Intelligent Data Ecosystems
| Title | Intelligent Data Ecosystems |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Baker |
| Executive Assistant | Sally Murdoch |
Outputs
Sort by: Date Title
A priority-based queuing process explanation for scale-free foraging behaviours
A - Papers appearing in refereed journals
Reynolds, A. M., Ropert-Coudert, Y., Kato, A., Chiaradia, A. and Macintosh, A. J. J. 2015. A priority-based queuing process explanation for scale-free foraging behaviours. Animal Behaviour. 108, pp. 67-71. https://doi.org/10.1016/j.anbehav.2015.07.022
A query suggestion workflow for life science IR-systems
A - Papers appearing in refereed journals
Esch, M., Chen, J., Weise, S., Hassani-Pak, K., Scholz, U. and Lange, M. 2014. A query suggestion workflow for life science IR-systems. Journal of Integrative Bioinformatics. 11, p. 237. https://doi.org/10.2390/biecoll-jib-2014-237
A remark on algorithm AS 65: interpreting structure formulae
A - Papers appearing in refereed journals
Payne, R. W. 1990. A remark on algorithm AS 65: interpreting structure formulae. Journal of applied statistics. 39, pp. 167-175.
A remark on algorithm AS 65: interpreting structure formulae.
A - Papers appearing in refereed journals
Payne, R. W. 1990. A remark on algorithm AS 65: interpreting structure formulae. Applied Statistics. 39 (1), pp. 167-175. https://doi.org/10.2307/2347834
A review of genetic parameter estimation
C1 - Edited contributions to conferences/learned societies
Thompson, R. 2002. A review of genetic parameter estimation. Proceedings 7th World Congress on Genetics Applied to Livestock Production, Montpellier, 19-23 August 2002 . pp. 17-01
A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat
A - Papers appearing in refereed journals
Adamski, N. M., Borril, P., Brinton, J., Harrington, S. A., Marchal, C., Bentley, A. R., Bovill, W. D., Cattivelli, L., Cockram, J., Contreras-Moreira, B., Ford, B., Ghosh, S., Harwood, W., Hassani-Pak, K., Hayta, S., Hickey, L. T., Kanyuka, K., King, J., Maccaferri, M., Naamati, G., Pozniak, C. J., Ramirez-Gonzalez, R. H., Sansaloni, C., Trevaskis, B., Wingen, L. U., Wulff, B. B. H. and Uauy, C. 2020. A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. eLife. 9, p. e55646. https://doi.org/10.7554/eLife.55646
A roadmap for gene functional characterisation in wheat
A - Papers appearing in refereed journals
Adamski, N. M., Borril, P., Brinton, J., Harrington, S. A., Marchal, C., Bentley, A. R., Bovill, W. D., Cattivelli, L., Cockram, J., Contreras-Moreira, B., Ford, B., Ghosh, S., Harwood, W., Hassani-Pak, K., Hayta, S., Hickey, L. T., Kanyuka, K., King, J., Maccaferri, M., Naamati, G., Pozniak, C. J., Ramirez-Gonzalez, R. H., Sansaloni, C., Trevaskis, B., Wingen, L. U., Wulff, B. B. H. and Uauy, C. 2019. A roadmap for gene functional characterisation in wheat. PeerJ. 7, p. e26877v2. https://doi.org/10.7287/peerj.preprints.26877v2
A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus, and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests
A - Papers appearing in refereed journals
Bailey, E., Field, L. M., Rawlings, C. J., King, R., Mahareb, F., Hassani-Pak, K., Hughes, D. J., Williamson, M. S., Ganko, E., Buer, B. and Nauen, R. 2022. A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus, and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests. BMC Genomics. 23, p. 45. https://doi.org/10.1186/s12864-021-08249-y
A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements
A - Papers appearing in refereed journals
Reynolds, A. M., Lihoreau, M. and Chittka, L. 2013. A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements. PLOS Computational Biology. 9, p. e1002938 (10pp). https://doi.org/10.1371/journal.pcbi.1002938
A single wind-mediated mechanism explains high-altitude 'non-goal oriented' headings and layering of nocturnally migrating insects
A - Papers appearing in refereed journals
Reynolds, A. M., Reynolds, D. R., Smith, A. D. and Chapman, J. W. 2010. A single wind-mediated mechanism explains high-altitude 'non-goal oriented' headings and layering of nocturnally migrating insects. Proceedings of the Royal Society of London Series B Biological Sciences. 277, pp. 765-772. https://doi.org/10.1098/rspb.2009.1221
A sparse implementation of the average information algorithm for factor analytic and reduced rank variance models
A - Papers appearing in refereed journals
Thompson, R., Cullis, B. R., Smith, A. and Gilmour, A. 2003. A sparse implementation of the average information algorithm for factor analytic and reduced rank variance models. Australian & New Zealand Journal of Statistics. 45 (4), pp. 445-459. https://doi.org/10.1111/1467-842X.00297
A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection
A - Papers appearing in refereed journals
Brown, N. A., Evans, J., Mead, A. and Hammond-Kosack, K. E. 2017. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. Molecular Plant Pathology. 18 (9), pp. 1295-1312. https://doi.org/10.1111/mpp.12564
A strong immune response in young adult honeybees masks their increased susceptibility to infection compared to older bees
A - Papers appearing in refereed journals
Bull, J. C., Ryabov, E. V., Prince, G., Mead, A., Zhang, C., Baxter, L. A., Pell, J. K., Osborne, J. L. and Chandler, D. 2012. A strong immune response in young adult honeybees masks their increased susceptibility to infection compared to older bees. PLOS Pathogens. 8, p. e1003083. https://doi.org/10.1371/journal.ppat.1003083
A study of criteria for constructing identification keys containing tests with unequal costs.
A - Papers appearing in refereed journals
Payne, R. W. and Thompson, C. J. 1989. A study of criteria for constructing identification keys containing tests with unequal costs. Computational Statistics Quarterly. 1, pp. 43-52.
A study of selection criteria for constructing identification keys
A - Papers appearing in refereed journals
Payne, R. W. and Dixon, T. J. 1984. A study of selection criteria for constructing identification keys. COMPSTAT 1984. pp. 148-153. https://doi.org/10.1007/978-3-642-51883-6_20
A sublethal concentration of Sulfoxaflor has minimal impact on buff-tailed bumblebee (Bombus terrestris) locomotor behaviour under aversive conditioning
A - Papers appearing in refereed journals
James, L., Reynolds, A. M., Mellor, I. R. and Davies, T. G. E. 2023. A sublethal concentration of Sulfoxaflor has minimal impact on buff-tailed bumblebee (Bombus terrestris) locomotor behaviour under aversive conditioning. Toxics. 11 (3), p. 279. https://doi.org/10.3390/toxics11030279
A summary of new facilities in Genstat 5 Release 3
G - Articles in popular magazines and other technical publications
Payne, R. W. 1994. A summary of new facilities in Genstat 5 Release 3. Genstat newsletter. 30, pp. 7-12.
A system for improved fertilizer recommendations for arable and horticultural crops
C2 - Non-edited contributions to conferences
Smith, J. U., Dailey, A. G., Glendining, M. J., Bradbury, N. J., Addiscott, T. M., Smith, P. and Taylor, P. 1996. A system for improved fertilizer recommendations for arable and horticultural crops. Abstracts British Society of Soil Science Meeting, Dundee, 23-25 September 1996 .
A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences
C2 - Non-edited contributions to conferences
Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069
A tiered approach for evaluating Erynia neoaphidis isolates against seven aphid species
C2 - Non-edited contributions to conferences
Shah, P. A., Clark, S. J. and Pell, J. K. 2002. A tiered approach for evaluating Erynia neoaphidis isolates against seven aphid species. Abstracts 35th Annual Meeting of the Society for Invertebrate Pathology, Foz do Iguassu, Brazil, 18-23 August 2002 . pp. 104
A variance shift model for detection of outliers in the linear mixed model
A - Papers appearing in refereed journals
Gumedze, F. N., Welham, S. J., Gogel, B. J. and Thompson, R. 2010. A variance shift model for detection of outliers in the linear mixed model. Computational Statistics & Data Analysis. 54 (9), pp. 2128-2144. https://doi.org/10.1016/j.csda.2010.03.019
Aberdeen Angus national sire and dam summary
D1 - Technical reports: non-confidential
Bridge, P., Brown, C. M., Guy, D. R., Weigleb, B., Crump, R. E., Simm, G., Findlay, R. M., Nicholson, P. and Thompson, R. 1996. Aberdeen Angus national sire and dam summary. Signet, Milton Keynes.
Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome
C1 - Edited contributions to conferences/learned societies
Machado, A., King, R., Urban, M., Del Ponte, E. M., Tessmann, D. J., Kanyuka, K. and Hammond-Kosack, K. E. 2018. Abstracts of Presentations at ICPP2018: Analysis of Fusarium graminearum pangenome. International Congress of Plant Pathology (ICPP) 2018. Boston, USA 29 Jul 2018 American Phytopathological Society (APS). https://doi.org/10.1094/PHYTO-108-10-S1.1
Accounting for data sparsity when forming spatially coherent zones
A - Papers appearing in refereed journals
Hassall, K. L., Whitmore, A. P. and Milne, A. E. 2019. Accounting for data sparsity when forming spatially coherent zones. Applied Mathematical Modelling. 72 (August), pp. 537-552. https://doi.org/10.1016/j.apm.2019.03.030
ACE: Application for Conditional probability Elicitation
J - Computer programs
Hassall, K. L. 2019. ACE: Application for Conditional probability Elicitation. GitHub Rothamsted Research. https://doi.org/10.5281/zenodo.2563239
Across-flock evaluation and optimisation of pedigree recording for merino sheep
C1 - Edited contributions to conferences/learned societies
Atkins, K. D., Gilmour, A. R., Thompson, R. and Coelli, K. A. 1998. Across-flock evaluation and optimisation of pedigree recording for merino sheep. Proceedings 6th World Congress on Genetics Applied to Livestock Production, Armidale, Australia, 11-16 January 1998 .
Adaptive Levy walks can outperform composite Brownian walks in non-destructive random searching scenarios
A - Papers appearing in refereed journals
Reynolds, A. M. 2009. Adaptive Levy walks can outperform composite Brownian walks in non-destructive random searching scenarios. Physica A: Statistical Mechanics and its Applications. 388, pp. 561-564. https://doi.org/10.1016/j.physa.2008.11.007
Adjusting for conditional bias in process model simulations of hydrological extremes: an experiment using the North Wyke Farm Platform
A - Papers appearing in refereed journals
Curceac, S., Atkinson, P. M., Milne, A. E., Wu, L. and Harris, P. 2020. Adjusting for conditional bias in process model simulations of hydrological extremes: an experiment using the North Wyke Farm Platform. Frontiers in Artificial Intelligence. 3 (82). https://doi.org/10.3389/frai.2020.565859
Age-related increase in levels of insecticidal protein in the progenies of transgenic oilseed rape and its efficacy against a susceptible strain of diamondback moth
A - Papers appearing in refereed journals
Wei, W., Schuler, T. H., Clark, S. J., Stewart, C. N. and Poppy, G. M. 2005. Age-related increase in levels of insecticidal protein in the progenies of transgenic oilseed rape and its efficacy against a susceptible strain of diamondback moth. Annals of Applied Biology - AAB. 147 (3), pp. 227-234. https://doi.org/10.1111/j.1744-7348.2005.00024.x
Agricultural experiments
B - Book chapters etc edited externally
Payne, R. W. 2002. Agricultural experiments. in: Greenfield, T. (ed.) Research methods for postgraduates, 2nd ed Arnold, London. pp. 163-171
Agricultural experiments
B - Book chapters etc edited externally
Payne, R. W. 1996. Agricultural experiments. in: Greenfield, T. (ed.) Research methods: guidance for postgraduates Arnold, London. pp. 107-114
Agricultural intensification and climate change have increased the threat from weeds
A - Papers appearing in refereed journals
Storkey, J., Mead, A., Addy, J. and Macdonald, A. J. 2021. Agricultural intensification and climate change have increased the threat from weeds. Global Change Biology. 118 (2), p. e2002548117. https://doi.org/10.1111/gcb.15585
Agricultural sustainabilty: economic, environmental and statistical considerations
E - Books edited/written by staff member, alone/with others
Barnett, V. and Payne, R. W. Steiner, R. (ed.) 1995. Agricultural sustainabilty: economic, environmental and statistical considerations. John Wiley & Sons Chichester, West Sussex.
Agrochemicals interact - synergistically to increase bee mortality - addendum
A - Papers appearing in refereed journals
Siviter, H., Bailes, E. J., Martin, C. D., Oliver, T. R., Koricheva, J., Leadbeater, E. and Brown, M. J. F. 2023. Agrochemicals interact - synergistically to increase bee mortality - addendum. Nature. 617, pp. E7-E9. https://doi.org/10.1038/s41586-023-05997-7
Agrochemicals interact synergistically to increase bee mortality
A - Papers appearing in refereed journals
Siviter, H., Bailes, E. J., Martin, C. D., Oliver, T., Koricheva, J., Leadbeater, E. and Brown, M. J. F. 2021. Agrochemicals interact synergistically to increase bee mortality. Nature. 596, pp. 389-392. https://doi.org/10.1038/s41586-021-03787-7
AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture
A - Papers appearing in refereed journals
Daykin, G. M., Aizen, M. A., Barrett, L. G., Bartlett, L. J., Batary, P., Garibaldi, L. A., Guncan, A., Gutam, S., Maas, B., Mitnala, J., Montano-Centellas, F., Muoni, T., Ockinger, E., Okechalu, O., Ostler, R., Potts, S. G., Rose, D. C., Topp, C. F. E., Usieta, H. O., Utoblo, O. G., Watson, C., Zou, Y., Sutherland, W. J. and Hood, A. S. C. 2023. AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture. PLOS ONE. 18 (6), p. e0285478. https://doi.org/10.1371/journal.pone.0285478
AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations
A - Papers appearing in refereed journals
Defoin-Platel, M., Hindle, M. M., Lysenko, A., Powers, S. J., Habash, D. Z., Rawlings, C. J. and Saqi, M. 2011. AIGO: towards a unified framework for the analysis and the inter-comparison of GO functional annotations. BMC Bioinformatics. 12, p. 431 (13pp). https://doi.org/10.1186/1471-2105-12-431
Airborne Quercus pollen in SW Spain: Identifying favourable conditions for atmospheric transport and potential source areas
A - Papers appearing in refereed journals
Maya-Manzanoa, J. M., Fernandez-Rodriguez, S., Smith, M., Tormo-Molina, R., Reynolds, A. M., Silva-Palacios, I., Gonzalo-Garijo, A. and Sadys, M. 2016. Airborne Quercus pollen in SW Spain: Identifying favourable conditions for atmospheric transport and potential source areas. Science of the Total Environment. 571, pp. 1037-1047. https://doi.org/10.1016/j.scitotenv.2016.07.094
Algorithms, data structures and languages: the computational ingredients for innovative analysis
B - Book chapters etc edited externally
Payne, R. W. 2004. Algorithms, data structures and languages: the computational ingredients for innovative analysis. in: Adams, N., Stephens, D., Hand, D. J. and Crowder, M. (ed.) Methods and models in statistics: in honour of Professor John Nelder FRS Imperial College Press, London. pp. 95-118
Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials
N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xx
People
- Abrare, Sadik
- Al-Manir, Mohammad
- Baker, Chris
- Beard, Nik
- Brandizi, Marco
- Castells, Nathalie
- Clark, Suzanne
- Darch, Tegan
- De-Klerk, Arne
- Doran, Pamela
- Dudley, Ryan
- Durston, Luke
- Edwins, Simon
- Espino, Apple
- Fakeye, Ireoluwa
- Glendining, Margaret
- Hassall, Kirsty
- Hassani-Pak, Keywan
- Havinden, Paul
- Holegar, Sam
- Hughes, David
- Inegbedion, Grace
- Islam, Naheed
- Kendall, Kevin
- Leask, Graham
- Low, Harriet
- Maas, Ellen
- Mead, Andrew
- Minea, Constantin
- Mishra, Harsh
- North, Teri
- Nureldin, Hazem
- Ostler, Richard
- Payne, Roger
- Perryman, Sarah
- Pino-Chandia, Loreto
- Rawlings, Chris
- Reilly, Kirsten
- Reilly, Peter
- Reynolds, Andy
- Ross, Gavin
- Seed-Ahmed, Omer
- Smith, Dan
- Thompson, Robin
- Tooth, Mark
- Torrenti, Felipe
- Varma, Varun
- Velasquez, Melina
- Vijayakumar-Ram, Gokul
- Warr, Alex
- Webb, Philip
- Winfield, Oliver