PS: Resilience and Development
| Title | PS: Resilience and Development |
|---|---|
| Type | Research cluster |
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An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
A - Papers appearing in refereed journals
Clavijo, B. J., Venturini, L., Schudoma, C., Accinelli, G. G., Kaithakottil, G., Wright, J., Borrill, P., Kettleborough, G., Heavens, D., Chapman, H., Lipscombe, J., Barker, T., Lu, F. H., McKenzie, N., Raats, D., Ramirez-Gonzalez, R. H., Coince, A., Peel, N., Percival-Alwyn, L., Duncan, O., Trosch, J., Yu, G. T., Bolser, D. M., Namaati, G., Kerhornou, A., Spannagl, M., Gundlach, H., Haberer, G., Davey, R. P., Fosker, C., Di Palma, F., Phillips, A. L., Millar, A. H., Kersey, P. J., Uauy, C., Krasileva, K. V., Swarbreck, D., Bevan, M. W. and Clark, M. D. 2017. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Research. 27 (5), pp. 885-896. https://doi.org/10.1101/gr.217117.116
An integrated study of grain development of wheat (cv. Hereward)
A - Papers appearing in refereed journals
Shewry, P. R., Mitchell, R. A. C., Tosi, P., Wan, Y., Toscano-Underwood, C., Lovegrove, A., Freeman, J., Toole, G. A., Mills, E. N. C. and Ward, J. L. 2012. An integrated study of grain development of wheat (cv. Hereward). Journal of Cereal Science. 56, pp. 21-30. https://doi.org/10.1016/j.jcs.2011.11.007
An introduction to bioenergy
E - Books edited/written by staff member, alone/with others
Halford, N. G. 2015. An introduction to bioenergy. Imperial College Press, London.
Analysis of HMW glutenin subunits encoded by chromosome 1A of bread wheat (Triticum aestivum L.) indicates quantitative effects on grain quality
A - Papers appearing in refereed journals
Halford, N. G., Field, J. M., Blair, H., Urwin, P., Moore, K., Robert, L., Thompson, R., Flavell, R. B., Tatham, A. S. and Shewry, P. R. 1992. Analysis of HMW glutenin subunits encoded by chromosome 1A of bread wheat (Triticum aestivum L.) indicates quantitative effects on grain quality. Theoretical and Applied Genetics. 83 (3), pp. 373-378. https://doi.org/10.1007/BF00224285
Analysis of possible quality-related sequence variations in the 1D glutenin high molecular weight subunit genes of wheat.
C1 - Edited contributions to conferences/learned societies
Greene, F. C., Anderson, O. D., Yip, R. E., Halford, N. G., Malpica Romero, J. M. and Shewry, P. R. 1988. Analysis of possible quality-related sequence variations in the 1D glutenin high molecular weight subunit genes of wheat. Proceedings of the 7th International Wheat Genetics Symposium, Cambridge, 1988. Vol. 1. T.E. Miller & R.M.D. Koebner eds. pp. 735-740
Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs
A - Papers appearing in refereed journals
Plackett, A. R. G., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G. and Hedden, P. 2012. Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs. The Plant Cell. 24, pp. 941-960. https://doi.org/10.1105/tpc.111.095109
Analysis of the structures and functional properties of the HMW subunits of glutenin using protein engineering and expression in transgenic plants
C1 - Edited contributions to conferences/learned societies
Shewry, P. R., Buonocore, F., Bertini, L., Greenfield, J. J. A., Halford, N. G., Tatham, A. S., Rooke, L., Barro, F., Barcelo, P. and Lazzeri, P. A. 1996. Analysis of the structures and functional properties of the HMW subunits of glutenin using protein engineering and expression in transgenic plants. Wrigley, C. W. (ed.) Gluten '96. Proceedings 6th International Wheat Gluten Workshop, Sydney, 2-4 September 1996 . Royal Australian Chemical Institute, North Melbourne. pp. 180-183
Analysis of the structures and functional properties of the HMW subunits of glutenin using protein engineering and expression in transgenic plants
C1 - Edited contributions to conferences/learned societies
Shewry, P. R., Buonocore, F., Bertini, L., Greenfield, J., Halford, N. G., Tatham, A. S., Rooke, L., Barro, F., Barcelo, P. and Lazzeri, P. A. 1996. Analysis of the structures and functional properties of the HMW subunits of glutenin using protein engineering and expression in transgenic plants. Wrigley, C. W. (ed.) Proceedings 6th International Wheat Gluten Workshop and 46th Australian Cereal Chemistry Conference, Sydney, 2-4 September 1996 . Royal Australian Chemical Institute, North Melbourne. pp. 180-183
Annual Plant Reviews , Volume 24: Plant hormone signaling
E - Books edited/written by staff member, alone/with others
Hedden, P. and Thomas, S. G. (ed.) 2006. Annual Plant Reviews , Volume 24: Plant hormone signaling. Blackwell Publishing Oxford.
Annual Plant Reviews, Volume 49: The Gibberellins
E - Books edited/written by staff member, alone/with others
Hedden, P. and Thomas, S. G. (ed.) 2016. Annual Plant Reviews, Volume 49: The Gibberellins. Wiley-Blackwell Chichester, Sussex.
Antisense expression of a SnRK1 protein kinase sequence in transgenic barley (Hordeum vulgare L.): evidence of an important role for SnRK1 protein kinase in carbohydrate metabolism during pollen development
C1 - Edited contributions to conferences/learned societies
Zhang, Y., Barcelo, P., Shewry, P. R., Jones, H. D., Davey, M. R., Lazzeri, P. A. and Halford, N. G. 2000. Antisense expression of a SnRK1 protein kinase sequence in transgenic barley (Hordeum vulgare L.): evidence of an important role for SnRK1 protein kinase in carbohydrate metabolism during pollen development. Barley Genetics VIII: Proceedings 8th International Barley Genetics Symposium, Adelaide, October 2000 . pp. 134-136
Antisense SNF1-related (SnRK1) protein kinase gene represses transient activity of an alpha-amylase (alpha-Amy2) gene promoter in cultured wheat embryos
A - Papers appearing in refereed journals
Laurie, S., Mckibbin, R. S. and Halford, N. G. 2003. Antisense SNF1-related (SnRK1) protein kinase gene represses transient activity of an alpha-amylase (alpha-Amy2) gene promoter in cultured wheat embryos. Journal of Experimental Botany. 54, pp. 739-747.
Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior
A - Papers appearing in refereed journals
Beale, M. H., Birkett, M. A., Bruce, T. J. A., Chamberlain, K., Field, L. M., Huttly, A. K., Martin, J. L., Parker, R., Phillips, A. L., Pickett, J. A., Prosser, I. M., Shewry, P. R., Smart, L. E., Wadhams, L. J., Woodcock, C. M. and Zhang, Y. 2006. Aphid alarm pheromone produced by transgenic plants affects aphid and parasitoid behavior. Proceedings of the National Academy of Sciences. 103, pp. 10509-10513. https://doi.org/10.1073/pnas.0603998103
Arabidopsis sucrose non-fermenting-1-related protein kinase-1 and calcium-dependent protein kinase phosphorylate conserved target sites in ABA response element binding proteins
A - Papers appearing in refereed journals
Zhang, Y., Andralojc, P. J., Hey, S. J., Primavesi, L. F., Specht, M., Koehler, J., Parry, M. A. J. and Halford, N. G. 2008. Arabidopsis sucrose non-fermenting-1-related protein kinase-1 and calcium-dependent protein kinase phosphorylate conserved target sites in ABA response element binding proteins. Annals of Applied Biology - AAB. 153 (3), pp. 401-409. https://doi.org/10.1111/j.1744-7348.2008.00302.x
Are GM Crops for Yield and Resilience Possible?
A - Papers appearing in refereed journals
Paul, M. J., Nuccio, M. L. and Basu, S. S. 2018. Are GM Crops for Yield and Resilience Possible? Trends in Plant Science. 23 (1), pp. 10-16. https://doi.org/10.1016/j.tplants.2017.09.007
Asparagine in plants
A - Papers appearing in refereed journals
Lea, P. J., Sodek, L., Parry, M. A. J., Shewry, P. R. and Halford, N. G. 2007. Asparagine in plants. Annals of Applied Biology - AAB. 150 (1), pp. 1-26. https://doi.org/10.1111/j.1744-7348.2006.00104.x
AtGCN2 is involved in response to limitation of amino acid biosynthesis in arabidopsis plants
C2 - Non-edited contributions to conferences
Zhang, Y., Paul, M. J., Parry, M. A. J. and Halford, N. G. 2006. AtGCN2 is involved in response to limitation of amino acid biosynthesis in arabidopsis plants. Abstracts 8th International Congress of Plant Molecular Biology, Adelaide, 20-25 August 2006 . pp. 217
Beta vulgaris mRNA for SNF1-related protein kinase
K - Protein or DNA sequences submitted to database
Halford, N. G. 1997. Beta vulgaris mRNA for SNF1-related protein kinase.
Biomass and energy crops IV (Aspects of Applied Biology 112)
E - Books edited/written by staff member, alone/with others
Booth, E., Halford, N. G., Shield, I. F., Taylor, G. and Turley, D. Voigt, T. (ed.) 2011. Biomass and energy crops IV (Aspects of Applied Biology 112). Association of Applied Biologists (AAB) Wellesbourne Warwick .
Carbohydrate signalling in the Poaceae
C2 - Non-edited contributions to conferences
Macrae, E., Paul, M. J., Thorpe, M. and Minchin, P. 2000. Carbohydrate signalling in the Poaceae. Abstracts Australian and New Zealand Societies of Plant Physiology Biochemistry and Molecular Biology Meeting, Wellington, 2000 .
Carbon flux in transgenic sugar beet
B - Book chapters etc edited externally
Monger, W. A., Harrington, P. J., Acaster, M. A., Halford, N. G., Ainsworth, C. C. and Thomas, T. H. 1996. Carbon flux in transgenic sugar beet. in: Fenwick, G. R., Khokhar, S., Richards, R. L. and Hedley, C. (ed.) Agrifood quality - an interdisciplinary approach Royal Society of Chemistry (RSC), Cambridge. pp. 12-14
Carbon metabolite feedback regulation of leaf photosynthesis and development
A - Papers appearing in refereed journals
Paul, M. J. and Pellny, T. K. 2003. Carbon metabolite feedback regulation of leaf photosynthesis and development. Journal of Experimental Botany. 54, pp. 539-547. https://doi.org/10.1093/jxb/erg052
Carbon metabolite sensing and signalling
A - Papers appearing in refereed journals
Halford, N. G. and Paul, M. J. 2003. Carbon metabolite sensing and signalling. Plant Biotechnology Journal. 1 (6), pp. 381-398. https://doi.org/10.1046/j.1467-7652.2003.00046.x
Carbon metabolite sensing and signalling: the role of the trehalose pathway
C2 - Non-edited contributions to conferences
Paul, M. J. 2005. Carbon metabolite sensing and signalling: the role of the trehalose pathway. Abstracts 11th Congress of the European Society for Photobiology, Aix-les-Bains, 3-8 September 2005 . pp. 96
Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome
A - Papers appearing in refereed journals
Pellny, T. K., Lovegrove, A., Freeman, J., Tosi, P., Love, C. G., Knox, J. P., Shewry, P. R. and Mitchell, R. A. C. 2012. Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. Plant Physiology. 158, pp. 612-627. https://doi.org/10.1104/pp.111.189191
Cereal asparagine synthetase genes
A - Papers appearing in refereed journals
Raffan, S. and Halford, N. G. 2020. Cereal asparagine synthetase genes. Annals of Applied Biology - AAB. https://doi.org/10.1111/aab.12632
Cereal seed storage proteins: structures, properties and role in grain utilization
A - Papers appearing in refereed journals
Shewry, P. R. and Halford, N. G. 2002. Cereal seed storage proteins: structures, properties and role in grain utilization. Journal of Experimental Botany. 53 (370), pp. 947-958. https://doi.org/10.1093/jexbot/53.370.947
Challenges and opportunities for using wheat for biofuel production
B - Book chapters etc edited externally
Shewry, P. R., Freeman, J., Wilkinson, M. D., Pellny, T. K. and Mitchell, R. A. C. 2011. Challenges and opportunities for using wheat for biofuel production. in: Halford, N. G. and Karp, A. (ed.) Energy Crops London Royal Society of Chemistry (RSC). pp. 13-26 Chapter 2
Challenges and opportunities for using wheat for biofuel production
B - Book chapters etc edited externally
Shewry, P. R., Freeman, J., Wilkinson, M. D., Pellny, T. K. and Mitchell, R. A. C. 2011. Challenges and opportunities for using wheat for biofuel production. in: Karp, A. and Halford, N. G. (ed.) Energy crops Royal Society of Chemistry (RSC), Cambridge. pp. 13-26
Changes in free amino acid concentration in rye grain in response to nitrogen and sulphur availability, and expression analysis of genes involved in asparagine metabolism
A - Papers appearing in refereed journals
Postles, J., Curtis, T. Y., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2016. Changes in free amino acid concentration in rye grain in response to nitrogen and sulphur availability, and expression analysis of genes involved in asparagine metabolism. Frontiers in Plant Science. 7, p. 917. https://doi.org/10.3389/fpls.2016.00917
Changes in free amino acids and sugars in potatoes due to sulfate fertilization and the effect on acrylamide formation
A - Papers appearing in refereed journals
Elmore, J. S., Mottram, D. S., Muttucumaru, N., Dodson, A. T., Parry, M. A. J. and Halford, N. G. 2007. Changes in free amino acids and sugars in potatoes due to sulfate fertilization and the effect on acrylamide formation. Journal of Agricultural and Food Chemistry - JAFC. 55, pp. 5363-5366. https://doi.org/10.1021/jf070447s
Changes in protein secondary structure during gluten deformation studied by dynamic Fourier transform infrared spectroscopy
A - Papers appearing in refereed journals
Wellner, N., Mills, E. N. C., Brownsey, G., Wilson, R. H., Brown, N. A., Freeman, J., Halford, N. G., Shewry, P. R. and Belton, P. S. 2005. Changes in protein secondary structure during gluten deformation studied by dynamic Fourier transform infrared spectroscopy. Biomacromolecules. 6 (1), pp. 255-261. https://doi.org/10.1021/bm049584d
Changes in the concentrations and transcripts for gibberellins and other hormones in a growing leaf and roots of wheat seedlings in response to water restriction
A - Papers appearing in refereed journals
Ptoskova, K., Szecowka, M., Jaworek, P., Tarkowska, D., Petrik, I., Pavlovic, I., Novak, O., Thomas, S. G., Phillips, A. L. and Hedden, P. 2022. Changes in the concentrations and transcripts for gibberellins and other hormones in a growing leaf and roots of wheat seedlings in response to water restriction. BMC Plant Biology. 22 (1), p. 284. https://doi.org/10.1186/s12870-022-03667-w
Changes in the relationship between photosynthetic electron transport and carbon metabolism in transgenic tobacco with a reduced complement of phosphoribulokinase
C2 - Non-edited contributions to conferences
Habash, D. Z., Parry, M. A. J., Parmar, S., Paul, M. J., Driscoll, S. P., Lawlor, D. W. and Gray, J. C. 1996. Changes in the relationship between photosynthetic electron transport and carbon metabolism in transgenic tobacco with a reduced complement of phosphoribulokinase. Proceedings Molecular Physiology Conference, INRA, Versailles, July 1995 .
Characterisation of Grains and Flour Fractions from Field Grown Transgenic Oil-Accumulating Wheat Expressing Oat WRI1
A - Papers appearing in refereed journals
Snell, P., Wilkinson, M. D., Taylor, G. J., Hall, S., Sharma, S., Sirijovski, N., Hansson, M., Shewry, P. R., Hofvander, P. and Grimberg, A. 2022. Characterisation of Grains and Flour Fractions from Field Grown Transgenic Oil-Accumulating Wheat Expressing Oat WRI1. Plants - Basel. 11 (7), p. 889. https://doi.org/10.3390/plants11070889
Characterization of a Wheat Breeders’ Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)
A - Papers appearing in refereed journals
Allen, A. M., Winfield, M. O., Burridge, A. J., Downie, R. C., Benbow, H. R., Barker, G. L. A., Wilkinson, P. A., Coghill, J., Waterfall, C., Davassi, A., Scopes, G., Pirani, A., Webster, T., Brew, F., Bloor, C., Griffiths, S., Bentley, A. R., Alda, M., Jack, P., Phillips, A. L. and Edwards, K. J. 2017. Characterization of a Wheat Breeders’ Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum). Plant Biotechnology Journal. 15 (3), pp. 390-401. https://doi.org/10.1111/pbi.12635
Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth
A - Papers appearing in refereed journals
Bhattacharya, A., Kourmpetli, S., Ward, D. A., Thomas, S. G., Gong, F., Powers, S. J., Carrera, E., Taylor, B., Nunez De Caceres Gonzalez, F., Tudzynski, B., Phillips, A. L., Davey, M. R. and Hedden, P. 2012. Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth. Plant Physiology. 160, pp. 837-845. https://doi.org/10.1104/pp.112.201756
Chemical intervention in plant sugar signalling increases yield and resilience
A - Papers appearing in refereed journals
Griffiths, C. A., Sagar, R., Geng, Y., Primavesi, L. F., Patel, M. K., Passarelli, M. K., Gilmore, I. S., Steven, R. T., Bunch, J., Paul, M. J. and Davis, B. G. 2016. Chemical intervention in plant sugar signalling increases yield and resilience. Nature. 540, pp. 574-578. https://doi.org/10.1038/nature20591
Chimaeras of the Rubisco large subunit from wheat and Anacystis do not assemble into active enzyme in E. coli
A - Papers appearing in refereed journals
Kettleborough, C. A., Parry, M. A. J., Keys, A. J. and Phillips, A. L. 1990. Chimaeras of the Rubisco large subunit from wheat and Anacystis do not assemble into active enzyme in E. coli. Journal of Experimental Botany. 41, pp. 1287-1292.
Chimeric Rubisco - genetic manipulation of photosynthesis to reduce crop fertilizer requirements
C2 - Non-edited contributions to conferences
Colliver, S. P., Madgwick, P. J., Bainbridge, G., Banks, F. M., Paul, M. J. and Parry, M. A. J. 1996. Chimeric Rubisco - genetic manipulation of photosynthesis to reduce crop fertilizer requirements. Oxford University Press (OUP) Oxford.