemblies of 19 insect pests of worldwide importance to agriculture. Pesticide Biochemistry and Physiology. 191, p. 105339. https://doi.org/10.1016/j.pestbp.2023.105339

Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.

A - Papers appearing in refereed journals
Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.14026

Stochasticity may generate coherent motion in bird flocks

A - Papers appearing in refereed journals
Reynolds, A. M. 2023. Stochasticity may generate coherent motion in bird flocks . Physical Biology. 20 (2), p. 025002. https://doi.org/10.1088/1478-3975/acbad7

Swarm formation as backward diffusion

A - Papers appearing in refereed journals
Reynolds, A. M. and Ouellette, N. T. 2023. Swarm formation as backward diffusion. Physical Biology. 20 (2), p. 026002. https://doi.org/10.1088/1478-3975/acb986

Performance and enteric methane emissions from housed beef cattle fed silage produced on pastures with different forage profiles

A - Papers appearing in refereed journals
Meo-Filho, P., Hood, J., Lee, M. R. F., Fleming, H. R., Elayadeth-Meethal, M. and Misselbrook, T. H. 2023. Performance and enteric methane emissions from housed beef cattle fed silage produced on pastures with different forage profiles. Animal. p. 100726. https://doi.org/10.1016/j.animal.2023.100726

The uptake of selenium by perennial ryegrass in soils of different organic matter contents receiving sheep excreta

A - Papers appearing in refereed journals
Kao, P-T., Buss, H. L., McGrath, S. P., Darch, T., Warren, H. E. and Lee, M. R. F. 2023. The uptake of selenium by perennial ryegrass in soils of different organic matter contents receiving sheep excreta. Plant and Soil. https://doi.org/10.1007/s11104-023-05898-8

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

A - Papers appearing in refereed journals
Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2023. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. BMC Biology. 21, p. 24. https://doi.org/10.1186/s12915-023-01520-6

Water chemistry of combined surface and subsurface runoff from the North Wyke Farm Platform, with hydrologically isolated catchments sown with different pasture types.

N - Datasets
Granger, S. J., Quincke, J. A., Carswell, A. M., Olde, L., Darch, T., Peukert, S., Horrocks, C. A., Dixon, E. R., Collins, A. L., Blackwell, M. S. A., Murray, P. J., Dungait, J. A. J. and Harris, P. 2023. Water chemistry of combined surface and subsurface runoff from the North Wyke Farm Platform, with hydrologically isolated catchments sown with different pasture types. Rothamsted Research. https://doi.org/10.23637/rothamsted.98v27

Movement of micro- and macronutrients from sheep excreta to grass and leachate via soil

N - Datasets
Kao, P-T., Darch, T., Warren, H., McGrath, S. P., Buss, H.L. and Lee, M. R. F. 2023. Movement of micro- and macronutrients from sheep excreta to grass and leachate via soil. Rothamsted Research. https://doi.org/10.23637/rothamsted.98v24

Response of soil health indicators to dung, urine and mineral fertilizer application in temperate pastures

A - Papers appearing in refereed journals
Segura, C., Horrocks, C. A., Lopez-Aizpun, M., Blackwell, M. S. A., Darch, T., Hood, J., Le Cocq, K., McAuliffe, G., Lee, M. R. F. and Cardenas, L. M. 2023. Response of soil health indicators to dung, urine and mineral fertilizer application in temperate pastures. Journal of Environmental Management. 330, p. 117096. https://doi.org/10.1016/j.jenvman.2022.117096

Reducing dietary acrylamide exposure from wheat products through crop management and imaging

A - Papers appearing in refereed journals
Oddy, J., Addy, J., Mead, A., Hall, C., Mackay, C., Ashfield, T., Mcdiarmid, F., Curtis, T. Y., Raffan, S., Wilkinson, M. D., Elmore, J. S., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Reducing dietary acrylamide exposure from wheat products through crop management and imaging. Journal of Agricultural and Food Chemistry - JAFC. 71 (7), pp. 3403-3413. https://doi.org/10.1021/acs.jafc.2c07208

Spaces between insects in laboratory swarms move like insects in natural swarms

A - Papers appearing in refereed journals
Reynolds, A. M. 2023. Spaces between insects in laboratory swarms move like insects in natural swarms. EPL. 141 (1), p. 17001. https://doi.org/10.1209/0295-5075/acab7c

Linking Legacies: Realising the Potential of the Rothamsted Long-Term Agricultural Experiments

B - Book chapters etc edited externally
Ostler, R., Glendining, M. J. and Perryman, S. A. M. 2023. Linking Legacies: Realising the Potential of the Rothamsted Long-Term Agricultural Experiments. in: Williamson, H. F. and Leonelli, S. (ed.) Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development Springer. pp. 125-147

Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype

A - Papers appearing in refereed journals
Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. https://doi.org/10.1038/s43016-022-00671-z

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

A - Papers appearing in refereed journals
Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. Phytopathology. 112 (11), pp. 49-49.

A cold high-pressure system over North China hinders the southward migration of Mythimna separata in autumn

A - Papers appearing in refereed journals
Zhu, J., Chen, X., Liu, J., Jiang, Y., Chen, F., Lu, J., Chen, H., Zhai, B., Reynolds, D. R., Chapman, J. W. and Hu, G. 2022. A cold high-pressure system over North China hinders the southward migration of Mythimna separata in autumn. Movement Ecology. 10, p. 54. https://doi.org/10.1186/s40462-022-00360-3

Multi-tier archetypes to characterise British landscapes, farmland and farming practices

A - Papers appearing in refereed journals
Goodwin, C. E. D., Butikofer, L., Hatfield, J. H., Evans, P. M., Bullock, J. M., Storkey, J., Mead, A., Richter, G. M., Henrys, P. A., Pywell, R. F. and Redhead, J. W. 2022. Multi-tier archetypes to characterise British landscapes, farmland and farming practices. Environmental Research Letters. 17 (9), p. 095002. https://doi.org/10.1088/1748-9326/ac810e

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

N - Datasets
Chen, H., King, R., Smith, D., Bayon, C., Ashfield, T., Torriani, S., Kanyuka, K., Hammond-Kosack, K. E., Bieri, S. and Rudd, J. J. 2022. Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen. Rothamsted Research. https://doi.org/10.23637/rothamsted.98q90

Using cloud radar to investigate the effect of rainfall on migratory insect flight

A - Papers appearing in refereed journals
Wainwright, C. E., Volponi, S. N., Stepanian, P. M., Reynolds, D. R. and Richter, D. H. 2022. Using cloud radar to investigate the effect of rainfall on migratory insect flight. Methods in ecology and evolution. https://doi.org/10.1111/2041-210X.14023

Diversity, composition, altitude, and seasonality of high-altitude windborne migrating mosquitoes in the Sahel: Implications for disease transmission

A - Papers appearing in refereed journals
Yaro, A. S., Linton, Y., Dao, A., Diallo, M., Sanogo, Z. L., Samake, D., Ousman, Y., Kouam, C., Krajacich, B. J., Faiman, R., Bamou, R., Woo, J., Chapman, J. W., Reynolds, D. R. and Lehmann, T. 2022. Diversity, composition, altitude, and seasonality of high-altitude windborne migrating mosquitoes in the Sahel: Implications for disease transmission. Frontiers in Epidemiology. 2, p. 1001782. https://doi.org/10.3389/fepid.2022.1001782

The effect of soil type on yield and micronutrient content of pasture species

A - Papers appearing in refereed journals
Darch, T., Blackwell, M. S. A., Hood, J., Lee, M. R. F., Storkey, J., Beaumont, D. A. and McGrath, S. P. 2022. The effect of soil type on yield and micronutrient content of pasture species. PLOS ONE. 17 (11), p. e0277091. https://doi.org/10.1371/journal.pone.0277091

Quantifying inherent predictability and spatial synchrony in the aphid vector Myzus persicae - field-scale patterns of abundance and regional forecasting error in the UK

A - Papers appearing in refereed journals
Bell, J. R., Clark, S. J., Stevens, M. and Mead, A. 2022. Quantifying inherent predictability and spatial synchrony in the aphid vector Myzus persicae - field-scale patterns of abundance and regional forecasting error in the UK. Pest Management Science. p. 7292. https://doi.org/10.1002/ps.7292

Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis

A - Papers appearing in refereed journals
Phillips, A. L., Vaughan, S., Baker, J., Primavesi, L. F., Patil, A., King, R., Hassani-Pak, K., Kulasekaran, S., Coghill, J., Ward, J. L. and Huttly, A. K. 2022. Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis. Plant Direct. 6 (10), p. e453. https://doi.org/10.1002/pld3.453

Novel molecules and target genes for vegetative heat tolerance in wheat

A - Papers appearing in refereed journals
Rose, T., Wilkinson, M. D., Lowe, C., Xu, J., Hughes, D. J., Hassall, K. L., Hassani-Pak, K., Amberkar, S., Noleto-Dias, C., Ward, J. L. and Heuer, S. 2022. Novel molecules and target genes for vegetative heat tolerance in wheat. Plant Environmental Interactions. 3 (6), pp. 264-289. https://doi.org/10.1002/pei3.10096

Huge spring migrations of insects from the Middle East to Europe - quantifying the migratory assemblage and ecosystem services

A - Papers appearing in refereed journals
Hawkes, W. L. S., Walliker, E., Gao, B., Forster, O., Lacey, K., Doyle, T., Massy, R., Roberts, N. W., Reynolds, D. R., Ozden, O., Chapman, J. W. and Wotton, K. R. 2022. Huge spring migrations of insects from the Middle East to Europe - quantifying the migratory assemblage and ecosystem services. Ecography. 10, p. e06288. https://doi.org/10.1111/ecog.06288

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

Conference poster
Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. APS AGM - Plant Health 2022. Pittsburgh, Pennsylvania, USA 06 Aug 2022

The effect of soil type on yield and macro- and micronutrient content of a wide range of pasture species

N - Datasets
Darch, T., Blackwell, M. S. A., Hood, J., Lee, M. R. F., Storkey, J., Beaumont, D. A. and McGrath, S. P. 2022. The effect of soil type on yield and macro- and micronutrient content of a wide range of pasture species. Rothamsted Research. https://doi.org/10.23637/rothamsted.989q8

Elemental concentrations and growth characteristics of wild-type and cultivated varieties of pasture species

N - Datasets
Darch, T., McGrath, S. P., Lee, M. R. F., Beaumont, D. A., Blackwell, M. S. A., Horrocks, C. A., Hood, J. and Storkey, J. 2022. Elemental concentrations and growth characteristics of wild-type and cultivated varieties of pasture species. Rothamsted Research. https://doi.org/10.23637/rothamsted.989q7

Individual tracking reveals long-distance flight-path control in a nocturnally migrating moth

A - Papers appearing in refereed journals
Menz, M. H. M., Scacco, M., Burki-Spycher, H-M., Williams, H. J., Reynolds, D. R., Chapman, J. W. and Wikelski, M. 2022. Individual tracking reveals long-distance flight-path control in a nocturnally migrating moth. Science - AAAS. 377 (6607), pp. 764-768. https://doi.org/10.1126/science.abn1663

Comment on ‘A physics perspective on collective animal behavior’ 2022 Phys. Biol. 19 021004

A - Papers appearing in refereed journals
Reynolds, A. M. 2022. Comment on ‘A physics perspective on collective animal behavior’ 2022 Phys. Biol. 19 021004. Physical Biology. 19 (6), p. 068001. https://doi.org/10.1088/1478-3975/ac8fd5

A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades

A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R. H., MacLaren, C., Macdonald, A. J., Semenov, M. A. and Mead, A. 2022. A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Journal of the Royal Society Interface. 19 (193), p. 20220361. https://doi.org/10.1098/rsif.2022.0361

The distribution of covert microbial natural enemies of a globally invasive crop pest, fall armyworm, in Africa: Enemy release and spillover events

A - Papers appearing in refereed journals
Withers, A., Rice, A., De Boer, J., Donkersley, P., Pearson, A. J., Chipabika, G., Karangwa, P., Uzayisenga, B., Mensah, B. A., Mensah, S. A., Nkunika, P. O. Y., Kachigamba, D., Smith, J. A., Jones, C. M. and Wilson, K. 2022. The distribution of covert microbial natural enemies of a globally invasive crop pest, fall armyworm, in Africa: Enemy release and spillover events. Journal of Animal Ecology. 91 (9), pp. 1826-1841. https://doi.org/10.1111/1365-2656.13760

Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments

C2 - Non-edited contributions to conferences
Mead, A., MacLaren, C. and Storkey, J. 2022. Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022 International Biometric Society.

Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data

C2 - Non-edited contributions to conferences
Addy, J., Mead, A., Macdonald, A. J., Semenov, M. A. and Ellis, R. H. 2022. Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022

Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration

A - Papers appearing in refereed journals
Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 190 (2), pp. 1365-1383. https://doi.org/10.1093/plphys/kiac245

Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xx

GrazeMore - milk yield data

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - milk yield data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xw

GrazeMore - grazing intake data

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing intake data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xv

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