PS: Resilience and Development
| Title | PS: Resilience and Development |
|---|---|
| Type | Research cluster |
Outputs
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Global wheat production could benefit from closing the genetic yield gap
A - Papers appearing in refereed journals
Senapati, N., Semenov, M. A., Halford, N. G., Hawkesford, M. J., Asseng, S., Cooper, M., Ewert, F., Ittersum, M. K. V., Martre, P., Olesen, J. E., Reynolds, M., Rotter, R. P. and Webber, H. 2022. Global wheat production could benefit from closing the genetic yield gap. Nature Food. 3 (July), pp. 532-541. https://doi.org/10.1038/s43016-022-00540-9
Understanding the Relationships between Free Asparagine in Grain and Other Traits to Breed Low-Asparagine Wheat
A - Papers appearing in refereed journals
Oddy, J., Raffan, S., Wilkinson, M. D., Elmore, J. S. and Halford, N. G. 2022. Understanding the Relationships between Free Asparagine in Grain and Other Traits to Breed Low-Asparagine Wheat. Plants - Basel. 11 (5), p. 669. https://doi.org/10.3390/plants11050669
Phosphorylation of the alpha-subunit of plant eukaryotic initiation factor 2 prevents its association with polysomes but does not considerably suppress protein synthesis
A - Papers appearing in refereed journals
Zhigailov, A. V., Stanbekova, G. E., Nizkorodova, A. S., Galiakparova, N. N., Gritsenko, D. A., Polimbetova, N. S., Halford, N. G. and Iskakov, B. K. 2022. Phosphorylation of the alpha-subunit of plant eukaryotic initiation factor 2 prevents its association with polysomes but does not considerably suppress protein synthesis. Plant Science. 317, p. 111190. https://doi.org/10.1016/j.plantsci.2022.111190
Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species
A - Papers appearing in refereed journals
Tomaszewska, P., Vorontsova, M. S., Renvoize, S. A., Ficinski, S. Z., Tohme, J., Schwarzacher, T., Castiblanco, V., De Vega, J. J., Mitchell, R. A. C. and Heslop-Harrison, J. S. 2021. Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species. Annals of Botany. p. mcab147. https://doi.org/10.1093/aob/mcab147
Elucidating the role of the RHT-1 protein in regulation of gibberellin signalling in the aleurone of wheat
F - Theses
Sokolowska, P. 2021. Elucidating the role of the RHT-1 protein in regulation of gibberellin signalling in the aleurone of wheat. F - Theses
Nitrate signaling promotes plant growth by upregulating gibberellin biosynthesis and destabilization of DELLA proteins
A - Papers appearing in refereed journals
Camut, L., Gallova, B., Jilli, L., Sirlin-Josserand, M., Carrera, E., Sakvarelidze-Achard, L., Ruffel, S., Krouk, G., Thomas, S. G., Hedden, P., Phillips, A. L., Daviere, J-M. and Achard, P. 2021. Nitrate signaling promotes plant growth by upregulating gibberellin biosynthesis and destabilization of DELLA proteins. Current Biology. 31 (22), pp. 4971-4982. https://doi.org/10.1016/j.cub.2021.09.024
My lab unlocked: Professor Nigel Halford FRSB
G - Articles in popular magazines and other technical publications
Halford, N. G. 2021. My lab unlocked: Professor Nigel Halford FRSB. The Biologist.
A novel light interception trait of a hybrid rice ideotype indicative of leaf to panicle ratio
A - Papers appearing in refereed journals
Xiao, F., Li, W., Yang, Z., Cheng, W., Gao, S., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2021. A novel light interception trait of a hybrid rice ideotype indicative of leaf to panicle ratio. Field Crops Research. 274, p. 108338. https://doi.org/10.1016/j.fcr.2021.108338
What are the regulatory targets for intervention in assimilate partitioning to improve crop yield and resilience?
A - Papers appearing in refereed journals
Paul, M. J. 2021. What are the regulatory targets for intervention in assimilate partitioning to improve crop yield and resilience? Journal of Plant Physiology. 266, p. 153537. https://doi.org/10.1016/j.jplph.2021.153537
Improving photosynthetic metabolism for crop yields: what is going to work?
A - Papers appearing in refereed journals
Paul, M. J. 2021. Improving photosynthetic metabolism for crop yields: what is going to work? Frontiers in Plant Science. 12 (September), p. 743862. https://doi.org/10.3389/fpls.2021.743862
Flow Cytometry-Based Determination of Ploidy from Dried Leaf Specimens in Genomically Complex Collections of the Tropical Forage Grass Urochloa s. l.
A - Papers appearing in refereed journals
Tomaszewska, P., Pellny, T. K., Hernandez, L. M., Mitchell, R. A. C., Castiblanco, V., De Vega, J. J., Schwarzacher, T. and Heslop-Harrison, P. 2021. Flow Cytometry-Based Determination of Ploidy from Dried Leaf Specimens in Genomically Complex Collections of the Tropical Forage Grass Urochloa s. l. Genes. 12 (7), p. 957. https://doi.org/10.3390/genes12070957
RNAi suppression of xylan synthase genes in wheat starchy endosperm
A - Papers appearing in refereed journals
Wilkinson, M. D., Kosik, O., Halsey, K., Walpole, H., Evans, J., Wood, A. J., Ward, J. L., Mitchell, R. A. C., Lovegrove, A. and Shewry, P. R. 2021. RNAi suppression of xylan synthase genes in wheat starchy endosperm. PLOS ONE. 16 (8), p. e0256350. https://doi.org/10.1371/journal.pone.0256350
Rapid Generation and Analysis of a Barley Doubled Haploid Line with Higher Nitrogen Use Efficiency than Parental Lines by F1 Microspore Embryogenesis
A - Papers appearing in refereed journals
Xu, H., Li, Y., Gao, R., Xu, R., Guo, G., Lu, R., Halford, N. G., Chen, Z. and Liu, C. 2021. Rapid Generation and Analysis of a Barley Doubled Haploid Line with Higher Nitrogen Use Efficiency than Parental Lines by F1 Microspore Embryogenesis. Plants - Basel. 10 (8), p. 1588. https://doi.org/10.3390/plants10081588
Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact
A - Papers appearing in refereed journals
Hanley, S. J., Pellny, T. K., De Vega, J. J., Castiblanco, V., Arango, J., Eastmond, P. J., Heslop-Harrison, J. S. and Mitchell, R. A. C. 2021. Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact. Annals of Botany. 128 (5), pp. 627-637. https://doi.org/10.1093/aob/mcab101
Dissection of environmental and physiological effects on the temperature difference between superior and inferior spikelets within a rice panicle
A - Papers appearing in refereed journals
Li, Y., Zhou, Q., He, M., Xu, H., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2021. Dissection of environmental and physiological effects on the temperature difference between superior and inferior spikelets within a rice panicle. The Crop Journal. 9, pp. 1098-1107. https://doi.org/10.1016/j.cj.2020.10.016
Improving nitrogen use efficiency through overexpression of alanine aminotransferase in rice, wheat, and barley
A - Papers appearing in refereed journals
Tiong, J. W., Sharma, N., Sampath, R., MacKenzie, N., Watanabe, S., Metot, C., Lu, Z., Skinner, W., Lu, Y., Kridl, J., Baumann, U., Heuer, S., Kaiser, B. and Okamoto, M. 2021. Improving nitrogen use efficiency through overexpression of alanine aminotransferase in rice, wheat, and barley. Frontiers in Plant Science. 12, p. 628521. https://doi.org/10.3389/fpls.2021.628521
Vulnerability of European wheat to extreme heat and drought around flowering under future climate
A - Papers appearing in refereed journals
Senapati, N., Halford, N. G. and Semenov, M. A. 2021. Vulnerability of European wheat to extreme heat and drought around flowering under future climate. Environmental Research Letters. 16 (2), p. 024052. https://doi.org/10.1088/1748-9326/abdcf3
N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles
A - Papers appearing in refereed journals
Thomas, S. G., Van De Velde, K., Heyse, F., Kaspar, R., Van Der Straeten, D. and Rohde, A. 2021. N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles. Molecular Plant. 14 (1), pp. 1-9. https://doi.org/10.1016/j.molp.2021.01.002
Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain
A - Papers appearing in refereed journals
Gonzalez-Thuillier, I., Pellny, T. K., Tosi, P., Mitchell, R. A. C., Haslam, R. P. and Shewry, P. R. 2021. Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain. Journal of Cereal Science. 98, p. 103167. https://doi.org/10.1016/j.jcs.2021.103167
Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment
A - Papers appearing in refereed journals
Chen, Z., Zhou, L., Jiang, P., Lu, R., Halford, N. G. and Liu, C. 2021. Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment . BMC Genomics. 22 (article), p. 300. https://doi.org/10.1186/s12864-021-07601-6
Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality
A - Papers appearing in refereed journals
Oddy, J., Alarcon-Reverte, R., Wilkinson, M. D., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., Moreira de Almeida, I., Cryer, N., Halford, N. G. and Pearce, S. 2021. Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality. BMC Plant Biology. 21 (1), p. 302. https://doi.org/10.1186/s12870-021-03058-7
Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2
A - Papers appearing in refereed journals
Raffan, S., Sparks, C. A., Huttly, A. K., Hyde, L., Martignago, D., Mead, A., Hanley, S. J., Wilkinson, P., Barker, G., Edwards, K. J., Curtis, T. Y., Usher, S. L., Kosik, O. and Halford, N. G. 2021. Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2 . Plant Biotechnology Journal. 19 (8), pp. 1602-1613. https://doi.org/10.1111/pbi.13573
KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species
A - Papers appearing in refereed journals
Hassani-Pak, K., Singh, A., Brandizi, M., Hearnshaw, J., Parsons, J. D., Amberkar, S., Phillips, A. L., Doonan, J. H. and Rawlings, C. J. 2021. KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13583
Progress on reducing acrylamide levels in potato crisps in Europe, 2002 to 2019
A - Papers appearing in refereed journals
Powers, S. J., Mottram, D. S., Curtis, A. and Halford, N. G. 2021. Progress on reducing acrylamide levels in potato crisps in Europe, 2002 to 2019. Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment. 38 (5), pp. 782-806. https://doi.org/10.1080/19440049.2020.1871083
Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel
A - Papers appearing in refereed journals
Lyra, D. H., Griffiths, C. A., Watson, A., Joynson, R., Molero, G., Igna, A. A., Hassani-Pak, K., Reynolds, M. P., Hall, A. and Paul, M. J. 2021. Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. Food and Energy Security. p. e292. https://doi.org/10.1002/fes3.292
Wheat growth responses to soil mechanical impedance are dependent on phosphorus supply
A - Papers appearing in refereed journals
Wang, X., Shen, J., Hedden, P., Phillips, A. L., Thomas, S. G., Ge, Y., Ashton, R. W. and Whalley, W. R. 2021. Wheat growth responses to soil mechanical impedance are dependent on phosphorus supply. Soil & Tillage Research. 205, p. 104754. https://doi.org/10.1016/j.still.2020.104754
Genome Editing for Low-Acrylamide Wheat
F - Theses
Raffan, S. 2020. Genome Editing for Low-Acrylamide Wheat. F - Theses
The TaCslA12 gene expressed in the wheat grain endosperm synthesizes wheat-like mannan when expressed in yeast and Arabidopsis
A - Papers appearing in refereed journals
Verhertbruggen, Y., Bouder, A., Vigouroux, J., Alvarado, C., Geairon, A., Guillon, F., Wilkinson, M. D., Stritt, F., Pauly, M., Lee, M. Y., Mortimer, J. C., Scheller, H. V., Mitchell, R. A. C., Voiniciuc, C., Saulnier, L. and Chateigner-Boutin, A.-L.. 2020. The TaCslA12 gene expressed in the wheat grain endosperm synthesizes wheat-like mannan when expressed in yeast and Arabidopsis . Plant Science. 302, p. 110693. https://doi.org/10.1016/j.plantsci.2020.110693
Dynamics of dry matter accumulation in internodes indicates source and sink relations during grain-filling stage of japonica rice
A - Papers appearing in refereed journals
Xu, H., Wang, Z., Xiao, F., Yang, L., Li, G., Ding, Y., Paul, M. J., Li, W. and Liu, Z. 2020. Dynamics of dry matter accumulation in internodes indicates source and sink relations during grain-filling stage of japonica rice. Field Crops Research. (Article), p. 108009. https://doi.org/10.1016/j.fcr.2020.108009
Mapping sites of gibberellin biosynthesis in the Arabidopsis root tip
A - Papers appearing in refereed journals
Barker, R., Garcia, M. N. F., Powers, S. J., Vaughan, S., Bennett, M. J., Phillips, A. L., Thomas, S. G. and Hedden, P. 2020. Mapping sites of gibberellin biosynthesis in the Arabidopsis root tip. New Phytologist. https://doi.org/10.1111/NPH.16967
Suppression of a BAHD acyltransferase decreases p-coumaroyl on arabinoxylan and improves biomass digestibility in the model grass Setaria viridis
A - Papers appearing in refereed journals
Mota, T. R., De Souza, W. R., Oliveira, D. M., Martins, P. K., Sampaio, B. L., Vinecky, F., Ribeiro, A. P., Duarte, K. E., Pacheco, T. F., De K. V. Monteiro, N., Campanha, R. B., Marchiosi, R., Vieriea, D. S., Kobayashi, A. K., De O Molinari, P. A., Ferrarese-Filho, O., Mitchell, R. A. C., Molinari, H. B. and Dos Santos, W. D. 2020. Suppression of a BAHD acyltransferase decreases p-coumaroyl on arabinoxylan and improves biomass digestibility in the model grass Setaria viridis. Plant Journal. p. 15046. https://doi.org/10.1111/tpj.15046
Trehalose 6-phosphate signalling and impact on crop yield
A - Papers appearing in refereed journals
Paul, M. J., Watson, A. and Griffiths, C. A. 2020. Trehalose 6-phosphate signalling and impact on crop yield. Biochemical Society Transactions. 48 (5), pp. 2127-2137. https://doi.org/10.1042/BST20200286
Effect of Plant Growth Promoting Bacteria on the Growth of Wheat Seedlings Subjected to Phosphate Starvation
A - Papers appearing in refereed journals
Cataldi, M. P., Heuer, S., Mauchline, T. H., Wilkinson, M. D., Masters-Clark, E., Di Benedetto, N. A., Corbo, M. R. and Flagella, Z. 2020. Effect of Plant Growth Promoting Bacteria on the Growth of Wheat Seedlings Subjected to Phosphate Starvation . Agronomy. 10 (7), p. 978. https://doi.org/10.3390/agronomy10070978
Temporal and spatial variations of carbon isotope signature reveal substantial contribution of bracts and internode assimilates to grain filling of japonica rice
A - Papers appearing in refereed journals
Jiang, M., Xu, H., Yang, N., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2020. Temporal and spatial variations of carbon isotope signature reveal substantial contribution of bracts and internode assimilates to grain filling of japonica rice. The Crop Journal. https://doi.org/10.1016/j.cj.2020.06.011
Leaf to panicle ratio (LPR): a new physiological trait indicative of source and sink relation in japonica rice based on deep learning
A - Papers appearing in refereed journals
Yang, Z., Gao, S., Xiao, F., Li, Y., Ding, Y., Guo, Q., Paul, M. J. and Liu, Z. 2020. Leaf to panicle ratio (LPR): a new physiological trait indicative of source and sink relation in japonica rice based on deep learning. Plant Methods. 16, p. 117. https://doi.org/10.1186/s13007-020-00660-y
Misexpression of a transcriptional repressor candidate provides a molecular mechanism for the suppression of awns by Tipped 1 in wheat.
A - Papers appearing in refereed journals
Wurschum, T., Jahne, F., Phillips, A. L., Langer, S. M., Longin, C. F. H., Tucker, M. R. and Leiser, W. L. 2020. Misexpression of a transcriptional repressor candidate provides a molecular mechanism for the suppression of awns by Tipped 1 in wheat. Journal of Experimental Botany. 71 (12), p. 3428–3436. https://doi.org/10.1093/jxb/eraa106
Combining yield potential and drought resilience in a spring wheat diversity panel
A - Papers appearing in refereed journals
Griffiths, C. A., Reynolds, M. and Paul, M. J. 2020. Combining yield potential and drought resilience in a spring wheat diversity panel. Food and Energy Security. https://doi.org/10.1002/fes3.241
The case for improving crop carbon sink strength or plasticity for a CO2 rich future
A - Papers appearing in refereed journals
Dingkuhn, M., Luquet, D., Fabre, D., Muller, B., Yin, X. and Paul, M. J. 2020. The case for improving crop carbon sink strength or plasticity for a CO2 rich future. Current Opinion in Plant Biology. 56, p. 259–272. https://doi.org/10.1016/j.pbi.2020.05.012
Stress, nutrients and genotype - understanding and managing asparagine accumulation in wheat grain.
A - Papers appearing in refereed journals
Oddy, J., Raffan, S., Wilkinson, M. D., Elmore, J. S. and Halford, N. G. 2020. Stress, nutrients and genotype - understanding and managing asparagine accumulation in wheat grain. CABI Agriculture and Bioscience. 1, p. 10. https://doi.org/10.1186/s43170-020-00010-x
Cereal asparagine synthetase genes
A - Papers appearing in refereed journals
Raffan, S. and Halford, N. G. 2020. Cereal asparagine synthetase genes. Annals of Applied Biology - AAB. https://doi.org/10.1111/aab.12632