BCP: Wheat Pathogenomics
| Title | BCP: Wheat Pathogenomics |
|---|---|
| Type | Research cluster |
Outputs
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The 26th Fungal Genetics Conference, Asilomar, USA, 15th-20th March 2011
G - Articles in popular magazines and other technical publications
Gurr, S. J., Dyer, P. S., Brown, N. A., Urban, M. and Tauati, S. 2012. The 26th Fungal Genetics Conference, Asilomar, USA, 15th-20th March 2011. BSPP News. 67, pp. 20-25.
The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum
A - Papers appearing in refereed journals
Merhej, J., Urban, M., Dufresne, M., Hammond-Kosack, K. E., Richard-Forget, F. and Barreau, C. 2012. The velvet gene, FgVe1, affects fungal development and positively regulates trichothecene biosynthesis and pathogenicity in Fusarium graminearum. Molecular Plant Pathology. 13 (4), pp. 363-374. https://doi.org/10.1111/j.1364-3703.2011.00755.x
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis
A - Papers appearing in refereed journals
Brown, N. A., Antoniw, J. F. and Hammond-Kosack, K. E. 2012. The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PLOS ONE. 7, p. e33731 (14pp). https://doi.org/10.1371/journal.pone.0033731
Confidential report to Syngenta, January 2012
D1 - Technical reports: non-confidential
Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2012. Confidential report to Syngenta, January 2012.
The induction of mycotoxins by trichothecene producing Fusarium species
B - Book chapters etc edited externally
Lowe, R., Jubault, M., Canning, G., Urban, M. and Hammond-Kosack, K. E. 2012. The induction of mycotoxins by trichothecene producing Fusarium species. in: Thomma, B. P. H. J. and Bolton, M. D. (ed.) Plant fungal pathogens: methods and protocols (Methods in Molecular Biology, Vol 835) Springer, Berlin. pp. 439-455
Virus-induced gene silencing system for functional genomics studies in wheat and related cereals
C2 - Non-edited contributions to conferences
Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2011. Virus-induced gene silencing system for functional genomics studies in wheat and related cereals. Abstracts UK Monogram Network Workshop, Sutton Bonington, 11-13 April 2011 . pp. 14
WGIN Stakeholder's Newsletter [November 2011]
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2011. WGIN Stakeholder's Newsletter [November 2011]. WGIN Stakeholders' Newsletter. November.
Reducing take-all inoculum build-up during a first wheat crop
C2 - Non-edited contributions to conferences
Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. 2011. Reducing take-all inoculum build-up during a first wheat crop. APS-IPPC Joint Meeting, Tampa, Florida, USA, 30 July -3 August 2011. American Phytopathological Society (APS).
OmniMapFree a unified tool to visualise and explore sequenced genomes
A - Papers appearing in refereed journals
Antoniw, J. F., Beacham, A. M., Baldwin, T. K., Urban, M., Rudd, J. J. and Hammond-Kosack, K. E. 2011. OmniMapFree a unified tool to visualise and explore sequenced genomes. BMC Bioinformatics. 12, p. 447 (14pp). https://doi.org/10.1186/1471-2105-12-447
Characterisation of the Fusarium graminearum-wheat floral interaction
A - Papers appearing in refereed journals
Brown, N. A., Bass, C. G., Baldwin, T. K., Chen, Huaigu, Massot, F., Carion, P. W. C., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2011. Characterisation of the Fusarium graminearum-wheat floral interaction. Journal of Pathogens. 2011, p. 626345. https://doi.org/10.4061/2011/626345
Minimum information about a bioactive entity (MIABE)
A - Papers appearing in refereed journals
Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., Forster, M., Gaulton, A., Gilson, M., Glen, R., Grigorov, M., Hammond-Kosack, K. E., Harland, L., Hopkins, A., Larminie, C., Lynch, N., Mann, R. K., Murray-Rust, P., Lo Piparo, E., Southan, C., Steinbeck, C., Wishart, D., Hermjakob, H., Overington, J. and Thornton, J. 2011. Minimum information about a bioactive entity (MIABE). Nature Reviews Drug Discovery. 10, pp. 661-669. https://doi.org/10.1038/nrd3503
An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations
A - Papers appearing in refereed journals
Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x
Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola
A - Papers appearing in refereed journals
Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x
Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis
A - Papers appearing in refereed journals
Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070
Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat
A - Papers appearing in refereed journals
Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347
Infection of the wheat ear by the fungus Fusarium culmorum
C2 - Non-edited contributions to conferences
Van De Meene, A., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2011. Infection of the wheat ear by the fungus Fusarium culmorum. Abstracts Botanical Microscopy Conference, Wageningen, 16-21 April 2011 .
A new approach to reduce the risk of Take-all disease
G - Articles in popular magazines and other technical publications
Mcmillan, V. E., Hammond-Kosack, K. E., Kanyuka, K. and Gutteridge, R. J. 2011. A new approach to reduce the risk of Take-all disease. RRA Newsletter. April, pp. 1-2.
Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey
A - Papers appearing in refereed journals
Yilmaz, N. D. K., Lyons, R. L., Smith, M. J. and Kanyuka, K. 2011. Investigation of soilborne mosaic virus diseases transmitted by Polymyxa graminis in cereal production areas of the Anatolian part of Turkey. European Journal of Plant Pathology. 130, pp. 59-72. https://doi.org/10.1007/s10658-010-9731-9
Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop
A - Papers appearing in refereed journals
Mcmillan, V. E., Hammond-Kosack, K. E. and Gutteridge, R. J. 2011. Evidence that wheat cultivars differ in their ability to build up inoculum of the take-all fungus, Gaeumannomyces graminis var. tritici, under a first wheat crop. Plant Pathology. 60 (2), pp. 200-206. https://doi.org/10.1111/j.1365-3059.2010.02375.x
The unseen threat of symptomless Fusarium wheat ear infection
C1 - Edited contributions to conferences/learned societies
Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2011. The unseen threat of symptomless Fusarium wheat ear infection. Crop protection in Southern Britain. Aspects of Applied Biology 106 . pp. 143-149
Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment
A - Papers appearing in refereed journals
Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x
The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves
A - Papers appearing in refereed journals
Deller, S., Hammond-Kosack, K. E. and Rudd, J. J. 2011. The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves. Journal of Plant Physiology. 168, pp. 63-71. https://doi.org/10.1016/j.jplph.2010.05.024
Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71
The unseen threat to UK wheat production from Fusarium ear blight
C2 - Non-edited contributions to conferences
Brown, N. A., Bass, C. G., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. The unseen threat to UK wheat production from Fusarium ear blight. Abstracts CropWorld, London, 1-3 November 2010 .
Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight
C2 - Non-edited contributions to conferences
Brown, N. A., Urban, M., Van De Meene, A. and Hammond-Kosack, K. E. 2010. Be more specific! Using laser capture micro-dissection to investigate Fusarium ear blight. Abstracts 9th International Mycological Congress: the Biology of Fungi, Edinburgh, 1-6 August 2010 .
A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp
A - Papers appearing in refereed journals
Lowe, R. G. T., Allwood, J. W., Galster, A. M., Urban, M., Daudi, A., Canning, G., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2010. A combined 1H nuclear magnetic resonance and electrospray ionization-mass spectrometry analysis to understand the basal metabolism of plant-pathogenic Fusarium spp. Molecular Plant-Microbe Interactions. 23 (12), pp. 1605-1618. https://doi.org/10.1094/MPMI-04-10-0092
The Fusaria
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E. 2010. The Fusaria.
The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears
A - Papers appearing in refereed journals
Brown, N. A., Urban, M., Van De Meene, A. M. L. and Hammond-Kosack, K. E. 2010. The infection biology of Fusarium graminearum: defining the pathways of spikelet to spikelet colonisation in wheat ears. Fungal Biology. 114 (7), pp. 555-571. https://doi.org/10.1016/j.funbio.2010.04.006
A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum
A - Papers appearing in refereed journals
Baldwin, T. K., Gaffoor, I., Antoniw, J. F., Andries, C., Guenther, J., Urban, M., Hallen-Adams, H. E., Pitkin, J., Hammond-Kosack, K. E. and Trail, F. 2010. A partial chromosomal deletion caused by random plasmid integration resulted in a reduced virulence phenotype in Fusarium graminearum. Molecular Plant-Microbe Interactions. 23 (8), pp. 1083-1096. https://doi.org/10.1094/MPMI-23-8-1083
The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Antoniw, J. F., Freeman, A., Urban, M., Welham, S. J. and Beacham, A. 2010. The identification of a virulence factor-enriched micro-region in the Fusarium graminearum genome. Abstracts Fusarium Workshop, Amsterdam, 28-29 March 2010 .
Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides
C2 - Non-edited contributions to conferences
Cools, H. J., Parker, J. E., Motteram, J., Kelly, D. E., Lucas, J. A., Rudd, J. J., Kelly, S. L. and Fraaije, B. A. 2010. Functional characterisation of Mycosphaerella graminicola sterol 14alpha-demethylase (MgCYP51) variants resistant to azole fungicides. Abstracts 16th International Reinhardsbrunn Symposium: Modern Fungicides and Antifungal Compounds, Friedrichroda, 25-29 April 2010 .
A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation
A - Papers appearing in refereed journals
Baldwin, T. K., Urban, M., Brown, N. A. and Hammond-Kosack, K. E. 2010. A role for topoisomerase I in Fusarium graminearum and F. culmorum pathogenesis and sporulation. Molecular Plant-Microbe Interactions. 23 (5), pp. 566-577. https://doi.org/10.1094/MPMI-23-5-0566
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
A - Papers appearing in refereed journals
Ma, L-J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W-B., Woloshuk, C., Xie, X., Xu, J-R., Antoniw, J. F., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P., Danchin, E. G. J., Diener, A., Gale, L. R. and Hammond-Kosack, K. E. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464, pp. 367-373. https://doi.org/10.1038/nature08850
Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol)
D1 - Technical reports: non-confidential
Perovic, D., Kanyuka, K. and Ordon, F. 2010. Soil-borne cereal mosaic virus (SBCMV) resistance gene Sbm1 (Online protocol).
Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats
A - Papers appearing in refereed journals
Rudd, J. J., Antoniw, J. F., Marshall, R., Motteram, J., Fraaije, B. A. and Hammond-Kosack, K. E. 2010. Identification and characterisation of Mycosphaerella graminicola secreted or surface-associated proteins with variable intragenic coding repeats. Fungal Genetics and Biology. 47, pp. 19-32. https://doi.org/10.1016/j.fgb.2009.10.009
Pest wars - press paper
C2 - Non-edited contributions to conferences
Lucas, J. A., Field, L. M., Cools, H. J. and Hammond-Kosack, K. E. 2009. Pest wars - press paper. Pest Wars: British Science Festival, Guildford, 8 September 2009 .
Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Freeman, A., Desmouceaux, N., Urban, M. and Cuzick, A. 2009. Functional evaluation of plant defence signalling against Fusarium graminearum and F. culmorum in Arabidopsis floral tissue. Abstracts 14th International Congress on Molecular Plant-Microbe Interactions, Quebec, 19-23 July 2009 .
Molecular and genetic studies on Fusarium Ear Blight disease of wheat
C2 - Non-edited contributions to conferences
Hammond-Kosack, K. E., Kanyuka, K., Brown, N. A., Beacham, A. M., Cuzick, A., Antoniw, J. F. and Urban, M. 2009. Molecular and genetic studies on Fusarium Ear Blight disease of wheat. Abstracts 2009 National Fusarium Head Blight Forum, Orlando, 7-9 December 2009 .
Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Exploiting natural genetic diversity of barley germplasm to identify superior alleles of eIF4E conferring broad-spectrum virus resistance. Abstracts Rank Prize Funds Mini-Symposium on Domestication of Cereals and Exploitation of Genetic Diversity in Improvement, Grasmere, 21-24 September 2009 .
A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley
C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2009. A new rapid and relatively inexpensive method for mining in plant germplasm collections for novel alleles of agronomically important genes: a case study in barley. Abstracts 19th ITMI/3rd COST Tritigen Joint Workshop, Clermont-Ferrand, 31 August-4 September 2009 . pp. 34