PLOS ONE

Journal

TitlePLOS ONE
ISSN1932-6203
PublisherPublic Library of Science (PLOS)
Notes

No embargo on manuscript

Web address (URL)http://journals.plos.org/plosone/s/journal-information

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A Brassica exon array for whole-transcript gene expression profiling

A - Papers appearing in refereed journals
Love, C. G., Graham, N. S., O Lochlainn, S., Bowen, H. C., May, S. T., White, P. J., Broadley, M. R., Hammond, J. P. and King, G. J. 2010. A Brassica exon array for whole-transcript gene expression profiling. PLOS ONE. 5, p. e12812 (9pp). https://doi.org/10.1371/journal.pone.0012812

A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions

A - Papers appearing in refereed journals
Calderwood, A., Siles-Suarez, L., Eastmond, P. J., Kurup, S. and Morris, R. 2023. A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions. PLOS ONE. 18 (9), p. 0290429. https://doi.org/10.1371/journal.pone.0290429

A diagnostic real-time PCR assay for the rapid identification of the tomato-potato psyllid, Bactericera cockerelli (Šulc, 1909) and development of a psyllid barcoding database

A - Papers appearing in refereed journals
Sumner-Kalkun, J. C., Sjolund, M. J., Arnsdorf, Y. M., Carnegie, M., Highet, F., Ouvrard, D., Greenslade, A. F. C., Bell, J. R., Sigvald, R. and Kenyon, D. M. 2020. A diagnostic real-time PCR assay for the rapid identification of the tomato-potato psyllid, Bactericera cockerelli (Šulc, 1909) and development of a psyllid barcoding database. PLOS ONE. 15 (3), p. e0230741. https://doi.org/10.1371/journal.pone.0230741

A process-based approach to predicting the effect of climate change on the distribution of an invasive allergenic plant in Europe

A - Papers appearing in refereed journals
Storkey, J., Stratonovitch, P., Chapman, D. S., Vidotto, F. and Semenov, M. A. 2014. A process-based approach to predicting the effect of climate change on the distribution of an invasive allergenic plant in Europe. PLOS ONE. 9, p. e88156. https://doi.org/10.1371/journal.pone.0088156

Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense

A - Papers appearing in refereed journals
Vidotti, M. S., Lyra, D. H., Morosini, J. S., Granato, I. S. C., Quecine, M. C., Azevedo, J. L. and Fritsche-Neto, R. 2019. Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense . PLOS ONE. 14 (9), p. e0222788. https://doi.org/10.1371/journal.pone.0222788

Aedes aegypti mosquitoes exhibit decreased repellency by DEET following previous exposure

A - Papers appearing in refereed journals
Stanczyk, N. M., Brookfield, J. F. Y., Field, L. M. and Logan, J. G. 2013. Aedes aegypti mosquitoes exhibit decreased repellency by DEET following previous exposure. PLOS ONE. 8, p. e54438. https://doi.org/10.1371/journal.pone.0054438

Agricultural Management and Climatic Change Are the Major Drivers of Biodiversity Change in the UK

A - Papers appearing in refereed journals
Burns, F., Eaton, M. A., Barlow, K. E., Beckmann, B. C., Brereton, T., Brooks, D. R., Brown, P. M. J., Al Fulaij, N., Gent, T., Henderson, I., Noble, D. G., Parsons, M., Powney, G. D., Roy, H. E., Stroh, P., Walker, K., Wilkinson, J. W., Wotton, S. R. and Gregory, R. D. 2016. Agricultural Management and Climatic Change Are the Major Drivers of Biodiversity Change in the UK. PLOS ONE. 11 (3). https://doi.org/10.1371/journal.pone.0151595

AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture

A - Papers appearing in refereed journals
Daykin, G. M., Aizen, M. A., Barrett, L. G., Bartlett, L. J., Batary, P., Garibaldi, L. A., Guncan, A., Gutam, S., Maas, B., Mitnala, J., Montano-Centellas, F., Muoni, T., Ockinger, E., Okechalu, O., Ostler, R., Potts, S. G., Rose, D. C., Topp, C. F. E., Usieta, H. O., Utoblo, O. G., Watson, C., Zou, Y., Sutherland, W. J. and Hood, A. S. C. 2023. AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture. PLOS ONE. 18 (6), p. e0285478. https://doi.org/10.1371/journal.pone.0285478

An amino acid substitution (L925V) associated with resistance to pyrethroids in Varroa destructor

A - Papers appearing in refereed journals
Gonzalez-Cabrera, J., Davies, T. G. E., Field, L. M., Kennedy, P. J. and Williamson, M. S. 2013. An amino acid substitution (L925V) associated with resistance to pyrethroids in Varroa destructor. PLOS ONE. 8, p. e82941. https://doi.org/10.1371/journal.pone.0082941

An Indirect Defence Trait Mediated through Egg-Induced Maize Volatiles from Neighbouring Plants

A - Papers appearing in refereed journals
Mutyambai, D. M., Bruce, T. J. A., Van Den Berg, J., Midega, C. A. O., Pickett, J. A. and Khan, Z. R. 2016. An Indirect Defence Trait Mediated through Egg-Induced Maize Volatiles from Neighbouring Plants. PLOS ONE. 11 (7). https://doi.org/10.1371/journal.pone.0158744

An individual-based model of the evolution of pesticide resistance in heterogeneous environments: control of Meligethes aeneus population in oilseed rape crops

A - Papers appearing in refereed journals
Stratonovitch, P., Elias, J., Denholm, I., Slater, R. and Semenov, M. A. 2014. An individual-based model of the evolution of pesticide resistance in heterogeneous environments: control of Meligethes aeneus population in oilseed rape crops. PLOS ONE. 9, p. e115631. https://doi.org/10.1371/journal.pone.0115631

An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea

A - Papers appearing in refereed journals
Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry

A - Papers appearing in refereed journals
Betancor, M. B., Li, K., Sprague, M., Bardal, T., Sayanova, O. V., Usher, S., Han, L., Måsøval, K., Torrissen, O., Napier, J. A., Tocher, D. R. and Olsen, R. E. 2017. An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry. PLOS ONE. 12 (4), p. e0175415. https://doi.org/10.1371/journal.pone.0175415

Arthropod pest control for UK oilseed rape – comparing insecticide efficacies, side effects and alternatives

A - Papers appearing in refereed journals
Zhang, Han, Breeze, T., Bailey, A., Garthwaite, D., Harrington, R. and Potts, S. G. 2017. Arthropod pest control for UK oilseed rape – comparing insecticide efficacies, side effects and alternatives. PLOS ONE. 12 (1), p. e0169475. https://doi.org/10.1371/journal.pone.0169475

Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants

A - Papers appearing in refereed journals
Huang, Y-J., Qi, A., King, G. J. and Fitt, B. D. L. 2014. Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants. PLOS ONE. 9, p. e84924. https://doi.org/10.1371/journal.pone.0084924

Automated discovery of food webs from ecological data using logic-based machine learning

A - Papers appearing in refereed journals
Bohan, D. A., Caron-Lormier, G., Muggleton, S., Raybould, A. and Tamaddoni-Nezhad, A. 2011. Automated discovery of food webs from ecological data using logic-based machine learning. PLOS ONE. 6, p. e29028 (9pp). https://doi.org/10.1371/journal.pone.0029028

Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2

A - Papers appearing in refereed journals
Andresen, L. C., Dungait, J. A. J., Bol, R., Selsted, M. B., Ambus, P. and Michelsen, A. 2014. Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2. PLOS ONE. 9, p. e85070. https://doi.org/10.1371/journal.pone.0085070

Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere

A - Papers appearing in refereed journals
Neal, A. L., Ahmad, S., Gordon-Weeks, R. and Ton, J. 2012. Benzoxazinoids in root exudates of maize attract Pseudomonas putida to the rhizosphere. PLOS ONE. 7, p. e35498 (10pp). https://doi.org/10.1371/journal.pone.0035498

Can the soil seed bank of Rumex obtusifolius in productive grasslands be explained by management and soil properties?

A - Papers appearing in refereed journals
Suter, M., Klotzli, J., Beaumont, D. A., Kolmanic, A., Leskovsek, R., Schaffner, U., Storkey, J. and Luscher, A. 2023. Can the soil seed bank of Rumex obtusifolius in productive grasslands be explained by management and soil properties? PLOS ONE. 18 (6), p. e0286760. https://doi.org/10.1371/journal.pone.0286760

Carbon sequestration by fruit trees - Chinese apple orchards as an example

A - Papers appearing in refereed journals
Wu, T., Wang, Y., Yu, C., Chiarawipa, R., Zhang, X., Han, Z. and Wu, L. 2012. Carbon sequestration by fruit trees - Chinese apple orchards as an example. PLOS ONE. 7, p. e38883. https://doi.org/10.1371/journal.pone.0038883

Catalog of microRNA seed polymorphisms in vertebrates

A - Papers appearing in refereed journals
Zorc, M., Skok, D. J., Godnic, I., Calin, G. A., Horvat, S., Jiang, Z., Dovc, P. and Kunej, T. 2012. Catalog of microRNA seed polymorphisms in vertebrates. PLOS ONE. 7, p. e30737. https://doi.org/10.1371/journal.pone.0030737

Cereal Aphid Colony Turnover and Persistence in Winter Wheat

A - Papers appearing in refereed journals
Winder, L., Alexander, C. J., Woolley, C., Perry, J. N. and Holland, J. M. 2014. Cereal Aphid Colony Turnover and Persistence in Winter Wheat. PLOS ONE. 9 (9). https://doi.org/10.1371/journal.pone.0106822

Characteristics and drivers of high-altitude ladybird flight: insights from vertical-looking entomological radar

A - Papers appearing in refereed journals
Jeffries, D. L., Chapman, J. W., Roy, H. E., Humphries, S., Harrington, R., Brown, P. M. J. and Lawson Handley, L-J. 2013. Characteristics and drivers of high-altitude ladybird flight: insights from vertical-looking entomological radar. PLOS ONE. 8, p. e82278. https://doi.org/10.1371/journal.pone.0082278

Characterization of cereal β-glucan extracts from oat and barley and quantification of proteinaceous matter

A - Papers appearing in refereed journals
Zielke, C., Kosik, O., Ainalem, M. L., Lovegrove, A., Stradner, A. and Nilsson, L. 2017. Characterization of cereal β-glucan extracts from oat and barley and quantification of proteinaceous matter. PLOS ONE. 12 (2), p. e0172034. https://doi.org/10.1371/journal.pone.0172034

Chilean public attitudes towards beef production systems

A - Papers appearing in refereed journals
De la Fuente, V. M., Enriquez, D., Teixeira, D. L., Larrain, R. and Hotzel, M. J. 2023. Chilean public attitudes towards beef production systems. PLOS ONE. 18 (4), p. e0284080. https://doi.org/10.1371/journal.pone.0284080

Climate change affects winter chill for temperate fruit and nut trees

A - Papers appearing in refereed journals
Luedeling, E., Girvetz, E. H., Semenov, M. A. and Brown, P. H. 2011. Climate change affects winter chill for temperate fruit and nut trees. PLOS ONE. 6, p. e20155 (13pp). https://doi.org/10.1371/journal.pone.0020155

Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning

A - Papers appearing in refereed journals
Towett, E. K., Drake, L. B., Acquah, G., Haefele, S. M., McGrath, S. P. and Shepherd, K. D. 2020. Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning. PLOS ONE. 15 (12), p. e0242821. https://doi.org/10.1371/journal.pone.0242821

Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola

A - Papers appearing in refereed journals
Do Amaral, A. M., Antoniw, J. F., Rudd, J. J. and Hammond-Kosack, K. E. 2012. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola. PLOS ONE. 7, p. e49904 (19 pp). https://doi.org/10.1371/journal.pone.0049904

Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance

A - Papers appearing in refereed journals
Cao, X., Luo, Y., Zhou, Y., Fan, J., Xu, X., West, J. S., Duan, X. and Cheng, D. 2015. Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance. PLOS ONE. 10, p. e0121462. https://doi.org/10.1371/journal.pone.0121462

Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals
Chen, L., Huang, L., Min, D., Phillips, A. L., Wang, S., Madgwick, P. J., Parry, M. A. J. and Hu, Y-G. 2012. Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.). PLOS ONE. 7, p. e41570 (11pp). https://doi.org/10.1371/journal.pone.0041570

Differential expression patterns in chemosensory and non-chemosensory tissues of putative chemosensory genes identified by transcriptome analysis of insect pest the purple stem borer Sesamia inferens (Walker)

A - Papers appearing in refereed journals
Zhang, Y-N., Jin, J-Y., Jin, R., Xia, Y-H., Zhou, J-J., Deng, J-Y. and Dong, S-L. 2013. Differential expression patterns in chemosensory and non-chemosensory tissues of putative chemosensory genes identified by transcriptome analysis of insect pest the purple stem borer Sesamia inferens (Walker). PLOS ONE. 8, p. e69715. https://doi.org/10.1371/journal.pone.0069715

Discovering study-specific gene regulatory networks

A - Papers appearing in refereed journals
Bo, V., Curtis, T., Lysenko, A., Saqi, M., Swift, S. and Tucker, A. 2014. Discovering study-specific gene regulatory networks. PLOS ONE. 9, p. e106524. https://doi.org/10.1371/journal.pone.0106524

Distribution and frequency of kdr mutations within Anopheles gambiae s.l. populations and first report of the Ace.1 G119S mutation in Anopheles arabiensis from Burkina Faso (West Africa)

A - Papers appearing in refereed journals
Dabire, R. K., Namountougou, M., Diabate, A., Soma, D. D., Bado, J., Toe, H. K., Bass, C. and Combary, P. 2014. Distribution and frequency of kdr mutations within Anopheles gambiae s.l. populations and first report of the Ace.1 G119S mutation in Anopheles arabiensis from Burkina Faso (West Africa). PLOS ONE. 9, p. e101484. https://doi.org/10.1371/journal.pone.0101484

Do bumblebees have signatures? Demonstrating the existence of a speed-curvature power law in Bombus terrestris locomotion patterns.

A - Papers appearing in refereed journals
James, L., Davies, T. G. E., Lim, K. S. and Reynolds, A. M. 2020. Do bumblebees have signatures? Demonstrating the existence of a speed-curvature power law in Bombus terrestris locomotion patterns. PLOS ONE. 15 (1), p. e0226393. https://doi.org/10.1371/journal.pone.0226393

Drought and root herbivory interact to alter the response of above-ground parasitoids to aphid infested plants and associated plant volatile signals

A - Papers appearing in refereed journals
Tariq, M., Wright, D. J., Bruce, T. J. A. and Staley, J. T. 2013. Drought and root herbivory interact to alter the response of above-ground parasitoids to aphid infested plants and associated plant volatile signals. PLOS ONE. 8, p. e69013. https://doi.org/10.1371/journal.pone.0069013

Drought stress affects the protein and dietary fiber content of wholemeal wheat flour in wheat/Aegilops addition lines

A - Papers appearing in refereed journals
Rakszegi, M., Darkó, E., Lovegrove, A., Molnár, M., Lang, L., Bedő, Z, Molnár-Láng, M. and Shewry, P. R. 2019. Drought stress affects the protein and dietary fiber content of wholemeal wheat flour in wheat/Aegilops addition lines. PLOS ONE. 14 (2), p. e0211892. https://doi.org/10.1371/journal.pone.0211892

Dual Fatty Acid Elongase Complex Interactions in Arabidopsis

A - Papers appearing in refereed journals
Morineau, C., Gissot, L., Bellec, Y., Hematy, K., Tellier, F., Renne, C., Haslam, R. P., Beaudoin, F., Napier, J. A. and Faure, J. D. 2016. Dual Fatty Acid Elongase Complex Interactions in Arabidopsis. PLOS ONE. 11 (9), p. 20. https://doi.org/10.1371/journal.pone.0160631

Effect of breadmaking process on In vitro gut microbiota parameters in irritable bowel syndrome

A - Papers appearing in refereed journals
Costabile, A., Santarelli, S., Claus, S. P., Sanderson, J., Hudspith, B. N., Brostoff, J., Ward, J. L., Lovegrove, A., Shewry, P. R., Jones, H. E., Whitley, A. M. and Gibson, G. R. 2014. Effect of breadmaking process on In vitro gut microbiota parameters in irritable bowel syndrome. PLOS ONE. 9, p. e111225. https://doi.org/10.1371/journal.pone.0111225

Effects of manipulated above- and belowground organic input on soil respiration in a Chinese pine plantation

A - Papers appearing in refereed journals
Fan, J., Wang, J., Zhao, B., Wu, L., Zhang, C., Zhao, X. and Gadow, K. V. 2015. Effects of manipulated above- and belowground organic input on soil respiration in a Chinese pine plantation. PLOS ONE. 10, p. e126337. https://doi.org/10.1371/journal.pone.0126337

Employing a Monte Carlo algorithm in Newton-type methods for restricted maximum likelihood estimation of genetic parameters

A - Papers appearing in refereed journals
Matilainen, K., Mantysaari, E. A., Lidauer, M. H., Stranden, I. and Thompson, R. 2013. Employing a Monte Carlo algorithm in Newton-type methods for restricted maximum likelihood estimation of genetic parameters. PLOS ONE. 8 (12), p. e80821. https://doi.org/10.1371/journal.pone.0080821