Intelligent Data Ecosystems
| Title | Intelligent Data Ecosystems |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Baker |
| Executive Assistant | Sally Murdoch |
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(Co)variance structures for linear models in the analysis of plant improvement data
C1 - Edited contributions to conferences/learned societies
Gilmour, A. R., Cullis, B. R., Frensham, A. B. and Thompson, R. 1998. (Co)variance structures for linear models in the analysis of plant improvement data. Payne, R. W. and Green, P. (ed.) Compstat 1998: Proceedings 13th Symposium in Computational Statistics, Bristol, 1998 . Physica-Verlag, Heidelberg. pp. 53-64 https://doi.org/10.1007/978-3-662-01131-7_5
130 years of inorganic nitrogen fertilizer applications to the Broadbalk Wheat Experiment: the effect on soil organic nitrogen.
C1 - Edited contributions to conferences/learned societies
Glendining, M. J. and Powlson, D. S. 1990. 130 years of inorganic nitrogen fertilizer applications to the Broadbalk Wheat Experiment: the effect on soil organic nitrogen. Transactions of the 14th Congress of the International Society of Soil Science , pp IV.9-13. ISSS, Kyoto..
A bioassay for screening materials influencing feeding in the field slug Deroceras reticulatum (Müller) (Mollusca: Pulmonata)
A - Papers appearing in refereed journals
Clark, S. J., Dodds, C. J., Henderson, I. F. and Martin, A. P. 1997. A bioassay for screening materials influencing feeding in the field slug Deroceras reticulatum (Müller) (Mollusca: Pulmonata). Annals of Applied Biology - AAB. 130 (2), pp. 379-385. https://doi.org/10.1111/j.1744-7348.1997.tb06841.x
A bivariate mixed model approach for the analysis of plant survival data
A - Papers appearing in refereed journals
Ganesalingam, A., Smith, A. B., Beeck, C. P., Cowling, W. A., Thompson, R. and Cullis, B. R. 2013. A bivariate mixed model approach for the analysis of plant survival data. Euphytica. 190 (3), pp. 371-383. https://doi.org/10.1007/s10681-012-0791-0
A carbohydrate-binding protein, B-GRANULE CONTENT 1, influences starch granule size distribution in a dose-dependent manner in polyploid wheat
A - Papers appearing in refereed journals
Chia, T., Chirico, M., King, R., Ramirez-Gonzalez, R., Saccomanno, B., Seung, D., Simmonds, J., Trick, M., Uauy, C., Verhoeven, T. and Trafford, K. 2020. A carbohydrate-binding protein, B-GRANULE CONTENT 1, influences starch granule size distribution in a dose-dependent manner in polyploid wheat. Journal of Experimental Botany. 71 (1), pp. 105-115. https://doi.org/10.1093/jxb/erz405
A case study on the effects of data temporal resolution on the simulation of water flux extremes using a process-based model at the grassland field scale
A - Papers appearing in refereed journals
Wu, L., Curceac, S., Atkinson, Peter, Milne, A. E. and Harris, P. 2021. A case study on the effects of data temporal resolution on the simulation of water flux extremes using a process-based model at the grassland field scale. Agricultural Water Management. 255, p. 107049. https://doi.org/10.1016/j.agwat.2021.107049
A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization
A - Papers appearing in refereed journals
Alabdullah AK., Borrill, P., Martin, AC., Ramirez-Gonzalez, RH., Hassani-Pak, K., Uauy, C., Shaw, P. and Moore, G. 2019. A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization. Frontiers in Plant Science. 10 (1325), p. 24pp. https://doi.org/10.3389/fpls.2019.01325
A comparison between water uptake and root length density in winter wheat: effects of root density and rhizosphere properties
A - Papers appearing in refereed journals
Whalley, W. R., Zhang, X., Whalley, P. A., Ashton, R. W., Evans, J., Hawkesford, M. J., Griffiths, G., Huang, Z. D., Zhou, H. and Mooney, S. J. 2020. A comparison between water uptake and root length density in winter wheat: effects of root density and rhizosphere properties . Plant and Soil. 451, pp. 345-356. https://doi.org/10.1007/s11104-020-04530-3
A comparison of algorithms for combination of information in generally balanced designs.
C1 - Edited contributions to conferences/learned societies
Payne, R. W. and Welham, S. J. 1990. A comparison of algorithms for combination of information in generally balanced designs. Compstat 1990.. Springer-Verlag, Heidelberg.. pp. 297-302.
A comparison of analysis methods for late-stage variety evaluation trials
A - Papers appearing in refereed journals
Welham, S. J., Gogel, B. J., Smith, A. B., Thompson, R. and Cullis, B. R. 2010. A comparison of analysis methods for late-stage variety evaluation trials. Australian & New Zealand Journal of Statistics. 52 (2), pp. 125-149. https://doi.org/10.1111/j.1467-842X.2010.00570.x
A comparison of different criteria for selecting binary tests in diagnostic keys
A - Papers appearing in refereed journals
Gower, J. C. and Payne, R. W. 1975. A comparison of different criteria for selecting binary tests in diagnostic keys. Biometrika. 62 (3), pp. 665-672. https://doi.org/10.2307/2335526
A comparison of mixed model splines for curve fitting
A - Papers appearing in refereed journals
Welham, S. J., Cullis, B. R., Kenward, M. G. and Thompson, R. 2007. A comparison of mixed model splines for curve fitting. Australian & New Zealand Journal of Statistics. 49 (1), pp. 1-23. https://doi.org/10.1111/j.1467-842X.2006.00454.x
A comparison of two survival analysis methods with the number of lactations as a discrete time value
C1 - Edited contributions to conferences/learned societies
Yazdi, M. H., Thompson, R., Ducrocq, V. and Visscher, P. 1999. A comparison of two survival analysis methods with the number of lactations as a discrete time value. Proceedings international workshop on EU concerted action Genetic Improvement of Functional Traits in Cattle (GIFT). Interbull.
A comprehensive sugar beet virus yellows model
G - Articles in popular magazines and other technical publications
Bell, J. R. and Mead, A. 2022. A comprehensive sugar beet virus yellows model. British Sugar Beet Review. 90, pp. 12-15.
A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces
A - Papers appearing in refereed journals
King, R., Urban, M., Lauder, R. P., Hawkins, N. J., Evans, M., Plummer, A., Halsey, K., Lovegrove, A., Hammond-Kosack, K. E. and Rudd, J. J. 2017. A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces. PLOS Pathogens. 13 (10), p. e1006672. https://doi.org/10.1371/journal.ppat.1006672
A covariance function for feed intake, live weight and milk yield estimated using a random regression model
A - Papers appearing in refereed journals
Veerkamp, R. F. and Thompson, R. 1999. A covariance function for feed intake, live weight and milk yield estimated using a random regression model. Journal of Dairy Science. 82 (7), pp. 1565-1573. https://doi.org/10.3168/jds.S0022-0302(99)75384-1
A data warehouse for designed experiments
A - Papers appearing in refereed journals
Payne, R. W., Harding, S. A., Dhaliwal,J. A. and Dhaliwal, S. S. 2000. A data warehouse for designed experiments. Computational Statistics. 15, pp. 99-108.
A data warehouse for designed experiments
C2 - Non-edited contributions to conferences
Payne, R. W., Dhaliwal, J. A. and Dhaliwal, S. S. 1998. A data warehouse for designed experiments. Abstracts New Techniques and Technologies for Statistics Conference . pp. 239
A decision support system for nitrogen fertilizer recommendation: what do farmers want?
C2 - Non-edited contributions to conferences
Smith, J. U., Dailey, A. G., Glendining, M. J., Bradbury, N. J., Addiscott, T. M. and Smith, P. 1997. A decision support system for nitrogen fertilizer recommendation: what do farmers want? Proceedings Royal Society of Chemistry Masterclass Conference on Managing the Risks of Nitrates to Humans and the Environment, Colchester, 1-2 September 1997 .
A decision support system for optimising the use of nitrogen in crop rotations
A - Papers appearing in refereed journals
Smith, J. U. and Glendining, M. J. 1996. A decision support system for optimising the use of nitrogen in crop rotations. Aspects of Applied Biology. 47, pp. 103-110.
A detailed curation of the Zymoseptoria tritici IPO323 gene annotation
C2 - Non-edited contributions to conferences
King, R., Rudd, J. J. and Kanyuka, K. 2016. A detailed curation of the Zymoseptoria tritici IPO323 gene annotation. Abstracts 9th International Symposium on Septoria Diseases of Cereals (ISSDC), Paris, France, 7-9 April, 2016. pp. P0927
A European network of long-term sites for studies on soil organic matter
A - Papers appearing in refereed journals
Powlson, D. S., Smith, P., Coleman, K., Smith, J. U., Glendining, M. J., Korschens, M. and Franko, U. 1998. A European network of long-term sites for studies on soil organic matter. Soil & Tillage Research. 47 (3/4), pp. 263-274. https://doi.org/10.1016/S0167-1987(98)00115-9
A European network of long-term sites for studies on soil organic matter
C2 - Non-edited contributions to conferences
Powlson, D. S., Smith, P., Coleman, K., Smith, J. U., Glendining, M. J., Korschens, M. and Franko, U. 1995. A European network of long-term sites for studies on soil organic matter. Abstracts ASA/SSSA Meeting, St Louis, November 1995 .
A framework for mining life sciences data on the semantic web in an interactive, graph-based environment
B - Book chapters etc edited externally
Lysenko, A., Grzebyta, J., Hindle, M. M., Rawlings, C. J. and Splendiani, A. 2014. A framework for mining life sciences data on the semantic web in an interactive, graph-based environment. in: Formenti, E., Wit, E. and Tagliaferri, R. (ed.) Computational intelligence methods for bioinformatics and biostatistics. Lecture Notes in Computer Science, Vol. 8452 Springer, Dordrecht. pp. 225-237
A general algorithm for analysis of variance
A - Papers appearing in refereed journals
Payne, R. W. and Wilkinson, G. N. 1977. A general algorithm for analysis of variance. Journal of the Royal Statistical Society, Series C (Applied Statistics). 26 (3), pp. 251-260. https://doi.org/10.2307/2346965
A genetic analysis of egg quality traits and their maternal influence on offspring-parental regressions of juvenile body weight performance in broiler chickens
A - Papers appearing in refereed journals
Koerhuis, A. N. M., Mckay, J. C., Hill, W. G. and Thompson, R. 1997. A genetic analysis of egg quality traits and their maternal influence on offspring-parental regressions of juvenile body weight performance in broiler chickens. Livestock Production Science. 49 (3), pp. 203-215. https://doi.org/10.1016/S0301-6226(97)00002-X
A guide to procedures in Genstat.
G - Articles in popular magazines and other technical publications
Payne, R. W., Digby, P. G. N. and Arnold, G. M. 1989. A guide to procedures in Genstat. Genstat newsletter. 23, pp. 6-21.
A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades
A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R. H., MacLaren, C., Macdonald, A. J., Semenov, M. A. and Mead, A. 2022. A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Journal of the Royal Society Interface. 19 (193), p. 20220361. https://doi.org/10.1098/rsif.2022.0361
A Holistic Approach to Understanding the Desorption of Phosphorus in Soils
A - Papers appearing in refereed journals
Menezes-Blackburn, D., Zhang, H., Stutter, M., Giles, C. D., Darch, T., George, T. S., Shand, C., Lumsdon, D., Blackwell, M. S. A., Wearing, C., Cooper, P., Wendler, R., Brown, L. and Haygarth, P. M. 2016. A Holistic Approach to Understanding the Desorption of Phosphorus in Soils. Environmental Science & Technology. 50 (7), pp. 3371-3381. https://doi.org/10.1021/acs.est.5b05395
A Lagrangian stochastic model for the dispersion and deposition of Brownian particles in the presence of a temperature gradient
A - Papers appearing in refereed journals
Lo Iacono, G. and Reynolds, A. M. 2005. A Lagrangian stochastic model for the dispersion and deposition of Brownian particles in the presence of a temperature gradient. Journal Of Aerosol Science. 36, pp. 1238-1250.
A landscape-scale study of bumble bee foraging range and constancy, using harmonic radar
A - Papers appearing in refereed journals
Osborne, J. L., Clark, S. J., Morris, R. J., Williams, I. H., Riley, J. R., Smith, A. D., Reynolds, D. R. and Edwards, A. S. 1999. A landscape-scale study of bumble bee foraging range and constancy, using harmonic radar. Journal of Applied Ecology. 36 (4), pp. 519-533. https://doi.org/10.1046/j.1365-2664.1999.00428.x
A link function approach to model heterogeneity of residual variances over time in lactation curve analyses
A - Papers appearing in refereed journals
Jaffrezic, F., White, I. M. S., Thompson, R. and Hill, W. G. 2000. A link function approach to model heterogeneity of residual variances over time in lactation curve analyses. Journal of Dairy Science. 83 (5), pp. 1089-1093. https://doi.org/10.3168/jds.S0022-0302(00)74973-3
A meta-analysis of organic and inorganic phosphorus in organic fertilizers, soils and water: implications for water quality
A - Papers appearing in refereed journals
Darch, T., Blackwell, M. S. A., Hawkins, J. M. B., Haygarth, P. M. and Chadwick, D. R. 2014. A meta-analysis of organic and inorganic phosphorus in organic fertilizers, soils and water: implications for water quality. Critical Reviews in Environmental Science and Technology. 44, pp. 2172-2202. https://doi.org/10.1080/10643389.2013.790752
A Near-Chromosome Level Genome Assembly of the European Hoverfly, Sphaerophoria Rueppellii (Diptera: Syrphidae), and a Comparative Analysis of Insecticide Resistance-Related Gene Families in Hemipteran Crop Pests and Pollinators
A - Papers appearing in refereed journals
Bailey, E., Field, L. M., Rawlings, C. J., King, R., Mohareb, F., Hassani-Pak, K., Hughes, D. J., Williamson, M. S., Ganko, E., Buer, B. and Nauen, R. 2022. A Near-Chromosome Level Genome Assembly of the European Hoverfly, Sphaerophoria Rueppellii (Diptera: Syrphidae), and a Comparative Analysis of Insecticide Resistance-Related Gene Families in Hemipteran Crop Pests and Pollinators. BMC Genomics. 23 (1), p. 198. https://doi.org/10.1186/s12864-022-08436-5
A new approach to the use of meteorological and suction trap data in predicitng aphid problems
C1 - Edited contributions to conferences/learned societies
Harrington, R., Howling, G. G., Bale, J. S. and Clark, S. J. 1991. A new approach to the use of meteorological and suction trap data in predicitng aphid problems.
A new Rothamsted long-term field experiment for the twenty-first century - principles and practice
A - Papers appearing in refereed journals
Li, X., Storkey, J., Mead, A., Shield, I. F., Clark, I. M., Ostler, R., Roberts, B. and Dobermann, A. 2023. A new Rothamsted long-term field experiment for the twenty-first century - principles and practice. Agronomy for Sustainable Development - ASD. 43 (5), p. 60. https://doi.org/10.1007/s13593-023-00914-8
A note on bimodality in the log-likelihood function for penalized spline mixed models
A - Papers appearing in refereed journals
Welham, S. J. and Thompson, R. 2009. A note on bimodality in the log-likelihood function for penalized spline mixed models. Computational Statistics & Data Analysis. 53 (4), pp. 920-931. https://doi.org/10.1016/j.csda.2008.10.031
A novel, integrated approach to assessing social, economic and environmental implications of changing rural land-use: a case study of perennial biomass crops
A - Papers appearing in refereed journals
Haughton, A. J., Bond, A. J., Lovett, A. A., Dockerty, T., Sunnenberg, G., Clark, S. J., Bohan, D. A., Sage, R. B., Mallott, M. D., Mallott, V. E., Cunningham, M. D., Riche, A. B., Shield, I. F., Finch, J. W., Turner, M. M. and Karp, A. 2009. A novel, integrated approach to assessing social, economic and environmental implications of changing rural land-use: a case study of perennial biomass crops. Journal of Applied Ecology. 46 (2), pp. 315-322. https://doi.org/10.1111/j.1365-2664.2009.01623.x
A parsimonious, multiple-regression model of wheat yield response to environment
A - Papers appearing in refereed journals
Landau, S., Mitchell, R. A. C., Barnett, V., Colls, J. J., Craigon, J. and Payne, R. W. 2000. A parsimonious, multiple-regression model of wheat yield response to environment. Agricultural and Forest Meteorology. 101 (2-3), pp. 151-166. https://doi.org/10.1016/S0168-1923(99)00166-5
A population genetics model of marker-assisted selection
A - Papers appearing in refereed journals
Luo, Z. W., Thompson, R. and Woolliams, J. A. 1997. A population genetics model of marker-assisted selection. Genetics. 146 (3), pp. 1173-1183.
People
- Abrare, Sadik
- Al-Manir, Mohammad
- Baker, Chris
- Beard, Nik
- Brandizi, Marco
- Castells, Nathalie
- Clark, Suzanne
- Darch, Tegan
- De-Klerk, Arne
- Doran, Pamela
- Dudley, Ryan
- Durston, Luke
- Edwins, Simon
- Espino, Apple
- Fakeye, Ireoluwa
- Glendining, Margaret
- Hassall, Kirsty
- Hassani-Pak, Keywan
- Havinden, Paul
- Holegar, Sam
- Hughes, David
- Inegbedion, Grace
- Islam, Naheed
- Kendall, Kevin
- Leask, Graham
- Low, Harriet
- Maas, Ellen
- Mead, Andrew
- Minea, Constantin
- Mishra, Harsh
- North, Teri
- Nureldin, Hazem
- Ostler, Richard
- Payne, Roger
- Perryman, Sarah
- Pino-Chandia, Loreto
- Rawlings, Chris
- Reilly, Kirsten
- Reilly, Peter
- Reynolds, Andy
- Ross, Gavin
- Seed-Ahmed, Omer
- Smith, Dan
- Thompson, Robin
- Tooth, Mark
- Torrenti, Felipe
- Varma, Varun
- Velasquez, Melina
- Vijayakumar-Ram, Gokul
- Warr, Alex
- Webb, Philip
- Winfield, Oliver