Intelligent Data Ecosystems

TitleIntelligent Data Ecosystems
TypeScience Department
InstituteRothamsted Research
HeadChris Baker
Executive AssistantSally Murdoch

Outputs

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Huge spring migrations of insects from the Middle East to Europe: quantifying the migratory assemblage and ecosystem services

A - Papers appearing in refereed journals
Hawkes, W. L. S., Walliker, E., Gao, B., Forster, O., Lacey, K., Doyle, T., Massy, R., Roberts, N. W., Reynolds, D. R., Ozden, O., Chapman, J. W. and Wotton, K. R. 2022. Huge spring migrations of insects from the Middle East to Europe: quantifying the migratory assemblage and ecosystem services. Ecography. p. e06288. https://doi.org/10.1111/ecog.06288

The effect of soil type on yield and macro- and micronutrient content of a wide range of pasture species

N - Datasets
Darch, T., Blackwell, M. S. A., Hood, J., Lee, M. R. F., Storkey, J., Beaumont, D. A. and McGrath, S. P. 2022. The effect of soil type on yield and macro- and micronutrient content of a wide range of pasture species. Rothamsted Research. https://doi.org/10.23637/rothamsted.989q8

Elemental concentrations and growth characteristics of wild-type and cultivated varieties of pasture species

N - Datasets
Darch, T., McGrath, S. P., Lee, M. R. F., Beaumont, D. A., Blackwell, M. S. A., Horrocks, C. A., Hood, J. and Storkey, J. 2022. Elemental concentrations and growth characteristics of wild-type and cultivated varieties of pasture species. Rothamsted Research. https://doi.org/10.23637/rothamsted.989q7

Individual tracking reveals long-distance flight-path control in a nocturnally migrating moth

A - Papers appearing in refereed journals
Menz, M. H. M., Scacco, M., Burki-Spycher, H-M., Williams, H. J., Reynolds, D. R., Chapman, J. W. and Wikelski, M. 2022. Individual tracking reveals long-distance flight-path control in a nocturnally migrating moth. Science - AAAS. 377 (6607), pp. 764-768. https://doi.org/10.1126/science.abn1663

A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades

A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R. H., MacLaren, C., Macdonald, A. J., Semenov, M. A. and Mead, A. 2022. A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Journal of the Royal Society Interface. 19, p. 20220361. https://doi.org/10.1098/rsif.2022.0361

The distribution of covert microbial natural enemies of a globally invasive crop pest, fall armyworm, in Africa: Enemy release and spillover events

A - Papers appearing in refereed journals
Withers, A., Rice, A., De Boer, J., Donkersley, P., Pearson, A. J., Chipabika, G., Karangwa, P., Uzayisenga, B., Mensah, B. A., Mensah, S. A., Nkunika, P. O. Y., Kachigamba, D., Smith, J. A., Jones, C. M. and Wilson, K. 2022. The distribution of covert microbial natural enemies of a globally invasive crop pest, fall armyworm, in Africa: Enemy release and spillover events. Journal of Animal Ecology. https://doi.org/10.1111/1365-2656.13760

Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration

A - Papers appearing in refereed journals
Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 2022 (Kiac245), pp. 1-19. https://doi.org/10.1093/plphys/kiac245

Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xx

GrazeMore - milk yield data

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - milk yield data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xw

GrazeMore - grazing intake data

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing intake data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xv

GrazeMore - grazing activity data

N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing activity data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xq

Reproduction of Figures for: A heteroskedastic model of Park Grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades

N - Datasets
Addy, J. 2022. Reproduction of Figures for: A heteroskedastic model of Park Grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Rothamsted Research. https://doi.org/10.23637/rothamsted.988x5

Micro- and macro-elements in sheep excreta after consumption of feed supplements according to supplement formulation and level

N - Datasets
Kao, P-T., Darch, T., Fleming, H. R., Warren, H., McGrath, S. P., Buss, H. L. and Lee, M. R. F. 2022. Micro- and macro-elements in sheep excreta after consumption of feed supplements according to supplement formulation and level. Rothamsted Research. https://doi.org/10.23637/rothamsted.98883

The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment.

D1 - Technical reports: non-confidential
Johnston, A. E., Poulton, P. R., Macdonald, A. J. and Glendining, M. J. 2022. The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment. https://doi.org/10.23637/wrn3-manag1938-2020-01

Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time

A - Papers appearing in refereed journals
Prout, J. M., Shepherd, K. D., McGrath, S. P., Kirk, G. J. D., Hassall, K. L. and Haefele, S. M. 2022. Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time. Scientific Reports. 12, p. 5162. https://doi.org/10.1038/s41598-022-09101-3

The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil

A - Papers appearing in refereed journals
Barrat, H., Clark, I. M., Evans, J., Chadwick, D. R. and Cardenas, L. M. 2022. The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil. Soil Biology and Biochemistry. 168 (May), p. 108606. https://doi.org/10.1016/j.soilbio.2022.108606

CO2 fluxes from three different temperate grazed pastures using Eddy covariance measurements

A - Papers appearing in refereed journals
Cardenas, L. M., Olde, L., Loick, N., Griffith, B. A., Hill, T., Evans, J., Cowan, N., Segura, C., Sint, H. M., Harris, P., McCalmont, J., Zhu, S., Dobermann, A. and Lee, M. R. F. 2022. CO2 fluxes from three different temperate grazed pastures using Eddy covariance measurements. Science of the Total Environment. 831 (20 July), p. 154819. https://doi.org/10.1016/j.scitotenv.2022.154819

Stochastic modelling of bird flocks – accounting for the cohesiveness of collective motion

A - Papers appearing in refereed journals
Reynolds, A. M., McIvor, G. E., Thornton, A., Yang, P. and Ouellette, N. T. 2022. Stochastic modelling of bird flocks – accounting for the cohesiveness of collective motion. Journal of the Royal Society Interface. 19, p. 20210745. https://doi.org/10.1098/rsif.2021.0745

A Near-Chromosome Level Genome Assembly of the European Hoverfly, Sphaerophoria Rueppellii (Diptera: Syrphidae), and a Comparative Analysis of Insecticide Resistance-Related Gene Families in Hemipteran Crop Pests and Pollinators

A - Papers appearing in refereed journals
Bailey, E., Field, L. M., Rawlings, C. J., King, R., Mohareb, F., Hassani-Pak, K., Hughes, D. J., Williamson, M. S., Ganko, E., Buer, B. and Nauen, R. 2022. A Near-Chromosome Level Genome Assembly of the European Hoverfly, Sphaerophoria Rueppellii (Diptera: Syrphidae), and a Comparative Analysis of Insecticide Resistance-Related Gene Families in Hemipteran Crop Pests and Pollinators. BMC Genomics. 23 (1), p. 198. https://doi.org/10.1186/s12864-022-08436-5

Rothamsted Research PhD Student Symposium 1st and 2nd March 2022 Handbook , Posters

C2 - Non-edited contributions to conferences
Mead, A. 2022. Rothamsted Research PhD Student Symposium 1st and 2nd March 2022 Handbook , Posters.

The potential of fluorescence imaging to distinguish insect pest and non-pest species

A - Papers appearing in refereed journals
Shortall, C. R., Perryman, S. A. M., Halsey, K. and West, J. S. 2022. The potential of fluorescence imaging to distinguish insect pest and non-pest species. Outlooks on Pest Management. 33 (1 February), pp. 13-16(4). https://doi.org/10.1564/v33_feb_05

Exploring the effects of land management change on productivity, carbon and nutrient balance: Application of an Ensemble Modelling Approach to the upper River Taw observatory, UK

A - Papers appearing in refereed journals
Hassall, K. L., Coleman, K., Dixit, P., Granger, S. J., Zhang, Y., Sharp, R., Wu, L., Whitmore, A. P., Richter, G. M., Collins, A. L. and Milne, A. E. 2022. Exploring the effects of land management change on productivity, carbon and nutrient balance: Application of an Ensemble Modelling Approach to the upper River Taw observatory, UK. Science of the Total Environment. 824, p. 153824. https://doi.org/10.1016/j.scitotenv.2022.153824

A comprehensive sugar beet virus yellows model

G - Articles in popular magazines and other technical publications
Bell, J. R. and Mead, A. 2022. A comprehensive sugar beet virus yellows model. British Sugar Beet Review. 90, pp. 12-15.

Functionally characterized arthropod pest and pollinator cytochrome P450s associated with xenobiotic metabolism

A - Papers appearing in refereed journals
Katsavou, E., Riga, M., Ioannidis, P., King, R., Zimmer, C. T. and Vontas, J. 2022. Functionally characterized arthropod pest and pollinator cytochrome P450s associated with xenobiotic metabolism. Pesticide Biochemistry and Physiology. 181 (supp 2), p. 105005. https://doi.org/10.1016/j.pestbp.2021.105005

Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat

A - Papers appearing in refereed journals
Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475

Is it possible to attain the same soil organic matter content in arable agriculture soils as under natural vegetation?

A - Papers appearing in refereed journals
Powlson, D. S., Poulton, P. R., Glendining, M. J., Macdonald, A. J. and Goulding, K. W. T. 2022. Is it possible to attain the same soil organic matter content in arable agriculture soils as under natural vegetation? Outlook on Agriculture. 51 (1), pp. 91-104. https://doi.org/10.1177/00307270221082113

Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation

A - Papers appearing in refereed journals
Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers, H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek, L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation. bioRxiv. https://doi.org/10.1101/2022.01.21.477196

A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus, and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests

A - Papers appearing in refereed journals
Bailey, E., Field, L. M., Rawlings, C. J., King, R., Mahareb, F., Hassani-Pak, K., Hughes, D. J., Williamson, M. S., Ganko, E., Buer, B. and Nauen, R. 2022. A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus, and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests. BMC Genomics. 23 (45). https://doi.org/10.1186/s12864-021-08249-y

Long-term evidence for ecological intensification as a pathway to sustainable agriculture

A - Papers appearing in refereed journals
MacLaren, C., Mead, A., Van Balen, D., Claessens, L., Etana, A., De Haan, J., Haagsma, W., Jack, O., Keller, T., Labuschagne, J., Myrbeck, A., Necpalova, M., Nziguheba, G., Six, J., Strauss, J., Swanepoel, P. A., Thierfelder, C., Topp, C., Tshuma, F., Verstegen, H., Walker, R., Watson, C., Wesselink, M. and Storkey, J. 2022. Long-term evidence for ecological intensification as a pathway to sustainable agriculture. Nature Sustainability. https://doi.org/10.1038/s41893-022-00911-x

Can the right composition and diversity of farmed species improve food security among smallholder farmers?

A - Papers appearing in refereed journals
MacLaren, C., Aliyu, K. T., Waswa, W., Storkey, J., Claessens, L., Vanlauwe, B. and Mead, A. 2022. Can the right composition and diversity of farmed species improve food security among smallholder farmers? Frontiers in Sustainable Food Systems. 6, p. 744700. https://doi.org/10.3389/fsufs.2022.744700

In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles

A - Papers appearing in refereed journals
Davey, S. D., Chalmers, I. W., Fernandez-Fuentes, N., Swain, M. T., Smith, D., Abbas Abidi, S. M., Saifullah, M. K., Raman, M., Ravikumar, G., McVeigh, P., Maule, A. G., Brophy, P. M. and Morphew, R. M. 2022. In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles. Molecular Omics. 1. https://doi.org/10.1039/D1MO00254F

Impacts of field margin orientation on populations of soil-dwelling invertebrates in relation to the direction and intensity of field traffic

A - Papers appearing in refereed journals
Carlesso, L., Beadle, A., Cook, S. M., Hartwell, G., Mead, A., Ritz, K., Sparkes, D., Wu, L. and Murray, P. J. 2022. Impacts of field margin orientation on populations of soil-dwelling invertebrates in relation to the direction and intensity of field traffic. Soil Use and Management. 38 (1), pp. 1015-1032. https://doi.org/10.1111/sum.12768

The effect of soil organic matter on long-term availability of phosphorus in soil: evaluation in a biological P mining experiment

A - Papers appearing in refereed journals
Hawkins, J. M. B., Vermeiren, C., Blackwell, M. S. A., Darch, T., Granger, S. J., Dunham, S. J., Hernandez, J. M. B., Smolders, E. and McGrath, S. P. 2022. The effect of soil organic matter on long-term availability of phosphorus in soil: evaluation in a biological P mining experiment. Geoderma. 423, p. 115965. https://doi.org/10.1016/j.geoderma.2022.115965

The legacy effect of synthetic N fertiliser

A - Papers appearing in refereed journals
Vonk, W. J., Hijbeek, R., Glendining, M. J., Powlson, D. S., Bhogal, A., Merbach, I., Silva, J. V., Poffenbarger, H. J., Dhillon, J., Sieling, K. and Ten Berge, H. F. M. 2022. The legacy effect of synthetic N fertiliser. European Journal of Soil Science. 73 (3), p. e13238. https://doi.org/10.1111/ejss.13238

Combining targeted grass traits with red clover improves grassland performance and reduces need for nitrogen fertilisation

A - Papers appearing in refereed journals
Carswell, A. M., Sanchez-Rodriguez, A. F., Saunders, K. S., Le Cocq, K., Shaw, R., Cotton, J., Zhang, Y., Evans, J., Chadwick, D. R., Jones, D. L. and Misselbrook, T. H. 2022. Combining targeted grass traits with red clover improves grassland performance and reduces need for nitrogen fertilisation. European Journal of Agronomy. 133, p. 126433. https://doi.org/10.1016/j.eja.2021.126433

Establishing long-term nitrogen response of global cereals to assess sustainable fertilizer rates

A - Papers appearing in refereed journals
Van Grinsven, H. J. M., Ebanyat, P., Glendining, Margaret, Gu, B., Hijbeek, R., Lam, S. K., Lassaletta, L., Mueller, N. D., Pacheco, F. S., Quemada, M., Bruulsema, T. W., Jacobsen, B. H. and Ten Berge, H. F. M. 2022. Establishing long-term nitrogen response of global cereals to assess sustainable fertilizer rates. Nature Food. 3, pp. 122-132. https://doi.org/10.1038/s43016-021-00447-x

Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies

A - Papers appearing in refereed journals
Schliebs, O., Chan, C-K. K., Bayer, P. E., Petereit, J., Singh, A., Hassani-Pak, K., Batley, J. and Edwards, D. 2021. Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies. Agronomy. 11 (12), p. 2587. https://doi.org/10.3390/agronomy11122587

Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice

A - Papers appearing in refereed journals
Menard, G. N., Sandhu, N., Anderson, D., Catolos, M., Hassall, K. L., Eastmond, P. J., Kumar, A. and Kurup, S. 2021. Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice. Genomics. 113 (6), pp. 4227-4236. https://doi.org/10.1016/j.ygeno.2021.11.006

Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa

A - Papers appearing in refereed journals
Cairns, J. E., Baudron, F., Hassall, K. L., Ndhlela, T., Nyagumbo, I., McGrath, S. P. and Haefele, S. M. 2021. Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa. Outlook on Agriculture. 51 (2), pp. 178-182. https://doi.org/10.1177/00307270211045410

High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding

C1 - Edited contributions to conferences/learned societies
Usai, G., Mascagni, F., Giordani, T., Vangelisti, A., Bosi, E., Zuccolo, A., Ceccarelli, M., King, R., Hassani-Pak, K., Solorzano, L. S., Cavallini, A. and Natali, L. 2021. High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding. International Society of Horticultural Science (ISHS). https://doi.org/10.17660/ActaHortic.2021.1310.4