Computational and Analytical Sciences
| Title | Computational and Analytical Sciences |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Rawlings |
| Executive Assistant | Sally Murdoch |
Outputs
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Analysis of time series
B - Book chapters etc edited externally
Tunnicliffe Wilson, G. and Welham, S. J. 2002. Analysis of time series. in: Payne, R. W. (ed.) Guide to GenStat release 6.1. Part 2. Statistics VSN International, Hemel Hempstead. pp. 705-788
Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis
A - Papers appearing in refereed journals
Van Den Berg, F., Van Den Bosch, F., Powers, S. J. and Shaw, M. W. 2008. Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis. Plant Pathology. 57 (6), pp. 1009-1016. https://doi.org/10.1111/j.1365-3059.2008.01865.x
Application of metabolomics and molecular networking in investigating the chemical profile and antitrypanosomal activity of British bluebells ( Hyacinthoides non-scripta )
A - Papers appearing in refereed journals
Raheem, D., Tawfike, A. F, Abdulmohsen, U., Edrada-Ebel, R. and Fitzsimmons-Thoss, V. 2019. Application of metabolomics and molecular networking in investigating the chemical profile and antitrypanosomal activity of British bluebells ( Hyacinthoides non-scripta ). Scientific Reports. 9 (1), p. 2547. https://doi.org/10.1038/s41598-019-38940-w
Are GM and conventionally bred cereals really different?
A - Papers appearing in refereed journals
Shewry, P. R., Baudo, M., Lovegrove, A., Powers, S. J., Napier, J. A., Ward, J. L., Baker, J. M. and Beale, M. H. 2007. Are GM and conventionally bred cereals really different? Trends in Food Science and Technology. 18, pp. 201-209. https://doi.org/10.1016/j.tifs.2006.12.010
Aspects of behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Pickett, J. A., Blackshaw, R. and Kerry, B. R. 2010. Aspects of behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium. Abstracts 30th International Symposium of the European Society of Nematologists, Vienna, 19-23 September 2010 . pp. 157
Aspects of the behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Blackshaw, R. and Pickett, J. A. 2011. Aspects of the behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium. Abstracts SEE11 Joint Meeting of the Royal Entomological Society of London and the Soil Ecology Society, Plymouth, 14-16 September 2011 .
ASREML estimates variance matrices from multivariate data using the animal model
C1 - Edited contributions to conferences/learned societies
Gilmour, A. R., Thompson, R., Cullis, B. R. and Welham, S. J. 2002. ASREML estimates variance matrices from multivariate data using the animal model. Proceedings 7th World Congress on Genetics Applied to Livestock Production, Montpellier, 19-23 August 2002 . pp. 28-05
ASREML user guide release 1.0
D1 - Technical reports: non-confidential
Gilmour, A. R., Gogel, B. J., Cullis, B. R., Welham, S. J. and Thompson, R. 2002. ASREML user guide release 1.0. VSN International, Hemel Hempstead.
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
A - Papers appearing in refereed journals
Lysenko, A., Defoin-Platel, M., Hassani-Pak, K., Taubert, J., Hodgman, C., Rawlings, C. J. and Saqi, M. 2011. Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics. 12, p. 203 (14pp). https://doi.org/10.1186/1471-2105-12-203
Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Roberts, R., Powers, S. J. and Hirsch, P. R. 2014. Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods. Letters in Applied Microbiology. 59 (2), pp. 238-246. https://doi.org/10.1111/lam.12270
Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology
A - Papers appearing in refereed journals
Hallingbäck, H. R., Fogelqvist, J., Powers, S. J., Turrion-Gomez, J., Rossiter, R., Amey, J., Martin, T., Weih, M., Gyllenstrand, N., Karp, A., Lagercrantz, U., Hanley, S. J., Berlin, S. and Rönnberg-Wästljung, A-C. 2016. Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology. Global Change Biology. Bioenergy. 8 (3), pp. 670-685. https://doi.org/10.1111/gcbb.12280
Avoidance of conspecific odour by carabid beetles: a mechanism for the emergence of scale-free searching patterns
A - Papers appearing in refereed journals
Guy, A. G., Bohan, D. A., Powers, S. J. and Reynolds, A. M. 2008. Avoidance of conspecific odour by carabid beetles: a mechanism for the emergence of scale-free searching patterns. Animal Behaviour. 76, pp. 585-591. https://doi.org/10.1016/j.anbehav.2008.04.004
Back trajectories and DNA-based species-specific detection allow tracking the transport of fungi in air masses – a case study of Leptosphaeria biglobosa spore transport from Jutland Peninsula to NW Poland
C1 - Edited contributions to conferences/learned societies
Grinn-Gofron, A., Sadys, M., Kaczmarek, J., Bednarz, A., Pawłowska, S. and Jedrzejczak-Czechowicz, M. 2016. Back trajectories and DNA-based species-specific detection allow tracking the transport of fungi in air masses – a case study of Leptosphaeria biglobosa spore transport from Jutland Peninsula to NW Poland. Proceedings 6th European Symposium on Aerobiology, 18-2 July, Lyon, France, 2016. pp. Poster 2449
Back-trajectory modelling and DNA-based species-specific detection methods allow tracking of fungal spore transport in air masses
A - Papers appearing in refereed journals
Grinn-Gofron, A., Sadys, M., Kaczmarek, J., Bednarz, A., Pawłowska, S. and Jedryczka, M. 2016. Back-trajectory modelling and DNA-based species-specific detection methods allow tracking of fungal spore transport in air masses. Science of the Total Environment. 571 (15 November), pp. 658-669. https://doi.org/10.1016/j.scitotenv.2016.07.034
Bayesian analysis and prediction of hybrid performance
A - Papers appearing in refereed journals
Alves, F. C., Granato, I. S. C., Galli, g, Lyra, D. H., Fritsche-Neto, R. and De los Campos, G. 2019. Bayesian analysis and prediction of hybrid performance. Plant Methods. 15, p. 14. https://doi.org/10.1186/s13007-019-0388-x
Behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Blackshaw, R. and Pickett, J. A. 2010. Behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium. Abstracts AAB Conference on Advances in Nematology, London, 14 December 2010 .
Behavioural responses by slugs to chemicals from a generalist predator
A - Papers appearing in refereed journals
Armsworth, C. G., Bohan, D. A., Powers, S. J., Glen, D. M. and Symondson, W. O. C. 2005. Behavioural responses by slugs to chemicals from a generalist predator. Animal Behaviour. 69, pp. 805-811.
Biological and physiological aspects in the host-parasite relationship of the nematophagous fungus Pochonia chlamydosporia
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Esteves, I., Powers, S. J. and Kerry, B. R. 2011. Biological and physiological aspects in the host-parasite relationship of the nematophagous fungus Pochonia chlamydosporia. Abstracts 6th IOBC Working Group Meeting on Multitrophic Interactions, Cordoba, 4-7 April 2011 . pp. 114
Biological and physiological aspects in the host-parasitic relationship of the nematophagous fungus Pochonia chlamydosporia
C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Esteves, I., Powers, S. J. and Kerry, B. R. 2011. Biological and physiological aspects in the host-parasitic relationship of the nematophagous fungus Pochonia chlamydosporia.
Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics
A - Papers appearing in refereed journals
Torode, T. A., O'Neill, R., Marcus, S. E., Cornuault, V., Pose, S., Lauder, R. P., Kracun, S. K., Rydahl, M. G., Anderson, M. C. F., Willats, W. G. T., Braybrook, S. A., Townsend, B. J., Clausen, M. H. and Knox, J. P. 2018. Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics . Plant Physiology. 176 (2), pp. 1547-1558. https://doi.org/10.1104/pp.17.01568
Bumble bees strategically use ground level linear features in navigation
A - Papers appearing in refereed journals
Brebner, J. S., Makinson, J. C., Bates, O. K., Rossi, N., Lim, K. S., Dubois, T., Gomez-Moracho, T., Lihoreau, M., Chittka, L. and Woodgate, J. L. 2021. Bumble bees strategically use ground level linear features in navigation. Animal Behaviour. 179, pp. 147-160. https://doi.org/10.1016/j.anbehav.2021.07.003
bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3
A - Papers appearing in refereed journals
Mendes, A., Kelly, A. A., Van-Erp, H., Shaw, E., Powers, S. J., Kurup, S. and Eastmond, P. J. 2013. bZIP67 regulates the omega-3 fatty acid content of Arabidopsis seed oil by activating FATTY ACID DESATURASE3. The Plant Cell. 25, pp. 3104-3116. https://doi.org/10.1105/tpc.113.116343
Cadmium in British wheat grain
C2 - Non-edited contributions to conferences
Chaudri, A. M., McGrath, S. P., Zhao, F-J. and Crosland, A. R. 1996. Cadmium in British wheat grain. Extended Abstracts 1st International Conference on Contaminants and the Soil Environment, Adelaide, February 1996 . pp. 77
Changes in free amino acid concentration in rye grain in response to nitrogen and sulphur availability, and expression analysis of genes involved in asparagine metabolism
A - Papers appearing in refereed journals
Postles, J., Curtis, T. Y., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2016. Changes in free amino acid concentration in rye grain in response to nitrogen and sulphur availability, and expression analysis of genes involved in asparagine metabolism. Frontiers in Plant Science. 7, p. 917. https://doi.org/10.3389/fpls.2016.00917
Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000
A - Papers appearing in refereed journals
Bierman, S. M., Fitt, B. D. L., Van Den Bosch, F., Bateman, G. L., Jenkyn, J. F. and Welham, S. J. 2002. Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000. Plant Pathology. 51 (2), pp. 191-201. https://doi.org/10.1046/j.1365-3059.2002.00673.x
Changes in soil organic matter over 70 years in continuous arable and ley–arable rotations on a sandy loam soil in England
A - Papers appearing in refereed journals
Johnston, A. E., Poulton, P. R., Coleman, K., Macdonald, A. J. and White, R. P. 2017. Changes in soil organic matter over 70 years in continuous arable and ley–arable rotations on a sandy loam soil in England. European Journal of Soil Science. 68 (3), pp. 305-316. https://doi.org/10.1111/ejss.12415
Changes in the arabinoxylan fraction of wheat grain during alcohol production
A - Papers appearing in refereed journals
Kosik, O., Powers, S. J., Chatzifragkou, A., Prabhakumari, P. C., Charalampopoulos, D., Hess, L., Brosnan, J., Shewry, P. R. and Lovegrove, A. 2017. Changes in the arabinoxylan fraction of wheat grain during alcohol production. Food Chemistry. 221 (15 April), pp. 1754-1762. https://doi.org/10.1016/j.foodchem.2016.10.109
Changes in the sulphur status of British wheat grain in the last decade, and its geographical distribution
A - Papers appearing in refereed journals
Zhao, F-J., McGrath, S. P., Crosland, A. R. and Salmon, S. E. 1995. Changes in the sulphur status of British wheat grain in the last decade, and its geographical distribution. Journal of the Science of Food and Agriculture. 68 (4), pp. 507-514. https://doi.org/10.1002/jsfa.2740680415
Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth
A - Papers appearing in refereed journals
Bhattacharya, A., Kourmpetli, S., Ward, D. A., Thomas, S. G., Gong, F., Powers, S. J., Carrera, E., Taylor, B., Nunez De Caceres Gonzalez, F., Tudzynski, B., Phillips, A. L., Davey, M. R. and Hedden, P. 2012. Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth. Plant Physiology. 160, pp. 837-845. https://doi.org/10.1104/pp.112.201756
Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues
A - Papers appearing in refereed journals
Lyons, R., Kutluk Yilmaz, N. D., Powers, S. J., Hammond-Kosack, K. E. and Kanyuka, K. 2009. Characterization of two unusual features of resistance to Soilborne cereal mosaic virus in hexaploid wheat: leakiness and gradual elimination of viral coat protein from infected root tissues. Molecular Plant-Microbe Interactions - MPMI. 22 (5), pp. 560-574. https://doi.org/10.1094/MPMI-22-5-0560
Characterizing animal anatomy and internal composition for electromagnetic modelling in radar entomology
A - Papers appearing in refereed journals
Mirkovic, D., Stepanian, P. M., Wainwright, C. E., Reynolds, D. R. and Menz, M. H. M. 2018. Characterizing animal anatomy and internal composition for electromagnetic modelling in radar entomology. Remote Sensing in Ecology and Conservation. https://doi.org/10.1002/rse2.94
Chemotaxis can take plant-parasitic nematodes to the source of a chemo-attractant via the shortest possible routes
A - Papers appearing in refereed journals
Reynolds, A. M., Dutta, T. K., Curtis, R. H. C., Powers, S. J., Gaur, H. S. and Kerry, B. R. 2011. Chemotaxis can take plant-parasitic nematodes to the source of a chemo-attractant via the shortest possible routes. Journal of the Royal Society Interface. 8, pp. 568-577. https://doi.org/10.1098/rsif.2010.0417
cis-jasmone elicits aphid-induced stress signalling in potatoes
A - Papers appearing in refereed journals
Sobhy, I. S., Woodcock, C. M., Powers, S. J., Caulfield, J. C., Pickett, J. A. and Birkett, M. A. 2017. cis-jasmone elicits aphid-induced stress signalling in potatoes. Journal of Chemical Ecology. 43 (1), pp. 39-52. https://doi.org/10.1007/s10886-016-0805-9
Combining spatial resolutions in the multiscale analysis of soil pore-size distributions
A - Papers appearing in refereed journals
Papadopoulos, A., Whitmore, A. P., White, R. P., Mooney, S. J. and Bird, N. R. A. 2009. Combining spatial resolutions in the multiscale analysis of soil pore-size distributions. Vadose Zone Journal. 8, pp. 227-232. https://doi.org/10.2136/vzj2008.0042
Comments on the use of statistical tests in the comparison of stochastic weather generators by Qian et al. (2004)
A - Papers appearing in refereed journals
Semenov, M. A. and Welham, S. J. 2004. Comments on the use of statistical tests in the comparison of stochastic weather generators by Qian et al. (2004). Climate Research. 28 (1), pp. 83-84. https://doi.org/10.3354/cr028083
Comparative field performance over 3 years and two sites of transgenic wheat lines expressing HMW subunit transgenes
A - Papers appearing in refereed journals
Shewry, P. R., Powers, S. J., Field, J. M., Fido, R. J., Jones, H. D., Arnold, G. M., West, J., Lazzeri, P. A., Barcelo, P., Barro, F., Tatham, A. S., Bekes, F., Butow, B. and Darlington, H. 2006. Comparative field performance over 3 years and two sites of transgenic wheat lines expressing HMW subunit transgenes. Theoretical and Applied Genetics. 113, pp. 128-136. https://doi.org/10.1007/s00122-006-0279-1
Comparison of aqua regia digestion with sodium carbonate fusion for the determination of total phosphorus in soils by inductively coupled plasma atomic emission spectroscopy (ICP)
A - Papers appearing in refereed journals
Crosland, A. R., Zhao, F-J., McGrath, S. P. and Lane, P. W. 1995. Comparison of aqua regia digestion with sodium carbonate fusion for the determination of total phosphorus in soils by inductively coupled plasma atomic emission spectroscopy (ICP). Communications in Soil Science and Plant Analysis. 26 (9-10), pp. 1357-1368. https://doi.org/10.1080/00103629509369377
Comparison of host recognition, invasion, development and reproduction of Meloidogyne graminicola and M. incognita on rice and tomato
A - Papers appearing in refereed journals
Dutta, T. K., Powers, S. J., Kerry, B. R., Gaur, H. S. and Curtis, R. H. C. 2011. Comparison of host recognition, invasion, development and reproduction of Meloidogyne graminicola and M. incognita on rice and tomato. Nematology. 13, pp. 509-520. https://doi.org/10.1163/138855410X528262
Comparison of the performance of nine commercial laboratories for testing nitrogen and sulphur in plants and soil: a second study (HGCA Project Report No. OS44)
D1 - Technical reports: non-confidential
Crosland, A. R., Vincent, J., Zhao, F-J. and McGrath, S. P. 2000. Comparison of the performance of nine commercial laboratories for testing nitrogen and sulphur in plants and soil: a second study (HGCA Project Report No. OS44). Home Grown Cereals Authority (HGCA) London.
Comparison of three wet digestion methods for the determination of plant sulphur by inductively coupled plasma atomic spectroscopy (ICP-AES)
A - Papers appearing in refereed journals
Zhao, F-J., McGrath, S. P. and Crosland, A. R. 1994. Comparison of three wet digestion methods for the determination of plant sulphur by inductively coupled plasma atomic spectroscopy (ICP-AES). Communications in Soil Science and Plant Analysis. 25 (3-4), pp. 407-418. https://doi.org/10.1080/00103629409369047